2023-10-17T17:26:13,400 Created temporary directory: /tmp/pip-build-tracker-hhn2c55e
2023-10-17T17:26:13,401 Initialized build tracking at /tmp/pip-build-tracker-hhn2c55e
2023-10-17T17:26:13,401 Created build tracker: /tmp/pip-build-tracker-hhn2c55e
2023-10-17T17:26:13,402 Entered build tracker: /tmp/pip-build-tracker-hhn2c55e
2023-10-17T17:26:13,403 Created temporary directory: /tmp/pip-wheel-8nhi07ip
2023-10-17T17:26:13,406 Created temporary directory: /tmp/pip-ephem-wheel-cache-aar71pbl
2023-10-17T17:26:13,428 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T17:26:13,431 2 location(s) to search for versions of moleculekit:
2023-10-17T17:26:13,431 * https://pypi.org/simple/moleculekit/
2023-10-17T17:26:13,431 * https://www.piwheels.org/simple/moleculekit/
2023-10-17T17:26:13,432 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-17T17:26:13,433 Getting page https://pypi.org/simple/moleculekit/
2023-10-17T17:26:13,435 Found index url https://pypi.org/simple/
2023-10-17T17:26:13,597 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-17T17:26:13,634   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,635   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-17T17:26:13,636   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,636   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-17T17:26:13,637   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,638   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-17T17:26:13,638   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,639   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-17T17:26:13,640   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,641   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-17T17:26:13,641   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,642   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-17T17:26:13,643   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,644   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-17T17:26:13,644   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,645   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-17T17:26:13,645   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,646   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-17T17:26:13,646   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,647   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-17T17:26:13,648   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,648   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-17T17:26:13,649   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,650   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-17T17:26:13,651   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,651   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-17T17:26:13,652   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,653   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-17T17:26:13,653   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,654   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-17T17:26:13,655   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,655   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-17T17:26:13,656   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,657   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-17T17:26:13,657   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,658   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-17T17:26:13,658   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,659   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-17T17:26:13,660   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,660   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-17T17:26:13,661   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,662   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-17T17:26:13,662   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,663   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-17T17:26:13,664   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,664   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-17T17:26:13,665   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,666   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-17T17:26:13,667   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,667   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-17T17:26:13,668   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,668   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-17T17:26:13,669   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,670   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-17T17:26:13,670   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,671   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-17T17:26:13,672   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,672   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-17T17:26:13,673   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,674   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-17T17:26:13,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,676   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-17T17:26:13,677   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T17:26:13,677   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-17T17:26:13,678   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-17T17:26:13,748   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
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2023-10-17T17:26:13,749   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
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2023-10-17T17:26:13,782   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
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2023-10-17T17:26:13,784   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-17T17:26:13,784   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-17T17:26:13,786   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-17T17:26:13,787   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-17T17:26:13,788   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-17T17:26:13,789   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-17T17:26:13,790   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-17T17:26:13,790   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-17T17:26:13,792   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-17T17:26:13,793   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-17T17:26:13,794   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-17T17:26:13,795   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-17T17:26:13,796   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-17T17:26:13,797   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-17T17:26:13,797   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-10-17T17:26:13,798   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-10-17T17:26:13,799   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-10-17T17:26:13,800   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-10-17T17:26:13,801 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-17T17:26:13,802 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-17T17:26:13,804 Found index url https://www.piwheels.org/simple/
2023-10-17T17:26:13,977 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-17T17:26:14,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,128   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,129   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,130   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,139   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,139   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,140   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,141   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,141   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,142   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,143   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,143   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,144   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,144   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,145   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,145   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,146   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,146   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,147   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,148   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,149   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,150   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,151   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,152   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,153   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,154   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,154   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,155   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,156   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,156   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,157   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,158   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,158   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,159   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,160   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,161   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,162   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,163   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,164   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,165   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,166   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,166   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,167   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,167   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,168   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,169   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,173   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T17:26:14,203   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T17:26:14,204 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-17T17:26:14,204 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-17T17:26:14,245 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-17T17:26:14,264 Collecting moleculekit==1.8.4
2023-10-17T17:26:14,266   Created temporary directory: /tmp/pip-unpack-a5icr60e
2023-10-17T17:26:14,486   Downloading moleculekit-1.8.4.tar.gz (6.2 MB)
2023-10-17T17:26:16,992   Added moleculekit==1.8.4 from https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz to build tracker '/tmp/pip-build-tracker-hhn2c55e'
2023-10-17T17:26:17,001   Created temporary directory: /tmp/pip-build-env-daak5mrf
2023-10-17T17:26:17,005   Installing build dependencies: started
2023-10-17T17:26:17,006   Running command pip subprocess to install build dependencies
2023-10-17T17:26:18,143   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-17T17:26:18,657   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T17:26:20,195   Collecting setuptools
2023-10-17T17:26:20,270     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-17T17:26:21,013     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-17T17:26:21,020     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-17T17:26:21,027     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-17T17:26:21,034     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-17T17:26:21,040     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-10-17T17:26:21,439   Collecting numpy>=1.18.5
2023-10-17T17:26:22,819     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.1-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-10-17T17:26:24,945   Collecting Cython>=0.29.21
2023-10-17T17:26:28,571     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.3-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-10-17T17:26:29,138   Collecting toml
2023-10-17T17:26:29,155     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-17T17:26:29,328   Collecting versioneer[toml]==0.28
2023-10-17T17:26:29,345     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-17T17:26:32,006   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-10-17T17:26:32,038     Creating /tmp/pip-build-env-daak5mrf/overlay/local/bin
2023-10-17T17:26:32,040     changing mode of /tmp/pip-build-env-daak5mrf/overlay/local/bin/versioneer to 755
2023-10-17T17:26:42,335     changing mode of /tmp/pip-build-env-daak5mrf/overlay/local/bin/f2py to 755
2023-10-17T17:26:49,773     changing mode of /tmp/pip-build-env-daak5mrf/overlay/local/bin/cygdb to 755
2023-10-17T17:26:49,775     changing mode of /tmp/pip-build-env-daak5mrf/overlay/local/bin/cython to 755
2023-10-17T17:26:49,777     changing mode of /tmp/pip-build-env-daak5mrf/overlay/local/bin/cythonize to 755
2023-10-17T17:26:49,823   Successfully installed Cython-3.0.3 numpy-1.26.1 setuptools-68.2.2 toml-0.10.2 versioneer-0.28

2023-10-17T17:26:50,090   [notice] A new release of pip is available: 23.2.1 -> 23.3
2023-10-17T17:26:50,091   [notice] To update, run: python3 -m pip install --upgrade pip
2023-10-17T17:26:50,502   Installing build dependencies: finished with status 'done'
2023-10-17T17:26:50,505   Getting requirements to build wheel: started
2023-10-17T17:26:50,506   Running command Getting requirements to build wheel
2023-10-17T17:27:28,930   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,931   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,931   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,932   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,932   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,933   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,933   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,934   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,935   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,936   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-10-17T17:27:28,936   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T17:27:28,937   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-17T17:27:28,937   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-17T17:27:28,938   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-17T17:27:28,938   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-17T17:27:28,939   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-17T17:27:28,939   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-17T17:27:28,940   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-17T17:27:28,940   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-17T17:27:28,941   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-17T17:27:28,942   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-17T17:27:28,942   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-17T17:27:29,210   running egg_info
2023-10-17T17:27:29,216   writing moleculekit.egg-info/PKG-INFO
2023-10-17T17:27:29,220   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-17T17:27:29,222   writing requirements to moleculekit.egg-info/requires.txt
2023-10-17T17:27:29,224   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-17T17:27:29,245   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,245   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,246   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,247   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,247   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,248   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,248   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,249   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,250   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,250   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,251   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,252   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,252   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,253   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,253   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,254   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,255   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,255   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,256   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,256   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,257   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,257   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,258   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,258   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,259   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,259   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,259   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,260   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,261   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,261   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,262   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,263   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,263   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,264   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,265   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,265   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,266   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,266   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,267   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,267   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,268   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,268   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,269   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,269   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,270   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,270   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,271   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,271   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,272   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,273   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,273   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,274   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,274   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,275   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,275   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:29,280   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:29,311   reading manifest template 'MANIFEST.in'
2023-10-17T17:27:29,527   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T17:27:29,528   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T17:27:29,529   no previously-included directories found matching 'package'
2023-10-17T17:27:29,530   adding license file 'LICENSE'
2023-10-17T17:27:29,544   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:30,863   Getting requirements to build wheel: finished with status 'done'
2023-10-17T17:27:30,877   Installing backend dependencies: started
2023-10-17T17:27:30,878   Running command pip subprocess to install backend dependencies
2023-10-17T17:27:32,317   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-10-17T17:27:32,861   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T17:27:33,374   Collecting wheel
2023-10-17T17:27:33,394     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-17T17:27:36,526   Installing collected packages: wheel
2023-10-17T17:27:36,753     Creating /tmp/pip-build-env-daak5mrf/normal/local/bin
2023-10-17T17:27:36,755     changing mode of /tmp/pip-build-env-daak5mrf/normal/local/bin/wheel to 755
2023-10-17T17:27:36,767   Successfully installed wheel-0.41.2

2023-10-17T17:27:37,033   [notice] A new release of pip is available: 23.2.1 -> 23.3
2023-10-17T17:27:37,034   [notice] To update, run: python3 -m pip install --upgrade pip
2023-10-17T17:27:37,261   Installing backend dependencies: finished with status 'done'
2023-10-17T17:27:37,263   Created temporary directory: /tmp/pip-modern-metadata-f0ghc66k
2023-10-17T17:27:37,265   Preparing metadata (pyproject.toml): started
2023-10-17T17:27:37,267   Running command Preparing metadata (pyproject.toml)
2023-10-17T17:27:39,769   running dist_info
2023-10-17T17:27:39,771   creating /tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info
2023-10-17T17:27:39,776   writing /tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/PKG-INFO
2023-10-17T17:27:39,780   writing dependency_links to /tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/dependency_links.txt
2023-10-17T17:27:39,782   writing requirements to /tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/requires.txt
2023-10-17T17:27:39,783   writing top-level names to /tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/top_level.txt
2023-10-17T17:27:39,784   writing manifest file '/tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:39,807   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,807   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,808   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,808   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,809   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,810   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,811   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,811   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,812   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,812   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,813   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,813   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,814   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,814   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-10-17T17:27:39,816   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,816   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,817   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,817   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,818   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,819   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,819   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,820   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,820   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,821   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,822   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,823   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,823   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,824   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,824   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,824   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,825   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,825   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,826   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,827   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,827   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,828   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,828   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,829   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,829   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,830   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,830   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,831   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,831   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,832   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,832   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,833   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,833   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,834   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,834   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,834   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,835   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,835   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,836   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,836   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:39,837   reading manifest file '/tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:39,837   reading manifest template 'MANIFEST.in'
2023-10-17T17:27:40,063   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T17:27:40,063   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T17:27:40,064   no previously-included directories found matching 'package'
2023-10-17T17:27:40,065   adding license file 'LICENSE'
2023-10-17T17:27:40,075   writing manifest file '/tmp/pip-modern-metadata-f0ghc66k/moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:40,083   creating '/tmp/pip-modern-metadata-f0ghc66k/moleculekit-1.8.4.dist-info'
2023-10-17T17:27:40,313   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-17T17:27:40,318   Source in /tmp/pip-wheel-8nhi07ip/moleculekit_b8f9d64534f04d9e975fdd3310388bc4 has version 1.8.4, which satisfies requirement moleculekit==1.8.4 from https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz
2023-10-17T17:27:40,319   Removed moleculekit==1.8.4 from https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz from build tracker '/tmp/pip-build-tracker-hhn2c55e'
2023-10-17T17:27:40,325 Created temporary directory: /tmp/pip-unpack-j7784ktj
2023-10-17T17:27:40,326 Created temporary directory: /tmp/pip-unpack-nti2ho3g
2023-10-17T17:27:40,333 Building wheels for collected packages: moleculekit
2023-10-17T17:27:40,337   Created temporary directory: /tmp/pip-wheel-1a8u1son
2023-10-17T17:27:40,338   Destination directory: /tmp/pip-wheel-1a8u1son
2023-10-17T17:27:40,340   Building wheel for moleculekit (pyproject.toml): started
2023-10-17T17:27:40,341   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-17T17:27:42,487   running bdist_wheel
2023-10-17T17:27:42,502   running build
2023-10-17T17:27:42,503   running build_py
2023-10-17T17:27:42,509   creating build
2023-10-17T17:27:42,509   creating build/lib.linux-armv7l-cpython-311
2023-10-17T17:27:42,510   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,511   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,513   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,518   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,520   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,522   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,524   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,525   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,527   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,529   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,531   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,535   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,538   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,540   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,542   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,544   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,546   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,548   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,550   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,552   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,554   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,557   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:42,559   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-17T17:27:42,560   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-17T17:27:42,562   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-17T17:27:42,565   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-10-17T17:27:42,569   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-17T17:27:42,570   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-17T17:27:42,571   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-17T17:27:42,574   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-17T17:27:42,576   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-10-17T17:27:42,579   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,579   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,581   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,583   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,585   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,588   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,590   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-10-17T17:27:42,594   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,595   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,597   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,599   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,601   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,604   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,606   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,609   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,611   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,613   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,617   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,619   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,622   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,624   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-10-17T17:27:42,627   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-17T17:27:42,629   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-17T17:27:42,630   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-17T17:27:42,634   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-17T17:27:42,635   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-10-17T17:27:42,637   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,639   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,640   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,643   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,646   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,648   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,651   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,653   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,655   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,657   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,659   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,662   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,664   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,667   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,670   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,672   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-10-17T17:27:42,675   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-17T17:27:42,676   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-17T17:27:42,678   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-17T17:27:42,681   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-17T17:27:42,683   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-10-17T17:27:42,686   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-17T17:27:42,687   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-17T17:27:42,689   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-10-17T17:27:42,691   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-17T17:27:42,693   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-17T17:27:42,695   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-17T17:27:42,698   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-17T17:27:42,700   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-10-17T17:27:42,704   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-17T17:27:42,705   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-17T17:27:42,707   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-17T17:27:42,709   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-17T17:27:42,711   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-10-17T17:27:42,714   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-17T17:27:42,716   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-17T17:27:42,717   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-10-17T17:27:42,720   running egg_info
2023-10-17T17:27:42,725   writing moleculekit.egg-info/PKG-INFO
2023-10-17T17:27:42,728   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-17T17:27:42,730   writing requirements to moleculekit.egg-info/requires.txt
2023-10-17T17:27:42,731   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-17T17:27:42,743   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,744   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,744   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,745   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,745   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,746   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,746   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,747   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,747   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,748   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,749   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,750   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,751   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,751   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,752   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,752   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,753   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,754   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,755   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,755   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,756   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,756   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,756   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,757   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,757   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,758   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,758   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,759   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,760   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,760   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,761   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,761   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,762   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,763   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,763   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,764   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,764   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,765   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,765   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,766   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,766   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,767   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,767   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,767   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,768   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,769   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,769   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,770   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,770   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,771   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,771   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,772   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,773   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,773   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,774   dependency /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T17:27:42,775   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:42,781   reading manifest template 'MANIFEST.in'
2023-10-17T17:27:42,996   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T17:27:42,998   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T17:27:42,999   no previously-included directories found matching 'package'
2023-10-17T17:27:43,000   adding license file 'LICENSE'
2023-10-17T17:27:43,014   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T17:27:43,024   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-17T17:27:43,025   !!

2023-10-17T17:27:43,026           ********************************************************************************
2023-10-17T17:27:43,027           ############################
2023-10-17T17:27:43,028           # Package would be ignored #
2023-10-17T17:27:43,028           ############################
2023-10-17T17:27:43,029           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-17T17:27:43,030           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,032           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,033           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-17T17:27:43,034           to the `packages` configuration field.

2023-10-17T17:27:43,035           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,036           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,037           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,038           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,039           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,041           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-17T17:27:43,042           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-17T17:27:43,042           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,043           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,044           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,045           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,047           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,049           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,049                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,050                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,051                 directory, all directories are treated like packages.
2023-10-17T17:27:43,052           ********************************************************************************

2023-10-17T17:27:43,053   !!
2023-10-17T17:27:43,054     check.warn(importable)
2023-10-17T17:27:43,054   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-17T17:27:43,055   !!

2023-10-17T17:27:43,057           ********************************************************************************
2023-10-17T17:27:43,058           ############################
2023-10-17T17:27:43,058           # Package would be ignored #
2023-10-17T17:27:43,059           ############################
2023-10-17T17:27:43,059           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-17T17:27:43,060           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,061           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,061           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-17T17:27:43,062           to the `packages` configuration field.

2023-10-17T17:27:43,063           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,063           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,064           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,065           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,066           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,067           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-17T17:27:43,067           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-17T17:27:43,068           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,069           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,069           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,070           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,072           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,074           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,074                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,075                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,076                 directory, all directories are treated like packages.
2023-10-17T17:27:43,077           ********************************************************************************

2023-10-17T17:27:43,078   !!
2023-10-17T17:27:43,078     check.warn(importable)
2023-10-17T17:27:43,079   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-17T17:27:43,080   !!

2023-10-17T17:27:43,081           ********************************************************************************
2023-10-17T17:27:43,082           ############################
2023-10-17T17:27:43,083           # Package would be ignored #
2023-10-17T17:27:43,083           ############################
2023-10-17T17:27:43,084           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-17T17:27:43,085           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,086           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,087           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-17T17:27:43,089           to the `packages` configuration field.

2023-10-17T17:27:43,094           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,106           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,136           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,139           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,140           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,142           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-17T17:27:43,142           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-17T17:27:43,143           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,143           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,144           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,145           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,146           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,147           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,148                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,149                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,149                 directory, all directories are treated like packages.
2023-10-17T17:27:43,150           ********************************************************************************

2023-10-17T17:27:43,151   !!
2023-10-17T17:27:43,152     check.warn(importable)
2023-10-17T17:27:43,152   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-17T17:27:43,153   !!

2023-10-17T17:27:43,163           ********************************************************************************
2023-10-17T17:27:43,181           ############################
2023-10-17T17:27:43,182           # Package would be ignored #
2023-10-17T17:27:43,183           ############################
2023-10-17T17:27:43,183           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-17T17:27:43,184           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,185           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,185           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-17T17:27:43,186           to the `packages` configuration field.

2023-10-17T17:27:43,187           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,188           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,188           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,189           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,190           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,191           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-17T17:27:43,192           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-17T17:27:43,192           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,193           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,194           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,195           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,196           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,216           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,218                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,219                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,220                 directory, all directories are treated like packages.
2023-10-17T17:27:43,220           ********************************************************************************

2023-10-17T17:27:43,221   !!
2023-10-17T17:27:43,222     check.warn(importable)
2023-10-17T17:27:43,222   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-17T17:27:43,223   !!

2023-10-17T17:27:43,224           ********************************************************************************
2023-10-17T17:27:43,224           ############################
2023-10-17T17:27:43,225           # Package would be ignored #
2023-10-17T17:27:43,225           ############################
2023-10-17T17:27:43,226           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-17T17:27:43,226           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,227           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,227           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-17T17:27:43,228           to the `packages` configuration field.

2023-10-17T17:27:43,229           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,229           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,230           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,237           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,254           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,255           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-17T17:27:43,256           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-17T17:27:43,256           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,257           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,258           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,259           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,260           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,263           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,263                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,264                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,264                 directory, all directories are treated like packages.
2023-10-17T17:27:43,265           ********************************************************************************

2023-10-17T17:27:43,267   !!
2023-10-17T17:27:43,268     check.warn(importable)
2023-10-17T17:27:43,269   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-17T17:27:43,270   !!

2023-10-17T17:27:43,271           ********************************************************************************
2023-10-17T17:27:43,272           ############################
2023-10-17T17:27:43,273           # Package would be ignored #
2023-10-17T17:27:43,273           ############################
2023-10-17T17:27:43,274           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-17T17:27:43,275           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,276           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,277           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-17T17:27:43,278           to the `packages` configuration field.

2023-10-17T17:27:43,279           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,280           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,280           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,281           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,282           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,283           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-17T17:27:43,284           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-17T17:27:43,284           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,285           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,285           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,286           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,287           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,289           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,290                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,290                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,291                 directory, all directories are treated like packages.
2023-10-17T17:27:43,292           ********************************************************************************

2023-10-17T17:27:43,293   !!
2023-10-17T17:27:43,294     check.warn(importable)
2023-10-17T17:27:43,294   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-17T17:27:43,295   !!

2023-10-17T17:27:43,296           ********************************************************************************
2023-10-17T17:27:43,297           ############################
2023-10-17T17:27:43,298           # Package would be ignored #
2023-10-17T17:27:43,299           ############################
2023-10-17T17:27:43,300           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-17T17:27:43,301           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,303           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,304           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-17T17:27:43,304           to the `packages` configuration field.

2023-10-17T17:27:43,305           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,306           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,306           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,308           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,309           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,310           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-17T17:27:43,311           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-17T17:27:43,312           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,312           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,314           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,316           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,319           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,321           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,322                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,323                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,323                 directory, all directories are treated like packages.
2023-10-17T17:27:43,324           ********************************************************************************

2023-10-17T17:27:43,325   !!
2023-10-17T17:27:43,326     check.warn(importable)
2023-10-17T17:27:43,326   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-17T17:27:43,327   !!

2023-10-17T17:27:43,328           ********************************************************************************
2023-10-17T17:27:43,328           ############################
2023-10-17T17:27:43,329           # Package would be ignored #
2023-10-17T17:27:43,329           ############################
2023-10-17T17:27:43,330           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-17T17:27:43,330           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,332           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,332           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-17T17:27:43,333           to the `packages` configuration field.

2023-10-17T17:27:43,334           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,335           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,336           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,361           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,421           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,489           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-17T17:27:43,489           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-17T17:27:43,492           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,493           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,493           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,494           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,495           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,497           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,497                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,498                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,498                 directory, all directories are treated like packages.
2023-10-17T17:27:43,499           ********************************************************************************

2023-10-17T17:27:43,500   !!
2023-10-17T17:27:43,501     check.warn(importable)
2023-10-17T17:27:43,502   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-17T17:27:43,502   !!

2023-10-17T17:27:43,504           ********************************************************************************
2023-10-17T17:27:43,504           ############################
2023-10-17T17:27:43,504           # Package would be ignored #
2023-10-17T17:27:43,505           ############################
2023-10-17T17:27:43,505           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-17T17:27:43,506           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,506           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,507           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-17T17:27:43,507           to the `packages` configuration field.

2023-10-17T17:27:43,508           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,508           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,509           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,510           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,511           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,511           If you don't want 'moleculekit.share' to be distributed and are
2023-10-17T17:27:43,512           already explicitly excluding 'moleculekit.share' via
2023-10-17T17:27:43,512           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,513           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,514           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,515           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,516           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,518           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,519                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,519                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,520                 directory, all directories are treated like packages.
2023-10-17T17:27:43,520           ********************************************************************************

2023-10-17T17:27:43,522   !!
2023-10-17T17:27:43,522     check.warn(importable)
2023-10-17T17:27:43,523   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-17T17:27:43,523   !!

2023-10-17T17:27:43,525           ********************************************************************************
2023-10-17T17:27:43,525           ############################
2023-10-17T17:27:43,526           # Package would be ignored #
2023-10-17T17:27:43,527           ############################
2023-10-17T17:27:43,527           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-17T17:27:43,528           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,529           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,529           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-17T17:27:43,530           to the `packages` configuration field.

2023-10-17T17:27:43,531           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,531           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,532           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,533           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,534           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,535           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-17T17:27:43,536           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-17T17:27:43,536           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,536           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,537           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,538           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,539           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,542           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,542                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,542                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,543                 directory, all directories are treated like packages.
2023-10-17T17:27:43,543           ********************************************************************************

2023-10-17T17:27:43,544   !!
2023-10-17T17:27:43,545     check.warn(importable)
2023-10-17T17:27:43,545   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-17T17:27:43,546   !!

2023-10-17T17:27:43,547           ********************************************************************************
2023-10-17T17:27:43,548           ############################
2023-10-17T17:27:43,549           # Package would be ignored #
2023-10-17T17:27:43,550           ############################
2023-10-17T17:27:43,550           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-17T17:27:43,551           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,552           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,552           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-17T17:27:43,553           to the `packages` configuration field.

2023-10-17T17:27:43,554           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,555           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,555           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,556           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,558           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,559           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-17T17:27:43,559           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-17T17:27:43,560           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,560           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,561           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,562           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,563           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,565           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,565                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,566                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,566                 directory, all directories are treated like packages.
2023-10-17T17:27:43,567           ********************************************************************************

2023-10-17T17:27:43,568   !!
2023-10-17T17:27:43,569     check.warn(importable)
2023-10-17T17:27:43,569   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-17T17:27:43,570   !!

2023-10-17T17:27:43,570           ********************************************************************************
2023-10-17T17:27:43,571           ############################
2023-10-17T17:27:43,571           # Package would be ignored #
2023-10-17T17:27:43,572           ############################
2023-10-17T17:27:43,572           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-17T17:27:43,572           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,573           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,574           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-17T17:27:43,574           to the `packages` configuration field.

2023-10-17T17:27:43,575           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,576           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,576           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,577           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,578           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,579           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-17T17:27:43,580           already explicitly excluding 'moleculekit.tmalign' via
2023-10-17T17:27:43,580           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,581           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,581           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,582           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,583           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,585           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,586                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,586                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,587                 directory, all directories are treated like packages.
2023-10-17T17:27:43,587           ********************************************************************************

2023-10-17T17:27:43,588   !!
2023-10-17T17:27:43,589     check.warn(importable)
2023-10-17T17:27:43,589   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-17T17:27:43,590   !!

2023-10-17T17:27:43,591           ********************************************************************************
2023-10-17T17:27:43,591           ############################
2023-10-17T17:27:43,592           # Package would be ignored #
2023-10-17T17:27:43,593           ############################
2023-10-17T17:27:43,593           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-17T17:27:43,594           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,595           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,595           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-17T17:27:43,596           to the `packages` configuration field.

2023-10-17T17:27:43,597           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,598           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,598           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,599           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,600           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,601           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-17T17:27:43,601           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-17T17:27:43,602           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,602           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,603           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,604           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,604           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,606           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,606                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,607                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,607                 directory, all directories are treated like packages.
2023-10-17T17:27:43,608           ********************************************************************************

2023-10-17T17:27:43,609   !!
2023-10-17T17:27:43,609     check.warn(importable)
2023-10-17T17:27:43,610   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-17T17:27:43,610   !!

2023-10-17T17:27:43,611           ********************************************************************************
2023-10-17T17:27:43,612           ############################
2023-10-17T17:27:43,612           # Package would be ignored #
2023-10-17T17:27:43,613           ############################
2023-10-17T17:27:43,613           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-17T17:27:43,614           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,615           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,616           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-17T17:27:43,616           to the `packages` configuration field.

2023-10-17T17:27:43,617           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,618           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,618           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,619           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,620           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,622           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-17T17:27:43,623           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-17T17:27:43,623           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,624           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,624           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,626           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,627           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,628           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,629                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,629                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,630                 directory, all directories are treated like packages.
2023-10-17T17:27:43,630           ********************************************************************************

2023-10-17T17:27:43,631   !!
2023-10-17T17:27:43,632     check.warn(importable)
2023-10-17T17:27:43,632   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-17T17:27:43,633   !!

2023-10-17T17:27:43,634           ********************************************************************************
2023-10-17T17:27:43,634           ############################
2023-10-17T17:27:43,634           # Package would be ignored #
2023-10-17T17:27:43,635           ############################
2023-10-17T17:27:43,635           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-17T17:27:43,636           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,637           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,637           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-17T17:27:43,638           to the `packages` configuration field.

2023-10-17T17:27:43,638           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,639           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,639           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,640           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,641           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,642           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-17T17:27:43,643           already explicitly excluding 'moleculekit.wrapping' via
2023-10-17T17:27:43,643           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,644           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,644           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,646           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,647           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,648           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,649                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,649                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,650                 directory, all directories are treated like packages.
2023-10-17T17:27:43,650           ********************************************************************************

2023-10-17T17:27:43,651   !!
2023-10-17T17:27:43,652     check.warn(importable)
2023-10-17T17:27:43,652   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-17T17:27:43,653   !!

2023-10-17T17:27:43,654           ********************************************************************************
2023-10-17T17:27:43,655           ############################
2023-10-17T17:27:43,656           # Package would be ignored #
2023-10-17T17:27:43,656           ############################
2023-10-17T17:27:43,657           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-17T17:27:43,657           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,658           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,658           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-17T17:27:43,659           to the `packages` configuration field.

2023-10-17T17:27:43,660           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,660           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,660           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,661           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,662           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,663           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-17T17:27:43,664           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-17T17:27:43,664           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,664           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,665           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,666           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,667           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,668           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,668                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,669                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,670                 directory, all directories are treated like packages.
2023-10-17T17:27:43,670           ********************************************************************************

2023-10-17T17:27:43,671   !!
2023-10-17T17:27:43,672     check.warn(importable)
2023-10-17T17:27:43,672   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-17T17:27:43,673   !!

2023-10-17T17:27:43,674           ********************************************************************************
2023-10-17T17:27:43,674           ############################
2023-10-17T17:27:43,675           # Package would be ignored #
2023-10-17T17:27:43,675           ############################
2023-10-17T17:27:43,676           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-17T17:27:43,676           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,677           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,678           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-17T17:27:43,678           to the `packages` configuration field.

2023-10-17T17:27:43,679           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,680           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,680           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,681           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,682           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,683           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-17T17:27:43,684           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-17T17:27:43,685           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,685           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,686           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,686           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,687           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,688           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,689                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,689                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,690                 directory, all directories are treated like packages.
2023-10-17T17:27:43,690           ********************************************************************************

2023-10-17T17:27:43,691   !!
2023-10-17T17:27:43,691     check.warn(importable)
2023-10-17T17:27:43,692   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-17T17:27:43,692   !!

2023-10-17T17:27:43,693           ********************************************************************************
2023-10-17T17:27:43,693           ############################
2023-10-17T17:27:43,694           # Package would be ignored #
2023-10-17T17:27:43,694           ############################
2023-10-17T17:27:43,695           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-17T17:27:43,695           but it is absent from setuptools' `packages` configuration.

2023-10-17T17:27:43,696           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T17:27:43,697           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-17T17:27:43,697           to the `packages` configuration field.

2023-10-17T17:27:43,698           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T17:27:43,699           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T17:27:43,699           instead of `find_packages(...)`/`find:`).

2023-10-17T17:27:43,700           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T17:27:43,701           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T17:27:43,702           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-17T17:27:43,702           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-17T17:27:43,703           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T17:27:43,703           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T17:27:43,704           combination with a more fine grained `package-data` configuration.

2023-10-17T17:27:43,705           You can read more about "package data files" on setuptools documentation page:

2023-10-17T17:27:43,706           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T17:27:43,707           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T17:27:43,708                 even if it does not contain any `.py` files.
2023-10-17T17:27:43,708                 On the other hand, currently there is no concept of package data
2023-10-17T17:27:43,709                 directory, all directories are treated like packages.
2023-10-17T17:27:43,709           ********************************************************************************

2023-10-17T17:27:43,710   !!
2023-10-17T17:27:43,711     check.warn(importable)
2023-10-17T17:27:43,711   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:43,712   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:43,712   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-17T17:27:43,713   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-17T17:27:43,713   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-17T17:27:43,714   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-17T17:27:43,714   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-17T17:27:43,714   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-17T17:27:43,715   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-17T17:27:43,715   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-17T17:27:43,716   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-17T17:27:43,716   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-17T17:27:43,717   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-17T17:27:43,717   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-17T17:27:43,718   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-17T17:27:43,718   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-17T17:27:43,718   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-17T17:27:43,719   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-10-17T17:27:43,719   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-17T17:27:43,720   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-10-17T17:27:43,720   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-10-17T17:27:43,721   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,721   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,722   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,722   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,723   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,723   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,724   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,724   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,725   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,725   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,726   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,726   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,727   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,727   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,727   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,728   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,728   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,729   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,729   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,729   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,730   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,730   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,731   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,731   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,732   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,732   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,733   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,733   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,734   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,734   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,735   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,735   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,736   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,736   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,737   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,737   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,738   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,738   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,739   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,740   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,740   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,741   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,741   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,741   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,742   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,742   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,743   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,743   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,743   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,744   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,744   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,745   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,745   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,746   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,746   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,747   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,747   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,747   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,748   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,748   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,749   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,750   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,750   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,751   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,751   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,751   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,752   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,753   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,753   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,754   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,754   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,755   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,755   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,756   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,756   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,756   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,757   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,757   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,758   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,758   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,759   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,759   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,760   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,760   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,761   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,761   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,762   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,762   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,763   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,763   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,764   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,764   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,765   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,766   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,766   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,766   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,767   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,767   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,768   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,768   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,768   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,769   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,769   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,770   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,770   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,771   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,771   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,773   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,775   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,777   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,779   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,781   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,783   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,785   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,787   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,789   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,792   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,794   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,796   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,798   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,800   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,802   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,804   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,806   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,807   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,809   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,811   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,813   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,815   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,817   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,818   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,820   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,822   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,824   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,826   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,828   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,830   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,832   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,834   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,836   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,838   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,840   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,843   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,845   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,848   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,850   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,853   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,855   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,858   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,860   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,862   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,865   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,867   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,869   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,871   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,874   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,876   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,878   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,881   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,883   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,886   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,888   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,891   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,893   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,896   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,898   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,900   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,903   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,905   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,908   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,910   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,913   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,915   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,918   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,920   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,922   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-10-17T17:27:43,925   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-17T17:27:43,926   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-17T17:27:43,952   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-17T17:27:43,954   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-17T17:27:43,956   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-17T17:27:43,956   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-10-17T17:27:43,958   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-17T17:27:43,959   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-17T17:27:43,965   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-17T17:27:43,966   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-17T17:27:43,985   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-17T17:27:43,988   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-17T17:27:43,989   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-17T17:27:44,007   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-17T17:27:44,009   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-17T17:27:44,011   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-17T17:27:44,012   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-17T17:27:44,015   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-17T17:27:44,017   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-10-17T17:27:44,018   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-17T17:27:44,019   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-17T17:27:44,023   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-17T17:27:44,025   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-17T17:27:44,027   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-17T17:27:44,028   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-17T17:27:44,048   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-17T17:27:44,050   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-17T17:27:44,051   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-17T17:27:44,077   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-17T17:27:44,080   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-17T17:27:44,081   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-17T17:27:44,101   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-17T17:27:44,103   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-17T17:27:44,104   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-17T17:27:44,124   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-17T17:27:44,134   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-17T17:27:44,134   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.4'
2023-10-17T17:27:44,135   running build_ext
2023-10-17T17:27:44,145   building 'moleculekit.interactions.hbonds' extension
2023-10-17T17:27:44,146   creating build/temp.linux-armv7l-cpython-311
2023-10-17T17:27:44,146   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-10-17T17:27:44,147   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-10-17T17:27:44,148   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-10-17T17:27:44,150   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-17T17:27:44,464   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:27:44,465                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:27:44,465                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:27:44,466                    from moleculekit/interactions/hbonds/hbonds.cpp:1219:
2023-10-17T17:27:44,467   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:27:44,467      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:27:44,468         |  ^~~~~~~
2023-10-17T17:28:14,920   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:28:15,215   building 'moleculekit.interactions.pipi' extension
2023-10-17T17:28:15,215   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-10-17T17:28:15,216   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-10-17T17:28:15,526   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:28:15,527                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:28:15,527                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:28:15,528                    from moleculekit/interactions/pipi/pipi.cpp:1219:
2023-10-17T17:28:15,529   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:28:15,529      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:28:15,529         |  ^~~~~~~
2023-10-17T17:28:48,251   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:28:48,542   building 'moleculekit.interactions.cationpi' extension
2023-10-17T17:28:48,543   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-10-17T17:28:48,543   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-17T17:28:48,863   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:28:48,864                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:28:48,864                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:28:48,865                    from moleculekit/interactions/cationpi/cationpi.cpp:1219:
2023-10-17T17:28:48,865   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:28:48,866      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:28:48,866         |  ^~~~~~~
2023-10-17T17:29:21,346   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:29:21,629   building 'moleculekit.interactions.sigmahole' extension
2023-10-17T17:29:21,630   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-10-17T17:29:21,631   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-17T17:29:21,935   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:29:21,935                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:29:21,936                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:29:21,937                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1219:
2023-10-17T17:29:21,937   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:29:21,938      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:29:21,939         |  ^~~~~~~
2023-10-17T17:29:54,859   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:29:55,227   building 'moleculekit.wrapping' extension
2023-10-17T17:29:55,228   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-10-17T17:29:55,228   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-10-17T17:29:55,570   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:29:55,571                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:29:55,572                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:29:55,572                    from moleculekit/wrapping/wrapping.cpp:1219:
2023-10-17T17:29:55,573   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:29:55,574      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:29:55,574         |  ^~~~~~~
2023-10-17T17:30:23,873   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:30:24,059   building 'moleculekit.bondguesser_utils' extension
2023-10-17T17:30:24,059   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-10-17T17:30:24,060   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-17T17:30:24,363   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:30:24,364                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:30:24,364                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:30:24,365                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1219:
2023-10-17T17:30:24,365   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:30:24,366      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:30:24,367         |  ^~~~~~~
2023-10-17T17:30:26,700   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-17T17:30:26,701   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19759:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T17:30:26,701   19759 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-17T17:30:26,702         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T17:30:26,702   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T17:30:26,703   19771 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-17T17:30:26,703         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T17:30:26,704   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T17:30:26,704   19783 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-17T17:30:26,705         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T17:30:26,706   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19822:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,706   19822 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T17:30:26,707         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,708   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19861:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,708   19861 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T17:30:26,709         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,710   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19900:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,710   19900 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,711         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,712   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19939:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,712   19939 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T17:30:26,713         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,713   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19945:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,714   19945 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T17:30:26,715         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,715   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19986:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,716   19986 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T17:30:26,717         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,718   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19992:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,718   19992 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,719         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,720   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20033:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,720   20033 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T17:30:26,721         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,721   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20039:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,722   20039 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,722         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,723   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20080:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,724   20080 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T17:30:26,724         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,726   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20133:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,726   20133 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,727         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,728   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20180:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,729   20180 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,729         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,730   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20221:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,731   20221 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T17:30:26,731         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,732   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20227:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,732   20227 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T17:30:26,733         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,734   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,734   20233 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,735         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,736   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20280:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,736   20280 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T17:30:26,737         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,738   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20286:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,738   20286 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,739         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,740   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20327:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,740   20327 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T17:30:26,741         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,741   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,742   20339 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,743         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,743   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20392:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T17:30:26,744   20392 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T17:30:26,744         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,768   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-17T17:30:26,769   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21014:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T17:30:26,770   21014 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-17T17:30:26,770         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-17T17:30:26,771   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21051:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T17:30:26,772   21051 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-17T17:30:26,772         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-17T17:30:53,231   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:30:53,499   building 'moleculekit.atomselect_utils' extension
2023-10-17T17:30:53,500   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-10-17T17:30:53,500   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-17T17:30:53,807   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:30:53,808                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:30:53,808                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:30:53,809                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1236:
2023-10-17T17:30:53,810   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:30:53,811      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:30:53,811         |  ^~~~~~~
2023-10-17T17:30:56,374   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-17T17:30:56,375   moleculekit/atomselect_utils/atomselect_utils.cpp:23713:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T17:30:56,375   23713 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-17T17:30:56,376         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-17T17:30:56,381   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-17T17:30:56,382   moleculekit/atomselect_utils/atomselect_utils.cpp:23965:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T17:30:56,383   23965 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-17T17:30:56,383         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T17:30:56,389   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-17T17:30:56,390   moleculekit/atomselect_utils/atomselect_utils.cpp:24232:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T17:30:56,390   24232 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-17T17:30:56,391         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T17:31:30,985   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:31:31,279   building 'moleculekit.distance_utils' extension
2023-10-17T17:31:31,280   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-10-17T17:31:31,281   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-10-17T17:31:31,590   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:31:31,590                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:31:31,591                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:31:31,591                    from moleculekit/distance_utils/distance_utils.cpp:1219:
2023-10-17T17:31:31,592   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:31:31,592      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:31:31,593         |  ^~~~~~~
2023-10-17T17:32:08,489   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:32:08,773   building 'moleculekit.occupancy_utils' extension
2023-10-17T17:32:08,774   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-10-17T17:32:08,774   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-17T17:32:09,083   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:32:09,084                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:32:09,085                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:32:09,085                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1219:
2023-10-17T17:32:09,086   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:32:09,086      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:32:09,087         |  ^~~~~~~
2023-10-17T17:32:36,345   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:32:36,531   building 'moleculekit.xtc' extension
2023-10-17T17:32:36,532   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-10-17T17:32:36,532   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-10-17T17:32:36,533   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-10-17T17:32:37,190   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,191      66 |         "OK",
2023-10-17T17:32:37,191         |         ^~~~
2023-10-17T17:32:37,192   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,192      67 |         "Header",
2023-10-17T17:32:37,193         |         ^~~~~~~~
2023-10-17T17:32:37,193   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,194      68 |         "String",
2023-10-17T17:32:37,194         |         ^~~~~~~~
2023-10-17T17:32:37,195   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,195      69 |         "Double",
2023-10-17T17:32:37,196         |         ^~~~~~~~
2023-10-17T17:32:37,196   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,197      70 |         "Integer",
2023-10-17T17:32:37,197         |         ^~~~~~~~~
2023-10-17T17:32:37,198   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,198      71 |         "Float",
2023-10-17T17:32:37,199         |         ^~~~~~~
2023-10-17T17:32:37,199   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,200      72 |         "Unsigned integer",
2023-10-17T17:32:37,200         |         ^~~~~~~~~~~~~~~~~~
2023-10-17T17:32:37,201   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,202      73 |         "Compressed 3D coordinate",
2023-10-17T17:32:37,202         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:32:37,203   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,203      74 |         "Closing file",
2023-10-17T17:32:37,204         |         ^~~~~~~~~~~~~~
2023-10-17T17:32:37,204   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,205      75 |         "Magic number",
2023-10-17T17:32:37,206         |         ^~~~~~~~~~~~~~
2023-10-17T17:32:37,206   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,207      76 |         "Not enough memory",
2023-10-17T17:32:37,208         |         ^~~~~~~~~~~~~~~~~~~
2023-10-17T17:32:37,208   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,209      77 |         "End of file",
2023-10-17T17:32:37,209         |         ^~~~~~~~~~~~~
2023-10-17T17:32:37,210   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T17:32:37,211      78 |         "File not found"
2023-10-17T17:32:37,211         |         ^~~~~~~~~~~~~~~~
2023-10-17T17:32:37,220   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-17T17:32:37,221   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,222     459 |     while (size >= num && num_of_bits < 32)
2023-10-17T17:32:37,222         |            ~~~~~^~~~~~
2023-10-17T17:32:37,223   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-17T17:32:37,224   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,224     505 |     while (bytes[num_of_bytes] >= num)
2023-10-17T17:32:37,225         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-17T17:32:37,228   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-17T17:32:37,229   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,230     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-17T17:32:37,230         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-17T17:32:37,231   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,231     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-10-17T17:32:37,232         |                             ~~^~~~~~~~~~~~~~
2023-10-17T17:32:37,232   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,233     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-10-17T17:32:37,234         |                             ~~^~~~~~~~~~~~~~~~
2023-10-17T17:32:37,236   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-17T17:32:37,237   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,237     664 |                 if (lastbits < num_of_bits)
2023-10-17T17:32:37,238         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-10-17T17:32:37,243   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-17T17:32:37,243   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,244     785 |         if(size3>xfp->buf1size)
2023-10-17T17:32:37,245         |            ~~~~~^~~~~~~~~~~~~~
2023-10-17T17:32:37,248   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,248     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T17:32:37,249         |                          ^
2023-10-17T17:32:37,253   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,254     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-17T17:32:37,254         |                                    ~~~~~~~~~^~~~~~~~
2023-10-17T17:32:37,255   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,256     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-17T17:32:37,256         |                                    ~~~~~~~~~^~~~~~~~
2023-10-17T17:32:37,257   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,258     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-17T17:32:37,259         |                                    ~~~~~~~~~^~~~~~~~
2023-10-17T17:32:37,259   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,260     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-17T17:32:37,260         |                                    ~~~~~~~~~^~~~~~~~
2023-10-17T17:32:37,261   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,261     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-17T17:32:37,262         |                                    ~~~~~~~~~^~~~~~~~
2023-10-17T17:32:37,262   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,263     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-10-17T17:32:37,263         |                                    ~~~~~~~~~^~~~~~~~
2023-10-17T17:32:37,265   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-17T17:32:37,265     756 |         int smallidx,  minidx, maxidx;
2023-10-17T17:32:37,266         |                        ^~~~~~
2023-10-17T17:32:37,266   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-17T17:32:37,267     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-17T17:32:37,267         |                                ^~~~~~
2023-10-17T17:32:37,268   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-17T17:32:37,269     763 |         int errval=1;
2023-10-17T17:32:37,269         |             ^~~~~~
2023-10-17T17:32:37,272   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-17T17:32:37,272   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,273    1011 |         if(size3>xfp->buf1size)
2023-10-17T17:32:37,274         |            ~~~~~^~~~~~~~~~~~~~
2023-10-17T17:32:37,276   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,277    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T17:32:37,278         |                                 ~~~~~~~~^~~~~~~
2023-10-17T17:32:37,279   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,279    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T17:32:37,280         |                           ~~~~~~~~^~~~~~~
2023-10-17T17:32:37,281   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,282    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T17:32:37,282         |                           ~~~~~~~~^~~~~~~
2023-10-17T17:32:37,285   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,285    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-17T17:32:37,286         |                         ^
2023-10-17T17:32:37,287   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,288    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T17:32:37,288         |                          ^
2023-10-17T17:32:37,294   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,294    1275 |         if(tmp==(unsigned int)buf2[0])
2023-10-17T17:32:37,295         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:32:37,295   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-17T17:32:37,296    1001 |         int errval;
2023-10-17T17:32:37,296         |             ^~~~~~
2023-10-17T17:32:37,300   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-17T17:32:37,301   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,301    1316 |         if(size3>xfp->buf1size)
2023-10-17T17:32:37,302         |            ~~~~~^~~~~~~~~~~~~~
2023-10-17T17:32:37,305   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,306    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T17:32:37,306         |                          ^
2023-10-17T17:32:37,311   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-17T17:32:37,312    1289 |         int smallidx,  maxidx, minidx;
2023-10-17T17:32:37,312         |                                ^~~~~~
2023-10-17T17:32:37,313   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-17T17:32:37,314    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-10-17T17:32:37,314         |                                ^~~~~~
2023-10-17T17:32:37,315   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-17T17:32:37,315    1297 |         int errval=1;
2023-10-17T17:32:37,316         |             ^~~~~~
2023-10-17T17:32:37,318   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-17T17:32:37,319   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,320    1513 |         if(size3>xfp->buf1size) {
2023-10-17T17:32:37,320         |            ~~~~~^~~~~~~~~~~~~~
2023-10-17T17:32:37,326   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,327    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-17T17:32:37,328         |                         ^
2023-10-17T17:32:37,328   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T17:32:37,329    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T17:32:37,330         |                          ^
2023-10-17T17:32:37,336   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T17:32:37,336    1743 |         if(tmp==(unsigned int)buf2[0])
2023-10-17T17:32:37,337         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T17:32:37,338   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-17T17:32:37,338    1504 |         int errval=1;
2023-10-17T17:32:37,339         |             ^~~~~~
2023-10-17T17:32:40,180   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-17T17:32:40,448   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-10-17T17:32:41,220   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-17T17:32:41,220   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-17T17:32:41,221     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-17T17:32:41,222         |             ^~~
2023-10-17T17:32:41,229   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-17T17:32:41,230   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-17T17:32:41,231     418 |         int nf3 = nframes * 3;
2023-10-17T17:32:41,231         |             ^~~
2023-10-17T17:32:41,236   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-17T17:32:41,237   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-17T17:32:41,237     491 |         int reading_index = 0;
2023-10-17T17:32:41,238         |             ^~~~~~~~~~~~~
2023-10-17T17:32:41,239   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-17T17:32:41,239     492 |         int writing_index = 0;
2023-10-17T17:32:41,240         |             ^~~~~~~~~~~~~
2023-10-17T17:32:42,639   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-10-17T17:32:42,967   In file included from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T17:32:42,968                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T17:32:42,969                    from /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T17:32:42,969                    from moleculekit/xtc_utils/xtc.cpp:1223:
2023-10-17T17:32:42,970   /tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T17:32:42,970      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T17:32:42,971         |  ^~~~~~~
2023-10-17T17:33:07,008   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:33:07,290   building 'moleculekit.tmalign' extension
2023-10-17T17:33:07,291   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-10-17T17:33:07,292   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-10-17T17:33:07,293   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-10-17T17:33:41,140   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-daak5mrf/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-10-17T17:34:03,711   In file included from /usr/include/c++/12/vector:70,
2023-10-17T17:34:03,712                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-17T17:34:03,712   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-17T17:34:03,713   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-17T17:34:03,714     439 |       vector<_Tp, _Alloc>::
2023-10-17T17:34:03,714         |       ^~~~~~~~~~~~~~~~~~~
2023-10-17T17:34:04,514   In file included from /usr/include/c++/12/vector:64:
2023-10-17T17:34:04,514   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-17T17:34:04,515       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20737:32,
2023-10-17T17:34:04,516       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20222:52:
2023-10-17T17:34:04,516   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T17:34:04,517    1287 |           _M_realloc_insert(end(), __x);
2023-10-17T17:34:04,518         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T17:34:04,518   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-17T17:34:04,519       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20751:33,
2023-10-17T17:34:04,520       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20222:52:
2023-10-17T17:34:04,520   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T17:34:04,521    1287 |           _M_realloc_insert(end(), __x);
2023-10-17T17:34:04,522         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T17:34:04,522   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-10-17T17:34:04,523       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20836:34,
2023-10-17T17:34:04,523       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20222:52:
2023-10-17T17:34:04,524   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T17:34:04,525    1287 |           _M_realloc_insert(end(), __x);
2023-10-17T17:34:04,525         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T17:34:06,903   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-10-17T17:34:07,296   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-10-17T17:34:07,297   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.4'
2023-10-17T17:34:07,298   installing to build/bdist.linux-armv7l/wheel
2023-10-17T17:34:07,298   running install
2023-10-17T17:34:07,320   running install_lib
2023-10-17T17:34:07,326   creating build/bdist.linux-armv7l
2023-10-17T17:34:07,326   creating build/bdist.linux-armv7l/wheel
2023-10-17T17:34:07,329   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,332   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T17:34:07,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T17:34:07,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T17:34:07,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T17:34:07,342   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,370   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,387   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T17:34:07,389   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T17:34:07,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T17:34:07,393   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T17:34:07,396   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T17:34:07,399   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T17:34:07,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T17:34:07,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T17:34:07,422   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,427   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,430   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T17:34:07,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T17:34:07,432   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T17:34:07,435   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T17:34:07,437   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T17:34:07,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T17:34:07,447   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T17:34:07,448   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T17:34:07,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T17:34:07,476   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T17:34:07,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T17:34:07,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T17:34:07,482   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T17:34:07,484   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T17:34:07,485   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T17:34:07,488   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T17:34:07,491   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T17:34:07,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T17:34:07,495   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,497   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,500   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,508   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,510   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,512   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,515   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,517   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T17:34:07,518   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T17:34:07,520   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T17:34:07,522   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,524   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,527   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,529   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,532   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T17:34:07,537   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,540   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,562   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T17:34:07,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T17:34:07,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T17:34:07,586   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T17:34:07,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T17:34:07,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T17:34:07,610   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,632   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T17:34:07,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T17:34:07,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T17:34:07,655   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,677   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T17:34:07,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T17:34:07,680   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T17:34:07,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T17:34:07,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,742   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T17:34:07,743   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T17:34:07,745   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-17T17:34:07,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-17T17:34:07,749   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-17T17:34:07,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-17T17:34:07,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T17:34:07,774   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T17:34:07,776   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,778   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,803   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T17:34:07,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T17:34:07,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T17:34:07,826   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T17:34:07,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T17:34:07,830   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T17:34:07,854   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,860   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-17T17:34:07,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-17T17:34:07,865   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T17:34:07,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T17:34:07,869   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T17:34:07,874   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T17:34:07,878   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T17:34:07,883   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T17:34:07,885   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T17:34:07,887   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T17:34:07,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T17:34:07,894   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T17:34:07,898   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T17:34:07,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T17:34:07,903   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T17:34:07,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,910   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T17:34:07,912   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T17:34:07,939   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T17:34:07,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,968   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T17:34:07,968   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T17:34:07,990   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T17:34:07,993   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,997   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:07,999   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,001   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,006   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T17:34:08,008   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-17T17:34:08,009   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-17T17:34:08,011   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T17:34:08,013   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T17:34:08,015   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-17T17:34:08,019   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,020   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,022   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,024   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,026   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,028   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,030   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,032   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,034   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,036   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,038   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,040   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,044   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,046   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,050   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,052   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,054   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,056   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,057   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,061   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,065   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,067   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,068   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,070   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,072   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,076   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,080   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,082   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,085   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,087   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,095   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,098   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,102   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,106   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,107   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,109   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,111   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,114   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,117   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,119   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,121   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,123   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,132   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,147   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,156   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,158   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,162   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,169   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,178   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,179   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,183   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,185   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,188   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-10-17T17:34:08,203   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,204   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,206   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,208   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,210   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,212   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,215   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,217   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,219   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,221   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,223   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,225   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,227   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,229   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,230   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,232   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,234   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,235   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,237   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,239   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,242   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,246   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,248   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,250   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,253   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,254   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,256   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,258   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,260   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,262   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,263   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,265   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,269   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,273   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,274   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,276   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,280   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,281   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,283   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,285   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,287   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,289   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,290   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,292   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,298   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,301   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,303   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,305   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,309   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,311   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,317   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,319   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,321   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,324   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,326   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,329   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,331   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,341   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,343   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,345   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T17:34:08,352   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T17:34:08,561   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,569   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,572   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,589   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,591   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,600   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,602   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T17:34:08,608   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,610   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,645   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,647   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,649   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,716   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T17:34:08,723   running install_egg_info
2023-10-17T17:34:08,730   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.4-py3.11.egg-info
2023-10-17T17:34:08,746   running install_scripts
2023-10-17T17:34:08,817   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.4.dist-info/WHEEL
2023-10-17T17:34:08,820   creating '/tmp/pip-wheel-1a8u1son/.tmp-ji1owelo/moleculekit-1.8.4-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-17T17:34:08,824   adding 'moleculekit/__init__.py'
2023-10-17T17:34:08,826   adding 'moleculekit/_version.py'
2023-10-17T17:34:08,828   adding 'moleculekit/align.py'
2023-10-17T17:34:09,164   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:09,179   adding 'moleculekit/bondguesser.py'
2023-10-17T17:34:09,423   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:09,433   adding 'moleculekit/config.py'
2023-10-17T17:34:09,434   adding 'moleculekit/dihedral.py'
2023-10-17T17:34:09,435   adding 'moleculekit/distance.py'
2023-10-17T17:34:09,733   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:09,746   adding 'moleculekit/home.py'
2023-10-17T17:34:09,747   adding 'moleculekit/logging.ini'
2023-10-17T17:34:09,761   adding 'moleculekit/molecule.py'
2023-10-17T17:34:09,990   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:10,000   adding 'moleculekit/opm.py'
2023-10-17T17:34:10,002   adding 'moleculekit/periodictable.py'
2023-10-17T17:34:10,003   adding 'moleculekit/pymolgraphics.py'
2023-10-17T17:34:10,005   adding 'moleculekit/rcsb.py'
2023-10-17T17:34:10,006   adding 'moleculekit/rdkitintegration.py'
2023-10-17T17:34:10,018   adding 'moleculekit/readers.py'
2023-10-17T17:34:10,614   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:10,641   adding 'moleculekit/util.py'
2023-10-17T17:34:10,642   adding 'moleculekit/version.py'
2023-10-17T17:34:10,644   adding 'moleculekit/viewer.py'
2023-10-17T17:34:10,645   adding 'moleculekit/vmd_wrapper'
2023-10-17T17:34:10,647   adding 'moleculekit/vmdgraphics.py'
2023-10-17T17:34:10,649   adding 'moleculekit/vmdviewer.py'
2023-10-17T17:34:10,884   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:10,898   adding 'moleculekit/writers.py'
2023-10-17T17:34:11,158   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:11,170   adding 'moleculekit/atomselect/__init__.py'
2023-10-17T17:34:11,172   adding 'moleculekit/atomselect/analyze.py'
2023-10-17T17:34:11,174   adding 'moleculekit/atomselect/atomselect.py'
2023-10-17T17:34:11,176   adding 'moleculekit/atomselect/languageparser.py'
2023-10-17T17:34:11,281   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-17T17:34:11,294   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-17T17:34:11,385   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-17T17:34:11,396   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-17T17:34:11,493   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-17T17:34:11,506   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-17T17:34:11,507   adding 'moleculekit/interactions/__init__.py'
2023-10-17T17:34:11,787   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:12,055   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:12,068   adding 'moleculekit/interactions/interactions.py'
2023-10-17T17:34:12,345   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:12,631   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-10-17T17:34:12,733   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-17T17:34:12,744   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-17T17:34:12,834   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-17T17:34:12,845   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-17T17:34:12,936   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-17T17:34:12,947   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-17T17:34:13,038   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-17T17:34:13,049   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-17T17:34:13,135   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-17T17:34:13,145   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-17T17:34:13,148   adding 'moleculekit/pdbx/__init__.py'
2023-10-17T17:34:13,151   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-17T17:34:13,154   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-17T17:34:13,156   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-17T17:34:13,158   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-17T17:34:13,160   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-17T17:34:13,161   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-17T17:34:13,162   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-17T17:34:13,163   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-17T17:34:13,165   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-17T17:34:13,166   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-17T17:34:13,168   adding 'moleculekit/ply/__init__.py'
2023-10-17T17:34:13,172   adding 'moleculekit/ply/lex.py'
2023-10-17T17:34:13,184   adding 'moleculekit/ply/yacc.py'
2023-10-17T17:34:13,186   adding 'moleculekit/projections/__init__.py'
2023-10-17T17:34:13,188   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-17T17:34:13,191   adding 'moleculekit/projections/metricdihedral.py'
2023-10-17T17:34:13,195   adding 'moleculekit/projections/metricdistance.py'
2023-10-17T17:34:13,197   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-17T17:34:13,199   adding 'moleculekit/projections/metricgyration.py'
2023-10-17T17:34:13,203   adding 'moleculekit/projections/metricplumed2.py'
2023-10-17T17:34:13,205   adding 'moleculekit/projections/metricrmsd.py'
2023-10-17T17:34:13,207   adding 'moleculekit/projections/metricsasa.py'
2023-10-17T17:34:13,208   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-17T17:34:13,210   adding 'moleculekit/projections/metricshell.py'
2023-10-17T17:34:13,212   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-17T17:34:13,213   adding 'moleculekit/projections/metrictmscore.py'
2023-10-17T17:34:13,214   adding 'moleculekit/projections/projection.py'
2023-10-17T17:34:13,216   adding 'moleculekit/projections/util.py'
2023-10-17T17:34:13,219   adding 'moleculekit/share/ALA.cif'
2023-10-17T17:34:13,220   adding 'moleculekit/share/backbone.cif'
2023-10-17T17:34:14,518   adding 'moleculekit/share/opm_sequences.json'
2023-10-17T17:34:14,628   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-17T17:34:14,632   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-17T17:34:14,634   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-17T17:34:14,635   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-17T17:34:14,636   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-17T17:34:14,637   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-17T17:34:14,639   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-17T17:34:14,640   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-17T17:34:14,641   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-17T17:34:14,642   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-17T17:34:14,643   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-17T17:34:14,645   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-17T17:34:14,646   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-17T17:34:14,647   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-17T17:34:14,648   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-17T17:34:14,649   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-17T17:34:14,650   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-17T17:34:14,651   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-17T17:34:14,652   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-17T17:34:14,653   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-17T17:34:14,654   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-17T17:34:14,656   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-17T17:34:14,657   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-17T17:34:14,658   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-17T17:34:14,659   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-17T17:34:14,661   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-17T17:34:14,662   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-17T17:34:14,663   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-17T17:34:14,664   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-17T17:34:14,665   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-17T17:34:14,666   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-17T17:34:14,668   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-17T17:34:14,669   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-17T17:34:14,670   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-17T17:34:14,671   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-17T17:34:14,672   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-17T17:34:14,674   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-17T17:34:14,675   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-17T17:34:14,676   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-17T17:34:14,677   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-17T17:34:14,679   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-17T17:34:14,680   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-17T17:34:14,681   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-17T17:34:14,682   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-17T17:34:14,684   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-17T17:34:14,685   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-17T17:34:14,686   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-17T17:34:14,687   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-17T17:34:14,688   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-17T17:34:14,690   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-17T17:34:14,691   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-17T17:34:14,692   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-17T17:34:14,693   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-17T17:34:14,695   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-17T17:34:14,696   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-17T17:34:14,697   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-17T17:34:14,698   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-17T17:34:14,700   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-17T17:34:14,701   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-17T17:34:14,702   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-17T17:34:14,703   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-17T17:34:14,704   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-17T17:34:14,705   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-17T17:34:14,707   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-17T17:34:14,708   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-17T17:34:14,709   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-17T17:34:14,710   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-17T17:34:14,711   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-17T17:34:14,713   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-17T17:34:14,714   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-17T17:34:14,715   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-17T17:34:14,716   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-17T17:34:14,717   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-17T17:34:14,719   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-17T17:34:14,720   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-17T17:34:14,721   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-17T17:34:14,722   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-17T17:34:14,724   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-17T17:34:14,725   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-17T17:34:14,726   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-17T17:34:14,727   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-17T17:34:14,728   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-17T17:34:14,729   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-17T17:34:14,731   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-17T17:34:14,732   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-17T17:34:14,733   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-17T17:34:14,734   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-17T17:34:14,736   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-17T17:34:14,737   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-17T17:34:14,739   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-17T17:34:14,740   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-17T17:34:14,741   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-17T17:34:14,743   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-17T17:34:14,744   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-17T17:34:14,745   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-17T17:34:14,746   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-17T17:34:14,748   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-17T17:34:14,749   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-17T17:34:14,750   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-17T17:34:14,751   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-17T17:34:14,753   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-17T17:34:14,754   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-17T17:34:14,756   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-17T17:34:14,757   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-17T17:34:14,758   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-17T17:34:14,759   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-17T17:34:14,760   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-17T17:34:14,762   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-17T17:34:14,763   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-17T17:34:14,764   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-17T17:34:14,765   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-17T17:34:14,767   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-17T17:34:14,768   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-17T17:34:14,769   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-17T17:34:14,770   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-17T17:34:14,771   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-17T17:34:14,772   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-17T17:34:14,774   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-17T17:34:14,775   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-17T17:34:14,776   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-17T17:34:14,777   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-17T17:34:14,778   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-17T17:34:14,779   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-17T17:34:14,781   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-17T17:34:14,782   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-17T17:34:14,783   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-17T17:34:14,784   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-17T17:34:14,786   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-17T17:34:14,787   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-17T17:34:14,788   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-17T17:34:14,790   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-17T17:34:14,791   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-17T17:34:14,792   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-17T17:34:14,793   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-17T17:34:14,794   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-17T17:34:14,796   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-17T17:34:14,797   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-17T17:34:14,798   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-17T17:34:14,799   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-17T17:34:14,800   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-17T17:34:14,802   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-17T17:34:14,803   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-17T17:34:14,804   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-17T17:34:14,805   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-17T17:34:14,806   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-17T17:34:14,808   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-17T17:34:14,809   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-17T17:34:14,810   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-17T17:34:14,811   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-17T17:34:14,813   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-17T17:34:14,814   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-17T17:34:14,815   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-17T17:34:14,816   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-17T17:34:14,817   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-17T17:34:14,819   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-17T17:34:14,820   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-17T17:34:14,821   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-17T17:34:14,823   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-17T17:34:14,824   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-17T17:34:14,825   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-17T17:34:14,826   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-17T17:34:14,827   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-17T17:34:14,829   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-17T17:34:14,830   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-17T17:34:14,831   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-17T17:34:14,832   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-17T17:34:14,834   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-17T17:34:14,835   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-17T17:34:14,836   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-17T17:34:14,837   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-17T17:34:14,838   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-17T17:34:14,839   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-17T17:34:14,841   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-17T17:34:14,842   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-17T17:34:14,843   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-17T17:34:14,844   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-17T17:34:14,846   adding 'moleculekit/smallmol/__init__.py'
2023-10-17T17:34:14,851   adding 'moleculekit/smallmol/smallmol.py'
2023-10-17T17:34:14,853   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-17T17:34:14,855   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-17T17:34:14,857   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-17T17:34:14,859   adding 'moleculekit/smallmol/util.py'
2023-10-17T17:34:14,860   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-17T17:34:14,862   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-17T17:34:14,863   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-17T17:34:14,865   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-17T17:34:14,954   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-17T17:34:14,965   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-17T17:34:14,966   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-17T17:34:14,968   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-17T17:34:14,985   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-17T17:34:14,989   adding 'moleculekit/tools/__init__.py'
2023-10-17T17:34:14,991   adding 'moleculekit/tools/atomtyper.py'
2023-10-17T17:34:14,993   adding 'moleculekit/tools/autosegment.py'
2023-10-17T17:34:14,995   adding 'moleculekit/tools/crystalpacking.py'
2023-10-17T17:34:14,998   adding 'moleculekit/tools/detect.py'
2023-10-17T17:34:15,000   adding 'moleculekit/tools/docking.py'
2023-10-17T17:34:15,003   adding 'moleculekit/tools/graphalignment.py'
2023-10-17T17:34:15,004   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-17T17:34:15,005   adding 'moleculekit/tools/moleculechecks.py'
2023-10-17T17:34:15,012   adding 'moleculekit/tools/preparation.py'
2023-10-17T17:34:15,014   adding 'moleculekit/tools/preparation_customres.py'
2023-10-17T17:34:15,016   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-17T17:34:15,019   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-17T17:34:15,021   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-17T17:34:15,022   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-17T17:34:15,110   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-17T17:34:15,120   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-17T17:34:15,209   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-17T17:34:15,220   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-17T17:34:15,221   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-17T17:34:15,224   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-17T17:34:15,226   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-17T17:34:15,227   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-17T17:34:15,234   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-17T17:34:15,236   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-17T17:34:15,238   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-17T17:34:15,240   adding 'moleculekit-1.8.4.dist-info/LICENSE'
2023-10-17T17:34:15,242   adding 'moleculekit-1.8.4.dist-info/METADATA'
2023-10-17T17:34:15,243   adding 'moleculekit-1.8.4.dist-info/WHEEL'
2023-10-17T17:34:15,244   adding 'moleculekit-1.8.4.dist-info/top_level.txt'
2023-10-17T17:34:15,248   adding 'moleculekit-1.8.4.dist-info/RECORD'
2023-10-17T17:34:15,383   removing build/bdist.linux-armv7l/wheel
2023-10-17T17:34:15,677   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-17T17:34:15,979   Created wheel for moleculekit: filename=moleculekit-1.8.4-cp311-cp311-linux_armv7l.whl size=12850024 sha256=80595e5496b482f9f33e8f60f1035b76b64fa155f33895fc1a17245ab6099dd0
2023-10-17T17:34:15,980   Stored in directory: /tmp/pip-ephem-wheel-cache-aar71pbl/wheels/b8/da/61/93734256e5d4e12a88074a9dd772eda23939c3e15c27c5c355
2023-10-17T17:34:16,003 Successfully built moleculekit
2023-10-17T17:34:16,294 Removed build tracker: '/tmp/pip-build-tracker-hhn2c55e'