2023-10-17T18:22:22,916 Created temporary directory: /tmp/pip-build-tracker-c2as3i3r
2023-10-17T18:22:22,918 Initialized build tracking at /tmp/pip-build-tracker-c2as3i3r
2023-10-17T18:22:22,918 Created build tracker: /tmp/pip-build-tracker-c2as3i3r
2023-10-17T18:22:22,918 Entered build tracker: /tmp/pip-build-tracker-c2as3i3r
2023-10-17T18:22:22,919 Created temporary directory: /tmp/pip-wheel-4q_r2z82
2023-10-17T18:22:22,923 Created temporary directory: /tmp/pip-ephem-wheel-cache-ki4j991m
2023-10-17T18:22:22,947 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T18:22:22,950 2 location(s) to search for versions of moleculekit:
2023-10-17T18:22:22,950 * https://pypi.org/simple/moleculekit/
2023-10-17T18:22:22,950 * https://www.piwheels.org/simple/moleculekit/
2023-10-17T18:22:22,951 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-17T18:22:22,951 Getting page https://pypi.org/simple/moleculekit/
2023-10-17T18:22:22,953 Found index url https://pypi.org/simple/
2023-10-17T18:22:23,011 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-17T18:22:23,050   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,051   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-17T18:22:23,051   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,051   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-17T18:22:23,051   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,052   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-17T18:22:23,052   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,052   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-17T18:22:23,052   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,053   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-17T18:22:23,053   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,053   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-17T18:22:23,053   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,054   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-17T18:22:23,054   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,054   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-17T18:22:23,054   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,055   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-17T18:22:23,055   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,055   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-17T18:22:23,055   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,055   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-17T18:22:23,056   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,056   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-17T18:22:23,056   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,056   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-17T18:22:23,057   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,057   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-17T18:22:23,057   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,057   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-17T18:22:23,058   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,058   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-17T18:22:23,058   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,058   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-17T18:22:23,059   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,059   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-17T18:22:23,059   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,059   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-17T18:22:23,059   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,060   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-17T18:22:23,060   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,060   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-17T18:22:23,060   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,061   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-17T18:22:23,061   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,061   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-17T18:22:23,061   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,062   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-17T18:22:23,062   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,062   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-17T18:22:23,062   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,063   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-17T18:22:23,063   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,063   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-17T18:22:23,063   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,063   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-17T18:22:23,064   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,064   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-17T18:22:23,064   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,064   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-17T18:22:23,065   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,065   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-17T18:22:23,065   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T18:22:23,065   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-17T18:22:23,066   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-17T18:22:23,108   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-10-17T18:22:23,109   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-10-17T18:22:23,109   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-17T18:22:23,110   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-17T18:22:23,110   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-17T18:22:23,111   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-17T18:22:23,112   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-17T18:22:23,112   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-17T18:22:23,113   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-17T18:22:23,113   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-17T18:22:23,114   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-17T18:22:23,114   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-17T18:22:23,115   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-17T18:22:23,115   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-17T18:22:23,116   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-17T18:22:23,116   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-10-17T18:22:23,117   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-10-17T18:22:23,117   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-10-17T18:22:23,118   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-10-17T18:22:23,118 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-17T18:22:23,119 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-17T18:22:23,120 Found index url https://www.piwheels.org/simple/
2023-10-17T18:22:23,195 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-17T18:22:23,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T18:22:23,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T18:22:23,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T18:22:23,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T18:22:23,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T18:22:23,318   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T18:22:23,318 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-17T18:22:23,318 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-17T18:22:23,360 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-17T18:22:23,378 Collecting moleculekit==1.8.3
2023-10-17T18:22:23,380   Created temporary directory: /tmp/pip-unpack-fvck4gsc
2023-10-17T18:22:23,427   Downloading moleculekit-1.8.3.tar.gz (6.2 MB)
2023-10-17T18:22:25,412   Added moleculekit==1.8.3 from https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz to build tracker '/tmp/pip-build-tracker-c2as3i3r'
2023-10-17T18:22:25,420   Created temporary directory: /tmp/pip-build-env-2lr9d234
2023-10-17T18:22:25,430   Installing build dependencies: started
2023-10-17T18:22:25,431   Running command pip subprocess to install build dependencies
2023-10-17T18:22:26,612   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-17T18:22:27,628   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T18:22:29,455   Collecting setuptools
2023-10-17T18:22:29,544     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-17T18:22:30,935   Collecting numpy>=1.18.5
2023-10-17T18:22:32,254     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.1-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-17T18:22:34,520   Collecting Cython>=0.29.21
2023-10-17T18:22:35,297     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.3-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-17T18:22:35,664   Collecting toml
2023-10-17T18:22:35,681     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-17T18:22:35,865   Collecting versioneer[toml]==0.28
2023-10-17T18:22:35,885     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-17T18:22:36,014   Collecting tomli (from versioneer[toml]==0.28)
2023-10-17T18:22:36,029     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-17T18:22:37,800   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-17T18:22:37,835     Creating /tmp/pip-build-env-2lr9d234/overlay/bin
2023-10-17T18:22:37,838     changing mode of /tmp/pip-build-env-2lr9d234/overlay/bin/versioneer to 755
2023-10-17T18:22:47,802     changing mode of /tmp/pip-build-env-2lr9d234/overlay/bin/f2py to 755
2023-10-17T18:22:51,255     changing mode of /tmp/pip-build-env-2lr9d234/overlay/bin/cygdb to 755
2023-10-17T18:22:51,257     changing mode of /tmp/pip-build-env-2lr9d234/overlay/bin/cython to 755
2023-10-17T18:22:51,259     changing mode of /tmp/pip-build-env-2lr9d234/overlay/bin/cythonize to 755
2023-10-17T18:22:51,283   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-17T18:22:51,284   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.1 which is incompatible.
2023-10-17T18:22:51,284   Successfully installed Cython-3.0.3 numpy-1.26.1 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2023-10-17T18:22:51,481   [notice] A new release of pip is available: 23.2.1 -> 23.3
2023-10-17T18:22:51,481   [notice] To update, run: python3 -m pip install --upgrade pip
2023-10-17T18:22:51,897   Installing build dependencies: finished with status 'done'
2023-10-17T18:22:51,901   Getting requirements to build wheel: started
2023-10-17T18:22:51,902   Running command Getting requirements to build wheel
2023-10-17T18:23:30,324   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T18:23:30,325   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T18:23:30,325   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T18:23:30,325   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T18:23:30,325   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
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2023-10-17T18:23:30,654   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
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2023-10-17T18:23:31,863   Getting requirements to build wheel: finished with status 'done'
2023-10-17T18:23:31,881   Installing backend dependencies: started
2023-10-17T18:23:31,882   Running command pip subprocess to install backend dependencies
2023-10-17T18:23:33,170   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-17T18:23:33,750   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T18:23:34,111   Collecting wheel
2023-10-17T18:23:34,131     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-17T18:23:35,487   Installing collected packages: wheel
2023-10-17T18:23:35,716     Creating /tmp/pip-build-env-2lr9d234/normal/bin
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2023-10-17T18:23:35,732   Successfully installed wheel-0.41.2

2023-10-17T18:23:35,926   [notice] A new release of pip is available: 23.2.1 -> 23.3
2023-10-17T18:23:35,926   [notice] To update, run: python3 -m pip install --upgrade pip
2023-10-17T18:23:36,141   Installing backend dependencies: finished with status 'done'
2023-10-17T18:23:36,143   Created temporary directory: /tmp/pip-modern-metadata-f9r7j9q2
2023-10-17T18:23:36,146   Preparing metadata (pyproject.toml): started
2023-10-17T18:23:36,147   Running command Preparing metadata (pyproject.toml)
2023-10-17T18:23:38,526   running dist_info
2023-10-17T18:23:38,528   creating /tmp/pip-modern-metadata-f9r7j9q2/moleculekit.egg-info
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2023-10-17T18:23:38,570   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,570   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,570   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,570   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,570   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,570   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,571   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,572   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,573   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,574   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,574   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,574   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:38,580   reading manifest file '/tmp/pip-modern-metadata-f9r7j9q2/moleculekit.egg-info/SOURCES.txt'
2023-10-17T18:23:38,582   reading manifest template 'MANIFEST.in'
2023-10-17T18:23:38,806   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T18:23:38,807   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T18:23:38,807   no previously-included directories found matching 'package'
2023-10-17T18:23:38,808   adding license file 'LICENSE'
2023-10-17T18:23:38,820   writing manifest file '/tmp/pip-modern-metadata-f9r7j9q2/moleculekit.egg-info/SOURCES.txt'
2023-10-17T18:23:38,828   creating '/tmp/pip-modern-metadata-f9r7j9q2/moleculekit-1.8.3.dist-info'
2023-10-17T18:23:39,026   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-17T18:23:39,032   Source in /tmp/pip-wheel-4q_r2z82/moleculekit_49b558f9a84a47fa9ff5fff1998494ff has version 1.8.3, which satisfies requirement moleculekit==1.8.3 from https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz
2023-10-17T18:23:39,033   Removed moleculekit==1.8.3 from https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz from build tracker '/tmp/pip-build-tracker-c2as3i3r'
2023-10-17T18:23:39,039 Created temporary directory: /tmp/pip-unpack-seq1qw3g
2023-10-17T18:23:39,040 Created temporary directory: /tmp/pip-unpack-5llt4cj9
2023-10-17T18:23:39,048 Building wheels for collected packages: moleculekit
2023-10-17T18:23:39,052   Created temporary directory: /tmp/pip-wheel-0u2zlg70
2023-10-17T18:23:39,053   Destination directory: /tmp/pip-wheel-0u2zlg70
2023-10-17T18:23:39,055   Building wheel for moleculekit (pyproject.toml): started
2023-10-17T18:23:39,056   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-17T18:23:41,510   running bdist_wheel
2023-10-17T18:23:41,527   running build
2023-10-17T18:23:41,527   running build_py
2023-10-17T18:23:41,535   creating build
2023-10-17T18:23:41,535   creating build/lib.linux-armv7l-cpython-39
2023-10-17T18:23:41,536   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,537   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,540   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,542   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,543   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,545   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,547   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,548   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,551   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,552   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,554   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,556   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,564   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,566   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,568   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,570   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,573   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,574   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,576   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,579   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,584   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,586   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:41,589   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,590   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,592   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,594   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,597   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,599   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,601   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,603   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,606   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,608   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,610   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,612   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,614   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,618   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,620   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,623   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T18:23:41,625   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T18:23:41,626   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T18:23:41,629   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T18:23:41,631   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T18:23:41,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T18:23:41,635   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T18:23:41,638   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T18:23:41,640   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T18:23:41,641   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T18:23:41,643   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T18:23:41,645   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T18:23:41,647   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T18:23:41,650   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-17T18:23:41,650   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-17T18:23:41,653   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,653   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,656   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,659   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,661   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,663   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,665   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T18:23:41,669   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,670   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,673   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,676   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,678   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,680   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,683   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,685   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,687   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,688   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,691   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,693   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,696   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,698   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T18:23:41,701   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T18:23:41,702   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T18:23:41,704   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T18:23:41,706   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T18:23:41,708   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T18:23:41,711   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T18:23:41,712   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T18:23:41,715   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T18:23:41,718   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T18:23:41,719   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T18:23:41,722   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-17T18:23:41,723   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-17T18:23:41,724   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-17T18:23:41,727   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T18:23:41,728   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T18:23:41,730   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T18:23:41,732   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T18:23:41,734   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T18:23:41,737   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-17T18:23:41,738   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-17T18:23:41,740   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-17T18:23:41,741   running egg_info
2023-10-17T18:23:41,747   writing moleculekit.egg-info/PKG-INFO
2023-10-17T18:23:41,750   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-17T18:23:41,751   writing requirements to moleculekit.egg-info/requires.txt
2023-10-17T18:23:41,752   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-17T18:23:41,765   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,766   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,766   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,766   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,766   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,766   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,766   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,767   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,768   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,769   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,770   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,771   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,772   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,773   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,773   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,773   dependency /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T18:23:41,779   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T18:23:41,788   reading manifest template 'MANIFEST.in'
2023-10-17T18:23:42,012   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T18:23:42,013   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T18:23:42,014   no previously-included directories found matching 'package'
2023-10-17T18:23:42,014   adding license file 'LICENSE'
2023-10-17T18:23:42,031   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T18:23:42,041   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-17T18:23:42,041   !!

2023-10-17T18:23:42,042           ********************************************************************************
2023-10-17T18:23:42,042           ############################
2023-10-17T18:23:42,042           # Package would be ignored #
2023-10-17T18:23:42,042           ############################
2023-10-17T18:23:42,042           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-17T18:23:42,042           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,042           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,043           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-17T18:23:42,043           to the `packages` configuration field.

2023-10-17T18:23:42,043           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,043           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,043           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,043           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,044           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,044           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-17T18:23:42,044           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-17T18:23:42,044           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,044           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,044           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,044           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,045           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,045           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,045                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,045                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,045                 directory, all directories are treated like packages.
2023-10-17T18:23:42,046           ********************************************************************************

2023-10-17T18:23:42,046   !!
2023-10-17T18:23:42,046     check.warn(importable)
2023-10-17T18:23:42,046   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-17T18:23:42,046   !!

2023-10-17T18:23:42,046           ********************************************************************************
2023-10-17T18:23:42,047           ############################
2023-10-17T18:23:42,047           # Package would be ignored #
2023-10-17T18:23:42,047           ############################
2023-10-17T18:23:42,047           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-17T18:23:42,047           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,047           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,047           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-17T18:23:42,047           to the `packages` configuration field.

2023-10-17T18:23:42,048           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,048           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,048           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,048           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,048           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,049           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-17T18:23:42,049           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-17T18:23:42,049           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,049           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,049           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,049           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,049           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,050           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,050                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,050                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,050                 directory, all directories are treated like packages.
2023-10-17T18:23:42,050           ********************************************************************************

2023-10-17T18:23:42,051   !!
2023-10-17T18:23:42,051     check.warn(importable)
2023-10-17T18:23:42,051   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-17T18:23:42,051   !!

2023-10-17T18:23:42,051           ********************************************************************************
2023-10-17T18:23:42,051           ############################
2023-10-17T18:23:42,051           # Package would be ignored #
2023-10-17T18:23:42,051           ############################
2023-10-17T18:23:42,052           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-17T18:23:42,052           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,052           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,052           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-17T18:23:42,052           to the `packages` configuration field.

2023-10-17T18:23:42,052           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,053           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,053           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,053           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,053           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,053           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-17T18:23:42,053           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-17T18:23:42,054           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,054           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,054           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,054           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,054           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,055           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,055                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,055                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,055                 directory, all directories are treated like packages.
2023-10-17T18:23:42,055           ********************************************************************************

2023-10-17T18:23:42,055   !!
2023-10-17T18:23:42,055     check.warn(importable)
2023-10-17T18:23:42,055   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-17T18:23:42,056   !!

2023-10-17T18:23:42,056           ********************************************************************************
2023-10-17T18:23:42,056           ############################
2023-10-17T18:23:42,056           # Package would be ignored #
2023-10-17T18:23:42,056           ############################
2023-10-17T18:23:42,056           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-17T18:23:42,056           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,057           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,057           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-17T18:23:42,057           to the `packages` configuration field.

2023-10-17T18:23:42,057           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,057           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,057           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,057           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,058           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,058           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-17T18:23:42,058           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-17T18:23:42,058           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,058           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,058           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,059           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,059           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,059           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,059                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,059                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,059                 directory, all directories are treated like packages.
2023-10-17T18:23:42,060           ********************************************************************************

2023-10-17T18:23:42,060   !!
2023-10-17T18:23:42,060     check.warn(importable)
2023-10-17T18:23:42,060   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-17T18:23:42,060   !!

2023-10-17T18:23:42,060           ********************************************************************************
2023-10-17T18:23:42,060           ############################
2023-10-17T18:23:42,061           # Package would be ignored #
2023-10-17T18:23:42,061           ############################
2023-10-17T18:23:42,061           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-17T18:23:42,061           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,061           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,061           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-17T18:23:42,061           to the `packages` configuration field.

2023-10-17T18:23:42,062           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,062           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,062           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,062           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,062           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,062           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-17T18:23:42,063           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-17T18:23:42,063           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,063           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,063           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,063           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,063           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,064           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,064                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,064                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,064                 directory, all directories are treated like packages.
2023-10-17T18:23:42,064           ********************************************************************************

2023-10-17T18:23:42,064   !!
2023-10-17T18:23:42,065     check.warn(importable)
2023-10-17T18:23:42,065   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-17T18:23:42,065   !!

2023-10-17T18:23:42,065           ********************************************************************************
2023-10-17T18:23:42,065           ############################
2023-10-17T18:23:42,065           # Package would be ignored #
2023-10-17T18:23:42,065           ############################
2023-10-17T18:23:42,065           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-17T18:23:42,066           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,066           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,066           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-17T18:23:42,066           to the `packages` configuration field.

2023-10-17T18:23:42,066           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,066           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,066           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,067           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,067           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,067           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-17T18:23:42,067           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-17T18:23:42,067           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,067           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,068           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,068           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,068           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,068           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,068                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,069                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,069                 directory, all directories are treated like packages.
2023-10-17T18:23:42,069           ********************************************************************************

2023-10-17T18:23:42,069   !!
2023-10-17T18:23:42,069     check.warn(importable)
2023-10-17T18:23:42,069   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-17T18:23:42,069   !!

2023-10-17T18:23:42,070           ********************************************************************************
2023-10-17T18:23:42,070           ############################
2023-10-17T18:23:42,070           # Package would be ignored #
2023-10-17T18:23:42,070           ############################
2023-10-17T18:23:42,070           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-17T18:23:42,070           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,070           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,070           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-17T18:23:42,071           to the `packages` configuration field.

2023-10-17T18:23:42,071           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,071           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,071           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,071           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,071           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,072           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-17T18:23:42,072           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-17T18:23:42,072           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,072           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,072           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,072           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,072           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,073           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,073                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,073                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,073                 directory, all directories are treated like packages.
2023-10-17T18:23:42,073           ********************************************************************************

2023-10-17T18:23:42,073   !!
2023-10-17T18:23:42,074     check.warn(importable)
2023-10-17T18:23:42,074   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-17T18:23:42,074   !!

2023-10-17T18:23:42,074           ********************************************************************************
2023-10-17T18:23:42,074           ############################
2023-10-17T18:23:42,074           # Package would be ignored #
2023-10-17T18:23:42,074           ############################
2023-10-17T18:23:42,074           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-17T18:23:42,075           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,075           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,075           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-17T18:23:42,075           to the `packages` configuration field.

2023-10-17T18:23:42,075           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,075           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,075           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,076           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,076           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,076           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-17T18:23:42,076           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-17T18:23:42,076           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,076           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,076           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,077           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,077           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,077           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,077                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,077                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,077                 directory, all directories are treated like packages.
2023-10-17T18:23:42,078           ********************************************************************************

2023-10-17T18:23:42,078   !!
2023-10-17T18:23:42,078     check.warn(importable)
2023-10-17T18:23:42,078   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-17T18:23:42,078   !!

2023-10-17T18:23:42,078           ********************************************************************************
2023-10-17T18:23:42,078           ############################
2023-10-17T18:23:42,079           # Package would be ignored #
2023-10-17T18:23:42,079           ############################
2023-10-17T18:23:42,079           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-17T18:23:42,079           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,079           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,079           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-17T18:23:42,079           to the `packages` configuration field.

2023-10-17T18:23:42,080           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,080           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,080           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,080           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,080           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,080           If you don't want 'moleculekit.share' to be distributed and are
2023-10-17T18:23:42,081           already explicitly excluding 'moleculekit.share' via
2023-10-17T18:23:42,081           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,081           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,081           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,081           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,081           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,082           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,082                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,082                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,082                 directory, all directories are treated like packages.
2023-10-17T18:23:42,082           ********************************************************************************

2023-10-17T18:23:42,082   !!
2023-10-17T18:23:42,083     check.warn(importable)
2023-10-17T18:23:42,083   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-17T18:23:42,083   !!

2023-10-17T18:23:42,083           ********************************************************************************
2023-10-17T18:23:42,083           ############################
2023-10-17T18:23:42,083           # Package would be ignored #
2023-10-17T18:23:42,083           ############################
2023-10-17T18:23:42,084           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-17T18:23:42,084           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,084           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,084           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-17T18:23:42,084           to the `packages` configuration field.

2023-10-17T18:23:42,084           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,085           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,085           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,085           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,085           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,085           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-17T18:23:42,086           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-17T18:23:42,086           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,086           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,086           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,086           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,086           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,087           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,087                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,087                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,087                 directory, all directories are treated like packages.
2023-10-17T18:23:42,087           ********************************************************************************

2023-10-17T18:23:42,088   !!
2023-10-17T18:23:42,088     check.warn(importable)
2023-10-17T18:23:42,088   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-17T18:23:42,088   !!

2023-10-17T18:23:42,088           ********************************************************************************
2023-10-17T18:23:42,088           ############################
2023-10-17T18:23:42,088           # Package would be ignored #
2023-10-17T18:23:42,089           ############################
2023-10-17T18:23:42,089           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-17T18:23:42,089           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,089           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,089           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-17T18:23:42,089           to the `packages` configuration field.

2023-10-17T18:23:42,090           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,090           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,090           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,090           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,090           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,090           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-17T18:23:42,091           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-17T18:23:42,091           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,091           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,091           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,091           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,091           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,092           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,092                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,092                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,092                 directory, all directories are treated like packages.
2023-10-17T18:23:42,092           ********************************************************************************

2023-10-17T18:23:42,092   !!
2023-10-17T18:23:42,093     check.warn(importable)
2023-10-17T18:23:42,093   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-17T18:23:42,093   !!

2023-10-17T18:23:42,093           ********************************************************************************
2023-10-17T18:23:42,093           ############################
2023-10-17T18:23:42,093           # Package would be ignored #
2023-10-17T18:23:42,093           ############################
2023-10-17T18:23:42,093           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-17T18:23:42,094           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,094           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,094           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-17T18:23:42,094           to the `packages` configuration field.

2023-10-17T18:23:42,094           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,095           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,095           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,096           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,096           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,097           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-17T18:23:42,097           already explicitly excluding 'moleculekit.tmalign' via
2023-10-17T18:23:42,097           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,097           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,097           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,097           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,098           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,098           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,098                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,098                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,098                 directory, all directories are treated like packages.
2023-10-17T18:23:42,098           ********************************************************************************

2023-10-17T18:23:42,099   !!
2023-10-17T18:23:42,099     check.warn(importable)
2023-10-17T18:23:42,099   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-17T18:23:42,099   !!

2023-10-17T18:23:42,099           ********************************************************************************
2023-10-17T18:23:42,099           ############################
2023-10-17T18:23:42,099           # Package would be ignored #
2023-10-17T18:23:42,100           ############################
2023-10-17T18:23:42,100           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-17T18:23:42,100           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,100           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,100           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-17T18:23:42,100           to the `packages` configuration field.

2023-10-17T18:23:42,101           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,101           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,101           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,101           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,101           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,102           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-17T18:23:42,102           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-17T18:23:42,102           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,102           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,102           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,103           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,103           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,103           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,103                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,103                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,104                 directory, all directories are treated like packages.
2023-10-17T18:23:42,104           ********************************************************************************

2023-10-17T18:23:42,104   !!
2023-10-17T18:23:42,104     check.warn(importable)
2023-10-17T18:23:42,104   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-17T18:23:42,104   !!

2023-10-17T18:23:42,105           ********************************************************************************
2023-10-17T18:23:42,105           ############################
2023-10-17T18:23:42,105           # Package would be ignored #
2023-10-17T18:23:42,105           ############################
2023-10-17T18:23:42,105           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-17T18:23:42,105           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,105           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,106           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-17T18:23:42,106           to the `packages` configuration field.

2023-10-17T18:23:42,106           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,106           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,106           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,106           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,107           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,107           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-17T18:23:42,107           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-17T18:23:42,107           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,107           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,107           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,108           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,108           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,108           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,108                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,108                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,109                 directory, all directories are treated like packages.
2023-10-17T18:23:42,109           ********************************************************************************

2023-10-17T18:23:42,109   !!
2023-10-17T18:23:42,109     check.warn(importable)
2023-10-17T18:23:42,109   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-17T18:23:42,109   !!

2023-10-17T18:23:42,110           ********************************************************************************
2023-10-17T18:23:42,110           ############################
2023-10-17T18:23:42,110           # Package would be ignored #
2023-10-17T18:23:42,110           ############################
2023-10-17T18:23:42,110           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-17T18:23:42,110           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,110           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,111           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-17T18:23:42,111           to the `packages` configuration field.

2023-10-17T18:23:42,111           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,111           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,111           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,111           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,112           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,112           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-17T18:23:42,112           already explicitly excluding 'moleculekit.wrapping' via
2023-10-17T18:23:42,112           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,112           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,112           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,113           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,113           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,113           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,113                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,113                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,114                 directory, all directories are treated like packages.
2023-10-17T18:23:42,114           ********************************************************************************

2023-10-17T18:23:42,114   !!
2023-10-17T18:23:42,114     check.warn(importable)
2023-10-17T18:23:42,114   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-17T18:23:42,114   !!

2023-10-17T18:23:42,114           ********************************************************************************
2023-10-17T18:23:42,115           ############################
2023-10-17T18:23:42,115           # Package would be ignored #
2023-10-17T18:23:42,115           ############################
2023-10-17T18:23:42,115           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-17T18:23:42,115           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,115           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,115           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-17T18:23:42,116           to the `packages` configuration field.

2023-10-17T18:23:42,116           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,116           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,116           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,116           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,117           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,117           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-17T18:23:42,117           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-17T18:23:42,117           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,117           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,117           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,117           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,118           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,118           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,118                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,118                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,118                 directory, all directories are treated like packages.
2023-10-17T18:23:42,118           ********************************************************************************

2023-10-17T18:23:42,119   !!
2023-10-17T18:23:42,119     check.warn(importable)
2023-10-17T18:23:42,119   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-17T18:23:42,119   !!

2023-10-17T18:23:42,119           ********************************************************************************
2023-10-17T18:23:42,119           ############################
2023-10-17T18:23:42,120           # Package would be ignored #
2023-10-17T18:23:42,120           ############################
2023-10-17T18:23:42,120           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-17T18:23:42,120           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,120           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,120           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-17T18:23:42,120           to the `packages` configuration field.

2023-10-17T18:23:42,121           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,121           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,121           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,122           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,123           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,125           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-17T18:23:42,125           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-17T18:23:42,125           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,125           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,125           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,125           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,126           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,126           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,126                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,126                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,126                 directory, all directories are treated like packages.
2023-10-17T18:23:42,126           ********************************************************************************

2023-10-17T18:23:42,127   !!
2023-10-17T18:23:42,127     check.warn(importable)
2023-10-17T18:23:42,127   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-17T18:23:42,127   !!

2023-10-17T18:23:42,127           ********************************************************************************
2023-10-17T18:23:42,127           ############################
2023-10-17T18:23:42,128           # Package would be ignored #
2023-10-17T18:23:42,128           ############################
2023-10-17T18:23:42,128           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-17T18:23:42,128           but it is absent from setuptools' `packages` configuration.

2023-10-17T18:23:42,128           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T18:23:42,128           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-17T18:23:42,129           to the `packages` configuration field.

2023-10-17T18:23:42,129           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T18:23:42,129           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T18:23:42,129           instead of `find_packages(...)`/`find:`).

2023-10-17T18:23:42,129           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T18:23:42,130           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T18:23:42,130           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-17T18:23:42,130           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-17T18:23:42,130           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T18:23:42,130           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T18:23:42,130           combination with a more fine grained `package-data` configuration.

2023-10-17T18:23:42,131           You can read more about "package data files" on setuptools documentation page:

2023-10-17T18:23:42,131           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T18:23:42,131           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T18:23:42,131                 even if it does not contain any `.py` files.
2023-10-17T18:23:42,131                 On the other hand, currently there is no concept of package data
2023-10-17T18:23:42,132                 directory, all directories are treated like packages.
2023-10-17T18:23:42,132           ********************************************************************************

2023-10-17T18:23:42,132   !!
2023-10-17T18:23:42,132     check.warn(importable)
2023-10-17T18:23:42,132   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:42,132   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:42,132   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T18:23:42,132   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T18:23:42,133   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T18:23:42,133   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T18:23:42,133   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T18:23:42,155   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T18:23:42,157   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T18:23:42,158   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T18:23:42,182   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T18:23:42,185   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T18:23:42,186   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T18:23:42,203   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T18:23:42,205   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T18:23:42,206   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T18:23:42,209   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T18:23:42,211   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T18:23:42,419   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-17T18:23:42,419   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-17T18:23:42,422   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-17T18:23:42,422   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,423   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,425   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,427   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,429   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,431   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,433   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,435   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,438   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,439   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,442   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,444   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,446   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,448   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,450   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,452   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,454   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,455   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,458   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,459   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,461   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,463   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,466   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,467   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,469   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,471   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,473   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,475   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,477   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,479   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,481   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,483   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,485   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,487   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,489   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,491   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,493   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,495   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,497   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,499   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,501   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,503   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,505   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,507   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,509   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,511   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,513   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,515   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,517   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,519   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,522   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,524   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,526   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,528   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,530   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,532   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,534   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,535   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,538   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,539   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,541   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,543   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,545   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,547   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,549   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,551   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,554   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,556   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,558   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,560   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,562   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,564   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,566   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,568   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,570   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,572   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,574   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,576   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,578   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,580   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,582   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,584   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,586   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,588   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,590   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,592   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,594   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,596   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,598   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,599   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,601   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,603   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,605   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,607   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,609   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,611   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,614   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,616   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,618   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,619   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,622   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,624   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,626   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,628   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,630   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,632   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,634   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,636   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,639   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,641   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,643   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,645   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,647   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,649   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,652   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,654   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,656   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,658   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,660   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,662   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,664   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,666   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,669   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,671   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,673   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,675   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,677   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,679   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,681   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,683   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,686   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,688   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,690   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,692   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,694   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,696   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,698   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,700   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,703   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,704   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,706   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,708   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,711   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,713   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,715   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,717   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,719   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,721   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,723   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,725   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,727   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,729   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,731   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,733   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,735   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,737   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,740   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,742   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,744   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,746   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,748   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,750   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,753   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,754   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,756   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,758   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,760   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,763   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,765   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,767   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,769   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,771   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,773   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,775   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,777   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,779   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T18:23:42,781   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T18:23:42,782   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T18:23:42,802   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T18:23:42,804   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T18:23:42,806   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-17T18:23:42,806   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-17T18:23:42,808   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-17T18:23:42,809   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-17T18:23:42,815   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T18:23:42,816   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T18:23:42,836   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T18:23:42,838   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T18:23:42,839   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T18:23:42,857   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T18:23:42,859   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T18:23:42,861   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T18:23:42,862   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T18:23:42,865   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T18:23:42,867   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T18:23:42,868   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T18:23:42,869   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T18:23:42,873   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T18:23:42,875   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T18:23:42,877   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T18:23:42,878   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T18:23:42,898   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T18:23:42,900   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T18:23:42,901   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T18:23:42,925   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T18:23:42,928   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T18:23:42,928   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T18:23:42,948   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T18:23:42,950   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T18:23:42,951   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T18:23:42,975   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T18:23:42,986   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-17T18:23:42,987   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.3'
2023-10-17T18:23:42,987   running build_ext
2023-10-17T18:23:42,998   building 'moleculekit.interactions.hbonds' extension
2023-10-17T18:23:42,998   creating build/temp.linux-armv7l-cpython-39
2023-10-17T18:23:42,999   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-17T18:23:43,000   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T18:23:43,000   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T18:23:43,001   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-17T18:23:43,292   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:23:43,292                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:23:43,292                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:23:43,293                    from moleculekit/interactions/hbonds/hbonds.cpp:1219:
2023-10-17T18:23:43,293   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:23:43,293      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:23:43,293         |  ^~~~~~~
2023-10-17T18:24:09,732   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:24:10,091   building 'moleculekit.interactions.pipi' extension
2023-10-17T18:24:10,092   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T18:24:10,094   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-17T18:24:10,363   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:24:10,363                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:24:10,363                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:24:10,364                    from moleculekit/interactions/pipi/pipi.cpp:1219:
2023-10-17T18:24:10,364   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:24:10,364      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:24:10,364         |  ^~~~~~~
2023-10-17T18:24:38,609   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:24:38,927   building 'moleculekit.interactions.cationpi' extension
2023-10-17T18:24:38,928   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T18:24:38,928   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-17T18:24:39,166   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:24:39,166                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:24:39,166                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:24:39,167                    from moleculekit/interactions/cationpi/cationpi.cpp:1219:
2023-10-17T18:24:39,167   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:24:39,167      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:24:39,167         |  ^~~~~~~
2023-10-17T18:25:07,199   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:25:07,519   building 'moleculekit.interactions.sigmahole' extension
2023-10-17T18:25:07,520   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T18:25:07,521   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-17T18:25:07,762   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:25:07,763                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:25:07,763                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:25:07,763                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1219:
2023-10-17T18:25:07,763   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:25:07,763      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:25:07,763         |  ^~~~~~~
2023-10-17T18:25:35,112   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:25:35,435   building 'moleculekit.wrapping' extension
2023-10-17T18:25:35,436   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T18:25:35,436   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-17T18:25:35,675   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:25:35,675                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:25:35,675                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:25:35,675                    from moleculekit/wrapping/wrapping.cpp:1219:
2023-10-17T18:25:35,676   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:25:35,676      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:25:35,676         |  ^~~~~~~
2023-10-17T18:25:59,396   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:25:59,606   building 'moleculekit.bondguesser_utils' extension
2023-10-17T18:25:59,607   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T18:25:59,608   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-17T18:25:59,847   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:25:59,847                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:25:59,847                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:25:59,847                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1219:
2023-10-17T18:25:59,847   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:25:59,847      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:25:59,848         |  ^~~~~~~
2023-10-17T18:26:01,389   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-17T18:26:01,389   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19759:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T18:26:01,389   19759 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-17T18:26:01,389         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T18:26:01,390   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T18:26:01,390   19771 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-17T18:26:01,390         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T18:26:01,390   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T18:26:01,390   19783 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-17T18:26:01,390         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T18:26:01,391   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19822:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,391   19822 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T18:26:01,391         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,391   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19861:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,391   19861 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T18:26:01,391         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19900:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,392   19900 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,392         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19939:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,392   19939 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T18:26:01,392         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,392   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19945:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,393   19945 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T18:26:01,393         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,393   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19986:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,393   19986 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T18:26:01,393         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,393   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19992:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,393   19992 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,393         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20033:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,394   20033 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T18:26:01,394         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20039:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,394   20039 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,394         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,394   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20080:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,395   20080 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T18:26:01,395         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,395   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20133:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,395   20133 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,395         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,395   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20180:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,396   20180 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,396         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,396   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20221:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,396   20221 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T18:26:01,396         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,396   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20227:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,396   20227 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T18:26:01,396         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,397   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,397   20233 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,397         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,397   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20280:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,397   20280 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T18:26:01,397         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,397   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20286:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,398   20286 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,398         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20327:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,398   20327 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T18:26:01,398         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,398   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,398   20339 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,399         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,399   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20392:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T18:26:01,399   20392 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T18:26:01,399         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,417   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-17T18:26:01,418   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21014:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T18:26:01,418   21014 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-17T18:26:01,418         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-17T18:26:01,418   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21051:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T18:26:01,418   21051 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-17T18:26:01,418         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-17T18:26:24,482   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:26:24,781   building 'moleculekit.atomselect_utils' extension
2023-10-17T18:26:24,782   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T18:26:24,782   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-17T18:26:25,024   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:26:25,024                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:26:25,024                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:26:25,024                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1236:
2023-10-17T18:26:25,025   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:26:25,025      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:26:25,025         |  ^~~~~~~
2023-10-17T18:26:26,750   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-17T18:26:26,750   moleculekit/atomselect_utils/atomselect_utils.cpp:23713:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T18:26:26,751   23713 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-17T18:26:26,751         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-17T18:26:26,756   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-17T18:26:26,756   moleculekit/atomselect_utils/atomselect_utils.cpp:23965:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T18:26:26,756   23965 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-17T18:26:26,756         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T18:26:26,761   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-17T18:26:26,762   moleculekit/atomselect_utils/atomselect_utils.cpp:24232:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T18:26:26,762   24232 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-17T18:26:26,762         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T18:26:57,323   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:26:57,648   building 'moleculekit.distance_utils' extension
2023-10-17T18:26:57,648   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T18:26:57,649   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-17T18:26:57,887   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:26:57,888                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:26:57,888                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:26:57,888                    from moleculekit/distance_utils/distance_utils.cpp:1219:
2023-10-17T18:26:57,888   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:26:57,888      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:26:57,888         |  ^~~~~~~
2023-10-17T18:27:30,308   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:27:30,630   building 'moleculekit.occupancy_utils' extension
2023-10-17T18:27:30,630   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T18:27:30,631   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-17T18:27:30,874   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:27:30,875                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:27:30,875                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:27:30,875                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1219:
2023-10-17T18:27:30,875   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:27:30,875      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:27:30,875         |  ^~~~~~~
2023-10-17T18:27:53,912   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:27:54,120   building 'moleculekit.xtc' extension
2023-10-17T18:27:54,121   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T18:27:54,121   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T18:27:54,123   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-17T18:27:54,361   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,362      66 |  "OK",
2023-10-17T18:27:54,362         |  ^~~~
2023-10-17T18:27:54,362   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,362      67 |  "Header",
2023-10-17T18:27:54,362         |  ^~~~~~~~
2023-10-17T18:27:54,363   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,363      68 |  "String",
2023-10-17T18:27:54,363         |  ^~~~~~~~
2023-10-17T18:27:54,363   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,363      69 |  "Double",
2023-10-17T18:27:54,364         |  ^~~~~~~~
2023-10-17T18:27:54,364   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,364      70 |  "Integer",
2023-10-17T18:27:54,364         |  ^~~~~~~~~
2023-10-17T18:27:54,364   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,364      71 |  "Float",
2023-10-17T18:27:54,365         |  ^~~~~~~
2023-10-17T18:27:54,365   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,365      72 |  "Unsigned integer",
2023-10-17T18:27:54,365         |  ^~~~~~~~~~~~~~~~~~
2023-10-17T18:27:54,365   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,365      73 |  "Compressed 3D coordinate",
2023-10-17T18:27:54,366         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:27:54,366   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,366      74 |  "Closing file",
2023-10-17T18:27:54,366         |  ^~~~~~~~~~~~~~
2023-10-17T18:27:54,366   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,366      75 |  "Magic number",
2023-10-17T18:27:54,366         |  ^~~~~~~~~~~~~~
2023-10-17T18:27:54,367   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,367      76 |  "Not enough memory",
2023-10-17T18:27:54,367         |  ^~~~~~~~~~~~~~~~~~~
2023-10-17T18:27:54,367   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,367      77 |  "End of file",
2023-10-17T18:27:54,367         |  ^~~~~~~~~~~~~
2023-10-17T18:27:54,368   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T18:27:54,368      78 |  "File not found"
2023-10-17T18:27:54,368         |  ^~~~~~~~~~~~~~~~
2023-10-17T18:27:54,376   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-17T18:27:54,376   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,376     459 |     while (size >= num && num_of_bits < 32)
2023-10-17T18:27:54,376         |            ~~~~~^~~~~~
2023-10-17T18:27:54,378   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-17T18:27:54,378   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,378     505 |     while (bytes[num_of_bytes] >= num)
2023-10-17T18:27:54,378         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-17T18:27:54,381   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-17T18:27:54,381   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,381     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-17T18:27:54,381         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-17T18:27:54,381   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,382     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-17T18:27:54,382         |               ~~^~~~~~~~~~~~~~
2023-10-17T18:27:54,382   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,382     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-17T18:27:54,383         |               ~~^~~~~~~~~~~~~~~~
2023-10-17T18:27:54,384   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-17T18:27:54,384   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,384     664 |   if (lastbits < num_of_bits)
2023-10-17T18:27:54,384         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-17T18:27:54,388   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-17T18:27:54,388   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,389     785 |  if(size3>xfp->buf1size)
2023-10-17T18:27:54,389         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T18:27:54,391   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,391     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T18:27:54,391         |                   ^
2023-10-17T18:27:54,394   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,394     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T18:27:54,394         |        ~~~~~~~~~^~~~~~~~
2023-10-17T18:27:54,395   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,395     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T18:27:54,395         |        ~~~~~~~~~^~~~~~~~
2023-10-17T18:27:54,396   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,396     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T18:27:54,396         |        ~~~~~~~~~^~~~~~~~
2023-10-17T18:27:54,396   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,397     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T18:27:54,397         |        ~~~~~~~~~^~~~~~~~
2023-10-17T18:27:54,397   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,397     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T18:27:54,397         |        ~~~~~~~~~^~~~~~~~
2023-10-17T18:27:54,398   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,398     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T18:27:54,398         |        ~~~~~~~~~^~~~~~~~
2023-10-17T18:27:54,399   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-17T18:27:54,399     756 |  int smallidx,  minidx, maxidx;
2023-10-17T18:27:54,399         |                 ^~~~~~
2023-10-17T18:27:54,400   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-17T18:27:54,400     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-17T18:27:54,400         |                         ^~~~~~
2023-10-17T18:27:54,400   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-17T18:27:54,400     763 |  int errval=1;
2023-10-17T18:27:54,400         |      ^~~~~~
2023-10-17T18:27:54,403   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-17T18:27:54,403   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,404    1011 |  if(size3>xfp->buf1size)
2023-10-17T18:27:54,404         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T18:27:54,406   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,406    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T18:27:54,406         |                     ~~~~~~~~^~~~~~~
2023-10-17T18:27:54,407   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,407    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T18:27:54,407         |                    ~~~~~~~~^~~~~~~
2023-10-17T18:27:54,407   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,408    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T18:27:54,408         |                    ~~~~~~~~^~~~~~~
2023-10-17T18:27:54,409   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,409    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-17T18:27:54,409         |                  ^
2023-10-17T18:27:54,410   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,410    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T18:27:54,410         |                   ^
2023-10-17T18:27:54,413   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,414    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-17T18:27:54,414         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:27:54,414   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-17T18:27:54,414    1001 |  int errval;
2023-10-17T18:27:54,414         |      ^~~~~~
2023-10-17T18:27:54,416   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-17T18:27:54,417   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,417    1316 |  if(size3>xfp->buf1size)
2023-10-17T18:27:54,417         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T18:27:54,418   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,419    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T18:27:54,419         |                   ^
2023-10-17T18:27:54,421   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-17T18:27:54,422    1289 |  int smallidx,  maxidx, minidx;
2023-10-17T18:27:54,422         |                         ^~~~~~
2023-10-17T18:27:54,422   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-17T18:27:54,422    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-17T18:27:54,422         |                         ^~~~~~
2023-10-17T18:27:54,422   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-17T18:27:54,422    1297 |  int errval=1;
2023-10-17T18:27:54,422         |      ^~~~~~
2023-10-17T18:27:54,424   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-17T18:27:54,424   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,424    1513 |  if(size3>xfp->buf1size) {
2023-10-17T18:27:54,424         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T18:27:54,428   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,428    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-17T18:27:54,428         |                  ^
2023-10-17T18:27:54,429   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T18:27:54,429    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T18:27:54,429         |                   ^
2023-10-17T18:27:54,432   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T18:27:54,432    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-17T18:27:54,433         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T18:27:54,433   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-17T18:27:54,433    1504 |  int errval=1;
2023-10-17T18:27:54,433         |      ^~~~~~
2023-10-17T18:27:56,659   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-17T18:27:56,919   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-17T18:27:57,480   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-17T18:27:57,481   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-17T18:27:57,481     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-17T18:27:57,481         |      ^~~
2023-10-17T18:27:57,487   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-17T18:27:57,487   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-17T18:27:57,487     418 |  int nf3 = nframes * 3;
2023-10-17T18:27:57,488         |      ^~~
2023-10-17T18:27:57,492   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-17T18:27:57,492   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-17T18:27:57,492     491 |  int reading_index = 0;
2023-10-17T18:27:57,492         |      ^~~~~~~~~~~~~
2023-10-17T18:27:57,492   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-17T18:27:57,493     492 |  int writing_index = 0;
2023-10-17T18:27:57,493         |      ^~~~~~~~~~~~~
2023-10-17T18:27:58,251   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-17T18:27:58,701   In file included from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T18:27:58,702                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T18:27:58,702                    from /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T18:27:58,702                    from moleculekit/xtc_utils/xtc.cpp:1223:
2023-10-17T18:27:58,702   /tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T18:27:58,702      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T18:27:58,702         |  ^~~~~~~
2023-10-17T18:28:18,776   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:28:19,097   building 'moleculekit.tmalign' extension
2023-10-17T18:28:19,098   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T18:28:19,098   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-17T18:28:19,099   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-17T18:28:48,470   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2lr9d234/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-17T18:29:06,882   In file included from /usr/include/c++/10/vector:72,
2023-10-17T18:29:06,882                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-17T18:29:06,882   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-17T18:29:06,882   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-17T18:29:06,882     426 |       vector<_Tp, _Alloc>::
2023-10-17T18:29:06,882         |       ^~~~~~~~~~~~~~~~~~~
2023-10-17T18:29:07,459   In file included from /usr/include/c++/10/vector:67,
2023-10-17T18:29:07,459                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-17T18:29:07,459   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-17T18:29:07,459   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T18:29:07,459    1198 |    _M_realloc_insert(end(), __x);
2023-10-17T18:29:07,459         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T18:29:07,460   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T18:29:07,460    1198 |    _M_realloc_insert(end(), __x);
2023-10-17T18:29:07,460         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T18:29:07,462   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T18:29:07,462    1198 |    _M_realloc_insert(end(), __x);
2023-10-17T18:29:07,462         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T18:29:09,918   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-17T18:29:10,361   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-17T18:29:10,362   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.3'
2023-10-17T18:29:10,362   installing to build/bdist.linux-armv7l/wheel
2023-10-17T18:29:10,362   running install
2023-10-17T18:29:10,387   running install_lib
2023-10-17T18:29:10,393   creating build/bdist.linux-armv7l
2023-10-17T18:29:10,394   creating build/bdist.linux-armv7l/wheel
2023-10-17T18:29:10,396   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:10,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:10,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:10,402   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T18:29:10,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T18:29:10,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T18:29:10,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:10,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:10,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:10,457   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T18:29:10,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T18:29:10,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T18:29:10,484   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T18:29:10,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T18:29:10,679   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-17T18:29:10,683   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,775   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,822   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,961   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T18:29:10,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T18:29:10,997   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T18:29:10,999   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-17T18:29:11,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-17T18:29:11,002   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T18:29:11,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,040   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,042   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T18:29:11,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T18:29:11,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T18:29:11,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T18:29:11,053   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T18:29:11,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T18:29:11,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T18:29:11,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T18:29:11,081   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T18:29:11,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T18:29:11,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T18:29:11,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T18:29:11,088   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T18:29:11,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T18:29:11,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T18:29:11,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T18:29:11,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,117   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,118   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T18:29:11,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T18:29:11,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T18:29:11,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,152   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T18:29:11,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T18:29:11,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T18:29:11,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,246   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T18:29:11,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T18:29:11,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T18:29:11,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T18:29:11,296   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T18:29:11,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T18:29:11,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T18:29:11,322   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T18:29:11,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T18:29:11,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T18:29:11,346   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T18:29:11,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T18:29:11,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T18:29:11,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T18:29:11,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T18:29:11,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,363   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-17T18:29:11,365   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T18:29:11,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T18:29:11,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T18:29:11,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T18:29:11,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T18:29:11,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-17T18:29:11,375   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T18:29:11,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T18:29:11,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T18:29:11,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T18:29:11,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T18:29:11,385   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T18:29:11,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T18:29:11,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T18:29:11,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,394   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,401   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T18:29:11,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T18:29:11,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T18:29:11,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T18:29:11,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T18:29:11,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T18:29:11,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,419   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T18:29:11,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T18:29:11,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T18:29:11,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,449   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,471   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T18:29:11,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T18:29:11,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T18:29:11,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T18:29:11,489   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T18:29:11,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T18:29:11,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T18:29:11,514   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-17T18:29:11,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-17T18:29:11,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T18:29:11,519   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-17T18:29:11,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-17T18:29:11,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,549   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T18:29:11,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T18:29:11,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T18:29:11,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T18:29:11,726   running install_egg_info
2023-10-17T18:29:11,734   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.3-py3.9.egg-info
2023-10-17T18:29:11,750   running install_scripts
2023-10-17T18:29:11,801   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.3.dist-info/WHEEL
2023-10-17T18:29:11,804   creating '/tmp/pip-wheel-0u2zlg70/.tmp-6kphze7o/moleculekit-1.8.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-17T18:29:11,807   adding 'moleculekit/__init__.py'
2023-10-17T18:29:11,808   adding 'moleculekit/_version.py'
2023-10-17T18:29:11,810   adding 'moleculekit/align.py'
2023-10-17T18:29:12,124   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:12,136   adding 'moleculekit/bondguesser.py'
2023-10-17T18:29:12,376   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:12,385   adding 'moleculekit/config.py'
2023-10-17T18:29:12,387   adding 'moleculekit/dihedral.py'
2023-10-17T18:29:12,388   adding 'moleculekit/distance.py'
2023-10-17T18:29:12,695   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:12,706   adding 'moleculekit/home.py'
2023-10-17T18:29:12,707   adding 'moleculekit/logging.ini'
2023-10-17T18:29:12,721   adding 'moleculekit/molecule.py'
2023-10-17T18:29:12,945   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:12,954   adding 'moleculekit/opm.py'
2023-10-17T18:29:12,956   adding 'moleculekit/periodictable.py'
2023-10-17T18:29:12,957   adding 'moleculekit/pymolgraphics.py'
2023-10-17T18:29:12,958   adding 'moleculekit/rcsb.py'
2023-10-17T18:29:12,960   adding 'moleculekit/rdkitintegration.py'
2023-10-17T18:29:12,972   adding 'moleculekit/readers.py'
2023-10-17T18:29:13,574   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:13,598   adding 'moleculekit/util.py'
2023-10-17T18:29:13,600   adding 'moleculekit/version.py'
2023-10-17T18:29:13,602   adding 'moleculekit/viewer.py'
2023-10-17T18:29:13,603   adding 'moleculekit/vmd_wrapper'
2023-10-17T18:29:13,605   adding 'moleculekit/vmdgraphics.py'
2023-10-17T18:29:13,607   adding 'moleculekit/vmdviewer.py'
2023-10-17T18:29:13,839   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:13,851   adding 'moleculekit/writers.py'
2023-10-17T18:29:14,116   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:14,126   adding 'moleculekit/atomselect/__init__.py'
2023-10-17T18:29:14,127   adding 'moleculekit/atomselect/analyze.py'
2023-10-17T18:29:14,129   adding 'moleculekit/atomselect/atomselect.py'
2023-10-17T18:29:14,132   adding 'moleculekit/atomselect/languageparser.py'
2023-10-17T18:29:14,236   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-17T18:29:14,247   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-17T18:29:14,338   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-17T18:29:14,347   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-17T18:29:14,446   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-17T18:29:14,456   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-17T18:29:14,458   adding 'moleculekit/interactions/__init__.py'
2023-10-17T18:29:14,744   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:15,014   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:15,025   adding 'moleculekit/interactions/interactions.py'
2023-10-17T18:29:15,303   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:15,589   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T18:29:15,690   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-17T18:29:15,699   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-17T18:29:15,790   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-17T18:29:15,799   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-17T18:29:15,891   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-17T18:29:15,900   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-17T18:29:15,992   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-17T18:29:16,002   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-17T18:29:16,090   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-17T18:29:16,098   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-17T18:29:16,100   adding 'moleculekit/pdbx/__init__.py'
2023-10-17T18:29:16,103   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-17T18:29:16,106   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-17T18:29:16,108   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-17T18:29:16,110   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-17T18:29:16,112   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-17T18:29:16,113   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-17T18:29:16,115   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-17T18:29:16,116   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-17T18:29:16,118   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-17T18:29:16,119   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-17T18:29:16,121   adding 'moleculekit/ply/__init__.py'
2023-10-17T18:29:16,125   adding 'moleculekit/ply/lex.py'
2023-10-17T18:29:16,137   adding 'moleculekit/ply/yacc.py'
2023-10-17T18:29:16,139   adding 'moleculekit/projections/__init__.py'
2023-10-17T18:29:16,141   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-17T18:29:16,145   adding 'moleculekit/projections/metricdihedral.py'
2023-10-17T18:29:16,149   adding 'moleculekit/projections/metricdistance.py'
2023-10-17T18:29:16,151   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-17T18:29:16,153   adding 'moleculekit/projections/metricgyration.py'
2023-10-17T18:29:16,156   adding 'moleculekit/projections/metricplumed2.py'
2023-10-17T18:29:16,158   adding 'moleculekit/projections/metricrmsd.py'
2023-10-17T18:29:16,160   adding 'moleculekit/projections/metricsasa.py'
2023-10-17T18:29:16,162   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-17T18:29:16,164   adding 'moleculekit/projections/metricshell.py'
2023-10-17T18:29:16,166   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-17T18:29:16,167   adding 'moleculekit/projections/metrictmscore.py'
2023-10-17T18:29:16,168   adding 'moleculekit/projections/projection.py'
2023-10-17T18:29:16,174   adding 'moleculekit/projections/util.py'
2023-10-17T18:29:16,176   adding 'moleculekit/share/ALA.cif'
2023-10-17T18:29:16,177   adding 'moleculekit/share/backbone.cif'
2023-10-17T18:29:17,483   adding 'moleculekit/share/opm_sequences.json'
2023-10-17T18:29:17,568   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-17T18:29:17,573   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-17T18:29:17,574   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-17T18:29:17,576   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-17T18:29:17,577   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-17T18:29:17,578   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-17T18:29:17,580   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-17T18:29:17,581   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-17T18:29:17,582   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-17T18:29:17,583   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-17T18:29:17,585   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-17T18:29:17,586   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-17T18:29:17,587   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-17T18:29:17,588   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-17T18:29:17,590   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-17T18:29:17,591   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-17T18:29:17,592   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-17T18:29:17,594   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-17T18:29:17,595   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-17T18:29:17,596   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-17T18:29:17,597   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-17T18:29:17,599   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-17T18:29:17,600   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-17T18:29:17,601   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-17T18:29:17,603   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-17T18:29:17,604   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-17T18:29:17,605   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-17T18:29:17,607   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-17T18:29:17,608   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-17T18:29:17,609   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-17T18:29:17,611   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-17T18:29:17,612   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-17T18:29:17,613   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-17T18:29:17,614   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-17T18:29:17,615   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-17T18:29:17,617   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-17T18:29:17,618   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-17T18:29:17,620   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-17T18:29:17,621   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-17T18:29:17,622   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-17T18:29:17,623   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-17T18:29:17,625   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-17T18:29:17,626   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-17T18:29:17,627   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-17T18:29:17,629   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-17T18:29:17,630   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-17T18:29:17,631   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-17T18:29:17,632   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-17T18:29:17,634   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-17T18:29:17,635   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-17T18:29:17,636   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-17T18:29:17,638   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-17T18:29:17,639   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-17T18:29:17,640   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-17T18:29:17,641   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-17T18:29:17,643   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-17T18:29:17,644   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-17T18:29:17,645   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-17T18:29:17,646   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-17T18:29:17,648   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-17T18:29:17,649   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-17T18:29:17,650   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-17T18:29:17,651   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-17T18:29:17,653   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-17T18:29:17,654   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-17T18:29:17,655   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-17T18:29:17,657   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-17T18:29:17,658   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-17T18:29:17,659   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-17T18:29:17,660   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-17T18:29:17,662   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-17T18:29:17,663   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-17T18:29:17,664   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-17T18:29:17,665   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-17T18:29:17,666   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-17T18:29:17,668   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-17T18:29:17,669   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-17T18:29:17,670   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-17T18:29:17,672   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-17T18:29:17,673   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-17T18:29:17,674   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-17T18:29:17,675   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-17T18:29:17,677   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-17T18:29:17,678   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-17T18:29:17,679   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-17T18:29:17,681   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-17T18:29:17,682   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-17T18:29:17,683   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-17T18:29:17,684   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-17T18:29:17,686   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-17T18:29:17,687   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-17T18:29:17,688   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-17T18:29:17,690   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-17T18:29:17,691   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-17T18:29:17,692   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-17T18:29:17,694   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-17T18:29:17,695   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-17T18:29:17,696   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-17T18:29:17,697   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-17T18:29:17,699   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-17T18:29:17,700   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-17T18:29:17,701   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-17T18:29:17,702   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-17T18:29:17,704   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-17T18:29:17,705   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-17T18:29:17,706   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-17T18:29:17,708   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-17T18:29:17,709   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-17T18:29:17,710   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-17T18:29:17,712   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-17T18:29:17,713   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-17T18:29:17,714   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-17T18:29:17,715   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-17T18:29:17,717   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-17T18:29:17,718   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-17T18:29:17,719   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-17T18:29:17,720   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-17T18:29:17,722   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-17T18:29:17,723   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-17T18:29:17,724   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-17T18:29:17,726   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-17T18:29:17,727   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-17T18:29:17,728   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-17T18:29:17,729   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-17T18:29:17,731   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-17T18:29:17,734   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-17T18:29:17,735   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-17T18:29:17,736   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-17T18:29:17,738   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-17T18:29:17,739   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-17T18:29:17,740   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-17T18:29:17,742   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-17T18:29:17,743   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-17T18:29:17,744   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-17T18:29:17,745   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-17T18:29:17,747   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-17T18:29:17,748   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-17T18:29:17,749   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-17T18:29:17,750   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-17T18:29:17,752   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-17T18:29:17,753   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-17T18:29:17,754   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-17T18:29:17,755   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-17T18:29:17,757   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-17T18:29:17,758   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-17T18:29:17,759   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-17T18:29:17,760   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-17T18:29:17,762   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-17T18:29:17,763   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-17T18:29:17,764   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-17T18:29:17,766   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-17T18:29:17,767   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-17T18:29:17,768   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-17T18:29:17,769   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-17T18:29:17,771   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-17T18:29:17,772   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-17T18:29:17,774   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-17T18:29:17,775   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-17T18:29:17,776   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-17T18:29:17,778   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-17T18:29:17,779   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-17T18:29:17,780   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-17T18:29:17,781   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-17T18:29:17,783   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-17T18:29:17,784   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-17T18:29:17,785   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-17T18:29:17,786   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-17T18:29:17,788   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-17T18:29:17,789   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-17T18:29:17,790   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-17T18:29:17,791   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-17T18:29:17,793   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-17T18:29:17,794   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-17T18:29:17,795   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-17T18:29:17,796   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-17T18:29:17,798   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-17T18:29:17,800   adding 'moleculekit/smallmol/__init__.py'
2023-10-17T18:29:17,805   adding 'moleculekit/smallmol/smallmol.py'
2023-10-17T18:29:17,807   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-17T18:29:17,809   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-17T18:29:17,811   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-17T18:29:17,813   adding 'moleculekit/smallmol/util.py'
2023-10-17T18:29:17,815   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-17T18:29:17,817   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-17T18:29:17,818   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-17T18:29:17,820   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-17T18:29:17,910   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-17T18:29:17,919   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-17T18:29:17,920   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-17T18:29:17,922   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-17T18:29:17,939   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-17T18:29:17,942   adding 'moleculekit/tools/__init__.py'
2023-10-17T18:29:17,945   adding 'moleculekit/tools/atomtyper.py'
2023-10-17T18:29:17,947   adding 'moleculekit/tools/autosegment.py'
2023-10-17T18:29:17,949   adding 'moleculekit/tools/crystalpacking.py'
2023-10-17T18:29:17,953   adding 'moleculekit/tools/detect.py'
2023-10-17T18:29:17,955   adding 'moleculekit/tools/docking.py'
2023-10-17T18:29:17,956   adding 'moleculekit/tools/graphalignment.py'
2023-10-17T18:29:17,958   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-17T18:29:17,960   adding 'moleculekit/tools/moleculechecks.py'
2023-10-17T18:29:17,967   adding 'moleculekit/tools/preparation.py'
2023-10-17T18:29:17,969   adding 'moleculekit/tools/preparation_customres.py'
2023-10-17T18:29:17,971   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-17T18:29:17,974   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-17T18:29:17,977   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-17T18:29:17,978   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-17T18:29:18,066   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-17T18:29:18,075   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-17T18:29:18,164   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-17T18:29:18,173   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-17T18:29:18,174   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-17T18:29:18,177   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-17T18:29:18,179   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-17T18:29:18,180   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-17T18:29:18,187   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-17T18:29:18,189   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-17T18:29:18,191   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-17T18:29:18,194   adding 'moleculekit-1.8.3.dist-info/LICENSE'
2023-10-17T18:29:18,195   adding 'moleculekit-1.8.3.dist-info/METADATA'
2023-10-17T18:29:18,196   adding 'moleculekit-1.8.3.dist-info/WHEEL'
2023-10-17T18:29:18,197   adding 'moleculekit-1.8.3.dist-info/top_level.txt'
2023-10-17T18:29:18,202   adding 'moleculekit-1.8.3.dist-info/RECORD'
2023-10-17T18:29:18,356   removing build/bdist.linux-armv7l/wheel
2023-10-17T18:29:18,622   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-17T18:29:18,951   Created wheel for moleculekit: filename=moleculekit-1.8.3-cp39-cp39-linux_armv7l.whl size=12562417 sha256=569a4d257b3bc966f3beab4da38afd0204cdb97732b075871cabcd4119443008
2023-10-17T18:29:18,952   Stored in directory: /tmp/pip-ephem-wheel-cache-ki4j991m/wheels/3f/e9/ae/0849a8831651a5ad7b60a04737803f6a69ab3f977171d3c5a5
2023-10-17T18:29:18,980 Successfully built moleculekit
2023-10-17T18:29:19,298 Removed build tracker: '/tmp/pip-build-tracker-c2as3i3r'