2023-10-12T13:55:54,490 Created temporary directory: /tmp/pip-build-tracker-ouwmsl82
2023-10-12T13:55:54,492 Initialized build tracking at /tmp/pip-build-tracker-ouwmsl82
2023-10-12T13:55:54,492 Created build tracker: /tmp/pip-build-tracker-ouwmsl82
2023-10-12T13:55:54,492 Entered build tracker: /tmp/pip-build-tracker-ouwmsl82
2023-10-12T13:55:54,493 Created temporary directory: /tmp/pip-wheel-hw2xv9tx
2023-10-12T13:55:54,497 Created temporary directory: /tmp/pip-ephem-wheel-cache-q5qza33_
2023-10-12T13:55:54,521 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-12T13:55:54,524 2 location(s) to search for versions of moleculekit:
2023-10-12T13:55:54,524 * https://pypi.org/simple/moleculekit/
2023-10-12T13:55:54,524 * https://www.piwheels.org/simple/moleculekit/
2023-10-12T13:55:54,525 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-12T13:55:54,525 Getting page https://pypi.org/simple/moleculekit/
2023-10-12T13:55:54,527 Found index url https://pypi.org/simple/
2023-10-12T13:55:54,582 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-12T13:55:54,620   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,620   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-12T13:55:54,620   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,621   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-12T13:55:54,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,621   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-12T13:55:54,621   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,622   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-12T13:55:54,622   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,622   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-12T13:55:54,622   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,623   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-12T13:55:54,623   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,623   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-12T13:55:54,623   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,624   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-12T13:55:54,624   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,624   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-12T13:55:54,624   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,624   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-12T13:55:54,625   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,625   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-12T13:55:54,625   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,625   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-12T13:55:54,626   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,626   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-12T13:55:54,626   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,626   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-12T13:55:54,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,627   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-12T13:55:54,627   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,628   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-12T13:55:54,628   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,628   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-12T13:55:54,628   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,628   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-12T13:55:54,629   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,629   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-12T13:55:54,629   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,629   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-12T13:55:54,630   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,630   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-12T13:55:54,630   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,630   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-12T13:55:54,631   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,631   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-12T13:55:54,631   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,631   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-12T13:55:54,632   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,632   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-12T13:55:54,632   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,632   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-12T13:55:54,632   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,633   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-12T13:55:54,633   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,633   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-12T13:55:54,633   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,634   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-12T13:55:54,634   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,634   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-12T13:55:54,634   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,634   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-12T13:55:54,635   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,635   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-12T13:55:54,635   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-12T13:55:54,635   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-10-12T13:55:54,657   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
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2023-10-12T13:55:54,658   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
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2023-10-12T13:55:54,659   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2023-10-12T13:55:54,659   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-10-12T13:55:54,659   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-10-12T13:55:54,659   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-10-12T13:55:54,660   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2023-10-12T13:55:54,660   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2023-10-12T13:55:54,661   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-10-12T13:55:54,661   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-10-12T13:55:54,661   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-10-12T13:55:54,661   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2023-10-12T13:55:54,662   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2023-10-12T13:55:54,662   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2023-10-12T13:55:54,662   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
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2023-10-12T13:55:54,663   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2023-10-12T13:55:54,664   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
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2023-10-12T13:55:54,667   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-10-12T13:55:54,668   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-10-12T13:55:54,668   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-10-12T13:55:54,669   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-10-12T13:55:54,669   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
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2023-10-12T13:55:54,670   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-10-12T13:55:54,671   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-10-12T13:55:54,672   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
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2023-10-12T13:55:54,675   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
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2023-10-12T13:55:54,678   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-12T13:55:54,678   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-12T13:55:54,679   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-12T13:55:54,679   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-12T13:55:54,680   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-12T13:55:54,680   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-12T13:55:54,681   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-12T13:55:54,681   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-12T13:55:54,682   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-12T13:55:54,683   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-12T13:55:54,683   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-12T13:55:54,684   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-12T13:55:54,684   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-12T13:55:54,685   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-12T13:55:54,685   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-12T13:55:54,686   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-10-12T13:55:54,686   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-10-12T13:55:54,687 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-12T13:55:54,687 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-12T13:55:54,688 Found index url https://www.piwheels.org/simple/
2023-10-12T13:55:54,756 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-12T13:55:54,849   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,849   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,850   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,851   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,851   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,851   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,851   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,852   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,853   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,853   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,853   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,853   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,853   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,854   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,854   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,854   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,854   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,854   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,855   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,855   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,855   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,855   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,856   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,857   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,857   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,862   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,862   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,862   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,862   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,862   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,865   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,865   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,865   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,865   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,865   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,866   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-12T13:55:54,866   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-12T13:55:54,874 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-12T13:55:54,874 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-12T13:55:54,916 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-12T13:55:54,934 Collecting moleculekit==1.8.2
2023-10-12T13:55:54,936   Created temporary directory: /tmp/pip-unpack-qlpelu_p
2023-10-12T13:55:54,980   Downloading moleculekit-1.8.2.tar.gz (6.2 MB)
2023-10-12T13:55:57,082   Added moleculekit==1.8.2 from https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz to build tracker '/tmp/pip-build-tracker-ouwmsl82'
2023-10-12T13:55:57,090   Created temporary directory: /tmp/pip-build-env-7_5k50ch
2023-10-12T13:55:57,100   Installing build dependencies: started
2023-10-12T13:55:57,101   Running command pip subprocess to install build dependencies
2023-10-12T13:55:58,292   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-12T13:55:58,833   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-12T13:56:00,466   Collecting setuptools
2023-10-12T13:56:00,542     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-12T13:56:01,892   Collecting numpy>=1.18.5
2023-10-12T13:56:03,251     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.0-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-12T13:56:05,488   Collecting Cython>=0.29.21
2023-10-12T13:56:06,267     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.3-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-12T13:56:06,642   Collecting toml
2023-10-12T13:56:06,659     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-12T13:56:06,841   Collecting versioneer[toml]==0.28
2023-10-12T13:56:06,880     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-12T13:56:07,016   Collecting tomli (from versioneer[toml]==0.28)
2023-10-12T13:56:07,033     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-12T13:56:09,040   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-12T13:56:09,082     Creating /tmp/pip-build-env-7_5k50ch/overlay/bin
2023-10-12T13:56:09,085     changing mode of /tmp/pip-build-env-7_5k50ch/overlay/bin/versioneer to 755
2023-10-12T13:56:18,949     changing mode of /tmp/pip-build-env-7_5k50ch/overlay/bin/f2py to 755
2023-10-12T13:56:22,375     changing mode of /tmp/pip-build-env-7_5k50ch/overlay/bin/cygdb to 755
2023-10-12T13:56:22,377     changing mode of /tmp/pip-build-env-7_5k50ch/overlay/bin/cython to 755
2023-10-12T13:56:22,379     changing mode of /tmp/pip-build-env-7_5k50ch/overlay/bin/cythonize to 755
2023-10-12T13:56:22,404   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-12T13:56:22,404   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.0 which is incompatible.
2023-10-12T13:56:22,405   Successfully installed Cython-3.0.3 numpy-1.26.0 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-10-12T13:56:23,015   Installing build dependencies: finished with status 'done'
2023-10-12T13:56:23,020   Getting requirements to build wheel: started
2023-10-12T13:56:23,021   Running command Getting requirements to build wheel
2023-10-12T13:57:01,631   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,632   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,633   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,634   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-12T13:57:01,634   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-12T13:57:01,634   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-12T13:57:01,634   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-12T13:57:01,634   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-12T13:57:01,634   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-12T13:57:01,634   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-12T13:57:01,635   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-12T13:57:01,635   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-12T13:57:01,635   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-12T13:57:01,635   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-12T13:57:01,635   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-12T13:57:01,635   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-12T13:57:01,915   running egg_info
2023-10-12T13:57:01,922   writing moleculekit.egg-info/PKG-INFO
2023-10-12T13:57:01,925   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-12T13:57:01,927   writing requirements to moleculekit.egg-info/requires.txt
2023-10-12T13:57:01,929   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-12T13:57:01,953   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,953   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,953   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,953   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,953   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,954   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,955   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,956   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,956   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,956   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-10-12T13:57:01,956   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,956   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,956   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,957   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,958   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,959   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-12T13:57:01,960   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,960   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,960   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,960   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,960   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,960   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:01,968   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:02,001   reading manifest template 'MANIFEST.in'
2023-10-12T13:57:02,219   no previously-included directories found matching 'moleculekit/test-data'
2023-10-12T13:57:02,220   no previously-included directories found matching 'moleculekit/tests'
2023-10-12T13:57:02,221   no previously-included directories found matching 'package'
2023-10-12T13:57:02,222   adding license file 'LICENSE'
2023-10-12T13:57:02,238   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:03,188   Getting requirements to build wheel: finished with status 'done'
2023-10-12T13:57:03,203   Installing backend dependencies: started
2023-10-12T13:57:03,204   Running command pip subprocess to install backend dependencies
2023-10-12T13:57:04,901   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-12T13:57:05,507   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-12T13:57:05,855   Collecting wheel
2023-10-12T13:57:05,878     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-12T13:57:07,497   Installing collected packages: wheel
2023-10-12T13:57:07,719     Creating /tmp/pip-build-env-7_5k50ch/normal/bin
2023-10-12T13:57:07,721     changing mode of /tmp/pip-build-env-7_5k50ch/normal/bin/wheel to 755
2023-10-12T13:57:07,734   Successfully installed wheel-0.41.2
2023-10-12T13:57:08,140   Installing backend dependencies: finished with status 'done'
2023-10-12T13:57:08,142   Created temporary directory: /tmp/pip-modern-metadata-bh9hv9jh
2023-10-12T13:57:08,145   Preparing metadata (pyproject.toml): started
2023-10-12T13:57:08,146   Running command Preparing metadata (pyproject.toml)
2023-10-12T13:57:10,538   running dist_info
2023-10-12T13:57:10,540   creating /tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info
2023-10-12T13:57:10,546   writing /tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info/PKG-INFO
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2023-10-12T13:57:10,552   writing requirements to /tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info/requires.txt
2023-10-12T13:57:10,553   writing top-level names to /tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info/top_level.txt
2023-10-12T13:57:10,554   writing manifest file '/tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:10,579   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-12T13:57:10,579   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:10,592   reading manifest file '/tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:10,594   reading manifest template 'MANIFEST.in'
2023-10-12T13:57:10,839   no previously-included directories found matching 'moleculekit/test-data'
2023-10-12T13:57:10,840   no previously-included directories found matching 'moleculekit/tests'
2023-10-12T13:57:10,841   no previously-included directories found matching 'package'
2023-10-12T13:57:10,841   adding license file 'LICENSE'
2023-10-12T13:57:10,853   writing manifest file '/tmp/pip-modern-metadata-bh9hv9jh/moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:10,862   creating '/tmp/pip-modern-metadata-bh9hv9jh/moleculekit-1.8.2.dist-info'
2023-10-12T13:57:11,060   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-12T13:57:11,066   Source in /tmp/pip-wheel-hw2xv9tx/moleculekit_ce7c37d792824eda9e065e7b974149c9 has version 1.8.2, which satisfies requirement moleculekit==1.8.2 from https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz
2023-10-12T13:57:11,067   Removed moleculekit==1.8.2 from https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz from build tracker '/tmp/pip-build-tracker-ouwmsl82'
2023-10-12T13:57:11,073 Created temporary directory: /tmp/pip-unpack-krkm_20y
2023-10-12T13:57:11,074 Created temporary directory: /tmp/pip-unpack-pnl30p34
2023-10-12T13:57:11,082 Building wheels for collected packages: moleculekit
2023-10-12T13:57:11,086   Created temporary directory: /tmp/pip-wheel-5mcrvm54
2023-10-12T13:57:11,087   Destination directory: /tmp/pip-wheel-5mcrvm54
2023-10-12T13:57:11,089   Building wheel for moleculekit (pyproject.toml): started
2023-10-12T13:57:11,090   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-12T13:57:13,333   running bdist_wheel
2023-10-12T13:57:13,350   running build
2023-10-12T13:57:13,350   running build_py
2023-10-12T13:57:13,358   creating build
2023-10-12T13:57:13,359   creating build/lib.linux-armv7l-cpython-39
2023-10-12T13:57:13,359   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,361   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,363   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,365   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,367   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,369   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,371   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,374   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,379   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,383   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,385   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,387   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,388   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,390   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,392   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,394   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,395   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,398   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,399   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,401   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,403   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,405   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,408   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,409   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,411   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,413   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,416   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,418   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,420   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,422   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,425   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,427   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,429   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,431   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,433   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,436   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-12T13:57:13,440   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-12T13:57:13,441   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-12T13:57:13,442   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-12T13:57:13,446   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-12T13:57:13,447   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-12T13:57:13,449   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-12T13:57:13,452   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-12T13:57:13,453   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-12T13:57:13,456   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-12T13:57:13,457   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-12T13:57:13,461   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-12T13:57:13,463   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-12T13:57:13,466   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-12T13:57:13,467   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-12T13:57:13,469   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,470   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,472   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,475   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,477   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,479   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,481   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-12T13:57:13,484   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,485   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,488   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,490   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,492   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,494   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,496   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,499   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,501   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,503   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,506   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,508   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,510   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,512   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,514   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,516   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-12T13:57:13,519   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-12T13:57:13,520   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-12T13:57:13,522   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-12T13:57:13,524   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-12T13:57:13,525   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-12T13:57:13,527   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-12T13:57:13,529   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-12T13:57:13,531   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-12T13:57:13,534   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-12T13:57:13,535   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-12T13:57:13,537   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-12T13:57:13,540   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-12T13:57:13,541   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-12T13:57:13,544   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-12T13:57:13,545   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-12T13:57:13,547   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-12T13:57:13,549   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-12T13:57:13,550   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-12T13:57:13,553   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-12T13:57:13,554   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-12T13:57:13,557   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-12T13:57:13,558   running egg_info
2023-10-12T13:57:13,564   writing moleculekit.egg-info/PKG-INFO
2023-10-12T13:57:13,567   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-12T13:57:13,568   writing requirements to moleculekit.egg-info/requires.txt
2023-10-12T13:57:13,569   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-12T13:57:13,583   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,583   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,583   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,583   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,584   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,585   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,586   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,587   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,588   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,589   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,590   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,590   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,590   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,590   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,590   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,590   dependency /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-12T13:57:13,596   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:13,605   reading manifest template 'MANIFEST.in'
2023-10-12T13:57:13,834   no previously-included directories found matching 'moleculekit/test-data'
2023-10-12T13:57:13,835   no previously-included directories found matching 'moleculekit/tests'
2023-10-12T13:57:13,836   no previously-included directories found matching 'package'
2023-10-12T13:57:13,836   adding license file 'LICENSE'
2023-10-12T13:57:13,853   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-12T13:57:13,863   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-12T13:57:13,863   !!

2023-10-12T13:57:13,864           ********************************************************************************
2023-10-12T13:57:13,864           ############################
2023-10-12T13:57:13,864           # Package would be ignored #
2023-10-12T13:57:13,864           ############################
2023-10-12T13:57:13,864           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-12T13:57:13,864           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,864           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,865           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-12T13:57:13,865           to the `packages` configuration field.

2023-10-12T13:57:13,865           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,865           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,865           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,865           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,866           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,866           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-12T13:57:13,866           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-12T13:57:13,866           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,866           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,866           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,867           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,867           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,867           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,867                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,867                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,868                 directory, all directories are treated like packages.
2023-10-12T13:57:13,868           ********************************************************************************

2023-10-12T13:57:13,868   !!
2023-10-12T13:57:13,868     check.warn(importable)
2023-10-12T13:57:13,868   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-12T13:57:13,868   !!

2023-10-12T13:57:13,869           ********************************************************************************
2023-10-12T13:57:13,869           ############################
2023-10-12T13:57:13,869           # Package would be ignored #
2023-10-12T13:57:13,869           ############################
2023-10-12T13:57:13,869           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-12T13:57:13,869           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,869           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,870           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-12T13:57:13,870           to the `packages` configuration field.

2023-10-12T13:57:13,870           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,870           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,870           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,870           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,871           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,871           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-12T13:57:13,871           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-12T13:57:13,871           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,871           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,871           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,872           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,872           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,872           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,872                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,872                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,872                 directory, all directories are treated like packages.
2023-10-12T13:57:13,873           ********************************************************************************

2023-10-12T13:57:13,873   !!
2023-10-12T13:57:13,873     check.warn(importable)
2023-10-12T13:57:13,873   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-12T13:57:13,873   !!

2023-10-12T13:57:13,873           ********************************************************************************
2023-10-12T13:57:13,873           ############################
2023-10-12T13:57:13,874           # Package would be ignored #
2023-10-12T13:57:13,874           ############################
2023-10-12T13:57:13,874           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-12T13:57:13,874           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,874           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,874           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-12T13:57:13,874           to the `packages` configuration field.

2023-10-12T13:57:13,875           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,875           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,875           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,875           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,875           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,876           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-12T13:57:13,876           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-12T13:57:13,876           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,876           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,876           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,876           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,877           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,877           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,877                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,877                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,877                 directory, all directories are treated like packages.
2023-10-12T13:57:13,877           ********************************************************************************

2023-10-12T13:57:13,878   !!
2023-10-12T13:57:13,878     check.warn(importable)
2023-10-12T13:57:13,878   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-12T13:57:13,878   !!

2023-10-12T13:57:13,878           ********************************************************************************
2023-10-12T13:57:13,878           ############################
2023-10-12T13:57:13,878           # Package would be ignored #
2023-10-12T13:57:13,879           ############################
2023-10-12T13:57:13,879           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-12T13:57:13,879           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,879           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,879           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-12T13:57:13,879           to the `packages` configuration field.

2023-10-12T13:57:13,879           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,880           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,880           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,880           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,880           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,880           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-12T13:57:13,881           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-12T13:57:13,881           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,881           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,881           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,881           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,881           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,882           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,882                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,882                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,882                 directory, all directories are treated like packages.
2023-10-12T13:57:13,882           ********************************************************************************

2023-10-12T13:57:13,882   !!
2023-10-12T13:57:13,882     check.warn(importable)
2023-10-12T13:57:13,883   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-12T13:57:13,883   !!

2023-10-12T13:57:13,883           ********************************************************************************
2023-10-12T13:57:13,883           ############################
2023-10-12T13:57:13,883           # Package would be ignored #
2023-10-12T13:57:13,883           ############################
2023-10-12T13:57:13,883           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-12T13:57:13,883           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,884           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,884           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-12T13:57:13,884           to the `packages` configuration field.

2023-10-12T13:57:13,884           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,884           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,884           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,885           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,885           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,885           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-12T13:57:13,885           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-12T13:57:13,885           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,885           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,886           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,886           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,886           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,886           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,887                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,887                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,887                 directory, all directories are treated like packages.
2023-10-12T13:57:13,887           ********************************************************************************

2023-10-12T13:57:13,887   !!
2023-10-12T13:57:13,887     check.warn(importable)
2023-10-12T13:57:13,887   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-12T13:57:13,888   !!

2023-10-12T13:57:13,888           ********************************************************************************
2023-10-12T13:57:13,888           ############################
2023-10-12T13:57:13,888           # Package would be ignored #
2023-10-12T13:57:13,888           ############################
2023-10-12T13:57:13,888           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-12T13:57:13,888           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,889           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,889           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-12T13:57:13,889           to the `packages` configuration field.

2023-10-12T13:57:13,889           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,889           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,889           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,890           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,890           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,890           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-12T13:57:13,890           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-12T13:57:13,890           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,890           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,890           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,891           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,891           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,891           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,891                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,891                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,892                 directory, all directories are treated like packages.
2023-10-12T13:57:13,892           ********************************************************************************

2023-10-12T13:57:13,892   !!
2023-10-12T13:57:13,892     check.warn(importable)
2023-10-12T13:57:13,892   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-12T13:57:13,892   !!

2023-10-12T13:57:13,892           ********************************************************************************
2023-10-12T13:57:13,893           ############################
2023-10-12T13:57:13,893           # Package would be ignored #
2023-10-12T13:57:13,893           ############################
2023-10-12T13:57:13,893           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-12T13:57:13,893           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,893           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,893           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-12T13:57:13,893           to the `packages` configuration field.

2023-10-12T13:57:13,894           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,894           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,894           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,894           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,894           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,894           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-12T13:57:13,895           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-12T13:57:13,895           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,895           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,895           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,895           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,895           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,896           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,896                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,896                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,896                 directory, all directories are treated like packages.
2023-10-12T13:57:13,896           ********************************************************************************

2023-10-12T13:57:13,896   !!
2023-10-12T13:57:13,897     check.warn(importable)
2023-10-12T13:57:13,897   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-12T13:57:13,897   !!

2023-10-12T13:57:13,897           ********************************************************************************
2023-10-12T13:57:13,897           ############################
2023-10-12T13:57:13,897           # Package would be ignored #
2023-10-12T13:57:13,897           ############################
2023-10-12T13:57:13,897           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-12T13:57:13,898           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,898           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,898           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-12T13:57:13,898           to the `packages` configuration field.

2023-10-12T13:57:13,898           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,898           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,898           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,899           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,899           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,899           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-12T13:57:13,899           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-12T13:57:13,899           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,899           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,899           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,900           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,900           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,900           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,900                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,900                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,901                 directory, all directories are treated like packages.
2023-10-12T13:57:13,901           ********************************************************************************

2023-10-12T13:57:13,901   !!
2023-10-12T13:57:13,901     check.warn(importable)
2023-10-12T13:57:13,901   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-12T13:57:13,901   !!

2023-10-12T13:57:13,901           ********************************************************************************
2023-10-12T13:57:13,902           ############################
2023-10-12T13:57:13,902           # Package would be ignored #
2023-10-12T13:57:13,902           ############################
2023-10-12T13:57:13,902           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-12T13:57:13,902           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,902           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,902           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-12T13:57:13,902           to the `packages` configuration field.

2023-10-12T13:57:13,903           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,903           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,903           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,903           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,903           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,904           If you don't want 'moleculekit.share' to be distributed and are
2023-10-12T13:57:13,904           already explicitly excluding 'moleculekit.share' via
2023-10-12T13:57:13,904           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,904           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,904           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,904           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,905           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,905           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,905                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,905                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,905                 directory, all directories are treated like packages.
2023-10-12T13:57:13,905           ********************************************************************************

2023-10-12T13:57:13,906   !!
2023-10-12T13:57:13,906     check.warn(importable)
2023-10-12T13:57:13,906   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-12T13:57:13,906   !!

2023-10-12T13:57:13,906           ********************************************************************************
2023-10-12T13:57:13,906           ############################
2023-10-12T13:57:13,907           # Package would be ignored #
2023-10-12T13:57:13,907           ############################
2023-10-12T13:57:13,907           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-12T13:57:13,907           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,907           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,907           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-12T13:57:13,907           to the `packages` configuration field.

2023-10-12T13:57:13,908           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,908           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,908           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,908           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,908           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,909           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-12T13:57:13,909           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-12T13:57:13,909           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,909           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,909           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,909           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,910           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,910           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,910                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,910                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,910                 directory, all directories are treated like packages.
2023-10-12T13:57:13,911           ********************************************************************************

2023-10-12T13:57:13,911   !!
2023-10-12T13:57:13,911     check.warn(importable)
2023-10-12T13:57:13,911   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-12T13:57:13,911   !!

2023-10-12T13:57:13,911           ********************************************************************************
2023-10-12T13:57:13,912           ############################
2023-10-12T13:57:13,912           # Package would be ignored #
2023-10-12T13:57:13,912           ############################
2023-10-12T13:57:13,912           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-12T13:57:13,912           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,912           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,912           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-12T13:57:13,913           to the `packages` configuration field.

2023-10-12T13:57:13,913           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,913           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,913           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,913           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,913           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,914           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-12T13:57:13,914           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-12T13:57:13,914           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,914           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,914           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,914           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,915           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,915           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,915                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,915                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,915                 directory, all directories are treated like packages.
2023-10-12T13:57:13,916           ********************************************************************************

2023-10-12T13:57:13,916   !!
2023-10-12T13:57:13,916     check.warn(importable)
2023-10-12T13:57:13,916   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-12T13:57:13,916   !!

2023-10-12T13:57:13,916           ********************************************************************************
2023-10-12T13:57:13,916           ############################
2023-10-12T13:57:13,917           # Package would be ignored #
2023-10-12T13:57:13,917           ############################
2023-10-12T13:57:13,917           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-12T13:57:13,917           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,917           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,917           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-12T13:57:13,917           to the `packages` configuration field.

2023-10-12T13:57:13,918           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,918           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,918           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,918           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,919           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,919           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-12T13:57:13,919           already explicitly excluding 'moleculekit.tmalign' via
2023-10-12T13:57:13,919           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,919           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,919           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,920           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,920           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,920           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,920                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,921                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,921                 directory, all directories are treated like packages.
2023-10-12T13:57:13,921           ********************************************************************************

2023-10-12T13:57:13,921   !!
2023-10-12T13:57:13,921     check.warn(importable)
2023-10-12T13:57:13,921   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-12T13:57:13,922   !!

2023-10-12T13:57:13,922           ********************************************************************************
2023-10-12T13:57:13,922           ############################
2023-10-12T13:57:13,922           # Package would be ignored #
2023-10-12T13:57:13,922           ############################
2023-10-12T13:57:13,922           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-12T13:57:13,922           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,923           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,923           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-12T13:57:13,923           to the `packages` configuration field.

2023-10-12T13:57:13,923           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,923           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,924           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,924           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,924           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,924           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-12T13:57:13,925           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-12T13:57:13,925           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,925           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,925           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,925           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,926           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,926           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,926                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,926                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,927                 directory, all directories are treated like packages.
2023-10-12T13:57:13,927           ********************************************************************************

2023-10-12T13:57:13,927   !!
2023-10-12T13:57:13,927     check.warn(importable)
2023-10-12T13:57:13,927   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-12T13:57:13,927   !!

2023-10-12T13:57:13,928           ********************************************************************************
2023-10-12T13:57:13,928           ############################
2023-10-12T13:57:13,928           # Package would be ignored #
2023-10-12T13:57:13,928           ############################
2023-10-12T13:57:13,928           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-12T13:57:13,928           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,929           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,929           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-12T13:57:13,929           to the `packages` configuration field.

2023-10-12T13:57:13,929           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,929           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,930           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,930           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,930           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,930           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-12T13:57:13,931           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-12T13:57:13,931           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,931           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,931           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,931           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,931           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,932           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,932                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,932                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,932                 directory, all directories are treated like packages.
2023-10-12T13:57:13,932           ********************************************************************************

2023-10-12T13:57:13,933   !!
2023-10-12T13:57:13,933     check.warn(importable)
2023-10-12T13:57:13,933   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-12T13:57:13,933   !!

2023-10-12T13:57:13,933           ********************************************************************************
2023-10-12T13:57:13,934           ############################
2023-10-12T13:57:13,934           # Package would be ignored #
2023-10-12T13:57:13,934           ############################
2023-10-12T13:57:13,934           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-12T13:57:13,934           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,934           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,934           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-12T13:57:13,935           to the `packages` configuration field.

2023-10-12T13:57:13,935           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,935           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,935           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,936           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,936           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,936           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-12T13:57:13,936           already explicitly excluding 'moleculekit.wrapping' via
2023-10-12T13:57:13,936           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,936           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,937           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,937           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,937           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,938           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,938                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,938                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,938                 directory, all directories are treated like packages.
2023-10-12T13:57:13,938           ********************************************************************************

2023-10-12T13:57:13,938   !!
2023-10-12T13:57:13,938     check.warn(importable)
2023-10-12T13:57:13,939   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-12T13:57:13,939   !!

2023-10-12T13:57:13,939           ********************************************************************************
2023-10-12T13:57:13,939           ############################
2023-10-12T13:57:13,939           # Package would be ignored #
2023-10-12T13:57:13,939           ############################
2023-10-12T13:57:13,940           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-12T13:57:13,940           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,940           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,940           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-12T13:57:13,942           to the `packages` configuration field.

2023-10-12T13:57:13,942           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,942           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,942           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,943           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,943           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,944           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-12T13:57:13,944           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-12T13:57:13,944           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,944           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,944           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,944           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,945           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,945           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,945                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,945                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,945                 directory, all directories are treated like packages.
2023-10-12T13:57:13,946           ********************************************************************************

2023-10-12T13:57:13,946   !!
2023-10-12T13:57:13,946     check.warn(importable)
2023-10-12T13:57:13,946   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-12T13:57:13,946   !!

2023-10-12T13:57:13,947           ********************************************************************************
2023-10-12T13:57:13,947           ############################
2023-10-12T13:57:13,947           # Package would be ignored #
2023-10-12T13:57:13,947           ############################
2023-10-12T13:57:13,947           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-12T13:57:13,947           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,948           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,948           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-12T13:57:13,948           to the `packages` configuration field.

2023-10-12T13:57:13,948           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,948           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,948           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,949           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,949           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,949           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-12T13:57:13,949           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-12T13:57:13,949           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,950           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,950           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,950           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,950           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,951           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,951                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,951                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,951                 directory, all directories are treated like packages.
2023-10-12T13:57:13,951           ********************************************************************************

2023-10-12T13:57:13,951   !!
2023-10-12T13:57:13,951     check.warn(importable)
2023-10-12T13:57:13,952   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-12T13:57:13,952   !!

2023-10-12T13:57:13,952           ********************************************************************************
2023-10-12T13:57:13,952           ############################
2023-10-12T13:57:13,952           # Package would be ignored #
2023-10-12T13:57:13,952           ############################
2023-10-12T13:57:13,952           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-12T13:57:13,952           but it is absent from setuptools' `packages` configuration.

2023-10-12T13:57:13,953           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-12T13:57:13,953           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-12T13:57:13,953           to the `packages` configuration field.

2023-10-12T13:57:13,953           Alternatively, you can also rely on setuptools' discovery methods
2023-10-12T13:57:13,953           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-12T13:57:13,953           instead of `find_packages(...)`/`find:`).

2023-10-12T13:57:13,954           You can read more about "package discovery" on setuptools documentation page:

2023-10-12T13:57:13,954           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-12T13:57:13,954           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-12T13:57:13,954           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-12T13:57:13,954           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-12T13:57:13,954           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-12T13:57:13,955           combination with a more fine grained `package-data` configuration.

2023-10-12T13:57:13,955           You can read more about "package data files" on setuptools documentation page:

2023-10-12T13:57:13,955           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-12T13:57:13,956           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-12T13:57:13,957                 even if it does not contain any `.py` files.
2023-10-12T13:57:13,957                 On the other hand, currently there is no concept of package data
2023-10-12T13:57:13,957                 directory, all directories are treated like packages.
2023-10-12T13:57:13,957           ********************************************************************************

2023-10-12T13:57:13,957   !!
2023-10-12T13:57:13,958     check.warn(importable)
2023-10-12T13:57:13,958   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,958   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:13,958   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-12T13:57:13,958   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-12T13:57:13,958   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-12T13:57:13,959   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-12T13:57:13,959   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-12T13:57:13,972   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-12T13:57:13,974   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-12T13:57:13,975   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-12T13:57:14,010   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-12T13:57:14,013   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-12T13:57:14,013   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-12T13:57:14,035   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-12T13:57:14,037   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-12T13:57:14,038   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-12T13:57:14,040   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-12T13:57:14,042   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-12T13:57:14,247   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-12T13:57:14,248   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-12T13:57:14,250   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-12T13:57:14,251   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,252   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,254   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,256   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,258   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,260   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,263   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,265   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,267   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,269   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,272   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,274   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,277   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,279   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,281   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,283   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,285   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,287   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,290   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,292   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,294   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,297   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,299   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,301   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,304   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,306   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,309   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,311   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,313   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,316   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,318   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,320   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,322   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,325   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,327   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,329   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,331   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,333   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,335   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,338   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,340   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,342   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,344   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,346   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,349   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,351   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,353   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,355   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,357   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,359   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,362   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,364   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,366   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,369   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,371   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,373   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,375   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,377   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,379   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,382   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,384   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,386   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,388   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,390   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,393   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,395   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,397   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,399   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,402   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,404   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,406   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,408   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,411   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,413   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,415   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,417   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,419   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,422   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,424   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,426   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,428   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,430   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,433   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,435   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,437   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,439   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,441   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,443   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,445   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,446   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,448   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,450   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,452   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,454   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,456   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,458   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,460   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,462   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,464   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,466   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,468   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,470   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,472   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,474   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,476   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,478   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,481   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,483   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,486   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,488   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,490   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,493   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,495   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,498   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,500   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,502   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,505   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,507   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,510   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,512   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,515   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,518   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,520   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,523   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,525   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,528   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,531   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,533   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,536   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,539   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,541   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,544   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,547   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,549   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,552   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,554   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,557   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,560   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,562   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,565   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,568   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,570   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,573   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,575   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,577   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,579   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,581   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,583   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,585   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,587   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,589   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,591   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,593   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,595   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,597   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,599   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,602   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,604   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,606   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,608   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,610   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,612   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,614   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,616   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,618   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,620   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,622   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,624   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,626   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,628   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,630   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,632   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,634   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,636   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,638   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,639   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-12T13:57:14,641   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-12T13:57:14,642   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-12T13:57:14,698   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-12T13:57:14,701   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-12T13:57:14,703   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-12T13:57:14,704   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-12T13:57:14,706   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-12T13:57:14,707   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-12T13:57:14,715   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-12T13:57:14,716   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-12T13:57:14,741   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-12T13:57:14,743   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-12T13:57:14,744   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-12T13:57:14,762   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-12T13:57:14,764   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-12T13:57:14,766   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-12T13:57:14,766   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-12T13:57:14,769   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-12T13:57:14,771   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-12T13:57:14,773   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-12T13:57:14,774   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-12T13:57:14,777   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-12T13:57:14,779   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-12T13:57:14,782   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-12T13:57:14,782   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-12T13:57:14,802   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-12T13:57:14,804   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-12T13:57:14,805   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-12T13:57:14,830   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-12T13:57:14,833   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-12T13:57:14,833   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-12T13:57:14,855   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-12T13:57:14,858   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-12T13:57:14,858   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-12T13:57:14,879   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-12T13:57:14,891   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-12T13:57:14,891   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.2'
2023-10-12T13:57:14,891   running build_ext
2023-10-12T13:57:14,902   building 'moleculekit.interactions.hbonds' extension
2023-10-12T13:57:14,903   creating build/temp.linux-armv7l-cpython-39
2023-10-12T13:57:14,904   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-12T13:57:14,904   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-12T13:57:14,905   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-12T13:57:14,906   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-12T13:57:15,164   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:57:15,164                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:57:15,164                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:57:15,165                    from moleculekit/interactions/hbonds/hbonds.cpp:1219:
2023-10-12T13:57:15,165   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:57:15,165      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:57:15,165         |  ^~~~~~~
2023-10-12T13:57:41,459   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-12T13:57:41,776   building 'moleculekit.interactions.pipi' extension
2023-10-12T13:57:41,777   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-12T13:57:41,777   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-12T13:57:42,007   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:57:42,007                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:57:42,007                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:57:42,008                    from moleculekit/interactions/pipi/pipi.cpp:1219:
2023-10-12T13:57:42,008   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:57:42,008      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:57:42,008         |  ^~~~~~~
2023-10-12T13:58:10,223   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-12T13:58:10,543   building 'moleculekit.interactions.cationpi' extension
2023-10-12T13:58:10,544   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-12T13:58:10,545   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-12T13:58:10,806   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:58:10,806                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:58:10,806                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:58:10,806                    from moleculekit/interactions/cationpi/cationpi.cpp:1219:
2023-10-12T13:58:10,807   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:58:10,807      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:58:10,807         |  ^~~~~~~
2023-10-12T13:58:38,766   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-12T13:58:39,089   building 'moleculekit.interactions.sigmahole' extension
2023-10-12T13:58:39,090   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-12T13:58:39,091   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-12T13:58:39,360   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:58:39,360                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:58:39,360                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:58:39,360                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1219:
2023-10-12T13:58:39,360   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:58:39,360      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:58:39,361         |  ^~~~~~~
2023-10-12T13:59:06,953   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-12T13:59:07,279   building 'moleculekit.wrapping' extension
2023-10-12T13:59:07,279   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-12T13:59:07,280   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-12T13:59:07,517   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:59:07,517                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:59:07,517                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:59:07,517                    from moleculekit/wrapping/wrapping.cpp:1219:
2023-10-12T13:59:07,517   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:59:07,518      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:59:07,518         |  ^~~~~~~
2023-10-12T13:59:31,425   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-12T13:59:31,634   building 'moleculekit.bondguesser_utils' extension
2023-10-12T13:59:31,635   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-12T13:59:31,635   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-12T13:59:31,871   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:59:31,871                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:59:31,871                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:59:31,871                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1219:
2023-10-12T13:59:31,871   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:59:31,871      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:59:31,872         |  ^~~~~~~
2023-10-12T13:59:33,413   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-12T13:59:33,413   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19759:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-12T13:59:33,413   19759 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-12T13:59:33,413         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-12T13:59:33,414   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-12T13:59:33,414   19771 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-12T13:59:33,414         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-12T13:59:33,415   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-12T13:59:33,415   19783 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-12T13:59:33,415         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-12T13:59:33,416   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19822:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,416   19822 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-12T13:59:33,416         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,417   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19861:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,417   19861 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-12T13:59:33,417         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,418   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19900:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,418   19900 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,418         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,419   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19939:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,419   19939 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-12T13:59:33,419         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,420   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19945:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,420   19945 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-12T13:59:33,420         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,421   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19986:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,421   19986 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-12T13:59:33,421         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,421   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19992:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,422   19992 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,422         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,422   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20033:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,423   20033 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-12T13:59:33,423         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,423   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20039:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,424   20039 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,424         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,424   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20080:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,425   20080 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-12T13:59:33,425         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,426   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20133:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,426   20133 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,426         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,427   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20180:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,427   20180 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,427         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20221:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,428   20221 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-12T13:59:33,428         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20227:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,428   20227 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-12T13:59:33,428         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,429   20233 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,429         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,429   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20280:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,429   20280 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-12T13:59:33,429         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,429   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20286:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,429   20286 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,430         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,430   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20327:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,430   20327 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-12T13:59:33,430         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,430   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,430   20339 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,431         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,431   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20392:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-12T13:59:33,431   20392 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-12T13:59:33,431         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,450   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-12T13:59:33,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21014:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-12T13:59:33,451   21014 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-12T13:59:33,451         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-12T13:59:33,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21051:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-12T13:59:33,451   21051 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-12T13:59:33,451         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-12T13:59:56,642   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-12T13:59:56,943   building 'moleculekit.atomselect_utils' extension
2023-10-12T13:59:56,943   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-12T13:59:56,944   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-12T13:59:57,181   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T13:59:57,182                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T13:59:57,182                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T13:59:57,182                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1236:
2023-10-12T13:59:57,182   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T13:59:57,182      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T13:59:57,182         |  ^~~~~~~
2023-10-12T13:59:58,912   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-12T13:59:58,913   moleculekit/atomselect_utils/atomselect_utils.cpp:23713:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-12T13:59:58,913   23713 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-12T13:59:58,913         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-12T13:59:58,919   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-12T13:59:58,919   moleculekit/atomselect_utils/atomselect_utils.cpp:23965:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-12T13:59:58,919   23965 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-12T13:59:58,919         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-12T13:59:58,925   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-12T13:59:58,925   moleculekit/atomselect_utils/atomselect_utils.cpp:24232:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-12T13:59:58,925   24232 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-12T13:59:58,925         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-12T14:00:29,436   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-12T14:00:29,762   building 'moleculekit.distance_utils' extension
2023-10-12T14:00:29,763   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-12T14:00:29,764   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-12T14:00:29,995   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T14:00:29,996                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T14:00:29,996                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T14:00:29,996                    from moleculekit/distance_utils/distance_utils.cpp:1219:
2023-10-12T14:00:29,996   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T14:00:29,996      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T14:00:29,996         |  ^~~~~~~
2023-10-12T14:01:02,421   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-12T14:01:02,747   building 'moleculekit.occupancy_utils' extension
2023-10-12T14:01:02,748   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-12T14:01:02,749   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-12T14:01:03,022   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T14:01:03,022                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T14:01:03,022                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T14:01:03,022                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1219:
2023-10-12T14:01:03,022   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T14:01:03,022      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T14:01:03,023         |  ^~~~~~~
2023-10-12T14:01:26,038   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-12T14:01:26,245   building 'moleculekit.xtc' extension
2023-10-12T14:01:26,246   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-12T14:01:26,247   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-12T14:01:26,248   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-12T14:01:26,485   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,485      66 |  "OK",
2023-10-12T14:01:26,486         |  ^~~~
2023-10-12T14:01:26,486   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,486      67 |  "Header",
2023-10-12T14:01:26,486         |  ^~~~~~~~
2023-10-12T14:01:26,486   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,487      68 |  "String",
2023-10-12T14:01:26,487         |  ^~~~~~~~
2023-10-12T14:01:26,487   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,487      69 |  "Double",
2023-10-12T14:01:26,487         |  ^~~~~~~~
2023-10-12T14:01:26,487   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,488      70 |  "Integer",
2023-10-12T14:01:26,488         |  ^~~~~~~~~
2023-10-12T14:01:26,488   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,488      71 |  "Float",
2023-10-12T14:01:26,488         |  ^~~~~~~
2023-10-12T14:01:26,488   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,489      72 |  "Unsigned integer",
2023-10-12T14:01:26,489         |  ^~~~~~~~~~~~~~~~~~
2023-10-12T14:01:26,489   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,489      73 |  "Compressed 3D coordinate",
2023-10-12T14:01:26,489         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-12T14:01:26,489   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,490      74 |  "Closing file",
2023-10-12T14:01:26,490         |  ^~~~~~~~~~~~~~
2023-10-12T14:01:26,490   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,490      75 |  "Magic number",
2023-10-12T14:01:26,490         |  ^~~~~~~~~~~~~~
2023-10-12T14:01:26,491   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,491      76 |  "Not enough memory",
2023-10-12T14:01:26,491         |  ^~~~~~~~~~~~~~~~~~~
2023-10-12T14:01:26,491   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,491      77 |  "End of file",
2023-10-12T14:01:26,491         |  ^~~~~~~~~~~~~
2023-10-12T14:01:26,492   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-12T14:01:26,492      78 |  "File not found"
2023-10-12T14:01:26,492         |  ^~~~~~~~~~~~~~~~
2023-10-12T14:01:26,500   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-12T14:01:26,500   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,500     459 |     while (size >= num && num_of_bits < 32)
2023-10-12T14:01:26,500         |            ~~~~~^~~~~~
2023-10-12T14:01:26,501   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-12T14:01:26,502   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,502     505 |     while (bytes[num_of_bytes] >= num)
2023-10-12T14:01:26,502         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-12T14:01:26,505   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-12T14:01:26,505   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,505     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-12T14:01:26,505         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-12T14:01:26,505   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,506     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-12T14:01:26,506         |               ~~^~~~~~~~~~~~~~
2023-10-12T14:01:26,506   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,506     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-12T14:01:26,507         |               ~~^~~~~~~~~~~~~~~~
2023-10-12T14:01:26,508   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-12T14:01:26,508   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,508     664 |   if (lastbits < num_of_bits)
2023-10-12T14:01:26,508         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-12T14:01:26,512   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-12T14:01:26,512   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,513     785 |  if(size3>xfp->buf1size)
2023-10-12T14:01:26,513         |     ~~~~~^~~~~~~~~~~~~~
2023-10-12T14:01:26,515   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,515     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-12T14:01:26,515         |                   ^
2023-10-12T14:01:26,518   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,518     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-12T14:01:26,518         |        ~~~~~~~~~^~~~~~~~
2023-10-12T14:01:26,518   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,518     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-12T14:01:26,518         |        ~~~~~~~~~^~~~~~~~
2023-10-12T14:01:26,519   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,519     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-12T14:01:26,519         |        ~~~~~~~~~^~~~~~~~
2023-10-12T14:01:26,519   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,519     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-12T14:01:26,519         |        ~~~~~~~~~^~~~~~~~
2023-10-12T14:01:26,519   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,520     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-12T14:01:26,520         |        ~~~~~~~~~^~~~~~~~
2023-10-12T14:01:26,520   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,520     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-12T14:01:26,520         |        ~~~~~~~~~^~~~~~~~
2023-10-12T14:01:26,520   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-12T14:01:26,520     756 |  int smallidx,  minidx, maxidx;
2023-10-12T14:01:26,521         |                 ^~~~~~
2023-10-12T14:01:26,521   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-12T14:01:26,521     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-12T14:01:26,521         |                         ^~~~~~
2023-10-12T14:01:26,521   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-12T14:01:26,521     763 |  int errval=1;
2023-10-12T14:01:26,521         |      ^~~~~~
2023-10-12T14:01:26,522   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-12T14:01:26,522   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,522    1011 |  if(size3>xfp->buf1size)
2023-10-12T14:01:26,522         |     ~~~~~^~~~~~~~~~~~~~
2023-10-12T14:01:26,524   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,524    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-12T14:01:26,524         |                     ~~~~~~~~^~~~~~~
2023-10-12T14:01:26,525   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,525    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-12T14:01:26,525         |                    ~~~~~~~~^~~~~~~
2023-10-12T14:01:26,525   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,526    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-12T14:01:26,526         |                    ~~~~~~~~^~~~~~~
2023-10-12T14:01:26,527   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,527    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-12T14:01:26,527         |                  ^
2023-10-12T14:01:26,527   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,528    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-12T14:01:26,528         |                   ^
2023-10-12T14:01:26,531   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,531    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-12T14:01:26,531         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-12T14:01:26,532   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-12T14:01:26,532    1001 |  int errval;
2023-10-12T14:01:26,532         |      ^~~~~~
2023-10-12T14:01:26,534   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-12T14:01:26,535   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,535    1316 |  if(size3>xfp->buf1size)
2023-10-12T14:01:26,535         |     ~~~~~^~~~~~~~~~~~~~
2023-10-12T14:01:26,536   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,537    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-12T14:01:26,537         |                   ^
2023-10-12T14:01:26,539   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-12T14:01:26,539    1289 |  int smallidx,  maxidx, minidx;
2023-10-12T14:01:26,540         |                         ^~~~~~
2023-10-12T14:01:26,540   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-12T14:01:26,540    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-12T14:01:26,540         |                         ^~~~~~
2023-10-12T14:01:26,540   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-12T14:01:26,540    1297 |  int errval=1;
2023-10-12T14:01:26,541         |      ^~~~~~
2023-10-12T14:01:26,541   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-12T14:01:26,542   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,542    1513 |  if(size3>xfp->buf1size) {
2023-10-12T14:01:26,542         |     ~~~~~^~~~~~~~~~~~~~
2023-10-12T14:01:26,546   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,546    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-12T14:01:26,546         |                  ^
2023-10-12T14:01:26,546   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-12T14:01:26,546    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-12T14:01:26,547         |                   ^
2023-10-12T14:01:26,550   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-12T14:01:26,550    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-12T14:01:26,550         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-12T14:01:26,551   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-12T14:01:26,551    1504 |  int errval=1;
2023-10-12T14:01:26,551         |      ^~~~~~
2023-10-12T14:01:28,779   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-12T14:01:29,037   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-12T14:01:29,611   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-12T14:01:29,611   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-12T14:01:29,611     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-12T14:01:29,611         |      ^~~
2023-10-12T14:01:29,617   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-12T14:01:29,618   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-12T14:01:29,618     418 |  int nf3 = nframes * 3;
2023-10-12T14:01:29,618         |      ^~~
2023-10-12T14:01:29,622   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-12T14:01:29,622   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-12T14:01:29,623     491 |  int reading_index = 0;
2023-10-12T14:01:29,623         |      ^~~~~~~~~~~~~
2023-10-12T14:01:29,623   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-12T14:01:29,623     492 |  int writing_index = 0;
2023-10-12T14:01:29,623         |      ^~~~~~~~~~~~~
2023-10-12T14:01:30,379   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-12T14:01:30,618   In file included from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-12T14:01:30,618                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-12T14:01:30,618                    from /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-12T14:01:30,618                    from moleculekit/xtc_utils/xtc.cpp:1223:
2023-10-12T14:01:30,618   /tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-12T14:01:30,618      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-12T14:01:30,618         |  ^~~~~~~
2023-10-12T14:01:50,723   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-12T14:01:51,043   building 'moleculekit.tmalign' extension
2023-10-12T14:01:51,044   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-12T14:01:51,045   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-12T14:01:51,046   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-12T14:02:20,438   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-7_5k50ch/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-12T14:02:38,920   In file included from /usr/include/c++/10/vector:72,
2023-10-12T14:02:38,920                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-12T14:02:38,920   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-12T14:02:38,920   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-12T14:02:38,920     426 |       vector<_Tp, _Alloc>::
2023-10-12T14:02:38,921         |       ^~~~~~~~~~~~~~~~~~~
2023-10-12T14:02:39,499   In file included from /usr/include/c++/10/vector:67,
2023-10-12T14:02:39,500                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-12T14:02:39,500   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-12T14:02:39,500   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-12T14:02:39,500    1198 |    _M_realloc_insert(end(), __x);
2023-10-12T14:02:39,500         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-12T14:02:39,500   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-12T14:02:39,501    1198 |    _M_realloc_insert(end(), __x);
2023-10-12T14:02:39,501         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-12T14:02:39,501   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-12T14:02:39,501    1198 |    _M_realloc_insert(end(), __x);
2023-10-12T14:02:39,502         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-12T14:02:41,895   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-12T14:02:42,344   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-12T14:02:42,344   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.2'
2023-10-12T14:02:42,345   installing to build/bdist.linux-armv7l/wheel
2023-10-12T14:02:42,345   running install
2023-10-12T14:02:42,370   running install_lib
2023-10-12T14:02:42,376   creating build/bdist.linux-armv7l
2023-10-12T14:02:42,376   creating build/bdist.linux-armv7l/wheel
2023-10-12T14:02:42,378   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,382   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,403   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-12T14:02:42,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-12T14:02:42,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-12T14:02:42,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-12T14:02:42,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,423   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,448   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-12T14:02:42,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-12T14:02:42,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-12T14:02:42,472   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-12T14:02:42,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-12T14:02:42,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-12T14:02:42,496   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-12T14:02:42,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-12T14:02:42,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-12T14:02:42,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,568   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-12T14:02:42,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-12T14:02:42,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-12T14:02:42,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-12T14:02:42,619   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-12T14:02:42,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-12T14:02:42,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-12T14:02:42,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,642   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-12T14:02:42,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-12T14:02:42,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-12T14:02:42,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-12T14:02:42,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-12T14:02:42,651   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-12T14:02:42,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-12T14:02:42,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-12T14:02:42,656   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-12T14:02:42,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-12T14:02:42,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-12T14:02:42,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-12T14:02:42,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-12T14:02:42,691   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-12T14:02:42,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-12T14:02:42,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-12T14:02:42,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-12T14:02:42,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,700   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-12T14:02:42,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-12T14:02:42,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-12T14:02:42,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-12T14:02:42,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,712   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-12T14:02:42,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-12T14:02:42,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-12T14:02:42,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,756   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-12T14:02:42,757   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-12T14:02:42,758   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-12T14:02:42,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-12T14:02:42,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-12T14:02:42,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-12T14:02:42,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-12T14:02:42,767   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-12T14:02:42,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-12T14:02:42,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-12T14:02:42,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-12T14:02:42,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-12T14:02:42,777   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-12T14:02:42,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-12T14:02:42,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-12T14:02:42,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,786   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-12T14:02:42,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-12T14:02:42,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-12T14:02:42,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,828   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,830   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-12T14:02:42,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-12T14:02:42,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-12T14:02:42,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-12T14:02:42,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-12T14:02:42,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-12T14:02:42,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:42,961   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-12T14:02:42,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-12T14:02:42,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-12T14:02:42,990   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-12T14:02:42,992   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-12T14:02:42,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-12T14:02:42,996   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-12T14:02:43,001   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-12T14:02:43,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,238   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,342   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,344   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-12T14:02:43,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-12T14:02:43,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-12T14:02:43,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-12T14:02:43,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,558   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-12T14:02:43,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,642   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-12T14:02:43,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-12T14:02:43,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-12T14:02:43,667   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-12T14:02:43,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-12T14:02:43,674   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-12T14:02:43,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-12T14:02:43,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-12T14:02:43,680   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-12T14:02:43,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-12T14:02:43,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-12T14:02:43,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-12T14:02:43,741   running install_egg_info
2023-10-12T14:02:43,747   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.2-py3.9.egg-info
2023-10-12T14:02:43,760   running install_scripts
2023-10-12T14:02:43,816   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.2.dist-info/WHEEL
2023-10-12T14:02:43,820   creating '/tmp/pip-wheel-5mcrvm54/.tmp-_2ox65fk/moleculekit-1.8.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-12T14:02:43,824   adding 'moleculekit/__init__.py'
2023-10-12T14:02:43,825   adding 'moleculekit/_version.py'
2023-10-12T14:02:43,828   adding 'moleculekit/align.py'
2023-10-12T14:02:44,170   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:44,182   adding 'moleculekit/bondguesser.py'
2023-10-12T14:02:44,428   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:44,436   adding 'moleculekit/config.py'
2023-10-12T14:02:44,438   adding 'moleculekit/dihedral.py'
2023-10-12T14:02:44,439   adding 'moleculekit/distance.py'
2023-10-12T14:02:44,750   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:44,761   adding 'moleculekit/home.py'
2023-10-12T14:02:44,762   adding 'moleculekit/logging.ini'
2023-10-12T14:02:44,776   adding 'moleculekit/molecule.py'
2023-10-12T14:02:45,005   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:45,014   adding 'moleculekit/opm.py'
2023-10-12T14:02:45,016   adding 'moleculekit/periodictable.py'
2023-10-12T14:02:45,017   adding 'moleculekit/pymolgraphics.py'
2023-10-12T14:02:45,019   adding 'moleculekit/rcsb.py'
2023-10-12T14:02:45,020   adding 'moleculekit/rdkitintegration.py'
2023-10-12T14:02:45,032   adding 'moleculekit/readers.py'
2023-10-12T14:02:45,646   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:45,670   adding 'moleculekit/util.py'
2023-10-12T14:02:45,673   adding 'moleculekit/version.py'
2023-10-12T14:02:45,674   adding 'moleculekit/viewer.py'
2023-10-12T14:02:45,676   adding 'moleculekit/vmd_wrapper'
2023-10-12T14:02:45,678   adding 'moleculekit/vmdgraphics.py'
2023-10-12T14:02:45,680   adding 'moleculekit/vmdviewer.py'
2023-10-12T14:02:45,916   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:45,928   adding 'moleculekit/writers.py'
2023-10-12T14:02:46,199   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:46,209   adding 'moleculekit/atomselect/__init__.py'
2023-10-12T14:02:46,210   adding 'moleculekit/atomselect/analyze.py'
2023-10-12T14:02:46,213   adding 'moleculekit/atomselect/atomselect.py'
2023-10-12T14:02:46,215   adding 'moleculekit/atomselect/languageparser.py'
2023-10-12T14:02:46,321   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-12T14:02:46,332   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-12T14:02:46,425   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-12T14:02:46,434   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-12T14:02:46,535   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-12T14:02:46,544   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-12T14:02:46,546   adding 'moleculekit/interactions/__init__.py'
2023-10-12T14:02:46,837   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:47,109   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:47,121   adding 'moleculekit/interactions/interactions.py'
2023-10-12T14:02:47,405   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:47,697   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-12T14:02:47,800   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-12T14:02:47,809   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-12T14:02:47,902   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-12T14:02:47,910   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-12T14:02:48,004   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-12T14:02:48,013   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-12T14:02:48,106   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-12T14:02:48,115   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-12T14:02:48,204   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-12T14:02:48,212   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-12T14:02:48,214   adding 'moleculekit/pdbx/__init__.py'
2023-10-12T14:02:48,217   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-12T14:02:48,220   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-12T14:02:48,223   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-12T14:02:48,224   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-12T14:02:48,226   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-12T14:02:48,228   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-12T14:02:48,229   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-12T14:02:48,230   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-12T14:02:48,232   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-12T14:02:48,233   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-12T14:02:48,235   adding 'moleculekit/ply/__init__.py'
2023-10-12T14:02:48,239   adding 'moleculekit/ply/lex.py'
2023-10-12T14:02:48,251   adding 'moleculekit/ply/yacc.py'
2023-10-12T14:02:48,254   adding 'moleculekit/projections/__init__.py'
2023-10-12T14:02:48,256   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-12T14:02:48,259   adding 'moleculekit/projections/metricdihedral.py'
2023-10-12T14:02:48,263   adding 'moleculekit/projections/metricdistance.py'
2023-10-12T14:02:48,266   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-12T14:02:48,267   adding 'moleculekit/projections/metricgyration.py'
2023-10-12T14:02:48,271   adding 'moleculekit/projections/metricplumed2.py'
2023-10-12T14:02:48,273   adding 'moleculekit/projections/metricrmsd.py'
2023-10-12T14:02:48,275   adding 'moleculekit/projections/metricsasa.py'
2023-10-12T14:02:48,277   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-12T14:02:48,279   adding 'moleculekit/projections/metricshell.py'
2023-10-12T14:02:48,281   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-12T14:02:48,282   adding 'moleculekit/projections/metrictmscore.py'
2023-10-12T14:02:48,284   adding 'moleculekit/projections/projection.py'
2023-10-12T14:02:48,286   adding 'moleculekit/projections/util.py'
2023-10-12T14:02:48,288   adding 'moleculekit/share/ALA.cif'
2023-10-12T14:02:48,289   adding 'moleculekit/share/backbone.cif'
2023-10-12T14:02:49,597   adding 'moleculekit/share/opm_sequences.json'
2023-10-12T14:02:49,682   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-12T14:02:49,687   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-12T14:02:49,688   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-12T14:02:49,690   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-12T14:02:49,691   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-12T14:02:49,692   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-12T14:02:49,693   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-12T14:02:49,694   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-12T14:02:49,696   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-12T14:02:49,697   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-12T14:02:49,698   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-12T14:02:49,700   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-12T14:02:49,701   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-12T14:02:49,702   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-12T14:02:49,703   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-12T14:02:49,704   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-12T14:02:49,706   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-12T14:02:49,707   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-12T14:02:49,708   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-12T14:02:49,709   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-12T14:02:49,711   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-12T14:02:49,712   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-12T14:02:49,713   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-12T14:02:49,714   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-12T14:02:49,716   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-12T14:02:49,717   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-12T14:02:49,718   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-12T14:02:49,719   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-12T14:02:49,720   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-12T14:02:49,722   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-12T14:02:49,723   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-12T14:02:49,724   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-12T14:02:49,725   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-12T14:02:49,726   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-12T14:02:49,728   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-12T14:02:49,729   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-12T14:02:49,730   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-12T14:02:49,731   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-12T14:02:49,733   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-12T14:02:49,734   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-12T14:02:49,735   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-12T14:02:49,737   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-12T14:02:49,738   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-12T14:02:49,739   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-12T14:02:49,741   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-12T14:02:49,742   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-12T14:02:49,743   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-12T14:02:49,745   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-12T14:02:49,746   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-12T14:02:49,747   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-12T14:02:49,749   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-12T14:02:49,750   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-12T14:02:49,751   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-12T14:02:49,752   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-12T14:02:49,754   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-12T14:02:49,755   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-12T14:02:49,756   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-12T14:02:49,757   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-12T14:02:49,758   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-12T14:02:49,760   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-12T14:02:49,761   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-12T14:02:49,762   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-12T14:02:49,763   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-12T14:02:49,764   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-12T14:02:49,766   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-12T14:02:49,767   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-12T14:02:49,768   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-12T14:02:49,769   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-12T14:02:49,770   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-12T14:02:49,772   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-12T14:02:49,773   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-12T14:02:49,774   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-12T14:02:49,775   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-12T14:02:49,777   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-12T14:02:49,778   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-12T14:02:49,779   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-12T14:02:49,780   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-12T14:02:49,781   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-12T14:02:49,783   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-12T14:02:49,784   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-12T14:02:49,785   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-12T14:02:49,786   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-12T14:02:49,788   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-12T14:02:49,789   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-12T14:02:49,790   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-12T14:02:49,791   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-12T14:02:49,793   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-12T14:02:49,794   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-12T14:02:49,795   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-12T14:02:49,796   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-12T14:02:49,798   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-12T14:02:49,799   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-12T14:02:49,800   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-12T14:02:49,801   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-12T14:02:49,803   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-12T14:02:49,804   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-12T14:02:49,805   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-12T14:02:49,806   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-12T14:02:49,808   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-12T14:02:49,809   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-12T14:02:49,810   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-12T14:02:49,811   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-12T14:02:49,813   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-12T14:02:49,814   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-12T14:02:49,815   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-12T14:02:49,817   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-12T14:02:49,818   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-12T14:02:49,819   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-12T14:02:49,820   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-12T14:02:49,822   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-12T14:02:49,823   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-12T14:02:49,824   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-12T14:02:49,825   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-12T14:02:49,827   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-12T14:02:49,828   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-12T14:02:49,829   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-12T14:02:49,830   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-12T14:02:49,832   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-12T14:02:49,833   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-12T14:02:49,834   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-12T14:02:49,835   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-12T14:02:49,837   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-12T14:02:49,838   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-12T14:02:49,839   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-12T14:02:49,840   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-12T14:02:49,843   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-12T14:02:49,845   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-12T14:02:49,846   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-12T14:02:49,847   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-12T14:02:49,848   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-12T14:02:49,850   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-12T14:02:49,851   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-12T14:02:49,852   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-12T14:02:49,853   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-12T14:02:49,855   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-12T14:02:49,856   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-12T14:02:49,857   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-12T14:02:49,858   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-12T14:02:49,860   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-12T14:02:49,861   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-12T14:02:49,862   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-12T14:02:49,863   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-12T14:02:49,864   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-12T14:02:49,866   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-12T14:02:49,867   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-12T14:02:49,868   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-12T14:02:49,869   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-12T14:02:49,871   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-12T14:02:49,872   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-12T14:02:49,873   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-12T14:02:49,874   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-12T14:02:49,875   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-12T14:02:49,877   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-12T14:02:49,878   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-12T14:02:49,879   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-12T14:02:49,881   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-12T14:02:49,882   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-12T14:02:49,883   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-12T14:02:49,884   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-12T14:02:49,886   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-12T14:02:49,887   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-12T14:02:49,888   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-12T14:02:49,889   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-12T14:02:49,891   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-12T14:02:49,892   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-12T14:02:49,893   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-12T14:02:49,894   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-12T14:02:49,896   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-12T14:02:49,897   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-12T14:02:49,898   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-12T14:02:49,899   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-12T14:02:49,901   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-12T14:02:49,902   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-12T14:02:49,903   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-12T14:02:49,904   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-12T14:02:49,906   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-12T14:02:49,908   adding 'moleculekit/smallmol/__init__.py'
2023-10-12T14:02:49,913   adding 'moleculekit/smallmol/smallmol.py'
2023-10-12T14:02:49,916   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-12T14:02:49,917   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-12T14:02:49,919   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-12T14:02:49,921   adding 'moleculekit/smallmol/util.py'
2023-10-12T14:02:49,923   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-12T14:02:49,925   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-12T14:02:49,926   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-12T14:02:49,928   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-12T14:02:50,019   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-12T14:02:50,028   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-12T14:02:50,029   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-12T14:02:50,031   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-12T14:02:50,052   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-12T14:02:50,055   adding 'moleculekit/tools/__init__.py'
2023-10-12T14:02:50,058   adding 'moleculekit/tools/atomtyper.py'
2023-10-12T14:02:50,060   adding 'moleculekit/tools/autosegment.py'
2023-10-12T14:02:50,062   adding 'moleculekit/tools/crystalpacking.py'
2023-10-12T14:02:50,066   adding 'moleculekit/tools/detect.py'
2023-10-12T14:02:50,068   adding 'moleculekit/tools/docking.py'
2023-10-12T14:02:50,070   adding 'moleculekit/tools/graphalignment.py'
2023-10-12T14:02:50,071   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-12T14:02:50,073   adding 'moleculekit/tools/moleculechecks.py'
2023-10-12T14:02:50,080   adding 'moleculekit/tools/preparation.py'
2023-10-12T14:02:50,083   adding 'moleculekit/tools/preparation_customres.py'
2023-10-12T14:02:50,084   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-12T14:02:50,088   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-12T14:02:50,090   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-12T14:02:50,091   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-12T14:02:50,181   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-12T14:02:50,190   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-12T14:02:50,281   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-12T14:02:50,290   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-12T14:02:50,291   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-12T14:02:50,294   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-12T14:02:50,296   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-12T14:02:50,297   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-12T14:02:50,305   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-12T14:02:50,307   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-12T14:02:50,309   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-12T14:02:50,311   adding 'moleculekit-1.8.2.dist-info/LICENSE'
2023-10-12T14:02:50,313   adding 'moleculekit-1.8.2.dist-info/METADATA'
2023-10-12T14:02:50,314   adding 'moleculekit-1.8.2.dist-info/WHEEL'
2023-10-12T14:02:50,315   adding 'moleculekit-1.8.2.dist-info/top_level.txt'
2023-10-12T14:02:50,319   adding 'moleculekit-1.8.2.dist-info/RECORD'
2023-10-12T14:02:50,460   removing build/bdist.linux-armv7l/wheel
2023-10-12T14:02:50,734   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-12T14:02:50,988   Created wheel for moleculekit: filename=moleculekit-1.8.2-cp39-cp39-linux_armv7l.whl size=12562146 sha256=334db9e2327cfef0e77f530ec4271743aed078de99591d9d2d976cbe1422cf15
2023-10-12T14:02:50,990   Stored in directory: /tmp/pip-ephem-wheel-cache-q5qza33_/wheels/76/71/d3/3eb89b2462a1ab1faaf040f3389044b61e21a2653ffdfe60c1
2023-10-12T14:02:51,025 Successfully built moleculekit
2023-10-12T14:02:51,342 Removed build tracker: '/tmp/pip-build-tracker-ouwmsl82'