2023-10-16T09:08:42,149 Created temporary directory: /tmp/pip-build-tracker-8mgxsxsd 2023-10-16T09:08:42,150 Initialized build tracking at /tmp/pip-build-tracker-8mgxsxsd 2023-10-16T09:08:42,151 Created build tracker: /tmp/pip-build-tracker-8mgxsxsd 2023-10-16T09:08:42,151 Entered build tracker: /tmp/pip-build-tracker-8mgxsxsd 2023-10-16T09:08:42,152 Created temporary directory: /tmp/pip-wheel-7g6x9sb2 2023-10-16T09:08:42,155 Created temporary directory: /tmp/pip-ephem-wheel-cache-utorhamv 2023-10-16T09:08:42,177 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-16T09:08:42,181 2 location(s) to search for versions of bluepyemodel: 2023-10-16T09:08:42,181 * https://pypi.org/simple/bluepyemodel/ 2023-10-16T09:08:42,181 * https://www.piwheels.org/simple/bluepyemodel/ 2023-10-16T09:08:42,181 Fetching project page and analyzing links: https://pypi.org/simple/bluepyemodel/ 2023-10-16T09:08:42,182 Getting page https://pypi.org/simple/bluepyemodel/ 2023-10-16T09:08:42,184 Found index url https://pypi.org/simple/ 2023-10-16T09:08:42,401 Fetched page https://pypi.org/simple/bluepyemodel/ as application/vnd.pypi.simple.v1+json 2023-10-16T09:08:42,413 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/77/ae/9e95ea0862330f97262af1bbd4317f66be2f17c82edf0a0c990552195635/bluepyemodel-0.0.16-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-10-16T09:08:42,414 Found link https://files.pythonhosted.org/packages/4e/bf/b26fd0e56561c6d04a5b8ddc69939b8302f33583126137055fa6e7a93a0a/bluepyemodel-0.0.16.tar.gz (from https://pypi.org/simple/bluepyemodel/), version: 0.0.16 2023-10-16T09:08:42,414 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/44/fd/556856c23025b90629675089e6058238fe2723b52a34b2ceabd04403e3c6/bluepyemodel-0.0.17-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-10-16T09:08:42,415 Found link 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https://files.pythonhosted.org/packages/9d/7c/7e575d4a7106b11cedffc48e0eadfea3648a56f1bda9d2f5908071b862fd/bluepyemodel-0.0.45.tar.gz (from https://pypi.org/simple/bluepyemodel/), version: 0.0.45 2023-10-16T09:08:42,452 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/f5/c4/ac4bcb42c16f3f737fb2e3d27ed66dfdb727ae7dfa0921f5d880ef646728/bluepyemodel-0.0.46-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-10-16T09:08:42,453 Found link https://files.pythonhosted.org/packages/ea/a2/c66de609a27813d92cdbeee4b9637061af84183d3e7dc45a7b6e1da2c721/bluepyemodel-0.0.46.tar.gz (from https://pypi.org/simple/bluepyemodel/), version: 0.0.46 2023-10-16T09:08:42,454 Fetching project page and analyzing links: https://www.piwheels.org/simple/bluepyemodel/ 2023-10-16T09:08:42,454 Getting page https://www.piwheels.org/simple/bluepyemodel/ 2023-10-16T09:08:42,456 Found index url https://www.piwheels.org/simple/ 2023-10-16T09:08:42,622 Fetched page 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hashes to check 1 links for project 'bluepyemodel': discarding no candidates 2023-10-16T09:08:42,689 Collecting bluepyemodel==0.0.46 2023-10-16T09:08:42,692 Created temporary directory: /tmp/pip-unpack-72lecf7g 2023-10-16T09:08:42,932 Downloading bluepyemodel-0.0.46.tar.gz (13.0 MB) 2023-10-16T09:08:47,612 Added bluepyemodel==0.0.46 from https://files.pythonhosted.org/packages/ea/a2/c66de609a27813d92cdbeee4b9637061af84183d3e7dc45a7b6e1da2c721/bluepyemodel-0.0.46.tar.gz to build tracker '/tmp/pip-build-tracker-8mgxsxsd' 2023-10-16T09:08:47,613 Running setup.py (path:/tmp/pip-wheel-7g6x9sb2/bluepyemodel_9f4b8e449bdf496ea91e766feb8e7dab/setup.py) egg_info for package bluepyemodel 2023-10-16T09:08:47,614 Created temporary directory: /tmp/pip-pip-egg-info-shj45gi6 2023-10-16T09:08:47,615 Preparing metadata (setup.py): started 2023-10-16T09:08:47,616 Running command python setup.py egg_info 2023-10-16T09:08:48,046 /tmp/pip-wheel-7g6x9sb2/bluepyemodel_9f4b8e449bdf496ea91e766feb8e7dab/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-10-16T09:08:48,046 import imp 2023-10-16T09:08:48,324 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-16T09:08:48,324 !! 2023-10-16T09:08:48,326 ******************************************************************************** 2023-10-16T09:08:48,326 Requirements should be satisfied by a PEP 517 installer. 2023-10-16T09:08:48,327 If you are using pip, you can try `pip install --use-pep517`. 2023-10-16T09:08:48,327 ******************************************************************************** 2023-10-16T09:08:48,328 !! 2023-10-16T09:08:48,329 dist.fetch_build_eggs(dist.setup_requires) 2023-10-16T09:08:51,385 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-10-16T09:08:51,518 running egg_info 2023-10-16T09:08:51,519 creating /tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info 2023-10-16T09:08:51,545 writing /tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/PKG-INFO 2023-10-16T09:08:51,553 writing dependency_links to /tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/dependency_links.txt 2023-10-16T09:08:51,558 writing requirements to /tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/requires.txt 2023-10-16T09:08:51,560 writing top-level names to /tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/top_level.txt 2023-10-16T09:08:51,561 writing manifest file '/tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/SOURCES.txt' 2023-10-16T09:08:51,735 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-16T09:08:51,741 reading manifest file '/tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/SOURCES.txt' 2023-10-16T09:08:51,743 reading manifest template 'MANIFEST.in' 2023-10-16T09:08:51,744 adding license file 'LICENSE.txt' 2023-10-16T09:08:51,744 adding license file 'COPYING' 2023-10-16T09:08:51,745 adding license file 'AUTHORS.txt' 2023-10-16T09:08:51,749 writing manifest file '/tmp/pip-pip-egg-info-shj45gi6/bluepyemodel.egg-info/SOURCES.txt' 2023-10-16T09:08:51,866 Preparing metadata (setup.py): finished with status 'done' 2023-10-16T09:08:51,870 Source in /tmp/pip-wheel-7g6x9sb2/bluepyemodel_9f4b8e449bdf496ea91e766feb8e7dab has version 0.0.46, which satisfies requirement bluepyemodel==0.0.46 from https://files.pythonhosted.org/packages/ea/a2/c66de609a27813d92cdbeee4b9637061af84183d3e7dc45a7b6e1da2c721/bluepyemodel-0.0.46.tar.gz 2023-10-16T09:08:51,871 Removed bluepyemodel==0.0.46 from https://files.pythonhosted.org/packages/ea/a2/c66de609a27813d92cdbeee4b9637061af84183d3e7dc45a7b6e1da2c721/bluepyemodel-0.0.46.tar.gz from build tracker '/tmp/pip-build-tracker-8mgxsxsd' 2023-10-16T09:08:51,876 Created temporary directory: /tmp/pip-unpack-d_t1oen5 2023-10-16T09:08:51,877 Created temporary directory: /tmp/pip-unpack-7rg4cv0u 2023-10-16T09:08:51,937 Building wheels for collected packages: bluepyemodel 2023-10-16T09:08:51,941 Created temporary directory: /tmp/pip-wheel-5uu1tr6u 2023-10-16T09:08:51,941 Building wheel for bluepyemodel (setup.py): started 2023-10-16T09:08:51,942 Destination directory: /tmp/pip-wheel-5uu1tr6u 2023-10-16T09:08:51,943 Running command python setup.py bdist_wheel 2023-10-16T09:08:52,379 /tmp/pip-wheel-7g6x9sb2/bluepyemodel_9f4b8e449bdf496ea91e766feb8e7dab/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-10-16T09:08:52,380 import imp 2023-10-16T09:08:52,650 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-16T09:08:52,651 !! 2023-10-16T09:08:52,652 ******************************************************************************** 2023-10-16T09:08:52,652 Requirements should be satisfied by a PEP 517 installer. 2023-10-16T09:08:52,653 If you are using pip, you can try `pip install --use-pep517`. 2023-10-16T09:08:52,654 ******************************************************************************** 2023-10-16T09:08:52,655 !! 2023-10-16T09:08:52,655 dist.fetch_build_eggs(dist.setup_requires) 2023-10-16T09:08:53,172 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-10-16T09:08:53,268 running bdist_wheel 2023-10-16T09:08:53,372 running build 2023-10-16T09:08:53,372 running build_py 2023-10-16T09:08:53,403 creating build 2023-10-16T09:08:53,403 creating build/lib 2023-10-16T09:08:53,404 creating build/lib/tests 2023-10-16T09:08:53,405 copying tests/__init__.py -> build/lib/tests 2023-10-16T09:08:53,407 creating build/lib/bluepyemodel 2023-10-16T09:08:53,408 copying bluepyemodel/__init__.py -> build/lib/bluepyemodel 2023-10-16T09:08:53,411 creating build/lib/tests/functional_tests 2023-10-16T09:08:53,412 copying tests/functional_tests/test_protocols.py -> build/lib/tests/functional_tests 2023-10-16T09:08:53,413 copying tests/functional_tests/__init__.py -> build/lib/tests/functional_tests 2023-10-16T09:08:53,415 copying tests/functional_tests/test_validation.py -> build/lib/tests/functional_tests 2023-10-16T09:08:53,418 creating build/lib/tests/unit_tests 2023-10-16T09:08:53,419 copying tests/unit_tests/test_fitness_calculator_configuration.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,421 copying tests/unit_tests/test_tools.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,423 copying tests/unit_tests/test_local_access_point.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,425 copying tests/unit_tests/__init__.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,427 copying tests/unit_tests/test_emodelmetadata.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,429 copying tests/unit_tests/test_ecodes.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,432 copying tests/unit_tests/test_plotting.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,433 copying tests/unit_tests/test_targets_configuration.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,435 copying tests/unit_tests/test_model_parameters_configuration.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,437 copying tests/unit_tests/test_optimisation.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,439 copying tests/unit_tests/test_evaluator.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,441 copying tests/unit_tests/test_emodel_pipeline.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,442 copying tests/unit_tests/test_validation_functions.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,444 copying tests/unit_tests/test_model.py -> build/lib/tests/unit_tests 2023-10-16T09:08:53,446 creating build/lib/tests/test_models 2023-10-16T09:08:53,447 copying tests/test_models/__init__.py -> build/lib/tests/test_models 2023-10-16T09:08:53,448 copying tests/test_models/dummycells.py -> build/lib/tests/test_models 2023-10-16T09:08:53,450 creating build/lib/bluepyemodel/export_emodel 2023-10-16T09:08:53,451 copying bluepyemodel/export_emodel/__init__.py -> build/lib/bluepyemodel/export_emodel 2023-10-16T09:08:53,453 copying bluepyemodel/export_emodel/utils.py -> build/lib/bluepyemodel/export_emodel 2023-10-16T09:08:53,455 copying bluepyemodel/export_emodel/export_emodel.py -> build/lib/bluepyemodel/export_emodel 2023-10-16T09:08:53,458 creating build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,458 copying bluepyemodel/ecode/customfromfile.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,460 copying bluepyemodel/ecode/comb.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,462 copying bluepyemodel/ecode/stimulus.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,464 copying bluepyemodel/ecode/__init__.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,466 copying bluepyemodel/ecode/ramp.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,468 copying bluepyemodel/ecode/negcheops.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,470 copying bluepyemodel/ecode/sinespec.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,472 copying bluepyemodel/ecode/probampanmda_ems.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,473 copying bluepyemodel/ecode/subwhitenoise.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,475 copying bluepyemodel/ecode/random_square_inputs.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,477 copying bluepyemodel/ecode/sahp.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,479 copying bluepyemodel/ecode/hyperdepol.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,481 copying bluepyemodel/ecode/dendrite.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,483 copying bluepyemodel/ecode/noiseou3.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,485 copying bluepyemodel/ecode/noise.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,487 copying bluepyemodel/ecode/apwaveform.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,488 copying bluepyemodel/ecode/spikerec.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,490 copying bluepyemodel/ecode/poscheops.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,492 copying bluepyemodel/ecode/dehyperpol.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,494 copying bluepyemodel/ecode/firepattern.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,496 copying bluepyemodel/ecode/idrest.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,498 copying bluepyemodel/ecode/whitenoise.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,500 copying bluepyemodel/ecode/iv.py -> build/lib/bluepyemodel/ecode 2023-10-16T09:08:53,502 creating build/lib/bluepyemodel/validation 2023-10-16T09:08:53,503 copying bluepyemodel/validation/__init__.py -> build/lib/bluepyemodel/validation 2023-10-16T09:08:53,504 copying bluepyemodel/validation/validation.py -> build/lib/bluepyemodel/validation 2023-10-16T09:08:53,506 copying bluepyemodel/validation/validation_functions.py -> build/lib/bluepyemodel/validation 2023-10-16T09:08:53,508 creating build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,509 copying bluepyemodel/evaluation/evaluator.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,512 copying bluepyemodel/evaluation/__init__.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,513 copying bluepyemodel/evaluation/recordings.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,515 copying bluepyemodel/evaluation/modifiers.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,518 copying bluepyemodel/evaluation/efeature_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,519 copying bluepyemodel/evaluation/efel_feature_bpem.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,521 copying bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,524 copying bluepyemodel/evaluation/protocols.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,526 copying bluepyemodel/evaluation/protocol_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,528 copying bluepyemodel/evaluation/evaluation.py -> build/lib/bluepyemodel/evaluation 2023-10-16T09:08:53,531 creating build/lib/bluepyemodel/model 2023-10-16T09:08:53,532 copying bluepyemodel/model/model.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,535 copying bluepyemodel/model/model_configuration.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,536 copying bluepyemodel/model/__init__.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,538 copying bluepyemodel/model/neuron_model_configuration.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,540 copying bluepyemodel/model/utils.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,542 copying bluepyemodel/model/parameter_configuration.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,544 copying bluepyemodel/model/model_configurator.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,545 copying bluepyemodel/model/mechanism_configuration.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,547 copying bluepyemodel/model/distribution_configuration.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,550 copying bluepyemodel/model/morphology_configuration.py -> build/lib/bluepyemodel/model 2023-10-16T09:08:53,552 creating build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,553 copying bluepyemodel/efeatures_extraction/targets_configurator.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,555 copying bluepyemodel/efeatures_extraction/trace_file.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,557 copying bluepyemodel/efeatures_extraction/__init__.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,558 copying bluepyemodel/efeatures_extraction/auto_targets.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,560 copying bluepyemodel/efeatures_extraction/targets_configuration.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,562 copying bluepyemodel/efeatures_extraction/target.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,564 copying bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-16T09:08:53,567 creating build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,568 copying bluepyemodel/emodel_pipeline/__init__.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,570 copying bluepyemodel/emodel_pipeline/emodel_settings.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,572 copying bluepyemodel/emodel_pipeline/emodel.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,574 copying bluepyemodel/emodel_pipeline/emodel_script.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,575 copying bluepyemodel/emodel_pipeline/plotting.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,578 copying bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,579 copying bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,582 copying bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-16T09:08:53,584 creating build/lib/bluepyemodel/optimisation 2023-10-16T09:08:53,585 copying bluepyemodel/optimisation/__init__.py -> build/lib/bluepyemodel/optimisation 2023-10-16T09:08:53,587 copying bluepyemodel/optimisation/optimisation.py -> build/lib/bluepyemodel/optimisation 2023-10-16T09:08:53,589 creating build/lib/bluepyemodel/tools 2023-10-16T09:08:53,590 copying bluepyemodel/tools/multiprocessing.py -> build/lib/bluepyemodel/tools 2023-10-16T09:08:53,592 copying bluepyemodel/tools/__init__.py -> build/lib/bluepyemodel/tools 2023-10-16T09:08:53,593 copying bluepyemodel/tools/mechanisms.py -> build/lib/bluepyemodel/tools 2023-10-16T09:08:53,595 copying bluepyemodel/tools/search_pdfs.py -> build/lib/bluepyemodel/tools 2023-10-16T09:08:53,597 copying bluepyemodel/tools/morphology.py -> build/lib/bluepyemodel/tools 2023-10-16T09:08:53,599 copying bluepyemodel/tools/utils.py -> build/lib/bluepyemodel/tools 2023-10-16T09:08:53,601 creating build/lib/bluepyemodel/tasks 2023-10-16T09:08:53,602 copying bluepyemodel/tasks/__init__.py -> build/lib/bluepyemodel/tasks 2023-10-16T09:08:53,604 copying bluepyemodel/tasks/luigi_custom.py -> build/lib/bluepyemodel/tasks 2023-10-16T09:08:53,606 copying bluepyemodel/tasks/luigi_tools.py -> build/lib/bluepyemodel/tasks 2023-10-16T09:08:53,607 copying bluepyemodel/tasks/config.py -> build/lib/bluepyemodel/tasks 2023-10-16T09:08:53,609 creating build/lib/bluepyemodel/access_point 2023-10-16T09:08:53,610 copying bluepyemodel/access_point/__init__.py -> build/lib/bluepyemodel/access_point 2023-10-16T09:08:53,612 copying bluepyemodel/access_point/access_point.py -> build/lib/bluepyemodel/access_point 2023-10-16T09:08:53,614 copying bluepyemodel/access_point/local.py -> build/lib/bluepyemodel/access_point 2023-10-16T09:08:53,617 creating build/lib/bluepyemodel/tasks/emodel_creation 2023-10-16T09:08:53,618 copying bluepyemodel/tasks/emodel_creation/__init__.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-10-16T09:08:53,620 copying bluepyemodel/tasks/emodel_creation/optimisation.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-10-16T09:08:53,623 running egg_info 2023-10-16T09:08:53,675 writing bluepyemodel.egg-info/PKG-INFO 2023-10-16T09:08:53,683 writing dependency_links to bluepyemodel.egg-info/dependency_links.txt 2023-10-16T09:08:53,688 writing requirements to bluepyemodel.egg-info/requires.txt 2023-10-16T09:08:53,689 writing top-level names to bluepyemodel.egg-info/top_level.txt 2023-10-16T09:08:53,786 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-16T09:08:53,789 reading manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-10-16T09:08:53,806 reading manifest template 'MANIFEST.in' 2023-10-16T09:08:53,807 adding license file 'LICENSE.txt' 2023-10-16T09:08:53,807 adding license file 'COPYING' 2023-10-16T09:08:53,808 adding license file 'AUTHORS.txt' 2023-10-16T09:08:53,816 writing manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-10-16T09:08:53,819 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.ecode.data' is absent from the `packages` configuration. 2023-10-16T09:08:53,820 !! 2023-10-16T09:08:53,821 ******************************************************************************** 2023-10-16T09:08:53,822 ############################ 2023-10-16T09:08:53,822 # Package would be ignored # 2023-10-16T09:08:53,822 ############################ 2023-10-16T09:08:53,823 Python recognizes 'bluepyemodel.ecode.data' as an importable package[^1], 2023-10-16T09:08:53,823 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,824 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,825 package, please make sure that 'bluepyemodel.ecode.data' is explicitly added 2023-10-16T09:08:53,825 to the `packages` configuration field. 2023-10-16T09:08:53,826 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,826 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,827 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,828 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:53,829 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:53,829 If you don't want 'bluepyemodel.ecode.data' to be distributed and are 2023-10-16T09:08:53,830 already explicitly excluding 'bluepyemodel.ecode.data' via 2023-10-16T09:08:53,830 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:53,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:53,831 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:53,833 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:53,834 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:53,835 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:53,836 even if it does not contain any `.py` files. 2023-10-16T09:08:53,836 On the other hand, currently there is no concept of package data 2023-10-16T09:08:53,837 directory, all directories are treated like packages. 2023-10-16T09:08:53,837 ******************************************************************************** 2023-10-16T09:08:53,839 !! 2023-10-16T09:08:53,839 check.warn(importable) 2023-10-16T09:08:53,840 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.export_emodel.templates' is absent from the `packages` configuration. 2023-10-16T09:08:53,840 !! 2023-10-16T09:08:53,841 ******************************************************************************** 2023-10-16T09:08:53,842 ############################ 2023-10-16T09:08:53,842 # Package would be ignored # 2023-10-16T09:08:53,843 ############################ 2023-10-16T09:08:53,843 Python recognizes 'bluepyemodel.export_emodel.templates' as an importable package[^1], 2023-10-16T09:08:53,844 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,845 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,845 package, please make sure that 'bluepyemodel.export_emodel.templates' is explicitly added 2023-10-16T09:08:53,846 to the `packages` configuration field. 2023-10-16T09:08:53,847 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,847 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,848 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,849 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:53,850 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:53,851 If you don't want 'bluepyemodel.export_emodel.templates' to be distributed and are 2023-10-16T09:08:53,851 already explicitly excluding 'bluepyemodel.export_emodel.templates' via 2023-10-16T09:08:53,851 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:53,852 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:53,852 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:53,853 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:53,854 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:53,855 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:53,856 even if it does not contain any `.py` files. 2023-10-16T09:08:53,856 On the other hand, currently there is no concept of package data 2023-10-16T09:08:53,857 directory, all directories are treated like packages. 2023-10-16T09:08:53,857 ******************************************************************************** 2023-10-16T09:08:53,859 !! 2023-10-16T09:08:53,859 check.warn(importable) 2023-10-16T09:08:53,860 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data' is absent from the `packages` configuration. 2023-10-16T09:08:53,860 !! 2023-10-16T09:08:53,861 ******************************************************************************** 2023-10-16T09:08:53,862 ############################ 2023-10-16T09:08:53,863 # Package would be ignored # 2023-10-16T09:08:53,863 ############################ 2023-10-16T09:08:53,864 Python recognizes 'tests.test_data' as an importable package[^1], 2023-10-16T09:08:53,864 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,865 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,866 package, please make sure that 'tests.test_data' is explicitly added 2023-10-16T09:08:53,867 to the `packages` configuration field. 2023-10-16T09:08:53,869 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,870 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,870 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,871 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:53,872 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:53,873 If you don't want 'tests.test_data' to be distributed and are 2023-10-16T09:08:53,874 already explicitly excluding 'tests.test_data' via 2023-10-16T09:08:53,874 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:53,875 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:53,875 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:53,876 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:53,877 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:53,879 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:53,880 even if it does not contain any `.py` files. 2023-10-16T09:08:53,880 On the other hand, currently there is no concept of package data 2023-10-16T09:08:53,881 directory, all directories are treated like packages. 2023-10-16T09:08:53,881 ******************************************************************************** 2023-10-16T09:08:53,883 !! 2023-10-16T09:08:53,883 check.warn(importable) 2023-10-16T09:08:53,883 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.config' is absent from the `packages` configuration. 2023-10-16T09:08:53,884 !! 2023-10-16T09:08:53,884 ******************************************************************************** 2023-10-16T09:08:53,885 ############################ 2023-10-16T09:08:53,885 # Package would be ignored # 2023-10-16T09:08:53,886 ############################ 2023-10-16T09:08:53,886 Python recognizes 'tests.test_data.config' as an importable package[^1], 2023-10-16T09:08:53,887 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,888 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,888 package, please make sure that 'tests.test_data.config' is explicitly added 2023-10-16T09:08:53,889 to the `packages` configuration field. 2023-10-16T09:08:53,889 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,890 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,890 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,892 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:53,892 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:53,893 If you don't want 'tests.test_data.config' to be distributed and are 2023-10-16T09:08:53,894 already explicitly excluding 'tests.test_data.config' via 2023-10-16T09:08:53,894 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:53,895 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:53,895 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:53,896 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:53,897 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:53,899 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:53,899 even if it does not contain any `.py` files. 2023-10-16T09:08:53,900 On the other hand, currently there is no concept of package data 2023-10-16T09:08:53,900 directory, all directories are treated like packages. 2023-10-16T09:08:53,901 ******************************************************************************** 2023-10-16T09:08:53,901 !! 2023-10-16T09:08:53,902 check.warn(importable) 2023-10-16T09:08:53,902 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.ephys_data' is absent from the `packages` configuration. 2023-10-16T09:08:53,903 !! 2023-10-16T09:08:53,904 ******************************************************************************** 2023-10-16T09:08:53,904 ############################ 2023-10-16T09:08:53,905 # Package would be ignored # 2023-10-16T09:08:53,905 ############################ 2023-10-16T09:08:53,906 Python recognizes 'tests.test_data.ephys_data' as an importable package[^1], 2023-10-16T09:08:53,906 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,907 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,908 package, please make sure that 'tests.test_data.ephys_data' is explicitly added 2023-10-16T09:08:53,908 to the `packages` configuration field. 2023-10-16T09:08:53,909 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,910 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,910 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,911 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:53,912 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:53,913 If you don't want 'tests.test_data.ephys_data' to be distributed and are 2023-10-16T09:08:53,913 already explicitly excluding 'tests.test_data.ephys_data' via 2023-10-16T09:08:53,914 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:53,914 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:53,915 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:53,916 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:53,916 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:53,918 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:53,918 even if it does not contain any `.py` files. 2023-10-16T09:08:53,919 On the other hand, currently there is no concept of package data 2023-10-16T09:08:53,919 directory, all directories are treated like packages. 2023-10-16T09:08:53,920 ******************************************************************************** 2023-10-16T09:08:53,920 !! 2023-10-16T09:08:53,921 check.warn(importable) 2023-10-16T09:08:53,921 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.mechanisms' is absent from the `packages` configuration. 2023-10-16T09:08:53,922 !! 2023-10-16T09:08:53,923 ******************************************************************************** 2023-10-16T09:08:53,923 ############################ 2023-10-16T09:08:53,924 # Package would be ignored # 2023-10-16T09:08:53,924 ############################ 2023-10-16T09:08:53,924 Python recognizes 'tests.test_data.mechanisms' as an importable package[^1], 2023-10-16T09:08:53,925 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,926 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,927 package, please make sure that 'tests.test_data.mechanisms' is explicitly added 2023-10-16T09:08:53,927 to the `packages` configuration field. 2023-10-16T09:08:53,928 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,929 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,930 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:53,932 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:53,933 If you don't want 'tests.test_data.mechanisms' to be distributed and are 2023-10-16T09:08:53,933 already explicitly excluding 'tests.test_data.mechanisms' via 2023-10-16T09:08:53,934 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:53,934 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:53,935 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:53,936 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:53,938 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:53,939 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:53,939 even if it does not contain any `.py` files. 2023-10-16T09:08:53,940 On the other hand, currently there is no concept of package data 2023-10-16T09:08:53,940 directory, all directories are treated like packages. 2023-10-16T09:08:53,941 ******************************************************************************** 2023-10-16T09:08:53,942 !! 2023-10-16T09:08:53,942 check.warn(importable) 2023-10-16T09:08:53,942 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.morphology' is absent from the `packages` configuration. 2023-10-16T09:08:53,943 !! 2023-10-16T09:08:53,944 ******************************************************************************** 2023-10-16T09:08:53,944 ############################ 2023-10-16T09:08:53,944 # Package would be ignored # 2023-10-16T09:08:53,945 ############################ 2023-10-16T09:08:53,945 Python recognizes 'tests.test_data.morphology' as an importable package[^1], 2023-10-16T09:08:53,946 but it is absent from setuptools' `packages` configuration. 2023-10-16T09:08:53,947 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-16T09:08:53,947 package, please make sure that 'tests.test_data.morphology' is explicitly added 2023-10-16T09:08:53,948 to the `packages` configuration field. 2023-10-16T09:08:53,949 Alternatively, you can also rely on setuptools' discovery methods 2023-10-16T09:08:53,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-16T09:08:53,950 instead of `find_packages(...)`/`find:`). 2023-10-16T09:08:53,964 You can read more about "package discovery" on setuptools documentation page: 2023-10-16T09:08:54,004 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-16T09:08:54,008 If you don't want 'tests.test_data.morphology' to be distributed and are 2023-10-16T09:08:54,008 already explicitly excluding 'tests.test_data.morphology' via 2023-10-16T09:08:54,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-16T09:08:54,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-16T09:08:54,010 combination with a more fine grained `package-data` configuration. 2023-10-16T09:08:54,011 You can read more about "package data files" on setuptools documentation page: 2023-10-16T09:08:54,012 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-16T09:08:54,013 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-16T09:08:54,014 even if it does not contain any `.py` files. 2023-10-16T09:08:54,014 On the other hand, currently there is no concept of package data 2023-10-16T09:08:54,015 directory, all directories are treated like packages. 2023-10-16T09:08:54,015 ******************************************************************************** 2023-10-16T09:08:54,016 !! 2023-10-16T09:08:54,017 check.warn(importable) 2023-10-16T09:08:54,017 creating build/lib/tests/test_data 2023-10-16T09:08:54,018 copying tests/test_data/final.json -> build/lib/tests/test_data 2023-10-16T09:08:54,018 copying tests/test_data/final_tmp.json -> build/lib/tests/test_data 2023-10-16T09:08:54,019 copying tests/test_data/test_APWaveform_320.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,019 copying tests/test_data/test_IV_-100.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,020 copying tests/test_data/test_RMPProtocol.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,020 copying tests/test_data/test_RinProtocol.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,021 copying tests/test_data/test_SpikeRec_600.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,021 copying tests/test_data/test_Step_200.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,022 copying tests/test_data/test_Step_280.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,022 copying tests/test_data/test_bAP.ca_ais.cai.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,023 copying tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,023 copying tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,023 copying tests/test_data/test_bAP.ca_soma.cai.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,024 copying tests/test_data/test_bAP.dend1.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,024 copying tests/test_data/test_bAP.dend2.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,025 copying tests/test_data/test_bAP.soma.v.csv -> build/lib/tests/test_data 2023-10-16T09:08:54,025 copying tests/test_data/test_features.json -> build/lib/tests/test_data 2023-10-16T09:08:54,025 copying tests/test_data/test_mechanisms.json -> build/lib/tests/test_data 2023-10-16T09:08:54,026 copying tests/test_data/test_parameters.json -> build/lib/tests/test_data 2023-10-16T09:08:54,026 copying tests/test_data/test_protocols.json -> build/lib/tests/test_data 2023-10-16T09:08:54,027 copying tests/test_data/test_recipes.json -> build/lib/tests/test_data 2023-10-16T09:08:54,027 creating build/lib/tests/test_data/config 2023-10-16T09:08:54,028 copying tests/test_data/config/config_dict.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,028 copying tests/test_data/config/features.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,029 copying tests/test_data/config/params.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,029 copying tests/test_data/config/params_restart.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,030 copying tests/test_data/config/protocols.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,030 copying tests/test_data/config/recipes.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,030 copying tests/test_data/config/recipes_restart.json -> build/lib/tests/test_data/config 2023-10-16T09:08:54,031 creating build/lib/tests/test_data/ephys_data 2023-10-16T09:08:54,031 copying tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/lib/tests/test_data/ephys_data 2023-10-16T09:08:54,032 creating build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,032 copying tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,033 copying tests/test_data/mechanisms/Ca_HVA2.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,033 copying tests/test_data/mechanisms/Ca_LVAst.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,034 copying tests/test_data/mechanisms/Ih.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,034 copying tests/test_data/mechanisms/K_Pst.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,035 copying tests/test_data/mechanisms/K_Tst.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,035 copying tests/test_data/mechanisms/NaTg.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,036 copying tests/test_data/mechanisms/Nap_Et2.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,036 copying tests/test_data/mechanisms/SK_E2.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,037 copying tests/test_data/mechanisms/SKv3_1.mod -> build/lib/tests/test_data/mechanisms 2023-10-16T09:08:54,040 creating build/lib/tests/test_data/morphology 2023-10-16T09:08:54,043 copying tests/test_data/morphology/C060114A5.asc -> build/lib/tests/test_data/morphology 2023-10-16T09:08:54,045 creating build/lib/bluepyemodel/export_emodel/templates 2023-10-16T09:08:54,046 copying bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-16T09:08:54,049 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-16T09:08:54,051 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-16T09:08:54,053 creating build/lib/bluepyemodel/ecode/data 2023-10-16T09:08:54,054 copying bluepyemodel/ecode/data/NoiseOU3.txt -> build/lib/bluepyemodel/ecode/data 2023-10-16T09:08:54,495 copying bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-10-16T09:08:54,537 copying bluepyemodel/ecode/data/WhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-10-16T09:08:55,049 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-16T09:08:55,050 !! 2023-10-16T09:08:55,050 ******************************************************************************** 2023-10-16T09:08:55,051 Please avoid running ``setup.py`` directly. 2023-10-16T09:08:55,051 Instead, use pypa/build, pypa/installer or other 2023-10-16T09:08:55,052 standards-based tools. 2023-10-16T09:08:55,053 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-16T09:08:55,053 ******************************************************************************** 2023-10-16T09:08:55,054 !! 2023-10-16T09:08:55,055 self.initialize_options() 2023-10-16T09:08:55,075 installing to build/bdist.linux-armv7l/wheel 2023-10-16T09:08:55,076 running install 2023-10-16T09:08:55,100 running install_lib 2023-10-16T09:08:55,127 creating build/bdist.linux-armv7l 2023-10-16T09:08:55,127 creating build/bdist.linux-armv7l/wheel 2023-10-16T09:08:55,129 creating build/bdist.linux-armv7l/wheel/tests 2023-10-16T09:08:55,130 creating build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-16T09:08:55,131 copying build/lib/tests/functional_tests/test_protocols.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-16T09:08:55,133 copying build/lib/tests/functional_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-16T09:08:55,135 copying build/lib/tests/functional_tests/test_validation.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-16T09:08:55,137 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-10-16T09:08:55,140 creating build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,140 copying build/lib/tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,143 copying build/lib/tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,146 copying build/lib/tests/test_data/test_bAP.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,148 copying build/lib/tests/test_data/test_features.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,150 copying build/lib/tests/test_data/test_bAP.ca_soma.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,153 copying build/lib/tests/test_data/test_SpikeRec_600.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,156 creating build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,157 copying build/lib/tests/test_data/config/features.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,159 copying build/lib/tests/test_data/config/config_dict.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,161 copying build/lib/tests/test_data/config/params_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,164 copying build/lib/tests/test_data/config/protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,166 copying build/lib/tests/test_data/config/recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,167 copying build/lib/tests/test_data/config/params.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,169 copying build/lib/tests/test_data/config/recipes_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-16T09:08:55,171 copying build/lib/tests/test_data/test_Step_280.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,176 copying build/lib/tests/test_data/test_bAP.dend2.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,179 copying build/lib/tests/test_data/final_tmp.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,181 copying build/lib/tests/test_data/test_recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,183 copying build/lib/tests/test_data/test_bAP.ca_ais.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,188 copying build/lib/tests/test_data/test_Step_200.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,194 copying build/lib/tests/test_data/final.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,196 copying build/lib/tests/test_data/test_parameters.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,198 copying build/lib/tests/test_data/test_APWaveform_320.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,201 copying build/lib/tests/test_data/test_IV_-100.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,204 creating build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-10-16T09:08:55,205 copying build/lib/tests/test_data/morphology/C060114A5.asc -> build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-10-16T09:08:55,218 creating build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-10-16T09:08:55,219 copying build/lib/tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-10-16T09:08:55,299 copying build/lib/tests/test_data/test_RMPProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,301 copying build/lib/tests/test_data/test_bAP.dend1.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,304 creating build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,305 copying build/lib/tests/test_data/mechanisms/Ih.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,306 copying build/lib/tests/test_data/mechanisms/SKv3_1.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,308 copying build/lib/tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,310 copying build/lib/tests/test_data/mechanisms/SK_E2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,311 copying build/lib/tests/test_data/mechanisms/K_Tst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,313 copying build/lib/tests/test_data/mechanisms/NaTg.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,315 copying build/lib/tests/test_data/mechanisms/Ca_LVAst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,317 copying build/lib/tests/test_data/mechanisms/Nap_Et2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,318 copying build/lib/tests/test_data/mechanisms/K_Pst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,320 copying build/lib/tests/test_data/mechanisms/Ca_HVA2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-16T09:08:55,322 copying build/lib/tests/test_data/test_mechanisms.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,324 copying build/lib/tests/test_data/test_protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,325 copying build/lib/tests/test_data/test_RinProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-16T09:08:55,328 creating build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,329 copying build/lib/tests/unit_tests/test_fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,331 copying build/lib/tests/unit_tests/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,333 copying build/lib/tests/unit_tests/test_local_access_point.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,334 copying build/lib/tests/unit_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,336 copying build/lib/tests/unit_tests/test_emodelmetadata.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,338 copying build/lib/tests/unit_tests/test_ecodes.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,341 copying build/lib/tests/unit_tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,342 copying build/lib/tests/unit_tests/test_targets_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,344 copying build/lib/tests/unit_tests/test_model_parameters_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,346 copying build/lib/tests/unit_tests/test_optimisation.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,349 copying build/lib/tests/unit_tests/test_evaluator.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,351 copying build/lib/tests/unit_tests/test_emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,353 copying build/lib/tests/unit_tests/test_validation_functions.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,354 copying build/lib/tests/unit_tests/test_model.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-16T09:08:55,357 creating build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-16T09:08:55,357 copying build/lib/tests/test_models/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-16T09:08:55,359 copying build/lib/tests/test_models/dummycells.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-16T09:08:55,361 creating build/bdist.linux-armv7l/wheel/bluepyemodel 2023-10-16T09:08:55,363 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-16T09:08:55,364 copying build/lib/bluepyemodel/export_emodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-16T09:08:55,366 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-16T09:08:55,367 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-16T09:08:55,369 copying build/lib/bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-16T09:08:55,371 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-16T09:08:55,374 copying build/lib/bluepyemodel/export_emodel/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-16T09:08:55,375 copying build/lib/bluepyemodel/export_emodel/export_emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-16T09:08:55,378 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,379 copying build/lib/bluepyemodel/ecode/customfromfile.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,381 copying build/lib/bluepyemodel/ecode/comb.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,383 copying build/lib/bluepyemodel/ecode/stimulus.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,385 copying build/lib/bluepyemodel/ecode/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,386 copying build/lib/bluepyemodel/ecode/ramp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,388 copying build/lib/bluepyemodel/ecode/negcheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,390 copying build/lib/bluepyemodel/ecode/sinespec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,392 copying build/lib/bluepyemodel/ecode/probampanmda_ems.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,394 copying build/lib/bluepyemodel/ecode/subwhitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:55,396 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-16T09:08:55,397 copying build/lib/bluepyemodel/ecode/data/NoiseOU3.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-16T09:08:55,826 copying build/lib/bluepyemodel/ecode/data/WhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-16T09:08:56,262 copying build/lib/bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-16T09:08:56,301 copying build/lib/bluepyemodel/ecode/random_square_inputs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,304 copying build/lib/bluepyemodel/ecode/sahp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,306 copying build/lib/bluepyemodel/ecode/hyperdepol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,309 copying build/lib/bluepyemodel/ecode/dendrite.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,311 copying build/lib/bluepyemodel/ecode/noiseou3.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,313 copying build/lib/bluepyemodel/ecode/noise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,315 copying build/lib/bluepyemodel/ecode/apwaveform.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,317 copying build/lib/bluepyemodel/ecode/spikerec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,319 copying build/lib/bluepyemodel/ecode/poscheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,322 copying build/lib/bluepyemodel/ecode/dehyperpol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,324 copying build/lib/bluepyemodel/ecode/firepattern.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,327 copying build/lib/bluepyemodel/ecode/idrest.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,329 copying build/lib/bluepyemodel/ecode/whitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,331 copying build/lib/bluepyemodel/ecode/iv.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-16T09:08:56,334 creating build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-16T09:08:56,335 copying build/lib/bluepyemodel/validation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-16T09:08:56,337 copying build/lib/bluepyemodel/validation/validation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-16T09:08:56,339 copying build/lib/bluepyemodel/validation/validation_functions.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-16T09:08:56,341 copying build/lib/bluepyemodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel 2023-10-16T09:08:56,343 creating build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,345 copying build/lib/bluepyemodel/evaluation/evaluator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,348 copying build/lib/bluepyemodel/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,350 copying build/lib/bluepyemodel/evaluation/recordings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,352 copying build/lib/bluepyemodel/evaluation/modifiers.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,355 copying build/lib/bluepyemodel/evaluation/efeature_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,357 copying build/lib/bluepyemodel/evaluation/efel_feature_bpem.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,359 copying build/lib/bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,362 copying build/lib/bluepyemodel/evaluation/protocols.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,365 copying build/lib/bluepyemodel/evaluation/protocol_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,368 copying build/lib/bluepyemodel/evaluation/evaluation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-16T09:08:56,371 creating build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,372 copying build/lib/bluepyemodel/model/model.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,374 copying build/lib/bluepyemodel/model/model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,377 copying build/lib/bluepyemodel/model/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,379 copying build/lib/bluepyemodel/model/neuron_model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,381 copying build/lib/bluepyemodel/model/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,383 copying build/lib/bluepyemodel/model/parameter_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,385 copying build/lib/bluepyemodel/model/model_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,388 copying build/lib/bluepyemodel/model/mechanism_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,390 copying build/lib/bluepyemodel/model/distribution_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,392 copying build/lib/bluepyemodel/model/morphology_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-16T09:08:56,394 creating build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,396 copying build/lib/bluepyemodel/efeatures_extraction/targets_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,398 copying build/lib/bluepyemodel/efeatures_extraction/trace_file.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,400 copying build/lib/bluepyemodel/efeatures_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,402 copying build/lib/bluepyemodel/efeatures_extraction/auto_targets.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,404 copying build/lib/bluepyemodel/efeatures_extraction/targets_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,406 copying build/lib/bluepyemodel/efeatures_extraction/target.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,408 copying build/lib/bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-16T09:08:56,411 creating build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,413 copying build/lib/bluepyemodel/emodel_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,415 copying build/lib/bluepyemodel/emodel_pipeline/emodel_settings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,417 copying build/lib/bluepyemodel/emodel_pipeline/emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,419 copying build/lib/bluepyemodel/emodel_pipeline/emodel_script.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,421 copying build/lib/bluepyemodel/emodel_pipeline/plotting.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,424 copying build/lib/bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,426 copying build/lib/bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,428 copying build/lib/bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-16T09:08:56,430 creating build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-16T09:08:56,431 copying build/lib/bluepyemodel/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-16T09:08:56,433 copying build/lib/bluepyemodel/optimisation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-16T09:08:56,436 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,436 copying build/lib/bluepyemodel/tools/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,439 copying build/lib/bluepyemodel/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,440 copying build/lib/bluepyemodel/tools/mechanisms.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,442 copying build/lib/bluepyemodel/tools/search_pdfs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,444 copying build/lib/bluepyemodel/tools/morphology.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,446 copying build/lib/bluepyemodel/tools/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-16T09:08:56,448 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-16T09:08:56,449 copying build/lib/bluepyemodel/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-16T09:08:56,451 copying build/lib/bluepyemodel/tasks/luigi_custom.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-16T09:08:56,453 copying build/lib/bluepyemodel/tasks/luigi_tools.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-16T09:08:56,455 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-16T09:08:56,456 copying build/lib/bluepyemodel/tasks/emodel_creation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-16T09:08:56,458 copying build/lib/bluepyemodel/tasks/emodel_creation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-16T09:08:56,461 copying build/lib/bluepyemodel/tasks/config.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-16T09:08:56,463 creating build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-16T09:08:56,464 copying build/lib/bluepyemodel/access_point/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-16T09:08:56,467 copying build/lib/bluepyemodel/access_point/access_point.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-16T09:08:56,469 copying build/lib/bluepyemodel/access_point/local.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-16T09:08:56,472 running install_egg_info 2023-10-16T09:08:56,499 Copying bluepyemodel.egg-info to build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.46-py3.11.egg-info 2023-10-16T09:08:56,509 running install_scripts 2023-10-16T09:08:56,541 creating build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.46.dist-info/WHEEL 2023-10-16T09:08:56,543 creating '/tmp/pip-wheel-5uu1tr6u/bluepyemodel-0.0.46-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-16T09:08:56,546 adding 'bluepyemodel/__init__.py' 2023-10-16T09:08:56,548 adding 'bluepyemodel/access_point/__init__.py' 2023-10-16T09:08:56,550 adding 'bluepyemodel/access_point/access_point.py' 2023-10-16T09:08:56,554 adding 'bluepyemodel/access_point/local.py' 2023-10-16T09:08:56,556 adding 'bluepyemodel/ecode/__init__.py' 2023-10-16T09:08:56,558 adding 'bluepyemodel/ecode/apwaveform.py' 2023-10-16T09:08:56,559 adding 'bluepyemodel/ecode/comb.py' 2023-10-16T09:08:56,561 adding 'bluepyemodel/ecode/customfromfile.py' 2023-10-16T09:08:56,562 adding 'bluepyemodel/ecode/dehyperpol.py' 2023-10-16T09:08:56,564 adding 'bluepyemodel/ecode/dendrite.py' 2023-10-16T09:08:56,565 adding 'bluepyemodel/ecode/firepattern.py' 2023-10-16T09:08:56,567 adding 'bluepyemodel/ecode/hyperdepol.py' 2023-10-16T09:08:56,568 adding 'bluepyemodel/ecode/idrest.py' 2023-10-16T09:08:56,569 adding 'bluepyemodel/ecode/iv.py' 2023-10-16T09:08:56,571 adding 'bluepyemodel/ecode/negcheops.py' 2023-10-16T09:08:56,572 adding 'bluepyemodel/ecode/noise.py' 2023-10-16T09:08:56,574 adding 'bluepyemodel/ecode/noiseou3.py' 2023-10-16T09:08:56,575 adding 'bluepyemodel/ecode/poscheops.py' 2023-10-16T09:08:56,577 adding 'bluepyemodel/ecode/probampanmda_ems.py' 2023-10-16T09:08:56,578 adding 'bluepyemodel/ecode/ramp.py' 2023-10-16T09:08:56,580 adding 'bluepyemodel/ecode/random_square_inputs.py' 2023-10-16T09:08:56,581 adding 'bluepyemodel/ecode/sahp.py' 2023-10-16T09:08:56,582 adding 'bluepyemodel/ecode/sinespec.py' 2023-10-16T09:08:56,584 adding 'bluepyemodel/ecode/spikerec.py' 2023-10-16T09:08:56,585 adding 'bluepyemodel/ecode/stimulus.py' 2023-10-16T09:08:56,587 adding 'bluepyemodel/ecode/subwhitenoise.py' 2023-10-16T09:08:56,588 adding 'bluepyemodel/ecode/whitenoise.py' 2023-10-16T09:08:58,998 adding 'bluepyemodel/ecode/data/NoiseOU3.txt' 2023-10-16T09:08:59,447 adding 'bluepyemodel/ecode/data/SubWhiteNoise.txt' 2023-10-16T09:09:01,862 adding 'bluepyemodel/ecode/data/WhiteNoise.txt' 2023-10-16T09:09:02,107 adding 'bluepyemodel/efeatures_extraction/__init__.py' 2023-10-16T09:09:02,109 adding 'bluepyemodel/efeatures_extraction/auto_targets.py' 2023-10-16T09:09:02,110 adding 'bluepyemodel/efeatures_extraction/efeatures_extraction.py' 2023-10-16T09:09:02,112 adding 'bluepyemodel/efeatures_extraction/target.py' 2023-10-16T09:09:02,114 adding 'bluepyemodel/efeatures_extraction/targets_configuration.py' 2023-10-16T09:09:02,115 adding 'bluepyemodel/efeatures_extraction/targets_configurator.py' 2023-10-16T09:09:02,117 adding 'bluepyemodel/efeatures_extraction/trace_file.py' 2023-10-16T09:09:02,118 adding 'bluepyemodel/emodel_pipeline/__init__.py' 2023-10-16T09:09:02,120 adding 'bluepyemodel/emodel_pipeline/emodel.py' 2023-10-16T09:09:02,122 adding 'bluepyemodel/emodel_pipeline/emodel_metadata.py' 2023-10-16T09:09:02,127 adding 'bluepyemodel/emodel_pipeline/emodel_pipeline.py' 2023-10-16T09:09:02,129 adding 'bluepyemodel/emodel_pipeline/emodel_script.py' 2023-10-16T09:09:02,131 adding 'bluepyemodel/emodel_pipeline/emodel_settings.py' 2023-10-16T09:09:02,133 adding 'bluepyemodel/emodel_pipeline/emodel_workflow.py' 2023-10-16T09:09:02,138 adding 'bluepyemodel/emodel_pipeline/plotting.py' 2023-10-16T09:09:02,140 adding 'bluepyemodel/evaluation/__init__.py' 2023-10-16T09:09:02,141 adding 'bluepyemodel/evaluation/efeature_configuration.py' 2023-10-16T09:09:02,143 adding 'bluepyemodel/evaluation/efel_feature_bpem.py' 2023-10-16T09:09:02,145 adding 'bluepyemodel/evaluation/evaluation.py' 2023-10-16T09:09:02,148 adding 'bluepyemodel/evaluation/evaluator.py' 2023-10-16T09:09:02,152 adding 'bluepyemodel/evaluation/fitness_calculator_configuration.py' 2023-10-16T09:09:02,154 adding 'bluepyemodel/evaluation/modifiers.py' 2023-10-16T09:09:02,156 adding 'bluepyemodel/evaluation/protocol_configuration.py' 2023-10-16T09:09:02,159 adding 'bluepyemodel/evaluation/protocols.py' 2023-10-16T09:09:02,160 adding 'bluepyemodel/evaluation/recordings.py' 2023-10-16T09:09:02,162 adding 'bluepyemodel/export_emodel/__init__.py' 2023-10-16T09:09:02,164 adding 'bluepyemodel/export_emodel/export_emodel.py' 2023-10-16T09:09:02,165 adding 'bluepyemodel/export_emodel/utils.py' 2023-10-16T09:09:02,167 adding 'bluepyemodel/export_emodel/templates/cell_template.jinja2' 2023-10-16T09:09:02,169 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2' 2023-10-16T09:09:02,171 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2' 2023-10-16T09:09:02,172 adding 'bluepyemodel/model/__init__.py' 2023-10-16T09:09:02,174 adding 'bluepyemodel/model/distribution_configuration.py' 2023-10-16T09:09:02,175 adding 'bluepyemodel/model/mechanism_configuration.py' 2023-10-16T09:09:02,177 adding 'bluepyemodel/model/model.py' 2023-10-16T09:09:02,178 adding 'bluepyemodel/model/model_configuration.py' 2023-10-16T09:09:02,180 adding 'bluepyemodel/model/model_configurator.py' 2023-10-16T09:09:02,181 adding 'bluepyemodel/model/morphology_configuration.py' 2023-10-16T09:09:02,184 adding 'bluepyemodel/model/neuron_model_configuration.py' 2023-10-16T09:09:02,186 adding 'bluepyemodel/model/parameter_configuration.py' 2023-10-16T09:09:02,187 adding 'bluepyemodel/model/utils.py' 2023-10-16T09:09:02,189 adding 'bluepyemodel/optimisation/__init__.py' 2023-10-16T09:09:02,191 adding 'bluepyemodel/optimisation/optimisation.py' 2023-10-16T09:09:02,192 adding 'bluepyemodel/tasks/__init__.py' 2023-10-16T09:09:02,194 adding 'bluepyemodel/tasks/config.py' 2023-10-16T09:09:02,195 adding 'bluepyemodel/tasks/luigi_custom.py' 2023-10-16T09:09:02,197 adding 'bluepyemodel/tasks/luigi_tools.py' 2023-10-16T09:09:02,198 adding 'bluepyemodel/tasks/emodel_creation/__init__.py' 2023-10-16T09:09:02,202 adding 'bluepyemodel/tasks/emodel_creation/optimisation.py' 2023-10-16T09:09:02,204 adding 'bluepyemodel/tools/__init__.py' 2023-10-16T09:09:02,206 adding 'bluepyemodel/tools/mechanisms.py' 2023-10-16T09:09:02,207 adding 'bluepyemodel/tools/morphology.py' 2023-10-16T09:09:02,208 adding 'bluepyemodel/tools/multiprocessing.py' 2023-10-16T09:09:02,210 adding 'bluepyemodel/tools/search_pdfs.py' 2023-10-16T09:09:02,211 adding 'bluepyemodel/tools/utils.py' 2023-10-16T09:09:02,213 adding 'bluepyemodel/validation/__init__.py' 2023-10-16T09:09:02,215 adding 'bluepyemodel/validation/validation.py' 2023-10-16T09:09:02,216 adding 'bluepyemodel/validation/validation_functions.py' 2023-10-16T09:09:02,219 adding 'tests/__init__.py' 2023-10-16T09:09:02,221 adding 'tests/functional_tests/__init__.py' 2023-10-16T09:09:02,222 adding 'tests/functional_tests/test_protocols.py' 2023-10-16T09:09:02,223 adding 'tests/functional_tests/test_validation.py' 2023-10-16T09:09:02,227 adding 'tests/test_data/final.json' 2023-10-16T09:09:02,230 adding 'tests/test_data/final_tmp.json' 2023-10-16T09:09:02,235 adding 'tests/test_data/test_APWaveform_320.soma.v.csv' 2023-10-16T09:09:02,237 adding 'tests/test_data/test_IV_-100.soma.v.csv' 2023-10-16T09:09:02,239 adding 'tests/test_data/test_RMPProtocol.soma.v.csv' 2023-10-16T09:09:02,241 adding 'tests/test_data/test_RinProtocol.soma.v.csv' 2023-10-16T09:09:02,243 adding 'tests/test_data/test_SpikeRec_600.soma.v.csv' 2023-10-16T09:09:02,309 adding 'tests/test_data/test_Step_200.soma.v.csv' 2023-10-16T09:09:02,383 adding 'tests/test_data/test_Step_280.soma.v.csv' 2023-10-16T09:09:02,389 adding 'tests/test_data/test_bAP.ca_ais.cai.csv' 2023-10-16T09:09:02,393 adding 'tests/test_data/test_bAP.ca_prox_apic.cai.csv' 2023-10-16T09:09:02,396 adding 'tests/test_data/test_bAP.ca_prox_basal.cai.csv' 2023-10-16T09:09:02,400 adding 'tests/test_data/test_bAP.ca_soma.cai.csv' 2023-10-16T09:09:02,404 adding 'tests/test_data/test_bAP.dend1.v.csv' 2023-10-16T09:09:02,407 adding 'tests/test_data/test_bAP.dend2.v.csv' 2023-10-16T09:09:02,411 adding 'tests/test_data/test_bAP.soma.v.csv' 2023-10-16T09:09:02,413 adding 'tests/test_data/test_features.json' 2023-10-16T09:09:02,414 adding 'tests/test_data/test_mechanisms.json' 2023-10-16T09:09:02,415 adding 'tests/test_data/test_parameters.json' 2023-10-16T09:09:02,416 adding 'tests/test_data/test_protocols.json' 2023-10-16T09:09:02,417 adding 'tests/test_data/test_recipes.json' 2023-10-16T09:09:02,419 adding 'tests/test_data/config/config_dict.json' 2023-10-16T09:09:02,421 adding 'tests/test_data/config/features.json' 2023-10-16T09:09:02,423 adding 'tests/test_data/config/params.json' 2023-10-16T09:09:02,424 adding 'tests/test_data/config/params_restart.json' 2023-10-16T09:09:02,425 adding 'tests/test_data/config/protocols.json' 2023-10-16T09:09:02,427 adding 'tests/test_data/config/recipes.json' 2023-10-16T09:09:02,428 adding 'tests/test_data/config/recipes_restart.json' 2023-10-16T09:09:02,818 adding 'tests/test_data/ephys_data/C010600C1-MT-C1.nwb' 2023-10-16T09:09:02,862 adding 'tests/test_data/mechanisms/CaDynamics_DC0.mod' 2023-10-16T09:09:02,863 adding 'tests/test_data/mechanisms/Ca_HVA2.mod' 2023-10-16T09:09:02,865 adding 'tests/test_data/mechanisms/Ca_LVAst.mod' 2023-10-16T09:09:02,866 adding 'tests/test_data/mechanisms/Ih.mod' 2023-10-16T09:09:02,867 adding 'tests/test_data/mechanisms/K_Pst.mod' 2023-10-16T09:09:02,868 adding 'tests/test_data/mechanisms/K_Tst.mod' 2023-10-16T09:09:02,870 adding 'tests/test_data/mechanisms/NaTg.mod' 2023-10-16T09:09:02,871 adding 'tests/test_data/mechanisms/Nap_Et2.mod' 2023-10-16T09:09:02,872 adding 'tests/test_data/mechanisms/SK_E2.mod' 2023-10-16T09:09:02,874 adding 'tests/test_data/mechanisms/SKv3_1.mod' 2023-10-16T09:09:02,948 adding 'tests/test_data/morphology/C060114A5.asc' 2023-10-16T09:09:02,955 adding 'tests/test_models/__init__.py' 2023-10-16T09:09:02,956 adding 'tests/test_models/dummycells.py' 2023-10-16T09:09:02,958 adding 'tests/unit_tests/__init__.py' 2023-10-16T09:09:02,961 adding 'tests/unit_tests/test_ecodes.py' 2023-10-16T09:09:02,962 adding 'tests/unit_tests/test_emodel_pipeline.py' 2023-10-16T09:09:02,964 adding 'tests/unit_tests/test_emodelmetadata.py' 2023-10-16T09:09:02,965 adding 'tests/unit_tests/test_evaluator.py' 2023-10-16T09:09:02,967 adding 'tests/unit_tests/test_fitness_calculator_configuration.py' 2023-10-16T09:09:02,969 adding 'tests/unit_tests/test_local_access_point.py' 2023-10-16T09:09:02,970 adding 'tests/unit_tests/test_model.py' 2023-10-16T09:09:02,972 adding 'tests/unit_tests/test_model_parameters_configuration.py' 2023-10-16T09:09:02,973 adding 'tests/unit_tests/test_optimisation.py' 2023-10-16T09:09:02,975 adding 'tests/unit_tests/test_plotting.py' 2023-10-16T09:09:02,976 adding 'tests/unit_tests/test_targets_configuration.py' 2023-10-16T09:09:02,977 adding 'tests/unit_tests/test_tools.py' 2023-10-16T09:09:02,979 adding 'tests/unit_tests/test_validation_functions.py' 2023-10-16T09:09:02,980 adding 'bluepyemodel-0.0.46.dist-info/AUTHORS.txt' 2023-10-16T09:09:02,982 adding 'bluepyemodel-0.0.46.dist-info/COPYING' 2023-10-16T09:09:02,983 adding 'bluepyemodel-0.0.46.dist-info/LICENSE.txt' 2023-10-16T09:09:02,984 adding 'bluepyemodel-0.0.46.dist-info/METADATA' 2023-10-16T09:09:02,986 adding 'bluepyemodel-0.0.46.dist-info/WHEEL' 2023-10-16T09:09:02,987 adding 'bluepyemodel-0.0.46.dist-info/top_level.txt' 2023-10-16T09:09:02,990 adding 'bluepyemodel-0.0.46.dist-info/RECORD' 2023-10-16T09:09:03,155 removing build/bdist.linux-armv7l/wheel 2023-10-16T09:09:03,341 Building wheel for bluepyemodel (setup.py): finished with status 'done' 2023-10-16T09:09:03,488 Created wheel for bluepyemodel: filename=bluepyemodel-0.0.46-py3-none-any.whl size=12438789 sha256=beb82a665b679469ab45e096f6f0e2f7f188d7fce0afc9970f8c84cefc091e50 2023-10-16T09:09:03,489 Stored in directory: /tmp/pip-ephem-wheel-cache-utorhamv/wheels/10/01/4d/5c271eb8e21ae90fac4647378e4d1a28c93bd26680faa73653 2023-10-16T09:09:03,510 Successfully built bluepyemodel 2023-10-16T09:09:03,835 Removed build tracker: '/tmp/pip-build-tracker-8mgxsxsd'