2023-10-13T15:49:51,521 Created temporary directory: /tmp/pip-build-tracker-35pv7sgu 2023-10-13T15:49:51,522 Initialized build tracking at /tmp/pip-build-tracker-35pv7sgu 2023-10-13T15:49:51,523 Created build tracker: /tmp/pip-build-tracker-35pv7sgu 2023-10-13T15:49:51,523 Entered build tracker: /tmp/pip-build-tracker-35pv7sgu 2023-10-13T15:49:51,524 Created temporary directory: /tmp/pip-wheel-3dbq1tmn 2023-10-13T15:49:51,527 Created temporary directory: /tmp/pip-ephem-wheel-cache-n3mi02pl 2023-10-13T15:49:51,550 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-13T15:49:51,554 2 location(s) to search for versions of bluepyemodel: 2023-10-13T15:49:51,554 * https://pypi.org/simple/bluepyemodel/ 2023-10-13T15:49:51,554 * https://www.piwheels.org/simple/bluepyemodel/ 2023-10-13T15:49:51,555 Fetching project page and analyzing links: https://pypi.org/simple/bluepyemodel/ 2023-10-13T15:49:51,556 Getting page https://pypi.org/simple/bluepyemodel/ 2023-10-13T15:49:51,558 Found index url https://pypi.org/simple/ 2023-10-13T15:49:51,790 Fetched page https://pypi.org/simple/bluepyemodel/ as application/vnd.pypi.simple.v1+json 2023-10-13T15:49:51,801 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/77/ae/9e95ea0862330f97262af1bbd4317f66be2f17c82edf0a0c990552195635/bluepyemodel-0.0.16-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-10-13T15:49:51,802 Found link https://files.pythonhosted.org/packages/4e/bf/b26fd0e56561c6d04a5b8ddc69939b8302f33583126137055fa6e7a93a0a/bluepyemodel-0.0.16.tar.gz (from https://pypi.org/simple/bluepyemodel/), version: 0.0.16 2023-10-13T15:49:51,803 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/44/fd/556856c23025b90629675089e6058238fe2723b52a34b2ceabd04403e3c6/bluepyemodel-0.0.17-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-10-13T15:49:51,804 Found link 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https://files.pythonhosted.org/packages/9d/7c/7e575d4a7106b11cedffc48e0eadfea3648a56f1bda9d2f5908071b862fd/bluepyemodel-0.0.45.tar.gz (from https://pypi.org/simple/bluepyemodel/), version: 0.0.45 2023-10-13T15:49:51,843 Fetching project page and analyzing links: https://www.piwheels.org/simple/bluepyemodel/ 2023-10-13T15:49:51,844 Getting page https://www.piwheels.org/simple/bluepyemodel/ 2023-10-13T15:49:51,845 Found index url https://www.piwheels.org/simple/ 2023-10-13T15:49:52,012 Fetched page https://www.piwheels.org/simple/bluepyemodel/ as text/html 2023-10-13T15:49:52,021 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.44-py3-none-any.whl#sha256=50d26ee6cfcbf034680774a9322f420f25a9836b5f4dd10ceaf7c54cad571e79 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-13T15:49:52,022 Skipping link: No binaries permitted for bluepyemodel: 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https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.16-py3-none-any.whl#sha256=1320b98733e0bc6ad9ce13b5dd897b4bc81267c1b828fb41ef6efc85571130d0 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-13T15:49:52,038 Skipping link: not a file: https://www.piwheels.org/simple/bluepyemodel/ 2023-10-13T15:49:52,039 Skipping link: not a file: https://pypi.org/simple/bluepyemodel/ 2023-10-13T15:49:52,061 Given no hashes to check 1 links for project 'bluepyemodel': discarding no candidates 2023-10-13T15:49:52,079 Collecting bluepyemodel==0.0.45 2023-10-13T15:49:52,082 Created temporary directory: /tmp/pip-unpack-dim5qjso 2023-10-13T15:49:52,300 Downloading bluepyemodel-0.0.45.tar.gz (13.0 MB) 2023-10-13T15:49:56,575 Added bluepyemodel==0.0.45 from https://files.pythonhosted.org/packages/9d/7c/7e575d4a7106b11cedffc48e0eadfea3648a56f1bda9d2f5908071b862fd/bluepyemodel-0.0.45.tar.gz to build tracker '/tmp/pip-build-tracker-35pv7sgu' 2023-10-13T15:49:56,577 Running setup.py (path:/tmp/pip-wheel-3dbq1tmn/bluepyemodel_54ffb0ea91954539b88e759994d7c98b/setup.py) egg_info for package bluepyemodel 2023-10-13T15:49:56,577 Created temporary directory: /tmp/pip-pip-egg-info-tdb0tsj5 2023-10-13T15:49:56,578 Preparing metadata (setup.py): started 2023-10-13T15:49:56,579 Running command python setup.py egg_info 2023-10-13T15:49:56,989 /tmp/pip-wheel-3dbq1tmn/bluepyemodel_54ffb0ea91954539b88e759994d7c98b/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-10-13T15:49:56,989 import imp 2023-10-13T15:49:57,279 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-13T15:49:57,280 !! 2023-10-13T15:49:57,281 ******************************************************************************** 2023-10-13T15:49:57,281 Requirements should be satisfied by a PEP 517 installer. 2023-10-13T15:49:57,282 If you are using pip, you can try `pip install --use-pep517`. 2023-10-13T15:49:57,283 ******************************************************************************** 2023-10-13T15:49:57,284 !! 2023-10-13T15:49:57,285 dist.fetch_build_eggs(dist.setup_requires) 2023-10-13T15:50:00,348 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-10-13T15:50:00,453 running egg_info 2023-10-13T15:50:00,455 creating /tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info 2023-10-13T15:50:00,482 writing /tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/PKG-INFO 2023-10-13T15:50:00,491 writing dependency_links to /tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/dependency_links.txt 2023-10-13T15:50:00,496 writing requirements to /tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/requires.txt 2023-10-13T15:50:00,498 writing top-level names to /tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/top_level.txt 2023-10-13T15:50:00,499 writing manifest file '/tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/SOURCES.txt' 2023-10-13T15:50:00,685 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-13T15:50:00,692 reading manifest file '/tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/SOURCES.txt' 2023-10-13T15:50:00,693 reading manifest template 'MANIFEST.in' 2023-10-13T15:50:00,694 adding license file 'LICENSE.txt' 2023-10-13T15:50:00,695 adding license file 'COPYING' 2023-10-13T15:50:00,696 adding license file 'AUTHORS.txt' 2023-10-13T15:50:00,699 writing manifest file '/tmp/pip-pip-egg-info-tdb0tsj5/bluepyemodel.egg-info/SOURCES.txt' 2023-10-13T15:50:00,817 Preparing metadata (setup.py): finished with status 'done' 2023-10-13T15:50:00,821 Source in /tmp/pip-wheel-3dbq1tmn/bluepyemodel_54ffb0ea91954539b88e759994d7c98b has version 0.0.45, which satisfies requirement bluepyemodel==0.0.45 from https://files.pythonhosted.org/packages/9d/7c/7e575d4a7106b11cedffc48e0eadfea3648a56f1bda9d2f5908071b862fd/bluepyemodel-0.0.45.tar.gz 2023-10-13T15:50:00,822 Removed bluepyemodel==0.0.45 from https://files.pythonhosted.org/packages/9d/7c/7e575d4a7106b11cedffc48e0eadfea3648a56f1bda9d2f5908071b862fd/bluepyemodel-0.0.45.tar.gz from build tracker '/tmp/pip-build-tracker-35pv7sgu' 2023-10-13T15:50:00,827 Created temporary directory: /tmp/pip-unpack-yhn_hbqn 2023-10-13T15:50:00,828 Created temporary directory: /tmp/pip-unpack-0mq3hiph 2023-10-13T15:50:00,889 Building wheels for collected packages: bluepyemodel 2023-10-13T15:50:00,892 Created temporary directory: /tmp/pip-wheel-5ov8h56j 2023-10-13T15:50:00,893 Building wheel for bluepyemodel (setup.py): started 2023-10-13T15:50:00,894 Destination directory: /tmp/pip-wheel-5ov8h56j 2023-10-13T15:50:00,895 Running command python setup.py bdist_wheel 2023-10-13T15:50:01,298 /tmp/pip-wheel-3dbq1tmn/bluepyemodel_54ffb0ea91954539b88e759994d7c98b/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-10-13T15:50:01,298 import imp 2023-10-13T15:50:01,575 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-13T15:50:01,576 !! 2023-10-13T15:50:01,577 ******************************************************************************** 2023-10-13T15:50:01,577 Requirements should be satisfied by a PEP 517 installer. 2023-10-13T15:50:01,578 If you are using pip, you can try `pip install --use-pep517`. 2023-10-13T15:50:01,578 ******************************************************************************** 2023-10-13T15:50:01,579 !! 2023-10-13T15:50:01,580 dist.fetch_build_eggs(dist.setup_requires) 2023-10-13T15:50:02,104 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-10-13T15:50:02,200 running bdist_wheel 2023-10-13T15:50:02,303 running build 2023-10-13T15:50:02,303 running build_py 2023-10-13T15:50:02,332 creating build 2023-10-13T15:50:02,333 creating build/lib 2023-10-13T15:50:02,334 creating build/lib/tests 2023-10-13T15:50:02,335 copying tests/__init__.py -> build/lib/tests 2023-10-13T15:50:02,337 creating build/lib/bluepyemodel 2023-10-13T15:50:02,338 copying bluepyemodel/__init__.py -> build/lib/bluepyemodel 2023-10-13T15:50:02,340 creating build/lib/tests/functional_tests 2023-10-13T15:50:02,341 copying tests/functional_tests/test_validation.py -> build/lib/tests/functional_tests 2023-10-13T15:50:02,343 copying tests/functional_tests/__init__.py -> build/lib/tests/functional_tests 2023-10-13T15:50:02,345 copying tests/functional_tests/test_protocols.py -> build/lib/tests/functional_tests 2023-10-13T15:50:02,348 creating build/lib/tests/unit_tests 2023-10-13T15:50:02,349 copying tests/unit_tests/test_tools.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,350 copying tests/unit_tests/test_ecodes.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,353 copying tests/unit_tests/test_emodelmetadata.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,355 copying tests/unit_tests/test_local_access_point.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,357 copying tests/unit_tests/test_optimisation.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,358 copying tests/unit_tests/__init__.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,360 copying tests/unit_tests/test_targets_configuration.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,362 copying tests/unit_tests/test_fitness_calculator_configuration.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,364 copying tests/unit_tests/test_evaluator.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,366 copying tests/unit_tests/test_model_parameters_configuration.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,368 copying tests/unit_tests/test_validation_functions.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,370 copying tests/unit_tests/test_model.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,371 copying tests/unit_tests/test_plotting.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,373 copying tests/unit_tests/test_emodel_pipeline.py -> build/lib/tests/unit_tests 2023-10-13T15:50:02,375 creating build/lib/tests/test_models 2023-10-13T15:50:02,376 copying tests/test_models/dummycells.py -> build/lib/tests/test_models 2023-10-13T15:50:02,377 copying tests/test_models/__init__.py -> build/lib/tests/test_models 2023-10-13T15:50:02,379 creating build/lib/bluepyemodel/export_emodel 2023-10-13T15:50:02,380 copying bluepyemodel/export_emodel/utils.py -> build/lib/bluepyemodel/export_emodel 2023-10-13T15:50:02,382 copying bluepyemodel/export_emodel/export_emodel.py -> build/lib/bluepyemodel/export_emodel 2023-10-13T15:50:02,384 copying bluepyemodel/export_emodel/__init__.py -> build/lib/bluepyemodel/export_emodel 2023-10-13T15:50:02,386 creating build/lib/bluepyemodel/tasks 2023-10-13T15:50:02,387 copying bluepyemodel/tasks/config.py -> build/lib/bluepyemodel/tasks 2023-10-13T15:50:02,389 copying bluepyemodel/tasks/luigi_custom.py -> build/lib/bluepyemodel/tasks 2023-10-13T15:50:02,390 copying bluepyemodel/tasks/luigi_tools.py -> build/lib/bluepyemodel/tasks 2023-10-13T15:50:02,392 copying bluepyemodel/tasks/__init__.py -> build/lib/bluepyemodel/tasks 2023-10-13T15:50:02,395 creating build/lib/bluepyemodel/optimisation 2023-10-13T15:50:02,395 copying bluepyemodel/optimisation/__init__.py -> build/lib/bluepyemodel/optimisation 2023-10-13T15:50:02,397 copying bluepyemodel/optimisation/optimisation.py -> build/lib/bluepyemodel/optimisation 2023-10-13T15:50:02,400 creating build/lib/bluepyemodel/tools 2023-10-13T15:50:02,401 copying bluepyemodel/tools/utils.py -> build/lib/bluepyemodel/tools 2023-10-13T15:50:02,403 copying bluepyemodel/tools/mechanisms.py -> build/lib/bluepyemodel/tools 2023-10-13T15:50:02,405 copying bluepyemodel/tools/morphology.py -> build/lib/bluepyemodel/tools 2023-10-13T15:50:02,407 copying bluepyemodel/tools/search_pdfs.py -> build/lib/bluepyemodel/tools 2023-10-13T15:50:02,408 copying bluepyemodel/tools/__init__.py -> build/lib/bluepyemodel/tools 2023-10-13T15:50:02,410 copying bluepyemodel/tools/multiprocessing.py -> build/lib/bluepyemodel/tools 2023-10-13T15:50:02,412 creating build/lib/bluepyemodel/access_point 2023-10-13T15:50:02,413 copying bluepyemodel/access_point/access_point.py -> build/lib/bluepyemodel/access_point 2023-10-13T15:50:02,415 copying bluepyemodel/access_point/__init__.py -> build/lib/bluepyemodel/access_point 2023-10-13T15:50:02,417 copying bluepyemodel/access_point/local.py -> build/lib/bluepyemodel/access_point 2023-10-13T15:50:02,420 creating build/lib/bluepyemodel/validation 2023-10-13T15:50:02,421 copying bluepyemodel/validation/validation.py -> build/lib/bluepyemodel/validation 2023-10-13T15:50:02,423 copying bluepyemodel/validation/__init__.py -> build/lib/bluepyemodel/validation 2023-10-13T15:50:02,425 copying bluepyemodel/validation/validation_functions.py -> build/lib/bluepyemodel/validation 2023-10-13T15:50:02,428 creating build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,429 copying bluepyemodel/ecode/sahp.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,431 copying bluepyemodel/ecode/dendrite.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,433 copying bluepyemodel/ecode/iv.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,435 copying bluepyemodel/ecode/firepattern.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,436 copying bluepyemodel/ecode/noiseou3.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,438 copying bluepyemodel/ecode/random_square_inputs.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,440 copying bluepyemodel/ecode/dehyperpol.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,442 copying bluepyemodel/ecode/apwaveform.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,443 copying bluepyemodel/ecode/idrest.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,445 copying bluepyemodel/ecode/poscheops.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,447 copying bluepyemodel/ecode/probampanmda_ems.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,449 copying bluepyemodel/ecode/spikerec.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,451 copying bluepyemodel/ecode/subwhitenoise.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,453 copying bluepyemodel/ecode/__init__.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,454 copying bluepyemodel/ecode/sinespec.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,456 copying bluepyemodel/ecode/comb.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,457 copying bluepyemodel/ecode/stimulus.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,459 copying bluepyemodel/ecode/hyperdepol.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,461 copying bluepyemodel/ecode/negcheops.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,463 copying bluepyemodel/ecode/customfromfile.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,465 copying bluepyemodel/ecode/noise.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,466 copying bluepyemodel/ecode/ramp.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,469 copying bluepyemodel/ecode/whitenoise.py -> build/lib/bluepyemodel/ecode 2023-10-13T15:50:02,471 creating build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,472 copying bluepyemodel/emodel_pipeline/emodel.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,474 copying bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,476 copying bluepyemodel/emodel_pipeline/emodel_settings.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,479 copying bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,481 copying bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,483 copying bluepyemodel/emodel_pipeline/__init__.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,484 copying bluepyemodel/emodel_pipeline/emodel_script.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,486 copying bluepyemodel/emodel_pipeline/plotting.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-13T15:50:02,489 creating build/lib/bluepyemodel/model 2023-10-13T15:50:02,490 copying bluepyemodel/model/neuron_model_configuration.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,493 copying bluepyemodel/model/model_configurator.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,495 copying bluepyemodel/model/model.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,497 copying bluepyemodel/model/utils.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,499 copying bluepyemodel/model/distribution_configuration.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,501 copying bluepyemodel/model/model_configuration.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,502 copying bluepyemodel/model/parameter_configuration.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,504 copying bluepyemodel/model/morphology_configuration.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,506 copying bluepyemodel/model/mechanism_configuration.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,507 copying bluepyemodel/model/__init__.py -> build/lib/bluepyemodel/model 2023-10-13T15:50:02,510 creating build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,510 copying bluepyemodel/efeatures_extraction/target.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,512 copying bluepyemodel/efeatures_extraction/auto_targets.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,514 copying bluepyemodel/efeatures_extraction/targets_configuration.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,516 copying bluepyemodel/efeatures_extraction/targets_configurator.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,518 copying bluepyemodel/efeatures_extraction/__init__.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,519 copying bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,522 copying bluepyemodel/efeatures_extraction/trace_file.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-13T15:50:02,524 creating build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,524 copying bluepyemodel/evaluation/evaluation.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,527 copying bluepyemodel/evaluation/efel_feature_bpem.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,529 copying bluepyemodel/evaluation/protocols.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,531 copying bluepyemodel/evaluation/protocol_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,533 copying bluepyemodel/evaluation/recordings.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,535 copying bluepyemodel/evaluation/efeature_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,537 copying bluepyemodel/evaluation/modifiers.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,539 copying bluepyemodel/evaluation/__init__.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,541 copying bluepyemodel/evaluation/evaluator.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,543 copying bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-13T15:50:02,546 creating build/lib/bluepyemodel/tasks/emodel_creation 2023-10-13T15:50:02,547 copying bluepyemodel/tasks/emodel_creation/__init__.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-10-13T15:50:02,549 copying bluepyemodel/tasks/emodel_creation/optimisation.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-10-13T15:50:02,551 running egg_info 2023-10-13T15:50:02,605 writing bluepyemodel.egg-info/PKG-INFO 2023-10-13T15:50:02,613 writing dependency_links to bluepyemodel.egg-info/dependency_links.txt 2023-10-13T15:50:02,618 writing requirements to bluepyemodel.egg-info/requires.txt 2023-10-13T15:50:02,619 writing top-level names to bluepyemodel.egg-info/top_level.txt 2023-10-13T15:50:02,717 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-13T15:50:02,720 reading manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-10-13T15:50:02,738 reading manifest template 'MANIFEST.in' 2023-10-13T15:50:02,738 adding license file 'LICENSE.txt' 2023-10-13T15:50:02,739 adding license file 'COPYING' 2023-10-13T15:50:02,740 adding license file 'AUTHORS.txt' 2023-10-13T15:50:02,747 writing manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-10-13T15:50:02,750 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.ecode.data' is absent from the `packages` configuration. 2023-10-13T15:50:02,751 !! 2023-10-13T15:50:02,752 ******************************************************************************** 2023-10-13T15:50:02,752 ############################ 2023-10-13T15:50:02,753 # Package would be ignored # 2023-10-13T15:50:02,753 ############################ 2023-10-13T15:50:02,754 Python recognizes 'bluepyemodel.ecode.data' as an importable package[^1], 2023-10-13T15:50:02,754 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,756 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,756 package, please make sure that 'bluepyemodel.ecode.data' is explicitly added 2023-10-13T15:50:02,757 to the `packages` configuration field. 2023-10-13T15:50:02,758 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,759 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,760 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,761 If you don't want 'bluepyemodel.ecode.data' to be distributed and are 2023-10-13T15:50:02,762 already explicitly excluding 'bluepyemodel.ecode.data' via 2023-10-13T15:50:02,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,763 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,764 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,767 even if it does not contain any `.py` files. 2023-10-13T15:50:02,768 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,768 directory, all directories are treated like packages. 2023-10-13T15:50:02,768 ******************************************************************************** 2023-10-13T15:50:02,769 !! 2023-10-13T15:50:02,770 check.warn(importable) 2023-10-13T15:50:02,771 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.export_emodel.templates' is absent from the `packages` configuration. 2023-10-13T15:50:02,771 !! 2023-10-13T15:50:02,772 ******************************************************************************** 2023-10-13T15:50:02,773 ############################ 2023-10-13T15:50:02,774 # Package would be ignored # 2023-10-13T15:50:02,774 ############################ 2023-10-13T15:50:02,774 Python recognizes 'bluepyemodel.export_emodel.templates' as an importable package[^1], 2023-10-13T15:50:02,775 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,776 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,777 package, please make sure that 'bluepyemodel.export_emodel.templates' is explicitly added 2023-10-13T15:50:02,777 to the `packages` configuration field. 2023-10-13T15:50:02,778 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,779 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,779 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,780 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,782 If you don't want 'bluepyemodel.export_emodel.templates' to be distributed and are 2023-10-13T15:50:02,783 already explicitly excluding 'bluepyemodel.export_emodel.templates' via 2023-10-13T15:50:02,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,784 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,785 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,788 even if it does not contain any `.py` files. 2023-10-13T15:50:02,788 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,790 directory, all directories are treated like packages. 2023-10-13T15:50:02,791 ******************************************************************************** 2023-10-13T15:50:02,792 !! 2023-10-13T15:50:02,792 check.warn(importable) 2023-10-13T15:50:02,793 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data' is absent from the `packages` configuration. 2023-10-13T15:50:02,793 !! 2023-10-13T15:50:02,794 ******************************************************************************** 2023-10-13T15:50:02,795 ############################ 2023-10-13T15:50:02,796 # Package would be ignored # 2023-10-13T15:50:02,797 ############################ 2023-10-13T15:50:02,797 Python recognizes 'tests.test_data' as an importable package[^1], 2023-10-13T15:50:02,798 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,799 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,799 package, please make sure that 'tests.test_data' is explicitly added 2023-10-13T15:50:02,800 to the `packages` configuration field. 2023-10-13T15:50:02,801 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,802 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,803 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,805 If you don't want 'tests.test_data' to be distributed and are 2023-10-13T15:50:02,806 already explicitly excluding 'tests.test_data' via 2023-10-13T15:50:02,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,807 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,807 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,809 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,810 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,812 even if it does not contain any `.py` files. 2023-10-13T15:50:02,812 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,813 directory, all directories are treated like packages. 2023-10-13T15:50:02,813 ******************************************************************************** 2023-10-13T15:50:02,814 !! 2023-10-13T15:50:02,815 check.warn(importable) 2023-10-13T15:50:02,815 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.config' is absent from the `packages` configuration. 2023-10-13T15:50:02,816 !! 2023-10-13T15:50:02,817 ******************************************************************************** 2023-10-13T15:50:02,818 ############################ 2023-10-13T15:50:02,818 # Package would be ignored # 2023-10-13T15:50:02,819 ############################ 2023-10-13T15:50:02,819 Python recognizes 'tests.test_data.config' as an importable package[^1], 2023-10-13T15:50:02,820 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,821 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,821 package, please make sure that 'tests.test_data.config' is explicitly added 2023-10-13T15:50:02,822 to the `packages` configuration field. 2023-10-13T15:50:02,823 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,823 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,824 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,824 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,825 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,826 If you don't want 'tests.test_data.config' to be distributed and are 2023-10-13T15:50:02,827 already explicitly excluding 'tests.test_data.config' via 2023-10-13T15:50:02,827 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,827 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,828 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,829 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,830 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,831 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,832 even if it does not contain any `.py` files. 2023-10-13T15:50:02,832 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,833 directory, all directories are treated like packages. 2023-10-13T15:50:02,833 ******************************************************************************** 2023-10-13T15:50:02,834 !! 2023-10-13T15:50:02,835 check.warn(importable) 2023-10-13T15:50:02,835 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.ephys_data' is absent from the `packages` configuration. 2023-10-13T15:50:02,836 !! 2023-10-13T15:50:02,837 ******************************************************************************** 2023-10-13T15:50:02,838 ############################ 2023-10-13T15:50:02,838 # Package would be ignored # 2023-10-13T15:50:02,839 ############################ 2023-10-13T15:50:02,839 Python recognizes 'tests.test_data.ephys_data' as an importable package[^1], 2023-10-13T15:50:02,840 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,841 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,842 package, please make sure that 'tests.test_data.ephys_data' is explicitly added 2023-10-13T15:50:02,842 to the `packages` configuration field. 2023-10-13T15:50:02,843 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,844 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,845 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,847 If you don't want 'tests.test_data.ephys_data' to be distributed and are 2023-10-13T15:50:02,848 already explicitly excluding 'tests.test_data.ephys_data' via 2023-10-13T15:50:02,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,849 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,849 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,850 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,852 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,853 even if it does not contain any `.py` files. 2023-10-13T15:50:02,853 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,854 directory, all directories are treated like packages. 2023-10-13T15:50:02,854 ******************************************************************************** 2023-10-13T15:50:02,855 !! 2023-10-13T15:50:02,855 check.warn(importable) 2023-10-13T15:50:02,856 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.mechanisms' is absent from the `packages` configuration. 2023-10-13T15:50:02,856 !! 2023-10-13T15:50:02,857 ******************************************************************************** 2023-10-13T15:50:02,858 ############################ 2023-10-13T15:50:02,858 # Package would be ignored # 2023-10-13T15:50:02,859 ############################ 2023-10-13T15:50:02,859 Python recognizes 'tests.test_data.mechanisms' as an importable package[^1], 2023-10-13T15:50:02,859 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,861 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,861 package, please make sure that 'tests.test_data.mechanisms' is explicitly added 2023-10-13T15:50:02,862 to the `packages` configuration field. 2023-10-13T15:50:02,863 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,864 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,865 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,866 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,868 If you don't want 'tests.test_data.mechanisms' to be distributed and are 2023-10-13T15:50:02,869 already explicitly excluding 'tests.test_data.mechanisms' via 2023-10-13T15:50:02,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,870 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,871 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,872 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,873 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,875 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,875 even if it does not contain any `.py` files. 2023-10-13T15:50:02,876 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,877 directory, all directories are treated like packages. 2023-10-13T15:50:02,877 ******************************************************************************** 2023-10-13T15:50:02,878 !! 2023-10-13T15:50:02,879 check.warn(importable) 2023-10-13T15:50:02,880 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.morphology' is absent from the `packages` configuration. 2023-10-13T15:50:02,880 !! 2023-10-13T15:50:02,920 ******************************************************************************** 2023-10-13T15:50:02,928 ############################ 2023-10-13T15:50:02,929 # Package would be ignored # 2023-10-13T15:50:02,931 ############################ 2023-10-13T15:50:02,932 Python recognizes 'tests.test_data.morphology' as an importable package[^1], 2023-10-13T15:50:02,932 but it is absent from setuptools' `packages` configuration. 2023-10-13T15:50:02,934 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-13T15:50:02,934 package, please make sure that 'tests.test_data.morphology' is explicitly added 2023-10-13T15:50:02,935 to the `packages` configuration field. 2023-10-13T15:50:02,935 Alternatively, you can also rely on setuptools' discovery methods 2023-10-13T15:50:02,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-13T15:50:02,937 instead of `find_packages(...)`/`find:`). 2023-10-13T15:50:02,938 You can read more about "package discovery" on setuptools documentation page: 2023-10-13T15:50:02,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-13T15:50:02,940 If you don't want 'tests.test_data.morphology' to be distributed and are 2023-10-13T15:50:02,940 already explicitly excluding 'tests.test_data.morphology' via 2023-10-13T15:50:02,941 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-13T15:50:02,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-13T15:50:02,942 combination with a more fine grained `package-data` configuration. 2023-10-13T15:50:02,943 You can read more about "package data files" on setuptools documentation page: 2023-10-13T15:50:02,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-13T15:50:02,945 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-13T15:50:02,946 even if it does not contain any `.py` files. 2023-10-13T15:50:02,946 On the other hand, currently there is no concept of package data 2023-10-13T15:50:02,947 directory, all directories are treated like packages. 2023-10-13T15:50:02,947 ******************************************************************************** 2023-10-13T15:50:02,948 !! 2023-10-13T15:50:02,949 check.warn(importable) 2023-10-13T15:50:02,949 creating build/lib/tests/test_data 2023-10-13T15:50:02,950 copying tests/test_data/final.json -> build/lib/tests/test_data 2023-10-13T15:50:02,951 copying tests/test_data/final_tmp.json -> build/lib/tests/test_data 2023-10-13T15:50:02,951 copying tests/test_data/test_APWaveform_320.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,952 copying tests/test_data/test_IV_-100.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,952 copying tests/test_data/test_RMPProtocol.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,953 copying tests/test_data/test_RinProtocol.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,953 copying tests/test_data/test_SpikeRec_600.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,954 copying tests/test_data/test_Step_200.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,954 copying tests/test_data/test_Step_280.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,955 copying tests/test_data/test_bAP.ca_ais.cai.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,955 copying tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,956 copying tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,956 copying tests/test_data/test_bAP.ca_soma.cai.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,957 copying tests/test_data/test_bAP.dend1.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,958 copying tests/test_data/test_bAP.dend2.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,958 copying tests/test_data/test_bAP.soma.v.csv -> build/lib/tests/test_data 2023-10-13T15:50:02,958 copying tests/test_data/test_features.json -> build/lib/tests/test_data 2023-10-13T15:50:02,959 copying tests/test_data/test_mechanisms.json -> build/lib/tests/test_data 2023-10-13T15:50:02,959 copying tests/test_data/test_parameters.json -> build/lib/tests/test_data 2023-10-13T15:50:02,960 copying tests/test_data/test_protocols.json -> build/lib/tests/test_data 2023-10-13T15:50:02,960 copying tests/test_data/test_recipes.json -> build/lib/tests/test_data 2023-10-13T15:50:02,961 creating build/lib/tests/test_data/config 2023-10-13T15:50:02,965 copying tests/test_data/config/config_dict.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,967 copying tests/test_data/config/features.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,968 copying tests/test_data/config/params.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,968 copying tests/test_data/config/params_restart.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,969 copying tests/test_data/config/protocols.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,969 copying tests/test_data/config/recipes.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,970 copying tests/test_data/config/recipes_restart.json -> build/lib/tests/test_data/config 2023-10-13T15:50:02,970 creating build/lib/tests/test_data/ephys_data 2023-10-13T15:50:02,971 copying tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/lib/tests/test_data/ephys_data 2023-10-13T15:50:02,972 creating build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,972 copying tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,973 copying tests/test_data/mechanisms/Ca_HVA2.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,973 copying tests/test_data/mechanisms/Ca_LVAst.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,974 copying tests/test_data/mechanisms/Ih.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,974 copying tests/test_data/mechanisms/K_Pst.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,975 copying tests/test_data/mechanisms/K_Tst.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,976 copying tests/test_data/mechanisms/NaTg.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,976 copying tests/test_data/mechanisms/Nap_Et2.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,977 copying tests/test_data/mechanisms/SK_E2.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,978 copying tests/test_data/mechanisms/SKv3_1.mod -> build/lib/tests/test_data/mechanisms 2023-10-13T15:50:02,979 creating build/lib/tests/test_data/morphology 2023-10-13T15:50:02,980 copying tests/test_data/morphology/C060114A5.asc -> build/lib/tests/test_data/morphology 2023-10-13T15:50:02,981 creating build/lib/bluepyemodel/export_emodel/templates 2023-10-13T15:50:02,991 copying bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-13T15:50:02,992 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-13T15:50:02,993 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-13T15:50:02,993 creating build/lib/bluepyemodel/ecode/data 2023-10-13T15:50:02,994 copying bluepyemodel/ecode/data/NoiseOU3.txt -> build/lib/bluepyemodel/ecode/data 2023-10-13T15:50:03,427 copying bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-10-13T15:50:03,465 copying bluepyemodel/ecode/data/WhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-10-13T15:50:03,948 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-13T15:50:03,949 !! 2023-10-13T15:50:03,950 ******************************************************************************** 2023-10-13T15:50:03,950 Please avoid running ``setup.py`` directly. 2023-10-13T15:50:03,951 Instead, use pypa/build, pypa/installer or other 2023-10-13T15:50:03,951 standards-based tools. 2023-10-13T15:50:03,953 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-13T15:50:03,953 ******************************************************************************** 2023-10-13T15:50:03,954 !! 2023-10-13T15:50:03,954 self.initialize_options() 2023-10-13T15:50:03,975 installing to build/bdist.linux-armv7l/wheel 2023-10-13T15:50:03,975 running install 2023-10-13T15:50:03,999 running install_lib 2023-10-13T15:50:04,026 creating build/bdist.linux-armv7l 2023-10-13T15:50:04,026 creating build/bdist.linux-armv7l/wheel 2023-10-13T15:50:04,028 creating build/bdist.linux-armv7l/wheel/tests 2023-10-13T15:50:04,029 creating build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-13T15:50:04,030 copying build/lib/tests/functional_tests/test_validation.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-13T15:50:04,032 copying build/lib/tests/functional_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-13T15:50:04,034 copying build/lib/tests/functional_tests/test_protocols.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-13T15:50:04,036 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-10-13T15:50:04,038 creating build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,038 copying build/lib/tests/unit_tests/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,040 copying build/lib/tests/unit_tests/test_ecodes.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,043 copying build/lib/tests/unit_tests/test_emodelmetadata.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,045 copying build/lib/tests/unit_tests/test_local_access_point.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,046 copying build/lib/tests/unit_tests/test_optimisation.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,048 copying build/lib/tests/unit_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,050 copying build/lib/tests/unit_tests/test_targets_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,052 copying build/lib/tests/unit_tests/test_fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,054 copying build/lib/tests/unit_tests/test_evaluator.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,056 copying build/lib/tests/unit_tests/test_model_parameters_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,058 copying build/lib/tests/unit_tests/test_validation_functions.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,060 copying build/lib/tests/unit_tests/test_model.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,062 copying build/lib/tests/unit_tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,064 copying build/lib/tests/unit_tests/test_emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-13T15:50:04,066 creating build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-13T15:50:04,067 copying build/lib/tests/test_models/dummycells.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-13T15:50:04,070 copying build/lib/tests/test_models/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-13T15:50:04,073 creating build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,073 copying build/lib/tests/test_data/test_protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,075 copying build/lib/tests/test_data/test_bAP.dend2.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,078 copying build/lib/tests/test_data/test_bAP.ca_ais.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,080 copying build/lib/tests/test_data/test_Step_200.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,086 copying build/lib/tests/test_data/test_bAP.dend1.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,088 copying build/lib/tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,090 copying build/lib/tests/test_data/test_mechanisms.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,092 creating build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-10-13T15:50:04,093 copying build/lib/tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-10-13T15:50:04,186 copying build/lib/tests/test_data/test_IV_-100.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,188 copying build/lib/tests/test_data/test_bAP.ca_soma.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,190 copying build/lib/tests/test_data/test_RMPProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,192 copying build/lib/tests/test_data/final.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,195 copying build/lib/tests/test_data/test_recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,197 creating build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,198 copying build/lib/tests/test_data/config/recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,199 copying build/lib/tests/test_data/config/recipes_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,201 copying build/lib/tests/test_data/config/features.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,203 copying build/lib/tests/test_data/config/params.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,206 copying build/lib/tests/test_data/config/protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,207 copying build/lib/tests/test_data/config/config_dict.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,209 copying build/lib/tests/test_data/config/params_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-13T15:50:04,211 copying build/lib/tests/test_data/test_SpikeRec_600.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,214 creating build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-10-13T15:50:04,215 copying build/lib/tests/test_data/morphology/C060114A5.asc -> build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-10-13T15:50:04,226 copying build/lib/tests/test_data/test_features.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,229 copying build/lib/tests/test_data/test_Step_280.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,235 copying build/lib/tests/test_data/test_RinProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,237 copying build/lib/tests/test_data/test_parameters.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,239 copying build/lib/tests/test_data/final_tmp.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,242 copying build/lib/tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,245 creating build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,246 copying build/lib/tests/test_data/mechanisms/Ca_LVAst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,248 copying build/lib/tests/test_data/mechanisms/Nap_Et2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,249 copying build/lib/tests/test_data/mechanisms/NaTg.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,251 copying build/lib/tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,253 copying build/lib/tests/test_data/mechanisms/SKv3_1.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,254 copying build/lib/tests/test_data/mechanisms/Ca_HVA2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,256 copying build/lib/tests/test_data/mechanisms/K_Pst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,258 copying build/lib/tests/test_data/mechanisms/SK_E2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,259 copying build/lib/tests/test_data/mechanisms/Ih.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,261 copying build/lib/tests/test_data/mechanisms/K_Tst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-13T15:50:04,263 copying build/lib/tests/test_data/test_APWaveform_320.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,265 copying build/lib/tests/test_data/test_bAP.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-13T15:50:04,268 creating build/bdist.linux-armv7l/wheel/bluepyemodel 2023-10-13T15:50:04,269 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-13T15:50:04,270 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-13T15:50:04,271 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-13T15:50:04,274 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-13T15:50:04,276 copying build/lib/bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-13T15:50:04,278 copying build/lib/bluepyemodel/export_emodel/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-13T15:50:04,280 copying build/lib/bluepyemodel/export_emodel/export_emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-13T15:50:04,283 copying build/lib/bluepyemodel/export_emodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-13T15:50:04,285 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-13T15:50:04,286 copying build/lib/bluepyemodel/tasks/config.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-13T15:50:04,288 copying build/lib/bluepyemodel/tasks/luigi_custom.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-13T15:50:04,290 copying build/lib/bluepyemodel/tasks/luigi_tools.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-13T15:50:04,292 copying build/lib/bluepyemodel/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-13T15:50:04,294 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-13T15:50:04,295 copying build/lib/bluepyemodel/tasks/emodel_creation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-13T15:50:04,297 copying build/lib/bluepyemodel/tasks/emodel_creation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-13T15:50:04,300 creating build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-13T15:50:04,301 copying build/lib/bluepyemodel/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-13T15:50:04,303 copying build/lib/bluepyemodel/optimisation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-13T15:50:04,305 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,306 copying build/lib/bluepyemodel/tools/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,308 copying build/lib/bluepyemodel/tools/mechanisms.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,310 copying build/lib/bluepyemodel/tools/morphology.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,312 copying build/lib/bluepyemodel/tools/search_pdfs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,314 copying build/lib/bluepyemodel/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,316 copying build/lib/bluepyemodel/tools/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-13T15:50:04,318 creating build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-13T15:50:04,319 copying build/lib/bluepyemodel/access_point/access_point.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-13T15:50:04,321 copying build/lib/bluepyemodel/access_point/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-13T15:50:04,323 copying build/lib/bluepyemodel/access_point/local.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-13T15:50:04,326 creating build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-13T15:50:04,327 copying build/lib/bluepyemodel/validation/validation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-13T15:50:04,329 copying build/lib/bluepyemodel/validation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-13T15:50:04,331 copying build/lib/bluepyemodel/validation/validation_functions.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-13T15:50:04,334 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,335 copying build/lib/bluepyemodel/ecode/sahp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,337 copying build/lib/bluepyemodel/ecode/dendrite.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,339 copying build/lib/bluepyemodel/ecode/iv.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,341 copying build/lib/bluepyemodel/ecode/firepattern.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,343 copying build/lib/bluepyemodel/ecode/noiseou3.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,345 copying build/lib/bluepyemodel/ecode/random_square_inputs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,347 copying build/lib/bluepyemodel/ecode/dehyperpol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,350 copying build/lib/bluepyemodel/ecode/apwaveform.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,351 copying build/lib/bluepyemodel/ecode/idrest.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,353 copying build/lib/bluepyemodel/ecode/poscheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,356 copying build/lib/bluepyemodel/ecode/probampanmda_ems.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,357 copying build/lib/bluepyemodel/ecode/spikerec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,360 copying build/lib/bluepyemodel/ecode/subwhitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:04,362 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-13T15:50:04,363 copying build/lib/bluepyemodel/ecode/data/NoiseOU3.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-13T15:50:04,808 copying build/lib/bluepyemodel/ecode/data/WhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-13T15:50:05,257 copying build/lib/bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-13T15:50:05,307 copying build/lib/bluepyemodel/ecode/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,309 copying build/lib/bluepyemodel/ecode/sinespec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,311 copying build/lib/bluepyemodel/ecode/comb.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,313 copying build/lib/bluepyemodel/ecode/stimulus.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,315 copying build/lib/bluepyemodel/ecode/hyperdepol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,317 copying build/lib/bluepyemodel/ecode/negcheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,319 copying build/lib/bluepyemodel/ecode/customfromfile.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,321 copying build/lib/bluepyemodel/ecode/noise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,322 copying build/lib/bluepyemodel/ecode/ramp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,325 copying build/lib/bluepyemodel/ecode/whitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-13T15:50:05,327 creating build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,328 copying build/lib/bluepyemodel/emodel_pipeline/emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,330 copying build/lib/bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,332 copying build/lib/bluepyemodel/emodel_pipeline/emodel_settings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,334 copying build/lib/bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,336 copying build/lib/bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,338 copying build/lib/bluepyemodel/emodel_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,340 copying build/lib/bluepyemodel/emodel_pipeline/emodel_script.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,342 copying build/lib/bluepyemodel/emodel_pipeline/plotting.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-13T15:50:05,345 creating build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,346 copying build/lib/bluepyemodel/model/neuron_model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,349 copying build/lib/bluepyemodel/model/model_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,351 copying build/lib/bluepyemodel/model/model.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,353 copying build/lib/bluepyemodel/model/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,355 copying build/lib/bluepyemodel/model/distribution_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,357 copying build/lib/bluepyemodel/model/model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,359 copying build/lib/bluepyemodel/model/parameter_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,361 copying build/lib/bluepyemodel/model/morphology_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,363 copying build/lib/bluepyemodel/model/mechanism_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,364 copying build/lib/bluepyemodel/model/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-13T15:50:05,366 copying build/lib/bluepyemodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel 2023-10-13T15:50:05,368 creating build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,369 copying build/lib/bluepyemodel/efeatures_extraction/target.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,371 copying build/lib/bluepyemodel/efeatures_extraction/auto_targets.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,373 copying build/lib/bluepyemodel/efeatures_extraction/targets_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,375 copying build/lib/bluepyemodel/efeatures_extraction/targets_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,377 copying build/lib/bluepyemodel/efeatures_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,378 copying build/lib/bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,381 copying build/lib/bluepyemodel/efeatures_extraction/trace_file.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-13T15:50:05,383 creating build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,384 copying build/lib/bluepyemodel/evaluation/evaluation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,386 copying build/lib/bluepyemodel/evaluation/efel_feature_bpem.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,388 copying build/lib/bluepyemodel/evaluation/protocols.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,391 copying build/lib/bluepyemodel/evaluation/protocol_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,394 copying build/lib/bluepyemodel/evaluation/recordings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,396 copying build/lib/bluepyemodel/evaluation/efeature_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,398 copying build/lib/bluepyemodel/evaluation/modifiers.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,401 copying build/lib/bluepyemodel/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,402 copying build/lib/bluepyemodel/evaluation/evaluator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,405 copying build/lib/bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-13T15:50:05,408 running install_egg_info 2023-10-13T15:50:05,436 Copying bluepyemodel.egg-info to build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.45-py3.11.egg-info 2023-10-13T15:50:05,446 running install_scripts 2023-10-13T15:50:05,470 creating build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.45.dist-info/WHEEL 2023-10-13T15:50:05,472 creating '/tmp/pip-wheel-5ov8h56j/bluepyemodel-0.0.45-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-13T15:50:05,475 adding 'bluepyemodel/__init__.py' 2023-10-13T15:50:05,477 adding 'bluepyemodel/access_point/__init__.py' 2023-10-13T15:50:05,479 adding 'bluepyemodel/access_point/access_point.py' 2023-10-13T15:50:05,483 adding 'bluepyemodel/access_point/local.py' 2023-10-13T15:50:05,485 adding 'bluepyemodel/ecode/__init__.py' 2023-10-13T15:50:05,487 adding 'bluepyemodel/ecode/apwaveform.py' 2023-10-13T15:50:05,488 adding 'bluepyemodel/ecode/comb.py' 2023-10-13T15:50:05,490 adding 'bluepyemodel/ecode/customfromfile.py' 2023-10-13T15:50:05,491 adding 'bluepyemodel/ecode/dehyperpol.py' 2023-10-13T15:50:05,493 adding 'bluepyemodel/ecode/dendrite.py' 2023-10-13T15:50:05,494 adding 'bluepyemodel/ecode/firepattern.py' 2023-10-13T15:50:05,495 adding 'bluepyemodel/ecode/hyperdepol.py' 2023-10-13T15:50:05,497 adding 'bluepyemodel/ecode/idrest.py' 2023-10-13T15:50:05,498 adding 'bluepyemodel/ecode/iv.py' 2023-10-13T15:50:05,500 adding 'bluepyemodel/ecode/negcheops.py' 2023-10-13T15:50:05,501 adding 'bluepyemodel/ecode/noise.py' 2023-10-13T15:50:05,502 adding 'bluepyemodel/ecode/noiseou3.py' 2023-10-13T15:50:05,504 adding 'bluepyemodel/ecode/poscheops.py' 2023-10-13T15:50:05,505 adding 'bluepyemodel/ecode/probampanmda_ems.py' 2023-10-13T15:50:05,506 adding 'bluepyemodel/ecode/ramp.py' 2023-10-13T15:50:05,508 adding 'bluepyemodel/ecode/random_square_inputs.py' 2023-10-13T15:50:05,509 adding 'bluepyemodel/ecode/sahp.py' 2023-10-13T15:50:05,511 adding 'bluepyemodel/ecode/sinespec.py' 2023-10-13T15:50:05,513 adding 'bluepyemodel/ecode/spikerec.py' 2023-10-13T15:50:05,514 adding 'bluepyemodel/ecode/stimulus.py' 2023-10-13T15:50:05,515 adding 'bluepyemodel/ecode/subwhitenoise.py' 2023-10-13T15:50:05,516 adding 'bluepyemodel/ecode/whitenoise.py' 2023-10-13T15:50:07,925 adding 'bluepyemodel/ecode/data/NoiseOU3.txt' 2023-10-13T15:50:08,376 adding 'bluepyemodel/ecode/data/SubWhiteNoise.txt' 2023-10-13T15:50:10,787 adding 'bluepyemodel/ecode/data/WhiteNoise.txt' 2023-10-13T15:50:11,031 adding 'bluepyemodel/efeatures_extraction/__init__.py' 2023-10-13T15:50:11,032 adding 'bluepyemodel/efeatures_extraction/auto_targets.py' 2023-10-13T15:50:11,034 adding 'bluepyemodel/efeatures_extraction/efeatures_extraction.py' 2023-10-13T15:50:11,035 adding 'bluepyemodel/efeatures_extraction/target.py' 2023-10-13T15:50:11,037 adding 'bluepyemodel/efeatures_extraction/targets_configuration.py' 2023-10-13T15:50:11,039 adding 'bluepyemodel/efeatures_extraction/targets_configurator.py' 2023-10-13T15:50:11,040 adding 'bluepyemodel/efeatures_extraction/trace_file.py' 2023-10-13T15:50:11,042 adding 'bluepyemodel/emodel_pipeline/__init__.py' 2023-10-13T15:50:11,044 adding 'bluepyemodel/emodel_pipeline/emodel.py' 2023-10-13T15:50:11,045 adding 'bluepyemodel/emodel_pipeline/emodel_metadata.py' 2023-10-13T15:50:11,047 adding 'bluepyemodel/emodel_pipeline/emodel_pipeline.py' 2023-10-13T15:50:11,049 adding 'bluepyemodel/emodel_pipeline/emodel_script.py' 2023-10-13T15:50:11,051 adding 'bluepyemodel/emodel_pipeline/emodel_settings.py' 2023-10-13T15:50:11,053 adding 'bluepyemodel/emodel_pipeline/emodel_workflow.py' 2023-10-13T15:50:11,057 adding 'bluepyemodel/emodel_pipeline/plotting.py' 2023-10-13T15:50:11,059 adding 'bluepyemodel/evaluation/__init__.py' 2023-10-13T15:50:11,060 adding 'bluepyemodel/evaluation/efeature_configuration.py' 2023-10-13T15:50:11,062 adding 'bluepyemodel/evaluation/efel_feature_bpem.py' 2023-10-13T15:50:11,064 adding 'bluepyemodel/evaluation/evaluation.py' 2023-10-13T15:50:11,067 adding 'bluepyemodel/evaluation/evaluator.py' 2023-10-13T15:50:11,070 adding 'bluepyemodel/evaluation/fitness_calculator_configuration.py' 2023-10-13T15:50:11,072 adding 'bluepyemodel/evaluation/modifiers.py' 2023-10-13T15:50:11,074 adding 'bluepyemodel/evaluation/protocol_configuration.py' 2023-10-13T15:50:11,077 adding 'bluepyemodel/evaluation/protocols.py' 2023-10-13T15:50:11,079 adding 'bluepyemodel/evaluation/recordings.py' 2023-10-13T15:50:11,081 adding 'bluepyemodel/export_emodel/__init__.py' 2023-10-13T15:50:11,082 adding 'bluepyemodel/export_emodel/export_emodel.py' 2023-10-13T15:50:11,084 adding 'bluepyemodel/export_emodel/utils.py' 2023-10-13T15:50:11,086 adding 'bluepyemodel/export_emodel/templates/cell_template.jinja2' 2023-10-13T15:50:11,087 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2' 2023-10-13T15:50:11,089 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2' 2023-10-13T15:50:11,091 adding 'bluepyemodel/model/__init__.py' 2023-10-13T15:50:11,092 adding 'bluepyemodel/model/distribution_configuration.py' 2023-10-13T15:50:11,093 adding 'bluepyemodel/model/mechanism_configuration.py' 2023-10-13T15:50:11,095 adding 'bluepyemodel/model/model.py' 2023-10-13T15:50:11,096 adding 'bluepyemodel/model/model_configuration.py' 2023-10-13T15:50:11,098 adding 'bluepyemodel/model/model_configurator.py' 2023-10-13T15:50:11,099 adding 'bluepyemodel/model/morphology_configuration.py' 2023-10-13T15:50:11,102 adding 'bluepyemodel/model/neuron_model_configuration.py' 2023-10-13T15:50:11,104 adding 'bluepyemodel/model/parameter_configuration.py' 2023-10-13T15:50:11,105 adding 'bluepyemodel/model/utils.py' 2023-10-13T15:50:11,106 adding 'bluepyemodel/optimisation/__init__.py' 2023-10-13T15:50:11,108 adding 'bluepyemodel/optimisation/optimisation.py' 2023-10-13T15:50:11,110 adding 'bluepyemodel/tasks/__init__.py' 2023-10-13T15:50:11,111 adding 'bluepyemodel/tasks/config.py' 2023-10-13T15:50:11,112 adding 'bluepyemodel/tasks/luigi_custom.py' 2023-10-13T15:50:11,114 adding 'bluepyemodel/tasks/luigi_tools.py' 2023-10-13T15:50:11,116 adding 'bluepyemodel/tasks/emodel_creation/__init__.py' 2023-10-13T15:50:11,119 adding 'bluepyemodel/tasks/emodel_creation/optimisation.py' 2023-10-13T15:50:11,121 adding 'bluepyemodel/tools/__init__.py' 2023-10-13T15:50:11,122 adding 'bluepyemodel/tools/mechanisms.py' 2023-10-13T15:50:11,124 adding 'bluepyemodel/tools/morphology.py' 2023-10-13T15:50:11,125 adding 'bluepyemodel/tools/multiprocessing.py' 2023-10-13T15:50:11,126 adding 'bluepyemodel/tools/search_pdfs.py' 2023-10-13T15:50:11,128 adding 'bluepyemodel/tools/utils.py' 2023-10-13T15:50:11,130 adding 'bluepyemodel/validation/__init__.py' 2023-10-13T15:50:11,131 adding 'bluepyemodel/validation/validation.py' 2023-10-13T15:50:11,133 adding 'bluepyemodel/validation/validation_functions.py' 2023-10-13T15:50:11,135 adding 'tests/__init__.py' 2023-10-13T15:50:11,137 adding 'tests/functional_tests/__init__.py' 2023-10-13T15:50:11,138 adding 'tests/functional_tests/test_protocols.py' 2023-10-13T15:50:11,139 adding 'tests/functional_tests/test_validation.py' 2023-10-13T15:50:11,143 adding 'tests/test_data/final.json' 2023-10-13T15:50:11,146 adding 'tests/test_data/final_tmp.json' 2023-10-13T15:50:11,151 adding 'tests/test_data/test_APWaveform_320.soma.v.csv' 2023-10-13T15:50:11,153 adding 'tests/test_data/test_IV_-100.soma.v.csv' 2023-10-13T15:50:11,155 adding 'tests/test_data/test_RMPProtocol.soma.v.csv' 2023-10-13T15:50:11,156 adding 'tests/test_data/test_RinProtocol.soma.v.csv' 2023-10-13T15:50:11,159 adding 'tests/test_data/test_SpikeRec_600.soma.v.csv' 2023-10-13T15:50:11,225 adding 'tests/test_data/test_Step_200.soma.v.csv' 2023-10-13T15:50:11,298 adding 'tests/test_data/test_Step_280.soma.v.csv' 2023-10-13T15:50:11,304 adding 'tests/test_data/test_bAP.ca_ais.cai.csv' 2023-10-13T15:50:11,307 adding 'tests/test_data/test_bAP.ca_prox_apic.cai.csv' 2023-10-13T15:50:11,311 adding 'tests/test_data/test_bAP.ca_prox_basal.cai.csv' 2023-10-13T15:50:11,314 adding 'tests/test_data/test_bAP.ca_soma.cai.csv' 2023-10-13T15:50:11,318 adding 'tests/test_data/test_bAP.dend1.v.csv' 2023-10-13T15:50:11,322 adding 'tests/test_data/test_bAP.dend2.v.csv' 2023-10-13T15:50:11,325 adding 'tests/test_data/test_bAP.soma.v.csv' 2023-10-13T15:50:11,327 adding 'tests/test_data/test_features.json' 2023-10-13T15:50:11,329 adding 'tests/test_data/test_mechanisms.json' 2023-10-13T15:50:11,330 adding 'tests/test_data/test_parameters.json' 2023-10-13T15:50:11,331 adding 'tests/test_data/test_protocols.json' 2023-10-13T15:50:11,332 adding 'tests/test_data/test_recipes.json' 2023-10-13T15:50:11,334 adding 'tests/test_data/config/config_dict.json' 2023-10-13T15:50:11,336 adding 'tests/test_data/config/features.json' 2023-10-13T15:50:11,337 adding 'tests/test_data/config/params.json' 2023-10-13T15:50:11,339 adding 'tests/test_data/config/params_restart.json' 2023-10-13T15:50:11,340 adding 'tests/test_data/config/protocols.json' 2023-10-13T15:50:11,341 adding 'tests/test_data/config/recipes.json' 2023-10-13T15:50:11,342 adding 'tests/test_data/config/recipes_restart.json' 2023-10-13T15:50:11,736 adding 'tests/test_data/ephys_data/C010600C1-MT-C1.nwb' 2023-10-13T15:50:11,780 adding 'tests/test_data/mechanisms/CaDynamics_DC0.mod' 2023-10-13T15:50:11,781 adding 'tests/test_data/mechanisms/Ca_HVA2.mod' 2023-10-13T15:50:11,782 adding 'tests/test_data/mechanisms/Ca_LVAst.mod' 2023-10-13T15:50:11,783 adding 'tests/test_data/mechanisms/Ih.mod' 2023-10-13T15:50:11,784 adding 'tests/test_data/mechanisms/K_Pst.mod' 2023-10-13T15:50:11,786 adding 'tests/test_data/mechanisms/K_Tst.mod' 2023-10-13T15:50:11,787 adding 'tests/test_data/mechanisms/NaTg.mod' 2023-10-13T15:50:11,788 adding 'tests/test_data/mechanisms/Nap_Et2.mod' 2023-10-13T15:50:11,789 adding 'tests/test_data/mechanisms/SK_E2.mod' 2023-10-13T15:50:11,791 adding 'tests/test_data/mechanisms/SKv3_1.mod' 2023-10-13T15:50:11,865 adding 'tests/test_data/morphology/C060114A5.asc' 2023-10-13T15:50:11,871 adding 'tests/test_models/__init__.py' 2023-10-13T15:50:11,872 adding 'tests/test_models/dummycells.py' 2023-10-13T15:50:11,874 adding 'tests/unit_tests/__init__.py' 2023-10-13T15:50:11,877 adding 'tests/unit_tests/test_ecodes.py' 2023-10-13T15:50:11,878 adding 'tests/unit_tests/test_emodel_pipeline.py' 2023-10-13T15:50:11,880 adding 'tests/unit_tests/test_emodelmetadata.py' 2023-10-13T15:50:11,881 adding 'tests/unit_tests/test_evaluator.py' 2023-10-13T15:50:11,883 adding 'tests/unit_tests/test_fitness_calculator_configuration.py' 2023-10-13T15:50:11,884 adding 'tests/unit_tests/test_local_access_point.py' 2023-10-13T15:50:11,885 adding 'tests/unit_tests/test_model.py' 2023-10-13T15:50:11,887 adding 'tests/unit_tests/test_model_parameters_configuration.py' 2023-10-13T15:50:11,888 adding 'tests/unit_tests/test_optimisation.py' 2023-10-13T15:50:11,889 adding 'tests/unit_tests/test_plotting.py' 2023-10-13T15:50:11,891 adding 'tests/unit_tests/test_targets_configuration.py' 2023-10-13T15:50:11,892 adding 'tests/unit_tests/test_tools.py' 2023-10-13T15:50:11,893 adding 'tests/unit_tests/test_validation_functions.py' 2023-10-13T15:50:11,894 adding 'bluepyemodel-0.0.45.dist-info/AUTHORS.txt' 2023-10-13T15:50:11,896 adding 'bluepyemodel-0.0.45.dist-info/COPYING' 2023-10-13T15:50:11,897 adding 'bluepyemodel-0.0.45.dist-info/LICENSE.txt' 2023-10-13T15:50:11,899 adding 'bluepyemodel-0.0.45.dist-info/METADATA' 2023-10-13T15:50:11,900 adding 'bluepyemodel-0.0.45.dist-info/WHEEL' 2023-10-13T15:50:11,901 adding 'bluepyemodel-0.0.45.dist-info/top_level.txt' 2023-10-13T15:50:11,904 adding 'bluepyemodel-0.0.45.dist-info/RECORD' 2023-10-13T15:50:12,033 removing build/bdist.linux-armv7l/wheel 2023-10-13T15:50:12,221 Building wheel for bluepyemodel (setup.py): finished with status 'done' 2023-10-13T15:50:12,370 Created wheel for bluepyemodel: filename=bluepyemodel-0.0.45-py3-none-any.whl size=12438628 sha256=1e1b566743604584eb8cc8b5b368111b279bbaf75ea09b9d12b33105a3251e67 2023-10-13T15:50:12,371 Stored in directory: /tmp/pip-ephem-wheel-cache-n3mi02pl/wheels/50/64/fb/898a7587c5a3765b94075943244b980d515bad3c264a46884f 2023-10-13T15:50:12,392 Successfully built bluepyemodel 2023-10-13T15:50:12,680 Removed build tracker: '/tmp/pip-build-tracker-35pv7sgu'