2023-10-16T09:05:54,375 Created temporary directory: /tmp/pip-build-tracker-t48_pu74 2023-10-16T09:05:54,376 Initialized build tracking at /tmp/pip-build-tracker-t48_pu74 2023-10-16T09:05:54,377 Created build tracker: /tmp/pip-build-tracker-t48_pu74 2023-10-16T09:05:54,377 Entered build tracker: /tmp/pip-build-tracker-t48_pu74 2023-10-16T09:05:54,378 Created temporary directory: /tmp/pip-wheel-_xq9u9r9 2023-10-16T09:05:54,381 Created temporary directory: /tmp/pip-ephem-wheel-cache-b7qyd5qg 2023-10-16T09:05:54,403 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-16T09:05:54,407 2 location(s) to search for versions of nextflow: 2023-10-16T09:05:54,407 * https://pypi.org/simple/nextflow/ 2023-10-16T09:05:54,407 * https://www.piwheels.org/simple/nextflow/ 2023-10-16T09:05:54,408 Fetching project page and analyzing links: https://pypi.org/simple/nextflow/ 2023-10-16T09:05:54,409 Getting page https://pypi.org/simple/nextflow/ 2023-10-16T09:05:54,410 Found index url https://pypi.org/simple/ 2023-10-16T09:05:54,630 Fetched page https://pypi.org/simple/nextflow/ as application/vnd.pypi.simple.v1+json 2023-10-16T09:05:54,632 Found link https://files.pythonhosted.org/packages/d9/3d/162f93ee2c674b19e07782850b8e1044168c3615a9e3e3a9a2d75ad45e8a/nextflow-22.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.1 2023-10-16T09:05:54,633 Found link https://files.pythonhosted.org/packages/0b/00/f6d3c8d84864605147aa79ec17f763fd394f9cfaded672101e3d07bc0345/nextflow-22.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.6 2023-10-16T09:05:54,634 Found link https://files.pythonhosted.org/packages/f5/e8/e0882a1aad0b30b3ac760ae69914ffe986706f12d6539a1c0a08759d0e2b/nextflow-22.10.7.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.7 2023-10-16T09:05:54,634 Found link https://files.pythonhosted.org/packages/d5/eb/d7cd6b33724ea6c37f8dfd4ed4354a06ed66e8a87bb6c50cca26afa3d210/nextflow-23.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.1 2023-10-16T09:05:54,635 Found link https://files.pythonhosted.org/packages/77/eb/6f5e7d09188ac1fedc1b20c5bb3c679302cda22398c49682f8f3213565db/nextflow-23.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.2 2023-10-16T09:05:54,636 Found link https://files.pythonhosted.org/packages/37/0f/cd4e2d76402ebd60994753df846a4581fe1cd2c5c8ecfad4a0758328edf9/nextflow-23.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.3 2023-10-16T09:05:54,636 Found link https://files.pythonhosted.org/packages/7f/a1/ef4e714fdc8de1cf27f285565feea47eec4c85b96fc9063a07fe8215ef83/nextflow-23.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.4 2023-10-16T09:05:54,637 Found link https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.0 2023-10-16T09:05:54,638 Fetching project page and analyzing links: https://www.piwheels.org/simple/nextflow/ 2023-10-16T09:05:54,639 Getting page https://www.piwheels.org/simple/nextflow/ 2023-10-16T09:05:54,640 Found index url https://www.piwheels.org/simple/ 2023-10-16T09:05:54,818 Fetched page https://www.piwheels.org/simple/nextflow/ as text/html 2023-10-16T09:05:54,821 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.4-py3-none-any.whl#sha256=07d049d85a7b1f1772982e66a45e970378c1b3e4a0aa11e94bff54eea2facfaf (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,822 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.3-py3-none-any.whl#sha256=1d2114b09aec49a7701bb1480ca7ce83e23acd47cdb495a709384efc2a525948 (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,822 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.2-py3-none-any.whl#sha256=2056f24035f07ee610923e7a8ec19e52b141789365e337ccf71e27a365a68ce6 (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,823 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-23.4.1-py3-none-any.whl#sha256=c07e0059e657c9519b9cc0b41d127157c166bf9116bacb750aa5fbf8ef9e9a55 (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,824 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.7-py3-none-any.whl#sha256=bd32f54d735936e85cc14b26070f88d5b86f2fda68079680e58d5dcd6472ecdd (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,824 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.6-py3-none-any.whl#sha256=10d80820a116271df8dd0c21f0373823dbf31f40715ebb305d3b85d49f39ad72 (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,825 Skipping link: No binaries permitted for nextflow: https://www.piwheels.org/simple/nextflow/nextflow-22.10.1-py3-none-any.whl#sha256=746fe26a0a4083913632e05683071cc2fe41d7780835714a38c1d44116ff9073 (from https://www.piwheels.org/simple/nextflow/) 2023-10-16T09:05:54,825 Skipping link: not a file: https://www.piwheels.org/simple/nextflow/ 2023-10-16T09:05:54,826 Skipping link: not a file: https://pypi.org/simple/nextflow/ 2023-10-16T09:05:54,845 Given no hashes to check 1 links for project 'nextflow': discarding no candidates 2023-10-16T09:05:54,865 Collecting nextflow==23.10.0 2023-10-16T09:05:54,867 Created temporary directory: /tmp/pip-unpack-y4nrx8xu 2023-10-16T09:05:55,082 Downloading nextflow-23.10.0.tar.gz (7.1 kB) 2023-10-16T09:05:55,108 Added nextflow==23.10.0 from https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-t48_pu74' 2023-10-16T09:05:55,110 Running setup.py (path:/tmp/pip-wheel-_xq9u9r9/nextflow_c7f78b8f9d59402b881a041f3ad416c5/setup.py) egg_info for package nextflow 2023-10-16T09:05:55,111 Created temporary directory: /tmp/pip-pip-egg-info-s65m2a4r 2023-10-16T09:05:55,111 Preparing metadata (setup.py): started 2023-10-16T09:05:55,113 Running command python setup.py egg_info 2023-10-16T09:05:56,152 running egg_info 2023-10-16T09:05:56,153 creating /tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info 2023-10-16T09:05:56,181 writing /tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info/PKG-INFO 2023-10-16T09:05:56,184 writing dependency_links to /tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info/dependency_links.txt 2023-10-16T09:05:56,185 writing top-level names to /tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info/top_level.txt 2023-10-16T09:05:56,187 writing manifest file '/tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info/SOURCES.txt' 2023-10-16T09:05:56,259 reading manifest file '/tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info/SOURCES.txt' 2023-10-16T09:05:56,262 writing manifest file '/tmp/pip-pip-egg-info-s65m2a4r/nextflow.egg-info/SOURCES.txt' 2023-10-16T09:05:56,370 Preparing metadata (setup.py): finished with status 'done' 2023-10-16T09:05:56,373 Source in /tmp/pip-wheel-_xq9u9r9/nextflow_c7f78b8f9d59402b881a041f3ad416c5 has version 23.10.0, which satisfies requirement nextflow==23.10.0 from https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz 2023-10-16T09:05:56,374 Removed nextflow==23.10.0 from https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-t48_pu74' 2023-10-16T09:05:56,378 Created temporary directory: /tmp/pip-unpack-iil1021k 2023-10-16T09:05:56,379 Created temporary directory: /tmp/pip-unpack-2s1o3bdz 2023-10-16T09:05:56,382 Building wheels for collected packages: nextflow 2023-10-16T09:05:56,386 Created temporary directory: /tmp/pip-wheel-taer36sp 2023-10-16T09:05:56,386 Building wheel for nextflow (setup.py): started 2023-10-16T09:05:56,388 Destination directory: /tmp/pip-wheel-taer36sp 2023-10-16T09:05:56,388 Running command python setup.py bdist_wheel 2023-10-16T09:05:57,380 running bdist_wheel 2023-10-16T09:05:57,475 running build 2023-10-16T09:05:57,476 running build_scripts 2023-10-16T09:05:57,476 creating build 2023-10-16T09:05:57,477 creating build/scripts-3.11 2023-10-16T09:05:57,478 copying launcher/nextflow -> build/scripts-3.11 2023-10-16T09:05:57,480 changing mode of build/scripts-3.11/nextflow from 644 to 755 2023-10-16T09:05:57,505 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-16T09:05:57,505 !! 2023-10-16T09:05:57,506 ******************************************************************************** 2023-10-16T09:05:57,507 Please avoid running ``setup.py`` directly. 2023-10-16T09:05:57,507 Instead, use pypa/build, pypa/installer or other 2023-10-16T09:05:57,508 standards-based tools. 2023-10-16T09:05:57,509 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-16T09:05:57,509 ******************************************************************************** 2023-10-16T09:05:57,510 !! 2023-10-16T09:05:57,511 self.initialize_options() 2023-10-16T09:05:57,530 installing to build/bdist.linux-armv7l/wheel 2023-10-16T09:05:57,530 running install 2023-10-16T09:05:57,554 running install_egg_info 2023-10-16T09:05:57,638 running egg_info 2023-10-16T09:05:57,661 writing nextflow.egg-info/PKG-INFO 2023-10-16T09:05:57,664 writing dependency_links to nextflow.egg-info/dependency_links.txt 2023-10-16T09:05:57,666 writing top-level names to nextflow.egg-info/top_level.txt 2023-10-16T09:05:57,691 reading manifest file 'nextflow.egg-info/SOURCES.txt' 2023-10-16T09:05:57,694 writing manifest file 'nextflow.egg-info/SOURCES.txt' 2023-10-16T09:05:57,696 Copying nextflow.egg-info to build/bdist.linux-armv7l/wheel/nextflow-23.10.0-py3.11.egg-info 2023-10-16T09:05:57,703 running install_scripts 2023-10-16T09:05:57,704 creating build/bdist.linux-armv7l/wheel/nextflow-23.10.0.data 2023-10-16T09:05:57,705 creating build/bdist.linux-armv7l/wheel/nextflow-23.10.0.data/scripts 2023-10-16T09:05:57,706 copying build/scripts-3.11/nextflow -> build/bdist.linux-armv7l/wheel/nextflow-23.10.0.data/scripts 2023-10-16T09:05:57,708 changing mode of build/bdist.linux-armv7l/wheel/nextflow-23.10.0.data/scripts/nextflow to 755 2023-10-16T09:05:57,718 creating build/bdist.linux-armv7l/wheel/nextflow-23.10.0.dist-info/WHEEL 2023-10-16T09:05:57,720 creating '/tmp/pip-wheel-taer36sp/nextflow-23.10.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-16T09:05:57,724 adding 'nextflow-23.10.0.data/scripts/nextflow' 2023-10-16T09:05:57,727 adding 'nextflow-23.10.0.dist-info/METADATA' 2023-10-16T09:05:57,728 adding 'nextflow-23.10.0.dist-info/WHEEL' 2023-10-16T09:05:57,729 adding 'nextflow-23.10.0.dist-info/top_level.txt' 2023-10-16T09:05:57,729 adding 'nextflow-23.10.0.dist-info/RECORD' 2023-10-16T09:05:57,730 removing build/bdist.linux-armv7l/wheel 2023-10-16T09:05:57,846 Building wheel for nextflow (setup.py): finished with status 'done' 2023-10-16T09:05:57,849 Created wheel for nextflow: filename=nextflow-23.10.0-py3-none-any.whl size=7225 sha256=7d68961906a1c33d39660746da229605ecefc580b066c8458ebebf96e563549d 2023-10-16T09:05:57,850 Stored in directory: /tmp/pip-ephem-wheel-cache-b7qyd5qg/wheels/2b/c3/ce/8a0f82c783cb6d2007fa9fa943b9b67576dbe1fb3f2db9f24a 2023-10-16T09:05:57,859 Successfully built nextflow 2023-10-16T09:05:57,862 Removed build tracker: '/tmp/pip-build-tracker-t48_pu74'