2023-10-17T12:24:09,158 Created temporary directory: /tmp/pip-build-tracker-f7k6wh96 2023-10-17T12:24:09,160 Initialized build tracking at /tmp/pip-build-tracker-f7k6wh96 2023-10-17T12:24:09,160 Created build tracker: /tmp/pip-build-tracker-f7k6wh96 2023-10-17T12:24:09,161 Entered build tracker: /tmp/pip-build-tracker-f7k6wh96 2023-10-17T12:24:09,161 Created temporary directory: /tmp/pip-wheel-kkv6jycp 2023-10-17T12:24:09,166 Created temporary directory: /tmp/pip-ephem-wheel-cache-gf3ceogf 2023-10-17T12:24:09,190 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-17T12:24:09,195 2 location(s) to search for versions of whatshap: 2023-10-17T12:24:09,195 * https://pypi.org/simple/whatshap/ 2023-10-17T12:24:09,195 * https://www.piwheels.org/simple/whatshap/ 2023-10-17T12:24:09,195 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2023-10-17T12:24:09,196 Getting page https://pypi.org/simple/whatshap/ 2023-10-17T12:24:09,197 Found index url https://pypi.org/simple/ 2023-10-17T12:24:09,253 Fetched page https://pypi.org/simple/whatshap/ as application/vnd.pypi.simple.v1+json 2023-10-17T12:24:09,266 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.9 2023-10-17T12:24:09,267 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.10 2023-10-17T12:24:09,267 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.11 2023-10-17T12:24:09,267 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.12 2023-10-17T12:24:09,268 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.13 2023-10-17T12:24:09,268 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14 2023-10-17T12:24:09,268 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14.1 2023-10-17T12:24:09,268 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.15 2023-10-17T12:24:09,269 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.16 2023-10-17T12:24:09,269 Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.17 2023-10-17T12:24:09,269 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,269 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,270 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,270 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,270 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2023-10-17T12:24:09,271 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,271 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,271 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,272 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2023-10-17T12:24:09,272 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,272 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,272 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,273 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,273 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2023-10-17T12:24:09,273 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,274 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,274 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,274 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,274 Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2 2023-10-17T12:24:09,275 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,275 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,275 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,275 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,276 Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1 2023-10-17T12:24:09,276 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,276 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,277 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,277 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2023-10-17T12:24:09,277 Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3 2023-10-17T12:24:09,277 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/60/13/79e33b73a1b737584ad7e23c662a1b621c417813d0d8d81936fe0fe6608f/whatshap-1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,278 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/5c/c5/96fe2f18f74aee649db37a25a583d01219c01dfae7b33af7df36f5eee414/whatshap-1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,278 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/16/12/069f3e690d0af16ee52c63dcad13bfb35b8fbd9b03f56ea8682a8ed47bf6/whatshap-1.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,278 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/25/cf/3c12968b3e30141df2e518fe234bf38341db7474df5f890bd1c67664541f/whatshap-1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,279 Found link https://files.pythonhosted.org/packages/15/1e/1b29e356fc0b8a1fbbffe808c02a67eae8ebd922a78567aa5eb867b47070/whatshap-1.4.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.4 2023-10-17T12:24:09,279 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b6/5b/6e5b19bbab49bf45651cdf2eac3fe33a06d7959f65cfeba15dd08bae35e9/whatshap-1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,279 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/14/cf/91e8519226ffc8d3459582832b7d0cdf4fda7b4c324deecfadce3f55be55/whatshap-1.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,279 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/be/b4/0b3c2b6952cf006809cc1133e3c4c4b907458949bd5fa263114d26ea1670/whatshap-1.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,279 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/d3/37e4980f972894b48ee1ec36c98e6c3a530b37eed7721bb9010626e920b6/whatshap-1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,280 Found link https://files.pythonhosted.org/packages/2a/0a/71c5db75b44c886e492294328b41f970bfcfdef1c409e8ed3981a0ff519e/whatshap-1.5.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.5 2023-10-17T12:24:09,280 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/f8/76/4a671a933194f2ccbf2fc70513516312fae6054fbdbe69b250919082fa4c/whatshap-1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,280 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/86/778bbef5c06bdf48c738fdcd64c0a947398d78a168d1dfc949fc7665afa2/whatshap-1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,281 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/9d/60/749fe7dcbb28f21abc3190a171443c8f78d7a20a1a1dfac592966fb55dc4/whatshap-1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,281 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/cd/76/28f1ce30b1cf0a26eae2a508d057b78425595104780955b36e938ac7fcbe/whatshap-1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,281 Found link https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.6 2023-10-17T12:24:09,282 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/0a/21389d1b959cd489c4a0abf1343e9bcff61d45af7de9470ffa350d2eeb4d/whatshap-1.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,282 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e0/a3/dff518edaec7aa8efd2c7f1df8a494b7c4a0b49f7e6350c13228dee97351/whatshap-1.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,282 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c1/34/785976fd423c187d90e2be419af906a366c038a57503e2e4fb6599aca868/whatshap-1.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,282 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e1/81/8eaf7be1255b732643ce82307a72b015230b14842a15fc83b17bd264282d/whatshap-1.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,283 Found link https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.7 2023-10-17T12:24:09,283 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e2/4e/b4bf39415abe9944df3062b4e9c1c8ce901cae6ba1b3780d0a3c23c3e146/whatshap-2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,283 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/28/4c/c2a9597d07eadbcf8427ec843cc784f572603292ee9bbb339fd79cea5075/whatshap-2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,284 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/fa/f1/45172b5e64640fa04cdc3af57fc9848cf5d94d163dee6646a9aae67dfccb/whatshap-2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,284 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/48/aa/31e1727bb7f7f770df8192d2aa096d988d0a4345e3842c89c32badedd7a9/whatshap-2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,284 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8e/5d/9af0551ffaa026d33b612a1bdfccdeabc4b93fd0af6313b57671aea0648a/whatshap-2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,285 Found link https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 2.0 2023-10-17T12:24:09,285 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0d/b6/8e7ffd69dbe910122ab4823ab5c399e80bb1474249206a40845eaebdeb85/whatshap-2.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,285 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/67/e4/e8c62a755fb9f20ae55a1639128794f9e3ca161484bce2455344028282c2/whatshap-2.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,285 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/82/7a/9f1d53bb36f09d6991be51a8425b623a0819f91ebc7645e0fcba9ea08ccb/whatshap-2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,285 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b4/f5/aad6411b8a23cf9b48a79993f6e6168fb2e2c7925e12065000ae792b4253/whatshap-2.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,286 Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b0/c8/7b914424fca7cb6a7bad424096110166466b8d68c8091d70824a2ae97119/whatshap-2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7) 2023-10-17T12:24:09,286 Found link https://files.pythonhosted.org/packages/35/1a/d6fedb787eac8d616ec598f6a42cf2289bcc11dbbfdeae65afdf1dcb7bfc/whatshap-2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 2.1 2023-10-17T12:24:09,286 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/ 2023-10-17T12:24:09,287 Getting page https://www.piwheels.org/simple/whatshap/ 2023-10-17T12:24:09,288 Found index url https://www.piwheels.org/simple/ 2023-10-17T12:24:09,355 Fetched page https://www.piwheels.org/simple/whatshap/ as text/html 2023-10-17T12:24:09,368 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,368 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,369 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,369 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,369 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,369 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4) 2023-10-17T12:24:09,369 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv6l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,370 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv7l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,370 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv6l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,370 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv7l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,370 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv7l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,370 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv6l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,371 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,371 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,371 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv6l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,371 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv7l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,371 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv7l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,372 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv6l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,372 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv6l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,372 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv7l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,372 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv7l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,372 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv6l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,373 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,373 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,373 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,373 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,373 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,374 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,374 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv6l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,374 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv7l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,374 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv7l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,374 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv6l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,374 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv6l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,375 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,375 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv6l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,375 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv7l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,375 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv7l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,375 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv6l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,376 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv6l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,376 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,376 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,376 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,376 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,377 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,377 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,377 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,377 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,377 Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/) 2023-10-17T12:24:09,378 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/ 2023-10-17T12:24:09,378 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2023-10-17T12:24:09,398 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2023-10-17T12:24:09,416 Collecting whatshap==2.1 2023-10-17T12:24:09,418 Created temporary directory: /tmp/pip-unpack-pggt_nuf 2023-10-17T12:24:09,463 Downloading whatshap-2.1.tar.gz (5.4 MB) 2023-10-17T12:24:10,968 Added whatshap==2.1 from https://files.pythonhosted.org/packages/35/1a/d6fedb787eac8d616ec598f6a42cf2289bcc11dbbfdeae65afdf1dcb7bfc/whatshap-2.1.tar.gz to build tracker '/tmp/pip-build-tracker-f7k6wh96' 2023-10-17T12:24:10,975 Created temporary directory: /tmp/pip-build-env-o9p0cjbt 2023-10-17T12:24:10,987 Installing build dependencies: started 2023-10-17T12:24:10,988 Running command pip subprocess to install build dependencies 2023-10-17T12:24:12,175 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-10-17T12:24:12,722 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-17T12:24:14,247 Collecting setuptools>=63 2023-10-17T12:24:14,322 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-17T12:24:14,714 Collecting setuptools_scm[toml] 2023-10-17T12:24:14,734 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2023-10-17T12:24:16,423 Collecting cython~=0.29.20 2023-10-17T12:24:16,811 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.36-cp39-cp39-linux_armv7l.whl (4.9 MB) 2023-10-17T12:24:17,318 Collecting packaging>=20 (from setuptools_scm[toml]) 2023-10-17T12:24:17,337 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2023-10-17T12:24:17,464 Collecting typing-extensions (from setuptools_scm[toml]) 2023-10-17T12:24:17,481 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.8.0-py3-none-any.whl (31 kB) 2023-10-17T12:24:17,651 Collecting tomli>=1 (from setuptools_scm[toml]) 2023-10-17T12:24:17,668 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2023-10-17T12:24:19,454 Installing collected packages: typing-extensions, tomli, setuptools, packaging, cython, setuptools_scm 2023-10-17T12:24:24,525 Creating /tmp/pip-build-env-o9p0cjbt/overlay/bin 2023-10-17T12:24:24,528 changing mode of /tmp/pip-build-env-o9p0cjbt/overlay/bin/cygdb to 755 2023-10-17T12:24:24,530 changing mode of /tmp/pip-build-env-o9p0cjbt/overlay/bin/cython to 755 2023-10-17T12:24:24,533 changing mode of /tmp/pip-build-env-o9p0cjbt/overlay/bin/cythonize to 755 2023-10-17T12:24:24,749 Successfully installed cython-0.29.36 packaging-23.2 setuptools-68.2.2 setuptools_scm-8.0.4 tomli-2.0.1 typing-extensions-4.8.0 2023-10-17T12:24:24,950 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-17T12:24:24,951 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-17T12:24:25,312 Installing build dependencies: finished with status 'done' 2023-10-17T12:24:25,316 Getting requirements to build wheel: started 2023-10-17T12:24:25,317 Running command Getting requirements to build wheel 2023-10-17T12:24:34,085 warning: whatshap/priorityqueue.pyx:201:7: Unreachable code 2023-10-17T12:24:35,665 Compiling whatshap/core.pyx because it depends on /tmp/pip-build-env-o9p0cjbt/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-17T12:24:35,666 Compiling whatshap/polyphase/solver.pyx because it depends on /tmp/pip-build-env-o9p0cjbt/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-17T12:24:35,666 Compiling whatshap/readselect.pyx because it depends on /tmp/pip-build-env-o9p0cjbt/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-17T12:24:35,666 Compiling whatshap/priorityqueue.pyx because it depends on /tmp/pip-build-env-o9p0cjbt/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-10-17T12:24:35,666 Compiling whatshap/align.pyx because it depends on /tmp/pip-build-env-o9p0cjbt/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/string.pxd. 2023-10-17T12:24:35,666 [1/5] Cythonizing whatshap/align.pyx 2023-10-17T12:24:35,666 [2/5] Cythonizing whatshap/core.pyx 2023-10-17T12:24:35,666 [3/5] Cythonizing whatshap/polyphase/solver.pyx 2023-10-17T12:24:35,666 [4/5] Cythonizing whatshap/priorityqueue.pyx 2023-10-17T12:24:35,667 [5/5] Cythonizing whatshap/readselect.pyx 2023-10-17T12:24:36,061 running egg_info 2023-10-17T12:24:36,068 writing whatshap.egg-info/PKG-INFO 2023-10-17T12:24:36,075 writing dependency_links to whatshap.egg-info/dependency_links.txt 2023-10-17T12:24:36,078 writing entry points to whatshap.egg-info/entry_points.txt 2023-10-17T12:24:36,082 writing requirements to whatshap.egg-info/requires.txt 2023-10-17T12:24:36,083 writing top-level names to whatshap.egg-info/top_level.txt 2023-10-17T12:24:36,139 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-17T12:24:36,155 reading manifest file 'whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:36,168 reading manifest template 'MANIFEST.in' 2023-10-17T12:24:36,177 adding license file 'LICENSE' 2023-10-17T12:24:36,197 writing manifest file 'whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:37,240 Getting requirements to build wheel: finished with status 'done' 2023-10-17T12:24:37,254 Installing backend dependencies: started 2023-10-17T12:24:37,255 Running command pip subprocess to install backend dependencies 2023-10-17T12:24:38,495 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-10-17T12:24:39,065 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-17T12:24:39,416 Collecting wheel 2023-10-17T12:24:39,434 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-17T12:24:41,052 Installing collected packages: wheel 2023-10-17T12:24:41,285 Creating /tmp/pip-build-env-o9p0cjbt/normal/bin 2023-10-17T12:24:41,287 changing mode of /tmp/pip-build-env-o9p0cjbt/normal/bin/wheel to 755 2023-10-17T12:24:41,300 Successfully installed wheel-0.41.2 2023-10-17T12:24:41,495 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-17T12:24:41,495 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-17T12:24:41,713 Installing backend dependencies: finished with status 'done' 2023-10-17T12:24:41,716 Created temporary directory: /tmp/pip-modern-metadata-t4tdn3cw 2023-10-17T12:24:41,718 Preparing metadata (pyproject.toml): started 2023-10-17T12:24:41,719 Running command Preparing metadata (pyproject.toml) 2023-10-17T12:24:43,333 running dist_info 2023-10-17T12:24:43,340 creating /tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info 2023-10-17T12:24:43,346 writing /tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/PKG-INFO 2023-10-17T12:24:43,354 writing dependency_links to /tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/dependency_links.txt 2023-10-17T12:24:43,356 writing entry points to /tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/entry_points.txt 2023-10-17T12:24:43,359 writing requirements to /tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/requires.txt 2023-10-17T12:24:43,361 writing top-level names to /tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/top_level.txt 2023-10-17T12:24:43,362 writing manifest file '/tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:43,428 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-17T12:24:43,438 reading manifest file '/tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:43,441 reading manifest template 'MANIFEST.in' 2023-10-17T12:24:43,457 adding license file 'LICENSE' 2023-10-17T12:24:43,466 writing manifest file '/tmp/pip-modern-metadata-t4tdn3cw/whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:43,467 creating '/tmp/pip-modern-metadata-t4tdn3cw/whatshap-2.1.dist-info' 2023-10-17T12:24:43,665 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-17T12:24:43,672 Source in /tmp/pip-wheel-kkv6jycp/whatshap_443991f7cf084941a4286374cb55331a has version 2.1, which satisfies requirement whatshap==2.1 from https://files.pythonhosted.org/packages/35/1a/d6fedb787eac8d616ec598f6a42cf2289bcc11dbbfdeae65afdf1dcb7bfc/whatshap-2.1.tar.gz 2023-10-17T12:24:43,673 Removed whatshap==2.1 from https://files.pythonhosted.org/packages/35/1a/d6fedb787eac8d616ec598f6a42cf2289bcc11dbbfdeae65afdf1dcb7bfc/whatshap-2.1.tar.gz from build tracker '/tmp/pip-build-tracker-f7k6wh96' 2023-10-17T12:24:43,679 Created temporary directory: /tmp/pip-unpack-9pbtob1c 2023-10-17T12:24:43,680 Created temporary directory: /tmp/pip-unpack-5qdk7vc2 2023-10-17T12:24:43,718 Building wheels for collected packages: whatshap 2023-10-17T12:24:43,722 Created temporary directory: /tmp/pip-wheel-qjdb5j9t 2023-10-17T12:24:43,722 Destination directory: /tmp/pip-wheel-qjdb5j9t 2023-10-17T12:24:43,724 Building wheel for whatshap (pyproject.toml): started 2023-10-17T12:24:43,725 Running command Building wheel for whatshap (pyproject.toml) 2023-10-17T12:24:45,251 running bdist_wheel 2023-10-17T12:24:45,274 running build 2023-10-17T12:24:45,274 running build_py 2023-10-17T12:24:45,282 creating build 2023-10-17T12:24:45,282 creating build/lib.linux-armv7l-cpython-39 2023-10-17T12:24:45,283 creating build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,284 copying whatshap/utils.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,286 copying whatshap/timer.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,288 copying whatshap/testhelpers.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,290 copying whatshap/args.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,292 copying whatshap/graph.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,293 copying whatshap/variants.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,296 copying whatshap/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,297 copying whatshap/_version.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,299 copying whatshap/bam.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,301 copying whatshap/verification.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,303 copying whatshap/pedigree.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,305 copying whatshap/vcf.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,308 copying whatshap/coverage.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,309 copying whatshap/__main__.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,311 copying whatshap/merge.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,313 copying whatshap/phred_scores.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,315 copying whatshap/variant.py -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,317 creating build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,318 copying whatshap/polyphase/plots.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,321 copying whatshap/polyphase/reorder.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,324 copying whatshap/polyphase/offspringscoring.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,326 copying whatshap/polyphase/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,328 copying whatshap/polyphase/clusterarrangement.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,329 copying whatshap/polyphase/threading.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,332 copying whatshap/polyphase/variantselection.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,334 copying whatshap/polyphase/algorithm.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,337 creating build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,337 copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,340 copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,342 copying whatshap/cli/compare.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,345 copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,347 copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,349 copying whatshap/cli/stats.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,352 copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,354 copying whatshap/cli/polyphasegenetic.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,356 copying whatshap/cli/phase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,359 copying whatshap/cli/learn.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,361 copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,362 copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,364 copying whatshap/cli/split.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli 2023-10-17T12:24:45,366 running egg_info 2023-10-17T12:24:45,372 writing whatshap.egg-info/PKG-INFO 2023-10-17T12:24:45,379 writing dependency_links to whatshap.egg-info/dependency_links.txt 2023-10-17T12:24:45,381 writing entry points to whatshap.egg-info/entry_points.txt 2023-10-17T12:24:45,384 writing requirements to whatshap.egg-info/requires.txt 2023-10-17T12:24:45,385 writing top-level names to whatshap.egg-info/top_level.txt 2023-10-17T12:24:45,424 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-17T12:24:45,433 reading manifest file 'whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:45,472 reading manifest template 'MANIFEST.in' 2023-10-17T12:24:45,481 adding license file 'LICENSE' 2023-10-17T12:24:45,500 writing manifest file 'whatshap.egg-info/SOURCES.txt' 2023-10-17T12:24:45,517 copying whatshap/.gitignore -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,519 copying whatshap/_variants.pyi -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,521 copying whatshap/_variants.pyx -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,523 copying whatshap/align.pyi -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,525 copying whatshap/align.pyx -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,527 copying whatshap/core.pxd -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,529 copying whatshap/core.pyi -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,531 copying whatshap/core.pyx -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,534 copying whatshap/cpp.pxd -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,536 copying whatshap/priorityqueue.pxd -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,538 copying whatshap/priorityqueue.pyi -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,540 copying whatshap/priorityqueue.pyx -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,542 copying whatshap/readselect.pyi -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,544 copying whatshap/readselect.pyx -> build/lib.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,547 copying whatshap/polyphase/solver.cpp -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,565 copying whatshap/polyphase/solver.pxd -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,567 copying whatshap/polyphase/solver.pyi -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,569 copying whatshap/polyphase/solver.pyx -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase 2023-10-17T12:24:45,574 running build_ext 2023-10-17T12:24:45,580 building 'whatshap.core' extension 2023-10-17T12:24:45,582 creating build/temp.linux-armv7l-cpython-39 2023-10-17T12:24:45,583 creating build/temp.linux-armv7l-cpython-39/src 2023-10-17T12:24:45,584 creating build/temp.linux-armv7l-cpython-39/src/hapchat 2023-10-17T12:24:45,585 creating build/temp.linux-armv7l-cpython-39/whatshap 2023-10-17T12:24:45,586 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:24:47,236 In file included from /usr/include/c++/10/cassert:44, 2023-10-17T12:24:47,236 from src/backwardcolumniterator.cpp:1: 2023-10-17T12:24:47,236 src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’: 2023-10-17T12:24:47,236 src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-17T12:24:47,237 121 | assert(k < positions->size()); 2023-10-17T12:24:47,237 | ~~^~~~~~~~~~~~~~~~~~~ 2023-10-17T12:24:47,237 src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:24:47,237 140 | assert(active_entry < read->getVariantCount()); 2023-10-17T12:24:47,237 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:24:48,770 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/binomial.cpp -o build/temp.linux-armv7l-cpython-39/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:24:49,067 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/caller.cpp -o build/temp.linux-armv7l-cpython-39/src/caller.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:24:50,851 src/caller.cpp: In member function ‘void Caller::enumerate_kmers(int, std::string&, int, std::vector >&)’: 2023-10-17T12:24:50,851 src/caller.cpp:258:13: warning: unused variable ‘BAM_CPAD’ [-Wunused-variable] 2023-10-17T12:24:50,851 258 | int BAM_CPAD = 6 ; // P 2023-10-17T12:24:50,851 | ^~~~~~~~ 2023-10-17T12:24:50,852 src/caller.cpp:261:13: warning: unused variable ‘BAM_CBACK’ [-Wunused-variable] 2023-10-17T12:24:50,852 261 | int BAM_CBACK = 9 ; // B 2023-10-17T12:24:50,852 | ^~~~~~~~~ 2023-10-17T12:24:55,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-cpython-39/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:24:56,960 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2023-10-17T12:24:56,961 src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-17T12:24:56,961 90 | for(int j=0; j< parent->read_ids.size(); ++j) { 2023-10-17T12:24:56,961 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:24:56,962 src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:24:56,962 92 | if(m != -1) { 2023-10-17T12:24:56,962 | ~~^~~~~ 2023-10-17T12:24:56,962 src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable] 2023-10-17T12:24:56,963 89 | unsigned int s = 1; 2023-10-17T12:24:56,963 | ^ 2023-10-17T12:24:57,237 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-cpython-39/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:24:58,295 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2023-10-17T12:24:58,295 src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-17T12:24:58,295 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-17T12:24:58,296 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-17T12:24:58,298 71 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-17T12:24:58,299 71 | while ((iread_ids.size()) && (j > ColumnIterator::get_next()’: 2023-10-17T12:25:00,321 src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:25:00,321 105 | assert(list_it->active_entry < read->getVariantCount()); 2023-10-17T12:25:00,321 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:00,339 src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’: 2023-10-17T12:25:00,339 src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:25:00,339 161 | assert(active_entry < read->getVariantCount()); 2023-10-17T12:25:00,339 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:01,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/entry.cpp -o build/temp.linux-armv7l-cpython-39/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:02,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotype.cpp -o build/temp.linux-armv7l-cpython-39/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:05,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:07,744 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:08,859 src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’: 2023-10-17T12:25:08,859 src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:25:08,860 55 | if (i == best_index) continue; 2023-10-17T12:25:08,860 | ~~^~~~~~~~~~~~~ 2023-10-17T12:25:09,315 In file included from /usr/include/c++/10/vector:72, 2023-10-17T12:25:09,315 from src/genotypedistribution.h:4, 2023-10-17T12:25:09,315 from src/genotypedistribution.cpp:5: 2023-10-17T12:25:09,315 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-10-17T12:25:09,315 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-17T12:25:09,315 426 | vector<_Tp, _Alloc>:: 2023-10-17T12:25:09,316 | ^~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:09,349 In file included from /usr/include/c++/10/vector:67, 2023-10-17T12:25:09,349 from src/genotypedistribution.h:4, 2023-10-17T12:25:09,349 from src/genotypedistribution.cpp:5: 2023-10-17T12:25:09,349 /usr/include/c++/10/bits/stl_vector.h: In constructor ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’: 2023-10-17T12:25:09,350 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-17T12:25:09,350 1198 | _M_realloc_insert(end(), __x); 2023-10-17T12:25:09,350 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-17T12:25:09,350 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-17T12:25:09,350 1198 | _M_realloc_insert(end(), __x); 2023-10-17T12:25:09,350 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-17T12:25:09,350 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-17T12:25:09,351 1198 | _M_realloc_insert(end(), __x); 2023-10-17T12:25:09,351 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-17T12:25:09,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:11,540 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’: 2023-10-17T12:25:11,540 src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable] 2023-10-17T12:25:11,541 61 | size_t column_count = input_column_iterator.get_column_count(); 2023-10-17T12:25:11,541 | ^~~~~~~~~~~~ 2023-10-17T12:25:11,594 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’: 2023-10-17T12:25:11,594 src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable] 2023-10-17T12:25:11,594 91 | unsigned int transmission_configurations = pow(4, pedigree->triple_count()); 2023-10-17T12:25:11,594 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:11,597 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’: 2023-10-17T12:25:11,598 src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-17T12:25:11,598 152 | if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) { 2023-10-17T12:25:11,598 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-10-17T12:25:11,601 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’: 2023-10-17T12:25:11,601 src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable] 2023-10-17T12:25:11,601 178 | size_t k = (size_t)sqrt(input_column_iterator.get_column_count()); 2023-10-17T12:25:11,602 | ^ 2023-10-17T12:25:15,270 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotyper.cpp -o build/temp.linux-armv7l-cpython-39/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:17,368 In file included from /usr/include/c++/10/vector:72, 2023-10-17T12:25:17,368 from src/columniterator.h:4, 2023-10-17T12:25:17,368 from src/genotyper.cpp:6: 2023-10-17T12:25:17,368 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator]’: 2023-10-17T12:25:17,369 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-17T12:25:17,369 426 | vector<_Tp, _Alloc>:: 2023-10-17T12:25:17,369 | ^~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:17,561 In file included from /usr/include/c++/10/vector:67, 2023-10-17T12:25:17,561 from src/columniterator.h:4, 2023-10-17T12:25:17,562 from src/genotyper.cpp:6: 2023-10-17T12:25:17,562 /usr/include/c++/10/bits/stl_vector.h: In function ‘void compute_genotypes(const ReadSet&, std::vector*, std::vector*, std::vector*)’: 2023-10-17T12:25:17,562 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-17T12:25:17,562 1198 | _M_realloc_insert(end(), __x); 2023-10-17T12:25:17,562 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-17T12:25:17,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/graycodes.cpp -o build/temp.linux-armv7l-cpython-39/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:18,900 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:22,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:23,954 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:26,437 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:28,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:30,670 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2023-10-17T12:25:30,670 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2023-10-17T12:25:30,670 145 | Counter counter_columns; 2023-10-17T12:25:30,670 | ^~~~~~~~~~~~~~~ 2023-10-17T12:25:30,680 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2023-10-17T12:25:30,680 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,680 208 | return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2023-10-17T12:25:30,680 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:30,815 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2023-10-17T12:25:30,815 src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable] 2023-10-17T12:25:30,815 939 | int old_k = k_j[input_pointer]; 2023-10-17T12:25:30,816 | ^~~~~ 2023-10-17T12:25:30,833 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2023-10-17T12:25:30,833 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,833 1114 | (colJ[j].get_read_id() != -1) && 2023-10-17T12:25:30,834 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:30,834 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,834 1115 | (colQ[i].get_read_id() != -1)) { 2023-10-17T12:25:30,834 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:30,835 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2023-10-17T12:25:30,836 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,836 1159 | while(cov < column.size() && column[cov].get_read_id() != -1) { 2023-10-17T12:25:30,836 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:30,840 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2023-10-17T12:25:30,841 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,841 1294 | (colJ[j].get_read_id() != -1) && 2023-10-17T12:25:30,841 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:30,841 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,841 1295 | (colQ[i].get_read_id() != -1)) { 2023-10-17T12:25:30,842 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:30,844 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2023-10-17T12:25:30,844 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:30,844 1350 | if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2023-10-17T12:25:30,844 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:25:31,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/indexset.cpp -o build/temp.linux-armv7l-cpython-39/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:33,349 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/multinomial.cpp -o build/temp.linux-armv7l-cpython-39/src/multinomial.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:34,500 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigree.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:35,824 In file included from /usr/include/c++/10/cassert:44, 2023-10-17T12:25:35,824 from src/pedigree.cpp:4: 2023-10-17T12:25:35,824 src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector, std::vector)’: 2023-10-17T12:25:35,825 src/pedigree.cpp:32:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:25:35,825 32 | assert(genotypes.size() == variant_count); 2023-10-17T12:25:35,825 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-10-17T12:25:35,825 src/pedigree.cpp:33:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:25:35,825 33 | assert(genotype_likelihoods.size() == variant_count); 2023-10-17T12:25:35,825 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2023-10-17T12:25:35,834 src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’: 2023-10-17T12:25:35,834 src/pedigree.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2023-10-17T12:25:35,834 70 | assert(variant_index < variant_count); 2023-10-17T12:25:35,835 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-17T12:25:35,835 src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’: 2023-10-17T12:25:35,835 src/pedigree.cpp:81:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2023-10-17T12:25:35,835 81 | assert(variant_index < variant_count); 2023-10-17T12:25:35,835 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-17T12:25:35,847 src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’: 2023-10-17T12:25:35,847 src/pedigree.cpp:112:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2023-10-17T12:25:35,847 112 | for (size_t j=0; j&, size_t, const std::vector&, const Pedigree*, const PedigreePartitions&, bool)’: 2023-10-17T12:25:39,686 src/pedigreecolumncostcomputer.cpp:25:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:25:39,687 25 | for (unsigned int i = 0; i < (1< PedigreeColumnCostComputer::get_alleles()’: 2023-10-17T12:25:39,722 src/pedigreecolumncostcomputer.cpp:119:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable] 2023-10-17T12:25:39,722 119 | unsigned int second_best_cost = numeric_limits < unsigned int >::max(); 2023-10-17T12:25:39,722 | ^~~~~~~~~~~~~~~~ 2023-10-17T12:25:40,809 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:46,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:48,681 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-cpython-39/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:50,196 In file included from /usr/include/c++/10/vector:72, 2023-10-17T12:25:50,197 from src/genotype.h:5, 2023-10-17T12:25:50,197 from src/phredgenotypelikelihoods.h:5, 2023-10-17T12:25:50,197 from src/phredgenotypelikelihoods.cpp:4: 2023-10-17T12:25:50,197 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator]’: 2023-10-17T12:25:50,197 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-17T12:25:50,197 426 | vector<_Tp, _Alloc>:: 2023-10-17T12:25:50,197 | ^~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:50,229 /usr/include/c++/10/bits/vector.tcc: In member function ‘void PhredGenotypeLikelihoods::get_genotypes(std::vector&) const’: 2023-10-17T12:25:50,229 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-17T12:25:50,229 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-17T12:25:50,229 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:25:50,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/read.cpp -o build/temp.linux-armv7l-cpython-39/src/read.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:53,269 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/readset.cpp -o build/temp.linux-armv7l-cpython-39/src/readset.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:25:57,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/transitionprobabilitycomputer.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:26:00,101 In file included from /usr/include/c++/10/vector:72, 2023-10-17T12:26:00,101 from src/vector2d.h:5, 2023-10-17T12:26:00,101 from src/transitionprobabilitycomputer.h:5, 2023-10-17T12:26:00,101 from src/transitionprobabilitycomputer.cpp:1: 2023-10-17T12:26:00,102 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: 2023-10-17T12:26:00,102 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2023-10-17T12:26:00,102 426 | vector<_Tp, _Alloc>:: 2023-10-17T12:26:00,102 | ^~~~~~~~~~~~~~~~~~~ 2023-10-17T12:26:00,144 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator]’: 2023-10-17T12:26:00,145 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-10-17T12:26:00,621 /usr/include/c++/10/bits/vector.tcc: In constructor ‘TransitionProbabilityComputer::TransitionProbabilityComputer(size_t, unsigned int, const Pedigree*, const std::vector&)’: 2023-10-17T12:26:00,621 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2023-10-17T12:26:00,621 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-10-17T12:26:00,621 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-17T12:26:00,623 In file included from /usr/include/c++/10/vector:67, 2023-10-17T12:26:00,623 from src/vector2d.h:5, 2023-10-17T12:26:00,624 from src/transitionprobabilitycomputer.h:5, 2023-10-17T12:26:00,624 from src/transitionprobabilitycomputer.cpp:1: 2023-10-17T12:26:00,624 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-10-17T12:26:00,624 1198 | _M_realloc_insert(end(), __x); 2023-10-17T12:26:00,624 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-10-17T12:26:01,361 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c whatshap/core.cpp -o build/temp.linux-armv7l-cpython-39/whatshap/core.o -std=c++11 -Werror=return-type -Werror=narrowing 2023-10-17T12:26:04,013 In file included from whatshap/core.cpp:851: 2023-10-17T12:26:04,013 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’: 2023-10-17T12:26:04,013 src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable] 2023-10-17T12:26:04,013 145 | Counter counter_columns; 2023-10-17T12:26:04,014 | ^~~~~~~~~~~~~~~ 2023-10-17T12:26:04,023 src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector >&, const Pointer&, const bool&)’: 2023-10-17T12:26:04,023 src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,023 208 | return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1))); 2023-10-17T12:26:04,023 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,162 In file included from whatshap/core.cpp:851: 2023-10-17T12:26:04,162 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector&, std::vector&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’: 2023-10-17T12:26:04,162 src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable] 2023-10-17T12:26:04,163 939 | int old_k = k_j[input_pointer]; 2023-10-17T12:26:04,163 | ^~~~~ 2023-10-17T12:26:04,180 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector >&, std::vector >&, std::vector >&, std::vector&, const bool&)’: 2023-10-17T12:26:04,180 src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,180 1114 | (colJ[j].get_read_id() != -1) && 2023-10-17T12:26:04,181 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,181 src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,181 1115 | (colQ[i].get_read_id() != -1)) { 2023-10-17T12:26:04,181 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,183 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’: 2023-10-17T12:26:04,183 src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,183 1159 | while(cov < column.size() && column[cov].get_read_id() != -1) { 2023-10-17T12:26:04,183 | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,187 src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’: 2023-10-17T12:26:04,188 src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,188 1294 | (colJ[j].get_read_id() != -1) && 2023-10-17T12:26:04,188 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,188 src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,188 1295 | (colQ[i].get_read_id() != -1)) { 2023-10-17T12:26:04,188 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,191 src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector >&, std::vector&, std::vector&, std::vector&, const Pointer&, const Column&, std::vector&, const Counter&)’: 2023-10-17T12:26:04,191 src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-17T12:26:04,191 1350 | if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1) 2023-10-17T12:26:04,192 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ 2023-10-17T12:26:04,323 In file included from src/polyphase/haplothreader.h:5, 2023-10-17T12:26:04,323 from whatshap/core.cpp:857: 2023-10-17T12:26:04,323 src/polyphase/tuple.h: At global scope: 2023-10-17T12:26:04,323 src/polyphase/tuple.h:27:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,323 27 | 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2023-10-17T12:26:04,323 | ~~~~~^~~~~ 2023-10-17T12:26:04,324 src/polyphase/tuple.h:28:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,324 28 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-10-17T12:26:04,324 | ~~~~~^~~~~ 2023-10-17T12:26:04,324 src/polyphase/tuple.h:28:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,324 28 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-10-17T12:26:04,324 | ~~~~~^~~~~ 2023-10-17T12:26:04,324 src/polyphase/tuple.h:28:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,325 28 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-10-17T12:26:04,325 | ~~~~~^~~~~ 2023-10-17T12:26:04,325 src/polyphase/tuple.h:28:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,325 28 | 31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55}; 2023-10-17T12:26:04,325 | ~~~~~^~~~~ 2023-10-17T12:26:04,325 src/polyphase/tuple.h:27:50: error: right operand of shift expression ‘(31 << 35)’ is greater than or equal to the precision 32 of the left operand [-fpermissive] 2023-10-17T12:26:04,325 27 | 31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35, 2023-10-17T12:26:04,326 | ~~~~~^~~~~ 2023-10-17T12:26:04,358 In file included from whatshap/core.cpp:858: 2023-10-17T12:26:04,358 src/polyphase/switchflipcalculator.h:32:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,358 32 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-10-17T12:26:04,358 | ~~~~~^~~~~ 2023-10-17T12:26:04,359 src/polyphase/switchflipcalculator.h:32:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,359 32 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-10-17T12:26:04,359 | ~~~~~^~~~~ 2023-10-17T12:26:04,359 src/polyphase/switchflipcalculator.h:32:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,359 32 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-10-17T12:26:04,359 | ~~~~~^~~~~ 2023-10-17T12:26:04,359 src/polyphase/switchflipcalculator.h:32:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,360 32 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-10-17T12:26:04,360 | ~~~~~^~~~~ 2023-10-17T12:26:04,360 src/polyphase/switchflipcalculator.h:33:14: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,360 33 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-10-17T12:26:04,360 | ~~~~~^~~~~ 2023-10-17T12:26:04,360 src/polyphase/switchflipcalculator.h:33:26: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,360 33 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-10-17T12:26:04,361 | ~~~~~^~~~~ 2023-10-17T12:26:04,361 src/polyphase/switchflipcalculator.h:33:38: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,361 33 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-10-17T12:26:04,361 | ~~~~~^~~~~ 2023-10-17T12:26:04,361 src/polyphase/switchflipcalculator.h:33:50: warning: left shift count >= width of type [-Wshift-count-overflow] 2023-10-17T12:26:04,361 33 | 15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60 2023-10-17T12:26:04,361 | ~~~~~^~~~~ 2023-10-17T12:26:04,362 src/polyphase/switchflipcalculator.h:32:14: error: right operand of shift expression ‘(15 << 32)’ is greater than or equal to the precision 32 of the left operand [-fpermissive] 2023-10-17T12:26:04,362 32 | 15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44, 2023-10-17T12:26:04,362 | ~~~~~^~~~~ 2023-10-17T12:26:04,868 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_15PedigreeDPTable_4get_super_reads(__pyx_obj_8whatshap_4core_PedigreeDPTable*)’: 2023-10-17T12:26:04,869 whatshap/core.cpp:9028:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-10-17T12:26:04,869 9028 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2023-10-17T12:26:04,869 | ~~~~~~~~~~^~~~~~~~~~~ 2023-10-17T12:26:05,126 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_11HapChatCore_6get_super_reads(__pyx_obj_8whatshap_4core_HapChatCore*)’: 2023-10-17T12:26:05,126 whatshap/core.cpp:15261:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-17T12:26:05,127 15261 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { 2023-10-17T12:26:05,127 | ~~~~~~~~~~^~~~~~~~~~~ 2023-10-17T12:26:07,323 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-10-17T12:26:07,480 ERROR: [present-rich] Building wheel for whatshap (pyproject.toml) exited with 1 2023-10-17T12:26:07,498 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpdghck_l9[/] 2023-10-17T12:26:07,498 [bold magenta]cwd[/]: /tmp/pip-wheel-kkv6jycp/whatshap_443991f7cf084941a4286374cb55331a 2023-10-17T12:26:07,498 Building wheel for whatshap (pyproject.toml): finished with status 'error' 2023-10-17T12:26:07,500 ERROR: Failed building wheel for whatshap 2023-10-17T12:26:07,503 Failed to build whatshap 2023-10-17T12:26:07,504 ERROR: Failed to build one or more wheels 2023-10-17T12:26:07,505 Exception information: 2023-10-17T12:26:07,505 Traceback (most recent call last): 2023-10-17T12:26:07,505 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-10-17T12:26:07,505 status = run_func(*args) 2023-10-17T12:26:07,505 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-10-17T12:26:07,505 return func(self, options, args) 2023-10-17T12:26:07,505 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-10-17T12:26:07,505 raise CommandError("Failed to build one or more wheels") 2023-10-17T12:26:07,505 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-10-17T12:26:07,509 Removed build tracker: '/tmp/pip-build-tracker-f7k6wh96'