2023-10-17T19:41:21,993 Created temporary directory: /tmp/pip-build-tracker-7a2eqqc3
2023-10-17T19:41:21,995 Initialized build tracking at /tmp/pip-build-tracker-7a2eqqc3
2023-10-17T19:41:21,995 Created build tracker: /tmp/pip-build-tracker-7a2eqqc3
2023-10-17T19:41:21,995 Entered build tracker: /tmp/pip-build-tracker-7a2eqqc3
2023-10-17T19:41:21,995 Created temporary directory: /tmp/pip-wheel-jlaxs06y
2023-10-17T19:41:22,000 Created temporary directory: /tmp/pip-ephem-wheel-cache-_yl8ribb
2023-10-17T19:41:22,024 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T19:41:22,028 2 location(s) to search for versions of moleculekit:
2023-10-17T19:41:22,028 * https://pypi.org/simple/moleculekit/
2023-10-17T19:41:22,028 * https://www.piwheels.org/simple/moleculekit/
2023-10-17T19:41:22,028 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-10-17T19:41:22,029 Getting page https://pypi.org/simple/moleculekit/
2023-10-17T19:41:22,030 Found index url https://pypi.org/simple/
2023-10-17T19:41:22,087 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-10-17T19:41:22,126   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,126   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-10-17T19:41:22,127   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,127   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-10-17T19:41:22,127   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,127   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-10-17T19:41:22,128   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,128   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-10-17T19:41:22,128   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,128   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-10-17T19:41:22,129   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,129   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-10-17T19:41:22,129   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,129   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-10-17T19:41:22,130   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,130   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-10-17T19:41:22,130   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,130   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-10-17T19:41:22,131   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,131   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-10-17T19:41:22,131   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,131   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-10-17T19:41:22,132   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,132   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-10-17T19:41:22,132   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,132   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-10-17T19:41:22,133   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,133   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-10-17T19:41:22,133   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,133   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-10-17T19:41:22,133   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,134   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-10-17T19:41:22,134   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,134   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-10-17T19:41:22,134   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,135   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-10-17T19:41:22,135   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,135   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-10-17T19:41:22,135   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,135   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-10-17T19:41:22,136   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,136   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-10-17T19:41:22,136   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,136   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-10-17T19:41:22,137   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,137   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-10-17T19:41:22,137   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,137   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-10-17T19:41:22,138   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,138   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-10-17T19:41:22,138   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,138   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-10-17T19:41:22,138   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,139   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-10-17T19:41:22,139   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,139   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-10-17T19:41:22,139   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,140   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-10-17T19:41:22,140   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,140   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-10-17T19:41:22,140   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,141   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-10-17T19:41:22,141   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-10-17T19:41:22,141   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-10-17T19:41:22,141   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-10-17T19:41:22,185   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-10-17T19:41:22,185   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-10-17T19:41:22,186   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-10-17T19:41:22,186   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-10-17T19:41:22,187   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-10-17T19:41:22,187   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-10-17T19:41:22,188   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-10-17T19:41:22,188   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-10-17T19:41:22,189   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-10-17T19:41:22,189   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-10-17T19:41:22,190   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-10-17T19:41:22,190   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-10-17T19:41:22,191   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-10-17T19:41:22,192   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-10-17T19:41:22,192   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-10-17T19:41:22,193   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-10-17T19:41:22,193   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-10-17T19:41:22,194 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-10-17T19:41:22,194 Getting page https://www.piwheels.org/simple/moleculekit/
2023-10-17T19:41:22,195 Found index url https://www.piwheels.org/simple/
2023-10-17T19:41:22,263 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-10-17T19:41:22,357   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T19:41:22,358   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T19:41:22,359   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T19:41:22,359   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,359   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,360   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,360   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,360   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,360   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,360   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,361   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,362   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,363   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T19:41:22,363   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,363   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,363   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,364   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,364   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,364   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,364   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,364   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,365   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,366   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,367   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,367   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,367   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,367   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,367   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,368   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,369   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,369   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,369   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,369   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,369   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,370   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,370   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,370   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,370   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,370   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,371   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,372   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,372   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,372   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,372   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,372   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,373   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,373   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,373   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,373   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,373   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,374   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,375   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,375   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
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2023-10-17T19:41:22,384   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-10-17T19:41:22,384 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-10-17T19:41:22,384 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-10-17T19:41:22,426 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-10-17T19:41:22,444 Collecting moleculekit==1.8.4
2023-10-17T19:41:22,446   Created temporary directory: /tmp/pip-unpack-tx3w7mcb
2023-10-17T19:41:22,497   Downloading moleculekit-1.8.4.tar.gz (6.2 MB)
2023-10-17T19:41:24,606   Added moleculekit==1.8.4 from https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz to build tracker '/tmp/pip-build-tracker-7a2eqqc3'
2023-10-17T19:41:24,614   Created temporary directory: /tmp/pip-build-env-w17i6b4s
2023-10-17T19:41:24,624   Installing build dependencies: started
2023-10-17T19:41:24,625   Running command pip subprocess to install build dependencies
2023-10-17T19:41:25,768   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-17T19:41:26,296   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T19:41:27,875   Collecting setuptools
2023-10-17T19:41:27,955     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-17T19:41:29,310   Collecting numpy>=1.18.5
2023-10-17T19:41:30,655     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.1-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-10-17T19:41:32,862   Collecting Cython>=0.29.21
2023-10-17T19:41:33,645     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.3-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-10-17T19:41:34,000   Collecting toml
2023-10-17T19:41:34,016     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-10-17T19:41:34,195   Collecting versioneer[toml]==0.28
2023-10-17T19:41:34,217     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-10-17T19:41:34,371   Collecting tomli (from versioneer[toml]==0.28)
2023-10-17T19:41:34,387     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-10-17T19:41:36,145   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-10-17T19:41:36,181     Creating /tmp/pip-build-env-w17i6b4s/overlay/bin
2023-10-17T19:41:36,183     changing mode of /tmp/pip-build-env-w17i6b4s/overlay/bin/versioneer to 755
2023-10-17T19:41:46,074     changing mode of /tmp/pip-build-env-w17i6b4s/overlay/bin/f2py to 755
2023-10-17T19:41:49,503     changing mode of /tmp/pip-build-env-w17i6b4s/overlay/bin/cygdb to 755
2023-10-17T19:41:49,505     changing mode of /tmp/pip-build-env-w17i6b4s/overlay/bin/cython to 755
2023-10-17T19:41:49,507     changing mode of /tmp/pip-build-env-w17i6b4s/overlay/bin/cythonize to 755
2023-10-17T19:41:49,533   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-10-17T19:41:49,533   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.1 which is incompatible.
2023-10-17T19:41:49,534   Successfully installed Cython-3.0.3 numpy-1.26.1 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2023-10-17T19:41:49,732   [notice] A new release of pip is available: 23.2.1 -> 23.3
2023-10-17T19:41:49,732   [notice] To update, run: python3 -m pip install --upgrade pip
2023-10-17T19:41:50,149   Installing build dependencies: finished with status 'done'
2023-10-17T19:41:50,154   Getting requirements to build wheel: started
2023-10-17T19:41:50,155   Running command Getting requirements to build wheel
2023-10-17T19:42:28,894   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,894   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,894   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-10-17T19:42:28,895   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-10-17T19:42:28,896   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-10-17T19:42:28,896   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-10-17T19:42:28,896   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-10-17T19:42:28,896   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-10-17T19:42:28,896   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-10-17T19:42:28,896   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-10-17T19:42:28,896   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-10-17T19:42:28,896   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-10-17T19:42:28,896   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-10-17T19:42:28,897   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-10-17T19:42:28,897   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-10-17T19:42:29,205   running egg_info
2023-10-17T19:42:29,212   writing moleculekit.egg-info/PKG-INFO
2023-10-17T19:42:29,216   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-17T19:42:29,219   writing requirements to moleculekit.egg-info/requires.txt
2023-10-17T19:42:29,221   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-17T19:42:29,249   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,249   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,250   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,250   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,250   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,251   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,251   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,252   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,252   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,252   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,253   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,253   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,253   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,254   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,254   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,254   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,255   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,255   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,255   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,256   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,256   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,256   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,257   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,257   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,258   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,258   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,258   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,259   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,259   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,259   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,260   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,260   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,260   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,261   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,261   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,261   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,262   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,262   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,262   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,263   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,263   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,263   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,264   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,264   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,264   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,265   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,265   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,265   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,266   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,266   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,267   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,268   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,268   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,268   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,269   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:29,277   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:29,317   reading manifest template 'MANIFEST.in'
2023-10-17T19:42:29,555   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T19:42:29,557   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T19:42:29,558   no previously-included directories found matching 'package'
2023-10-17T19:42:29,559   adding license file 'LICENSE'
2023-10-17T19:42:29,576   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:30,521   Getting requirements to build wheel: finished with status 'done'
2023-10-17T19:42:30,537   Installing backend dependencies: started
2023-10-17T19:42:30,538   Running command pip subprocess to install backend dependencies
2023-10-17T19:42:31,789   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-10-17T19:42:32,371   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-17T19:42:32,965   Collecting wheel
2023-10-17T19:42:32,985     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-17T19:42:34,323   Installing collected packages: wheel
2023-10-17T19:42:34,817     Creating /tmp/pip-build-env-w17i6b4s/normal/bin
2023-10-17T19:42:34,820     changing mode of /tmp/pip-build-env-w17i6b4s/normal/bin/wheel to 755
2023-10-17T19:42:34,834   Successfully installed wheel-0.41.2

2023-10-17T19:42:35,035   [notice] A new release of pip is available: 23.2.1 -> 23.3
2023-10-17T19:42:35,035   [notice] To update, run: python3 -m pip install --upgrade pip
2023-10-17T19:42:35,723   Installing backend dependencies: finished with status 'done'
2023-10-17T19:42:35,725   Created temporary directory: /tmp/pip-modern-metadata-xlu6hhxd
2023-10-17T19:42:35,729   Preparing metadata (pyproject.toml): started
2023-10-17T19:42:35,730   Running command Preparing metadata (pyproject.toml)
2023-10-17T19:42:38,082   running dist_info
2023-10-17T19:42:38,084   creating /tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info
2023-10-17T19:42:38,090   writing /tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/PKG-INFO
2023-10-17T19:42:38,094   writing dependency_links to /tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/dependency_links.txt
2023-10-17T19:42:38,096   writing requirements to /tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/requires.txt
2023-10-17T19:42:38,097   writing top-level names to /tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/top_level.txt
2023-10-17T19:42:38,099   writing manifest file '/tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:38,123   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,124   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,124   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,124   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,124   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,124   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,125   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,126   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,127   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,128   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,129   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,130   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,131   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,131   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:38,137   reading manifest file '/tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:38,139   reading manifest template 'MANIFEST.in'
2023-10-17T19:42:38,374   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T19:42:38,375   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T19:42:38,376   no previously-included directories found matching 'package'
2023-10-17T19:42:38,376   adding license file 'LICENSE'
2023-10-17T19:42:38,388   writing manifest file '/tmp/pip-modern-metadata-xlu6hhxd/moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:38,396   creating '/tmp/pip-modern-metadata-xlu6hhxd/moleculekit-1.8.4.dist-info'
2023-10-17T19:42:38,593   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-17T19:42:38,600   Source in /tmp/pip-wheel-jlaxs06y/moleculekit_599cd4fd1238438db9316c6810ab4e3e has version 1.8.4, which satisfies requirement moleculekit==1.8.4 from https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz
2023-10-17T19:42:38,601   Removed moleculekit==1.8.4 from https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz from build tracker '/tmp/pip-build-tracker-7a2eqqc3'
2023-10-17T19:42:38,606 Created temporary directory: /tmp/pip-unpack-h44l4b1i
2023-10-17T19:42:38,607 Created temporary directory: /tmp/pip-unpack-wtkxex0d
2023-10-17T19:42:38,615 Building wheels for collected packages: moleculekit
2023-10-17T19:42:38,619   Created temporary directory: /tmp/pip-wheel-p7ma9alk
2023-10-17T19:42:38,620   Destination directory: /tmp/pip-wheel-p7ma9alk
2023-10-17T19:42:38,622   Building wheel for moleculekit (pyproject.toml): started
2023-10-17T19:42:38,623   Running command Building wheel for moleculekit (pyproject.toml)
2023-10-17T19:42:40,869   running bdist_wheel
2023-10-17T19:42:40,885   running build
2023-10-17T19:42:40,885   running build_py
2023-10-17T19:42:40,892   creating build
2023-10-17T19:42:40,893   creating build/lib.linux-armv7l-cpython-39
2023-10-17T19:42:40,894   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,895   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,897   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,899   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,901   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,903   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,905   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,907   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,910   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,912   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,914   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,916   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,921   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,923   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,925   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,927   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,929   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,931   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,933   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,936   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,941   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,943   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:40,946   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,948   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,950   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,952   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,955   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,957   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,961   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,964   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,967   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,969   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,971   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,973   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,976   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,978   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,981   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,984   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-10-17T19:42:40,986   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T19:42:40,987   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T19:42:40,992   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T19:42:40,994   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-10-17T19:42:40,997   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T19:42:40,999   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T19:42:41,002   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T19:42:41,004   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T19:42:41,005   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T19:42:41,008   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T19:42:41,009   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T19:42:41,012   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-10-17T19:42:41,015   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-17T19:42:41,016   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-10-17T19:42:41,018   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,019   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,022   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,024   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,026   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,029   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,031   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-10-17T19:42:41,035   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,036   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,040   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,042   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,045   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,047   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,050   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,053   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,055   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,056   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,059   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,061   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,064   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,066   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-10-17T19:42:41,070   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T19:42:41,071   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T19:42:41,073   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T19:42:41,075   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T19:42:41,077   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-10-17T19:42:41,080   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T19:42:41,081   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T19:42:41,084   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T19:42:41,087   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T19:42:41,089   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-10-17T19:42:41,092   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-17T19:42:41,093   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-17T19:42:41,095   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-10-17T19:42:41,098   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T19:42:41,099   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T19:42:41,101   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T19:42:41,103   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T19:42:41,105   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-10-17T19:42:41,108   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-17T19:42:41,109   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-17T19:42:41,112   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-10-17T19:42:41,113   running egg_info
2023-10-17T19:42:41,119   writing moleculekit.egg-info/PKG-INFO
2023-10-17T19:42:41,123   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-10-17T19:42:41,125   writing requirements to moleculekit.egg-info/requires.txt
2023-10-17T19:42:41,126   writing top-level names to moleculekit.egg-info/top_level.txt
2023-10-17T19:42:41,139   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,140   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,140   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,141   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,141   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,141   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,142   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,142   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,143   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,143   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,143   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,144   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,144   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,144   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,145   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,145   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,145   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,146   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,146   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,146   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,147   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,147   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,147   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,148   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,148   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,148   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,149   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,149   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,150   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,150   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,150   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,151   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,151   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,151   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,152   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,152   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,152   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,153   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,153   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,154   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,154   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,154   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,155   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,155   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,155   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,156   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,156   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,156   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,157   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,157   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,158   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,158   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,159   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,159   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,159   dependency /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-10-17T19:42:41,166   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:41,175   reading manifest template 'MANIFEST.in'
2023-10-17T19:42:41,412   no previously-included directories found matching 'moleculekit/test-data'
2023-10-17T19:42:41,414   no previously-included directories found matching 'moleculekit/tests'
2023-10-17T19:42:41,416   no previously-included directories found matching 'package'
2023-10-17T19:42:41,416   adding license file 'LICENSE'
2023-10-17T19:42:41,437   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-10-17T19:42:41,448   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-10-17T19:42:41,448   !!

2023-10-17T19:42:41,448           ********************************************************************************
2023-10-17T19:42:41,448           ############################
2023-10-17T19:42:41,448           # Package would be ignored #
2023-10-17T19:42:41,449           ############################
2023-10-17T19:42:41,449           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-10-17T19:42:41,449           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,449           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,449           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-10-17T19:42:41,449           to the `packages` configuration field.

2023-10-17T19:42:41,449           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,450           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,450           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,450           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,450           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,450           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-10-17T19:42:41,451           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-10-17T19:42:41,451           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,451           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,451           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,452           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,452           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,452           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,452                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,452                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,453                 directory, all directories are treated like packages.
2023-10-17T19:42:41,453           ********************************************************************************

2023-10-17T19:42:41,453   !!
2023-10-17T19:42:41,453     check.warn(importable)
2023-10-17T19:42:41,453   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-10-17T19:42:41,453   !!

2023-10-17T19:42:41,454           ********************************************************************************
2023-10-17T19:42:41,454           ############################
2023-10-17T19:42:41,454           # Package would be ignored #
2023-10-17T19:42:41,454           ############################
2023-10-17T19:42:41,454           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-10-17T19:42:41,454           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,454           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,455           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-10-17T19:42:41,455           to the `packages` configuration field.

2023-10-17T19:42:41,455           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,455           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,455           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,455           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,456           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,456           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-10-17T19:42:41,456           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-10-17T19:42:41,456           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,456           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,456           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,457           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,457           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,457           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,457                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,457                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,458                 directory, all directories are treated like packages.
2023-10-17T19:42:41,458           ********************************************************************************

2023-10-17T19:42:41,458   !!
2023-10-17T19:42:41,458     check.warn(importable)
2023-10-17T19:42:41,458   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-10-17T19:42:41,458   !!

2023-10-17T19:42:41,458           ********************************************************************************
2023-10-17T19:42:41,459           ############################
2023-10-17T19:42:41,459           # Package would be ignored #
2023-10-17T19:42:41,459           ############################
2023-10-17T19:42:41,459           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-10-17T19:42:41,459           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,459           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,459           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-10-17T19:42:41,459           to the `packages` configuration field.

2023-10-17T19:42:41,460           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,460           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,460           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,460           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,460           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,461           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-10-17T19:42:41,461           already explicitly excluding 'moleculekit.distance_utils' via
2023-10-17T19:42:41,461           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,461           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,461           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,461           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,462           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,462           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,462                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,462                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,462                 directory, all directories are treated like packages.
2023-10-17T19:42:41,462           ********************************************************************************

2023-10-17T19:42:41,463   !!
2023-10-17T19:42:41,463     check.warn(importable)
2023-10-17T19:42:41,463   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-10-17T19:42:41,463   !!

2023-10-17T19:42:41,463           ********************************************************************************
2023-10-17T19:42:41,463           ############################
2023-10-17T19:42:41,463           # Package would be ignored #
2023-10-17T19:42:41,463           ############################
2023-10-17T19:42:41,464           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-10-17T19:42:41,464           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,464           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,464           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-10-17T19:42:41,464           to the `packages` configuration field.

2023-10-17T19:42:41,464           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,464           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,465           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,465           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,465           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,465           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-10-17T19:42:41,465           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-10-17T19:42:41,465           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,466           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,466           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,466           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,466           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,466           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,467                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,467                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,467                 directory, all directories are treated like packages.
2023-10-17T19:42:41,467           ********************************************************************************

2023-10-17T19:42:41,467   !!
2023-10-17T19:42:41,467     check.warn(importable)
2023-10-17T19:42:41,467   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-10-17T19:42:41,467   !!

2023-10-17T19:42:41,468           ********************************************************************************
2023-10-17T19:42:41,468           ############################
2023-10-17T19:42:41,468           # Package would be ignored #
2023-10-17T19:42:41,468           ############################
2023-10-17T19:42:41,468           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-10-17T19:42:41,468           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,469           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,469           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-10-17T19:42:41,469           to the `packages` configuration field.

2023-10-17T19:42:41,469           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,469           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,469           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,469           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,470           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,470           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-10-17T19:42:41,470           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-10-17T19:42:41,470           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,470           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,470           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,471           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,471           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,471           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,471                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,471                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,472                 directory, all directories are treated like packages.
2023-10-17T19:42:41,472           ********************************************************************************

2023-10-17T19:42:41,472   !!
2023-10-17T19:42:41,472     check.warn(importable)
2023-10-17T19:42:41,472   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-10-17T19:42:41,472   !!

2023-10-17T19:42:41,473           ********************************************************************************
2023-10-17T19:42:41,473           ############################
2023-10-17T19:42:41,473           # Package would be ignored #
2023-10-17T19:42:41,473           ############################
2023-10-17T19:42:41,473           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-10-17T19:42:41,473           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,473           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,473           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-10-17T19:42:41,474           to the `packages` configuration field.

2023-10-17T19:42:41,474           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,474           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,474           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,474           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,474           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,475           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-10-17T19:42:41,475           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-10-17T19:42:41,475           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,475           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,475           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,475           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,476           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,476           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,476                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,476                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,476                 directory, all directories are treated like packages.
2023-10-17T19:42:41,476           ********************************************************************************

2023-10-17T19:42:41,477   !!
2023-10-17T19:42:41,477     check.warn(importable)
2023-10-17T19:42:41,477   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-10-17T19:42:41,477   !!

2023-10-17T19:42:41,477           ********************************************************************************
2023-10-17T19:42:41,477           ############################
2023-10-17T19:42:41,477           # Package would be ignored #
2023-10-17T19:42:41,478           ############################
2023-10-17T19:42:41,478           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-10-17T19:42:41,478           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,478           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,478           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-10-17T19:42:41,478           to the `packages` configuration field.

2023-10-17T19:42:41,478           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,479           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,479           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,479           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,479           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,479           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-10-17T19:42:41,479           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-10-17T19:42:41,480           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,480           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,480           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,480           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,480           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,481           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,481                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,481                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,481                 directory, all directories are treated like packages.
2023-10-17T19:42:41,481           ********************************************************************************

2023-10-17T19:42:41,481   !!
2023-10-17T19:42:41,481     check.warn(importable)
2023-10-17T19:42:41,481   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-10-17T19:42:41,482   !!

2023-10-17T19:42:41,482           ********************************************************************************
2023-10-17T19:42:41,482           ############################
2023-10-17T19:42:41,482           # Package would be ignored #
2023-10-17T19:42:41,482           ############################
2023-10-17T19:42:41,482           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-10-17T19:42:41,482           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,483           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,483           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-10-17T19:42:41,483           to the `packages` configuration field.

2023-10-17T19:42:41,483           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,483           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,483           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,483           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,484           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,484           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-10-17T19:42:41,484           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-10-17T19:42:41,484           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,484           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,484           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,484           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,485           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,485           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,485                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,485                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,485                 directory, all directories are treated like packages.
2023-10-17T19:42:41,485           ********************************************************************************

2023-10-17T19:42:41,486   !!
2023-10-17T19:42:41,486     check.warn(importable)
2023-10-17T19:42:41,486   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-10-17T19:42:41,486   !!

2023-10-17T19:42:41,486           ********************************************************************************
2023-10-17T19:42:41,486           ############################
2023-10-17T19:42:41,486           # Package would be ignored #
2023-10-17T19:42:41,487           ############################
2023-10-17T19:42:41,487           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-10-17T19:42:41,487           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,487           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,487           package, please make sure that 'moleculekit.share' is explicitly added
2023-10-17T19:42:41,487           to the `packages` configuration field.

2023-10-17T19:42:41,487           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,488           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,488           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,488           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,488           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,488           If you don't want 'moleculekit.share' to be distributed and are
2023-10-17T19:42:41,488           already explicitly excluding 'moleculekit.share' via
2023-10-17T19:42:41,489           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,489           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,489           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,489           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,489           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,490           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,490                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,490                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,490                 directory, all directories are treated like packages.
2023-10-17T19:42:41,490           ********************************************************************************

2023-10-17T19:42:41,490   !!
2023-10-17T19:42:41,490     check.warn(importable)
2023-10-17T19:42:41,491   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-10-17T19:42:41,491   !!

2023-10-17T19:42:41,491           ********************************************************************************
2023-10-17T19:42:41,491           ############################
2023-10-17T19:42:41,491           # Package would be ignored #
2023-10-17T19:42:41,491           ############################
2023-10-17T19:42:41,491           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-10-17T19:42:41,491           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,492           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,492           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-10-17T19:42:41,492           to the `packages` configuration field.

2023-10-17T19:42:41,492           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,493           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,493           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,493           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,493           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,494           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-10-17T19:42:41,494           already explicitly excluding 'moleculekit.share.atomselect' via
2023-10-17T19:42:41,494           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,494           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,494           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,495           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,495           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,496           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,496                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,496                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,496                 directory, all directories are treated like packages.
2023-10-17T19:42:41,496           ********************************************************************************

2023-10-17T19:42:41,497   !!
2023-10-17T19:42:41,497     check.warn(importable)
2023-10-17T19:42:41,497   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-10-17T19:42:41,497   !!

2023-10-17T19:42:41,497           ********************************************************************************
2023-10-17T19:42:41,497           ############################
2023-10-17T19:42:41,498           # Package would be ignored #
2023-10-17T19:42:41,498           ############################
2023-10-17T19:42:41,498           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-10-17T19:42:41,498           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,498           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,498           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-10-17T19:42:41,499           to the `packages` configuration field.

2023-10-17T19:42:41,499           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,499           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,499           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,499           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,500           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,500           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-10-17T19:42:41,500           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-10-17T19:42:41,500           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,500           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,500           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,501           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,501           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,501           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,501                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,501                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,501                 directory, all directories are treated like packages.
2023-10-17T19:42:41,502           ********************************************************************************

2023-10-17T19:42:41,502   !!
2023-10-17T19:42:41,502     check.warn(importable)
2023-10-17T19:42:41,502   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-10-17T19:42:41,502   !!

2023-10-17T19:42:41,502           ********************************************************************************
2023-10-17T19:42:41,503           ############################
2023-10-17T19:42:41,503           # Package would be ignored #
2023-10-17T19:42:41,503           ############################
2023-10-17T19:42:41,503           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-10-17T19:42:41,503           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,503           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,503           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-10-17T19:42:41,503           to the `packages` configuration field.

2023-10-17T19:42:41,504           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,504           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,504           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,506           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,507           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,507           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-10-17T19:42:41,507           already explicitly excluding 'moleculekit.tmalign' via
2023-10-17T19:42:41,507           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,507           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,508           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,508           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,508           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,509           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,509                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,509                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,509                 directory, all directories are treated like packages.
2023-10-17T19:42:41,509           ********************************************************************************

2023-10-17T19:42:41,509   !!
2023-10-17T19:42:41,509     check.warn(importable)
2023-10-17T19:42:41,510   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-10-17T19:42:41,510   !!

2023-10-17T19:42:41,510           ********************************************************************************
2023-10-17T19:42:41,510           ############################
2023-10-17T19:42:41,510           # Package would be ignored #
2023-10-17T19:42:41,511           ############################
2023-10-17T19:42:41,511           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-10-17T19:42:41,511           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,511           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,511           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-10-17T19:42:41,511           to the `packages` configuration field.

2023-10-17T19:42:41,512           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,512           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,512           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,512           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,513           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,513           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-10-17T19:42:41,513           already explicitly excluding 'moleculekit.tmalign.include' via
2023-10-17T19:42:41,513           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,513           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,513           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,514           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,514           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,514           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,515                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,515                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,515                 directory, all directories are treated like packages.
2023-10-17T19:42:41,515           ********************************************************************************

2023-10-17T19:42:41,515   !!
2023-10-17T19:42:41,516     check.warn(importable)
2023-10-17T19:42:41,516   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-10-17T19:42:41,516   !!

2023-10-17T19:42:41,517           ********************************************************************************
2023-10-17T19:42:41,517           ############################
2023-10-17T19:42:41,517           # Package would be ignored #
2023-10-17T19:42:41,518           ############################
2023-10-17T19:42:41,518           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-10-17T19:42:41,518           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,518           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,519           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-10-17T19:42:41,519           to the `packages` configuration field.

2023-10-17T19:42:41,519           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,519           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,520           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,520           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,520           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,521           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-10-17T19:42:41,522           already explicitly excluding 'moleculekit.tmalign.src' via
2023-10-17T19:42:41,522           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,522           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,523           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,523           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,524           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,525           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,526                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,526                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,530                 directory, all directories are treated like packages.
2023-10-17T19:42:41,531           ********************************************************************************

2023-10-17T19:42:41,531   !!
2023-10-17T19:42:41,531     check.warn(importable)
2023-10-17T19:42:41,531   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-10-17T19:42:41,532   !!

2023-10-17T19:42:41,532           ********************************************************************************
2023-10-17T19:42:41,532           ############################
2023-10-17T19:42:41,532           # Package would be ignored #
2023-10-17T19:42:41,532           ############################
2023-10-17T19:42:41,532           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-10-17T19:42:41,533           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,533           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,534           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-10-17T19:42:41,534           to the `packages` configuration field.

2023-10-17T19:42:41,534           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,534           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,535           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,535           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,535           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,536           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-10-17T19:42:41,536           already explicitly excluding 'moleculekit.wrapping' via
2023-10-17T19:42:41,536           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,536           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,536           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,536           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,537           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,537           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,537                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,538                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,538                 directory, all directories are treated like packages.
2023-10-17T19:42:41,538           ********************************************************************************

2023-10-17T19:42:41,538   !!
2023-10-17T19:42:41,538     check.warn(importable)
2023-10-17T19:42:41,538   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-10-17T19:42:41,539   !!

2023-10-17T19:42:41,539           ********************************************************************************
2023-10-17T19:42:41,539           ############################
2023-10-17T19:42:41,539           # Package would be ignored #
2023-10-17T19:42:41,539           ############################
2023-10-17T19:42:41,540           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-10-17T19:42:41,540           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,540           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,540           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-10-17T19:42:41,540           to the `packages` configuration field.

2023-10-17T19:42:41,541           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,541           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,541           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,541           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,542           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,542           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-10-17T19:42:41,542           already explicitly excluding 'moleculekit.xtc_utils' via
2023-10-17T19:42:41,542           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,542           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,543           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,543           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,543           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,544           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,544                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,544                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,544                 directory, all directories are treated like packages.
2023-10-17T19:42:41,544           ********************************************************************************

2023-10-17T19:42:41,545   !!
2023-10-17T19:42:41,545     check.warn(importable)
2023-10-17T19:42:41,545   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-10-17T19:42:41,545   !!

2023-10-17T19:42:41,545           ********************************************************************************
2023-10-17T19:42:41,545           ############################
2023-10-17T19:42:41,545           # Package would be ignored #
2023-10-17T19:42:41,546           ############################
2023-10-17T19:42:41,546           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-10-17T19:42:41,546           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,546           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,546           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-10-17T19:42:41,546           to the `packages` configuration field.

2023-10-17T19:42:41,547           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,547           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,547           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,547           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,547           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,548           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-10-17T19:42:41,548           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-10-17T19:42:41,548           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,548           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,548           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,548           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,549           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,549           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,549                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,549                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,549                 directory, all directories are treated like packages.
2023-10-17T19:42:41,549           ********************************************************************************

2023-10-17T19:42:41,550   !!
2023-10-17T19:42:41,550     check.warn(importable)
2023-10-17T19:42:41,550   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-10-17T19:42:41,550   !!

2023-10-17T19:42:41,550           ********************************************************************************
2023-10-17T19:42:41,551           ############################
2023-10-17T19:42:41,551           # Package would be ignored #
2023-10-17T19:42:41,551           ############################
2023-10-17T19:42:41,551           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-10-17T19:42:41,551           but it is absent from setuptools' `packages` configuration.

2023-10-17T19:42:41,551           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-17T19:42:41,552           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-10-17T19:42:41,552           to the `packages` configuration field.

2023-10-17T19:42:41,552           Alternatively, you can also rely on setuptools' discovery methods
2023-10-17T19:42:41,552           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-17T19:42:41,552           instead of `find_packages(...)`/`find:`).

2023-10-17T19:42:41,552           You can read more about "package discovery" on setuptools documentation page:

2023-10-17T19:42:41,553           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-17T19:42:41,553           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-10-17T19:42:41,553           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-10-17T19:42:41,553           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-17T19:42:41,553           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-17T19:42:41,553           combination with a more fine grained `package-data` configuration.

2023-10-17T19:42:41,554           You can read more about "package data files" on setuptools documentation page:

2023-10-17T19:42:41,554           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-17T19:42:41,554           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-17T19:42:41,554                 even if it does not contain any `.py` files.
2023-10-17T19:42:41,555                 On the other hand, currently there is no concept of package data
2023-10-17T19:42:41,555                 directory, all directories are treated like packages.
2023-10-17T19:42:41,555           ********************************************************************************

2023-10-17T19:42:41,555   !!
2023-10-17T19:42:41,555     check.warn(importable)
2023-10-17T19:42:41,555   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:41,555   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:41,556   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T19:42:41,556   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T19:42:41,556   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T19:42:41,556   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T19:42:41,556   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T19:42:41,556   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T19:42:41,556   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T19:42:41,556   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T19:42:41,585   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T19:42:41,588   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T19:42:41,589   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T19:42:41,606   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T19:42:41,608   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T19:42:41,609   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T19:42:41,612   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T19:42:41,614   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-10-17T19:42:41,825   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-17T19:42:41,826   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-10-17T19:42:41,829   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-10-17T19:42:41,829   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,830   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,832   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,835   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,837   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,839   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,841   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,843   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,845   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,847   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,850   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,852   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,854   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,857   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,859   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,861   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,863   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,865   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,868   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,870   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,871   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,873   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,876   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,878   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,879   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,881   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,883   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,885   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,887   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,889   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,891   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,893   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,895   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,896   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,898   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,900   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,902   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,904   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,906   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,908   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,910   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,912   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,914   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,916   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,918   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,920   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,922   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,924   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,926   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,927   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,930   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,932   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,933   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,935   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,937   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,939   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,941   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,943   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,945   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,947   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,949   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,951   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,952   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,954   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,956   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,958   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,961   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,963   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,965   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,966   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,968   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,970   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,972   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,974   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,976   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,977   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,979   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,981   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,983   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,985   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,987   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,989   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,991   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,993   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,995   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,997   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:41,999   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,001   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,003   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,005   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,007   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,009   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,011   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,013   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,014   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,016   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,018   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,020   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,022   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,024   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,026   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,028   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,030   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,032   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,034   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,036   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,038   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,039   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,041   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,043   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,045   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,047   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,049   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,051   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,053   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,055   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,058   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,059   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,061   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,063   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,065   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,067   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,069   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,071   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,073   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,075   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,077   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,079   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,081   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,083   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,085   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,087   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,089   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,091   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,093   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,095   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,097   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,099   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,102   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,104   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,107   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,109   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,111   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,113   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,115   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,117   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,119   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,121   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,123   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,125   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,127   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,129   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,131   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,133   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,135   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,137   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,139   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,142   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,144   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,146   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,148   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,150   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,152   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,154   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,156   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,157   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,159   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,161   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,163   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,165   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,167   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,169   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,171   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,173   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,175   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,177   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-10-17T19:42:42,179   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T19:42:42,180   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T19:42:42,201   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T19:42:42,203   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T19:42:42,205   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-17T19:42:42,206   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-10-17T19:42:42,208   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-17T19:42:42,209   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-17T19:42:42,215   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T19:42:42,216   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T19:42:42,238   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T19:42:42,240   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T19:42:42,240   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T19:42:42,261   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T19:42:42,263   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T19:42:42,265   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T19:42:42,265   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T19:42:42,268   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T19:42:42,270   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-10-17T19:42:42,272   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T19:42:42,273   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T19:42:42,277   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T19:42:42,279   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T19:42:42,281   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T19:42:42,282   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T19:42:42,310   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T19:42:42,312   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T19:42:42,313   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T19:42:42,335   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T19:42:42,338   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T19:42:42,338   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T19:42:42,362   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T19:42:42,364   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T19:42:42,365   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T19:42:42,384   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T19:42:42,395   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-17T19:42:42,396   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.4'
2023-10-17T19:42:42,396   running build_ext
2023-10-17T19:42:42,407   building 'moleculekit.interactions.hbonds' extension
2023-10-17T19:42:42,408   creating build/temp.linux-armv7l-cpython-39
2023-10-17T19:42:42,408   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-10-17T19:42:42,409   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-10-17T19:42:42,409   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-10-17T19:42:42,410   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-10-17T19:42:42,673   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:42:42,674                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:42:42,674                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:42:42,674                    from moleculekit/interactions/hbonds/hbonds.cpp:1219:
2023-10-17T19:42:42,674   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:42:42,674      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:42:42,674         |  ^~~~~~~
2023-10-17T19:43:08,950   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:43:09,270   building 'moleculekit.interactions.pipi' extension
2023-10-17T19:43:09,270   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-10-17T19:43:09,271   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-10-17T19:43:09,509   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:43:09,510                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:43:09,510                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:43:09,510                    from moleculekit/interactions/pipi/pipi.cpp:1219:
2023-10-17T19:43:09,510   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:43:09,510      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:43:09,510         |  ^~~~~~~
2023-10-17T19:43:37,626   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:43:37,948   building 'moleculekit.interactions.cationpi' extension
2023-10-17T19:43:37,949   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-10-17T19:43:37,949   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-10-17T19:43:38,184   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:43:38,185                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:43:38,185                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:43:38,185                    from moleculekit/interactions/cationpi/cationpi.cpp:1219:
2023-10-17T19:43:38,185   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:43:38,185      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:43:38,185         |  ^~~~~~~
2023-10-17T19:44:06,249   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:44:06,565   building 'moleculekit.interactions.sigmahole' extension
2023-10-17T19:44:06,565   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-10-17T19:44:06,566   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-10-17T19:44:06,801   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:44:06,802                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:44:06,802                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:44:06,802                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1219:
2023-10-17T19:44:06,802   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:44:06,802      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:44:06,802         |  ^~~~~~~
2023-10-17T19:44:34,178   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:44:34,498   building 'moleculekit.wrapping' extension
2023-10-17T19:44:34,498   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-10-17T19:44:34,499   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-10-17T19:44:34,732   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:44:34,732                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:44:34,732                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:44:34,732                    from moleculekit/wrapping/wrapping.cpp:1219:
2023-10-17T19:44:34,732   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:44:34,733      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:44:34,733         |  ^~~~~~~
2023-10-17T19:44:58,662   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:44:58,878   building 'moleculekit.bondguesser_utils' extension
2023-10-17T19:44:58,878   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-10-17T19:44:58,879   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-10-17T19:44:59,114   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:44:59,114                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:44:59,114                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:44:59,114                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1219:
2023-10-17T19:44:59,115   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:44:59,115      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:44:59,115         |  ^~~~~~~
2023-10-17T19:45:00,658   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-10-17T19:45:00,659   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19759:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T19:45:00,659   19759 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-10-17T19:45:00,659         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T19:45:00,659   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19771:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T19:45:00,659   19771 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-10-17T19:45:00,659         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T19:45:00,660   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-10-17T19:45:00,660   19783 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-10-17T19:45:00,660         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-10-17T19:45:00,660   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19822:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,660   19822 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T19:45:00,661         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,661   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19861:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,661   19861 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T19:45:00,661         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,661   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19900:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,661   19900 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,662         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,662   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19939:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,662   19939 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T19:45:00,662         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,662   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19945:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,662   19945 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T19:45:00,662         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,663   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19986:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,663   19986 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T19:45:00,663         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,663   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19992:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,663   19992 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,663         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,663   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20033:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,663   20033 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T19:45:00,664         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,664   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20039:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,664   20039 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,664         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,664   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20080:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,664   20080 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T19:45:00,665         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,665   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20133:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,665   20133 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,665         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,665   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20180:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,665   20180 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,665         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,666   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20221:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,666   20221 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T19:45:00,666         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,666   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20227:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,666   20227 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T19:45:00,666         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,666   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20233:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,667   20233 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,667         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,667   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20280:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,667   20280 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-10-17T19:45:00,667         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,667   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20286:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,667   20286 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,668         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,668   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20327:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,668   20327 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-10-17T19:45:00,668         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,668   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20339:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,668   20339 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,668         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,669   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20392:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-10-17T19:45:00,669   20392 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-10-17T19:45:00,669         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,687   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-10-17T19:45:00,687   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21014:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T19:45:00,687   21014 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-10-17T19:45:00,688         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-10-17T19:45:00,688   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21051:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T19:45:00,688   21051 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-10-17T19:45:00,688         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-17T19:45:23,784   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:45:24,084   building 'moleculekit.atomselect_utils' extension
2023-10-17T19:45:24,084   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-10-17T19:45:24,085   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-10-17T19:45:24,325   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:45:24,325                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:45:24,326                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:45:24,326                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1236:
2023-10-17T19:45:24,326   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:45:24,326      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:45:24,326         |  ^~~~~~~
2023-10-17T19:45:26,052   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-10-17T19:45:26,052   moleculekit/atomselect_utils/atomselect_utils.cpp:23713:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T19:45:26,052   23713 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-10-17T19:45:26,052         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-10-17T19:45:26,057   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-17T19:45:26,057   moleculekit/atomselect_utils/atomselect_utils.cpp:23965:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T19:45:26,057   23965 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-17T19:45:26,057         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T19:45:26,062   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-10-17T19:45:26,062   moleculekit/atomselect_utils/atomselect_utils.cpp:24232:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-10-17T19:45:26,063   24232 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-10-17T19:45:26,063         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T19:45:56,574   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:45:56,905   building 'moleculekit.distance_utils' extension
2023-10-17T19:45:56,905   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-10-17T19:45:56,906   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-10-17T19:45:57,148   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:45:57,148                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:45:57,148                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:45:57,149                    from moleculekit/distance_utils/distance_utils.cpp:1219:
2023-10-17T19:45:57,149   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:45:57,149      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:45:57,149         |  ^~~~~~~
2023-10-17T19:46:29,342   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:46:29,671   building 'moleculekit.occupancy_utils' extension
2023-10-17T19:46:29,671   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-10-17T19:46:29,672   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-10-17T19:46:29,916   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:46:29,917                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:46:29,917                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:46:29,917                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1219:
2023-10-17T19:46:29,917   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:46:29,917      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:46:29,918         |  ^~~~~~~
2023-10-17T19:46:52,960   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:46:53,172   building 'moleculekit.xtc' extension
2023-10-17T19:46:53,173   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-10-17T19:46:53,174   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-10-17T19:46:53,175   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-10-17T19:46:53,414   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,414      66 |  "OK",
2023-10-17T19:46:53,415         |  ^~~~
2023-10-17T19:46:53,415   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,415      67 |  "Header",
2023-10-17T19:46:53,415         |  ^~~~~~~~
2023-10-17T19:46:53,415   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,416      68 |  "String",
2023-10-17T19:46:53,416         |  ^~~~~~~~
2023-10-17T19:46:53,416   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,416      69 |  "Double",
2023-10-17T19:46:53,416         |  ^~~~~~~~
2023-10-17T19:46:53,417   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,417      70 |  "Integer",
2023-10-17T19:46:53,417         |  ^~~~~~~~~
2023-10-17T19:46:53,417   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,417      71 |  "Float",
2023-10-17T19:46:53,417         |  ^~~~~~~
2023-10-17T19:46:53,418   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,418      72 |  "Unsigned integer",
2023-10-17T19:46:53,418         |  ^~~~~~~~~~~~~~~~~~
2023-10-17T19:46:53,418   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,418      73 |  "Compressed 3D coordinate",
2023-10-17T19:46:53,418         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:46:53,419   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,419      74 |  "Closing file",
2023-10-17T19:46:53,419         |  ^~~~~~~~~~~~~~
2023-10-17T19:46:53,419   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,419      75 |  "Magic number",
2023-10-17T19:46:53,419         |  ^~~~~~~~~~~~~~
2023-10-17T19:46:53,420   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,420      76 |  "Not enough memory",
2023-10-17T19:46:53,420         |  ^~~~~~~~~~~~~~~~~~~
2023-10-17T19:46:53,420   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,420      77 |  "End of file",
2023-10-17T19:46:53,420         |  ^~~~~~~~~~~~~
2023-10-17T19:46:53,421   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-10-17T19:46:53,421      78 |  "File not found"
2023-10-17T19:46:53,421         |  ^~~~~~~~~~~~~~~~
2023-10-17T19:46:53,429   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-10-17T19:46:53,429   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,429     459 |     while (size >= num && num_of_bits < 32)
2023-10-17T19:46:53,430         |            ~~~~~^~~~~~
2023-10-17T19:46:53,431   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-10-17T19:46:53,431   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,431     505 |     while (bytes[num_of_bytes] >= num)
2023-10-17T19:46:53,431         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-10-17T19:46:53,434   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-10-17T19:46:53,434   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,434     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-10-17T19:46:53,434         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-10-17T19:46:53,435   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,435     616 |   for (i = 0; i < num_of_bytes; i++)
2023-10-17T19:46:53,435         |               ~~^~~~~~~~~~~~~~
2023-10-17T19:46:53,435   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,436     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-10-17T19:46:53,436         |               ~~^~~~~~~~~~~~~~~~
2023-10-17T19:46:53,437   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-10-17T19:46:53,437   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,438     664 |   if (lastbits < num_of_bits)
2023-10-17T19:46:53,438         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-10-17T19:46:53,441   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-10-17T19:46:53,442   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,442     785 |  if(size3>xfp->buf1size)
2023-10-17T19:46:53,442         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T19:46:53,444   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,444     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T19:46:53,444         |                   ^
2023-10-17T19:46:53,447   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,448     932 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T19:46:53,448         |        ~~~~~~~~~^~~~~~~~
2023-10-17T19:46:53,448   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,448     935 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T19:46:53,448         |        ~~~~~~~~~^~~~~~~~
2023-10-17T19:46:53,449   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,449     938 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T19:46:53,449         |        ~~~~~~~~~^~~~~~~~
2023-10-17T19:46:53,450   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,450     945 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T19:46:53,450         |        ~~~~~~~~~^~~~~~~~
2023-10-17T19:46:53,450   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,451     948 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T19:46:53,451         |        ~~~~~~~~~^~~~~~~~
2023-10-17T19:46:53,451   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,451     951 |     if(countmjh >= size3 ) { return -1; }
2023-10-17T19:46:53,451         |        ~~~~~~~~~^~~~~~~~
2023-10-17T19:46:53,452   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-17T19:46:53,453     756 |  int smallidx,  minidx, maxidx;
2023-10-17T19:46:53,453         |                 ^~~~~~
2023-10-17T19:46:53,453   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-17T19:46:53,453     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-17T19:46:53,453         |                         ^~~~~~
2023-10-17T19:46:53,453   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-17T19:46:53,454     763 |  int errval=1;
2023-10-17T19:46:53,454         |      ^~~~~~
2023-10-17T19:46:53,456   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-10-17T19:46:53,457   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,457    1011 |  if(size3>xfp->buf1size)
2023-10-17T19:46:53,457         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T19:46:53,459   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,459    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T19:46:53,459         |                     ~~~~~~~~^~~~~~~
2023-10-17T19:46:53,460   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,461    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T19:46:53,461         |                    ~~~~~~~~^~~~~~~
2023-10-17T19:46:53,461   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,461    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-10-17T19:46:53,462         |                    ~~~~~~~~^~~~~~~
2023-10-17T19:46:53,463   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,463    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-10-17T19:46:53,463         |                  ^
2023-10-17T19:46:53,463   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,464    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T19:46:53,464         |                   ^
2023-10-17T19:46:53,467   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,467    1275 |  if(tmp==(unsigned int)buf2[0])
2023-10-17T19:46:53,467         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:46:53,468   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-17T19:46:53,468    1001 |  int errval;
2023-10-17T19:46:53,468         |      ^~~~~~
2023-10-17T19:46:53,470   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-10-17T19:46:53,471   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,471    1316 |  if(size3>xfp->buf1size)
2023-10-17T19:46:53,471         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T19:46:53,472   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,473    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T19:46:53,473         |                   ^
2023-10-17T19:46:53,475   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-10-17T19:46:53,476    1289 |  int smallidx,  maxidx, minidx;
2023-10-17T19:46:53,476         |                         ^~~~~~
2023-10-17T19:46:53,476   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-10-17T19:46:53,476    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-10-17T19:46:53,476         |                         ^~~~~~
2023-10-17T19:46:53,476   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-10-17T19:46:53,476    1297 |  int errval=1;
2023-10-17T19:46:53,476         |      ^~~~~~
2023-10-17T19:46:53,477   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-10-17T19:46:53,478   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,478    1513 |  if(size3>xfp->buf1size) {
2023-10-17T19:46:53,478         |     ~~~~~^~~~~~~~~~~~~~
2023-10-17T19:46:53,482   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,482    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-10-17T19:46:53,482         |                  ^
2023-10-17T19:46:53,482   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-10-17T19:46:53,483    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-10-17T19:46:53,483         |                   ^
2023-10-17T19:46:53,486   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-10-17T19:46:53,486    1743 |  if(tmp==(unsigned int)buf2[0])
2023-10-17T19:46:53,487         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-10-17T19:46:53,487   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-10-17T19:46:53,487    1504 |  int errval=1;
2023-10-17T19:46:53,487         |      ^~~~~~
2023-10-17T19:46:55,710   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-10-17T19:46:55,965   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-10-17T19:46:56,538   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-10-17T19:46:56,538   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-17T19:46:56,538     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-10-17T19:46:56,538         |      ^~~
2023-10-17T19:46:56,544   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-10-17T19:46:56,545   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-10-17T19:46:56,545     418 |  int nf3 = nframes * 3;
2023-10-17T19:46:56,545         |      ^~~
2023-10-17T19:46:56,549   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-10-17T19:46:56,550   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-10-17T19:46:56,550     491 |  int reading_index = 0;
2023-10-17T19:46:56,550         |      ^~~~~~~~~~~~~
2023-10-17T19:46:56,550   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-10-17T19:46:56,550     492 |  int writing_index = 0;
2023-10-17T19:46:56,550         |      ^~~~~~~~~~~~~
2023-10-17T19:46:57,305   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-10-17T19:46:57,552   In file included from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-10-17T19:46:57,552                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-10-17T19:46:57,552                    from /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-10-17T19:46:57,552                    from moleculekit/xtc_utils/xtc.cpp:1223:
2023-10-17T19:46:57,552   /tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-10-17T19:46:57,552      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-10-17T19:46:57,553         |  ^~~~~~~
2023-10-17T19:47:17,652   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:47:17,980   building 'moleculekit.tmalign' extension
2023-10-17T19:47:17,981   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-10-17T19:47:17,981   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-10-17T19:47:17,983   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-10-17T19:47:47,328   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-w17i6b4s/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-10-17T19:48:05,737   In file included from /usr/include/c++/10/vector:72,
2023-10-17T19:48:05,737                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-17T19:48:05,738   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-10-17T19:48:05,738   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-10-17T19:48:05,738     426 |       vector<_Tp, _Alloc>::
2023-10-17T19:48:05,738         |       ^~~~~~~~~~~~~~~~~~~
2023-10-17T19:48:06,313   In file included from /usr/include/c++/10/vector:67,
2023-10-17T19:48:06,314                    from moleculekit/tmalign/tmalign_util.cpp:1234:
2023-10-17T19:48:06,314   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-10-17T19:48:06,314   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T19:48:06,314    1198 |    _M_realloc_insert(end(), __x);
2023-10-17T19:48:06,314         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T19:48:06,315   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T19:48:06,315    1198 |    _M_realloc_insert(end(), __x);
2023-10-17T19:48:06,315         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T19:48:06,315   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-10-17T19:48:06,315    1198 |    _M_realloc_insert(end(), __x);
2023-10-17T19:48:06,316         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-10-17T19:48:08,726   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-10-17T19:48:09,188   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-10-17T19:48:09,189   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.4'
2023-10-17T19:48:09,189   installing to build/bdist.linux-armv7l/wheel
2023-10-17T19:48:09,189   running install
2023-10-17T19:48:09,214   running install_lib
2023-10-17T19:48:09,221   creating build/bdist.linux-armv7l
2023-10-17T19:48:09,221   creating build/bdist.linux-armv7l/wheel
2023-10-17T19:48:09,224   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,230   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T19:48:09,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T19:48:09,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-10-17T19:48:09,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,279   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T19:48:09,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T19:48:09,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-10-17T19:48:09,305   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T19:48:09,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T19:48:09,537   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-10-17T19:48:09,542   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,735   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,756   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,758   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,795   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-10-17T19:48:09,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T19:48:09,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-10-17T19:48:09,878   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-17T19:48:09,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-10-17T19:48:09,882   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-10-17T19:48:09,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:09,928   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T19:48:09,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T19:48:09,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T19:48:09,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-10-17T19:48:09,938   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T19:48:09,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T19:48:09,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T19:48:09,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-10-17T19:48:09,963   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T19:48:09,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T19:48:09,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T19:48:09,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-10-17T19:48:09,971   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T19:48:09,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T19:48:09,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T19:48:09,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-10-17T19:48:09,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,010   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,011   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T19:48:10,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T19:48:10,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-10-17T19:48:10,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,037   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T19:48:10,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T19:48:10,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-10-17T19:48:10,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,138   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T19:48:10,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T19:48:10,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-10-17T19:48:10,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-10-17T19:48:10,191   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T19:48:10,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T19:48:10,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-10-17T19:48:10,220   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T19:48:10,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T19:48:10,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-10-17T19:48:10,250   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T19:48:10,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T19:48:10,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T19:48:10,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T19:48:10,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-10-17T19:48:10,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,268   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-17T19:48:10,269   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T19:48:10,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T19:48:10,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T19:48:10,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T19:48:10,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-10-17T19:48:10,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-10-17T19:48:10,280   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T19:48:10,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T19:48:10,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T19:48:10,286   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T19:48:10,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-10-17T19:48:10,291   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T19:48:10,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T19:48:10,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-10-17T19:48:10,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,300   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,310   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T19:48:10,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T19:48:10,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T19:48:10,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T19:48:10,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-10-17T19:48:10,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-10-17T19:48:10,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,333   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T19:48:10,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T19:48:10,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-10-17T19:48:10,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,384   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,408   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T19:48:10,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T19:48:10,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-10-17T19:48:10,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-10-17T19:48:10,425   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T19:48:10,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T19:48:10,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T19:48:10,450   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-17T19:48:10,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-10-17T19:48:10,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-10-17T19:48:10,455   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-17T19:48:10,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-10-17T19:48:10,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,495   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T19:48:10,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T19:48:10,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-10-17T19:48:10,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-10-17T19:48:10,675   running install_egg_info
2023-10-17T19:48:10,681   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.4-py3.9.egg-info
2023-10-17T19:48:10,693   running install_scripts
2023-10-17T19:48:10,741   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.4.dist-info/WHEEL
2023-10-17T19:48:10,743   creating '/tmp/pip-wheel-p7ma9alk/.tmp-ysxawccx/moleculekit-1.8.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-17T19:48:10,746   adding 'moleculekit/__init__.py'
2023-10-17T19:48:10,748   adding 'moleculekit/_version.py'
2023-10-17T19:48:10,749   adding 'moleculekit/align.py'
2023-10-17T19:48:11,064   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:11,076   adding 'moleculekit/bondguesser.py'
2023-10-17T19:48:11,317   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:11,325   adding 'moleculekit/config.py'
2023-10-17T19:48:11,327   adding 'moleculekit/dihedral.py'
2023-10-17T19:48:11,328   adding 'moleculekit/distance.py'
2023-10-17T19:48:11,633   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:11,644   adding 'moleculekit/home.py'
2023-10-17T19:48:11,646   adding 'moleculekit/logging.ini'
2023-10-17T19:48:11,659   adding 'moleculekit/molecule.py'
2023-10-17T19:48:11,884   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:11,893   adding 'moleculekit/opm.py'
2023-10-17T19:48:11,895   adding 'moleculekit/periodictable.py'
2023-10-17T19:48:11,896   adding 'moleculekit/pymolgraphics.py'
2023-10-17T19:48:11,897   adding 'moleculekit/rcsb.py'
2023-10-17T19:48:11,899   adding 'moleculekit/rdkitintegration.py'
2023-10-17T19:48:11,911   adding 'moleculekit/readers.py'
2023-10-17T19:48:12,513   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:12,538   adding 'moleculekit/util.py'
2023-10-17T19:48:12,539   adding 'moleculekit/version.py'
2023-10-17T19:48:12,540   adding 'moleculekit/viewer.py'
2023-10-17T19:48:12,542   adding 'moleculekit/vmd_wrapper'
2023-10-17T19:48:12,544   adding 'moleculekit/vmdgraphics.py'
2023-10-17T19:48:12,546   adding 'moleculekit/vmdviewer.py'
2023-10-17T19:48:12,776   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:12,789   adding 'moleculekit/writers.py'
2023-10-17T19:48:13,054   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:13,064   adding 'moleculekit/atomselect/__init__.py'
2023-10-17T19:48:13,066   adding 'moleculekit/atomselect/analyze.py'
2023-10-17T19:48:13,068   adding 'moleculekit/atomselect/atomselect.py'
2023-10-17T19:48:13,070   adding 'moleculekit/atomselect/languageparser.py'
2023-10-17T19:48:13,174   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-10-17T19:48:13,185   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-10-17T19:48:13,277   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-10-17T19:48:13,286   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-10-17T19:48:13,385   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-10-17T19:48:13,394   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-10-17T19:48:13,396   adding 'moleculekit/interactions/__init__.py'
2023-10-17T19:48:13,682   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:13,949   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:13,960   adding 'moleculekit/interactions/interactions.py'
2023-10-17T19:48:14,264   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:14,551   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-10-17T19:48:14,652   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-10-17T19:48:14,661   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-10-17T19:48:14,752   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-10-17T19:48:14,761   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-10-17T19:48:14,853   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-10-17T19:48:14,862   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-10-17T19:48:14,953   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-10-17T19:48:14,962   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-10-17T19:48:15,049   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-10-17T19:48:15,058   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-10-17T19:48:15,059   adding 'moleculekit/pdbx/__init__.py'
2023-10-17T19:48:15,063   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-10-17T19:48:15,066   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-10-17T19:48:15,068   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-10-17T19:48:15,069   adding 'moleculekit/pdbx/reader/__init__.py'
2023-10-17T19:48:15,071   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-10-17T19:48:15,073   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-10-17T19:48:15,074   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-10-17T19:48:15,075   adding 'moleculekit/pdbx/tests/__init__.py'
2023-10-17T19:48:15,077   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-10-17T19:48:15,078   adding 'moleculekit/pdbx/writer/__init__.py'
2023-10-17T19:48:15,080   adding 'moleculekit/ply/__init__.py'
2023-10-17T19:48:15,084   adding 'moleculekit/ply/lex.py'
2023-10-17T19:48:15,096   adding 'moleculekit/ply/yacc.py'
2023-10-17T19:48:15,098   adding 'moleculekit/projections/__init__.py'
2023-10-17T19:48:15,100   adding 'moleculekit/projections/metriccoordinate.py'
2023-10-17T19:48:15,103   adding 'moleculekit/projections/metricdihedral.py'
2023-10-17T19:48:15,107   adding 'moleculekit/projections/metricdistance.py'
2023-10-17T19:48:15,109   adding 'moleculekit/projections/metricfluctuation.py'
2023-10-17T19:48:15,111   adding 'moleculekit/projections/metricgyration.py'
2023-10-17T19:48:15,115   adding 'moleculekit/projections/metricplumed2.py'
2023-10-17T19:48:15,117   adding 'moleculekit/projections/metricrmsd.py'
2023-10-17T19:48:15,119   adding 'moleculekit/projections/metricsasa.py'
2023-10-17T19:48:15,121   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-10-17T19:48:15,122   adding 'moleculekit/projections/metricshell.py'
2023-10-17T19:48:15,124   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-10-17T19:48:15,125   adding 'moleculekit/projections/metrictmscore.py'
2023-10-17T19:48:15,127   adding 'moleculekit/projections/projection.py'
2023-10-17T19:48:15,128   adding 'moleculekit/projections/util.py'
2023-10-17T19:48:15,130   adding 'moleculekit/share/ALA.cif'
2023-10-17T19:48:15,132   adding 'moleculekit/share/backbone.cif'
2023-10-17T19:48:16,435   adding 'moleculekit/share/opm_sequences.json'
2023-10-17T19:48:16,520   adding 'moleculekit/share/atomselect/atomselect.json'
2023-10-17T19:48:16,525   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-10-17T19:48:16,526   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-10-17T19:48:16,527   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-10-17T19:48:16,528   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-10-17T19:48:16,529   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-10-17T19:48:16,531   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-10-17T19:48:16,532   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-10-17T19:48:16,533   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-10-17T19:48:16,534   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-10-17T19:48:16,535   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-10-17T19:48:16,537   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-10-17T19:48:16,538   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-10-17T19:48:16,539   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-10-17T19:48:16,540   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-10-17T19:48:16,541   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-10-17T19:48:16,543   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-10-17T19:48:16,544   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-10-17T19:48:16,545   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-10-17T19:48:16,546   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-10-17T19:48:16,547   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-10-17T19:48:16,549   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-10-17T19:48:16,550   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-10-17T19:48:16,551   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-10-17T19:48:16,552   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-10-17T19:48:16,554   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-10-17T19:48:16,555   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-10-17T19:48:16,556   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-10-17T19:48:16,557   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-10-17T19:48:16,558   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-10-17T19:48:16,559   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-10-17T19:48:16,561   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-10-17T19:48:16,562   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-10-17T19:48:16,563   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-10-17T19:48:16,564   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-10-17T19:48:16,565   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-10-17T19:48:16,567   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-10-17T19:48:16,568   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-10-17T19:48:16,569   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-10-17T19:48:16,570   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-10-17T19:48:16,571   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-10-17T19:48:16,573   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-10-17T19:48:16,574   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-10-17T19:48:16,575   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-10-17T19:48:16,576   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-10-17T19:48:16,577   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-10-17T19:48:16,579   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-10-17T19:48:16,580   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-10-17T19:48:16,581   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-10-17T19:48:16,582   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-10-17T19:48:16,583   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-10-17T19:48:16,585   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-10-17T19:48:16,586   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-10-17T19:48:16,587   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-10-17T19:48:16,588   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-10-17T19:48:16,589   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-10-17T19:48:16,591   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-10-17T19:48:16,592   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-10-17T19:48:16,593   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-10-17T19:48:16,594   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-10-17T19:48:16,595   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-10-17T19:48:16,596   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-10-17T19:48:16,598   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-10-17T19:48:16,599   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-10-17T19:48:16,600   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-10-17T19:48:16,601   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-10-17T19:48:16,602   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-10-17T19:48:16,604   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-10-17T19:48:16,605   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-10-17T19:48:16,606   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-10-17T19:48:16,607   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-10-17T19:48:16,608   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-10-17T19:48:16,609   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-10-17T19:48:16,611   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-10-17T19:48:16,612   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-10-17T19:48:16,613   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-10-17T19:48:16,614   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-10-17T19:48:16,616   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-10-17T19:48:16,617   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-10-17T19:48:16,618   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-10-17T19:48:16,619   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-10-17T19:48:16,621   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-10-17T19:48:16,622   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-10-17T19:48:16,623   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-10-17T19:48:16,624   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-10-17T19:48:16,626   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-10-17T19:48:16,627   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-10-17T19:48:16,628   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-10-17T19:48:16,629   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-10-17T19:48:16,630   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-10-17T19:48:16,632   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-10-17T19:48:16,633   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-10-17T19:48:16,634   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-10-17T19:48:16,635   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-10-17T19:48:16,637   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-10-17T19:48:16,638   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-10-17T19:48:16,639   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-10-17T19:48:16,640   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-10-17T19:48:16,641   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-10-17T19:48:16,643   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-10-17T19:48:16,644   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-10-17T19:48:16,645   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-10-17T19:48:16,646   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-10-17T19:48:16,648   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-10-17T19:48:16,649   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-10-17T19:48:16,650   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-10-17T19:48:16,651   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-10-17T19:48:16,653   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-10-17T19:48:16,654   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-10-17T19:48:16,655   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-10-17T19:48:16,656   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-10-17T19:48:16,658   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-10-17T19:48:16,659   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-10-17T19:48:16,660   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-10-17T19:48:16,662   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-10-17T19:48:16,663   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-10-17T19:48:16,664   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-10-17T19:48:16,665   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-10-17T19:48:16,667   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-10-17T19:48:16,668   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-10-17T19:48:16,669   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-10-17T19:48:16,670   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-10-17T19:48:16,671   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-10-17T19:48:16,673   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-10-17T19:48:16,674   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-10-17T19:48:16,677   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-10-17T19:48:16,678   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-10-17T19:48:16,679   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-10-17T19:48:16,681   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-10-17T19:48:16,682   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-10-17T19:48:16,683   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-10-17T19:48:16,685   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-10-17T19:48:16,686   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-10-17T19:48:16,687   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-10-17T19:48:16,688   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-10-17T19:48:16,690   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-10-17T19:48:16,691   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-10-17T19:48:16,692   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-10-17T19:48:16,694   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-10-17T19:48:16,695   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-10-17T19:48:16,696   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-10-17T19:48:16,697   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-10-17T19:48:16,699   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-10-17T19:48:16,700   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-10-17T19:48:16,701   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-10-17T19:48:16,702   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-10-17T19:48:16,703   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-10-17T19:48:16,705   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-10-17T19:48:16,706   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-10-17T19:48:16,707   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-10-17T19:48:16,708   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-10-17T19:48:16,710   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-10-17T19:48:16,711   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-10-17T19:48:16,712   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-10-17T19:48:16,713   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-10-17T19:48:16,715   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-10-17T19:48:16,716   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-10-17T19:48:16,717   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-10-17T19:48:16,718   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-10-17T19:48:16,720   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-10-17T19:48:16,721   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-10-17T19:48:16,722   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-10-17T19:48:16,724   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-10-17T19:48:16,725   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-10-17T19:48:16,726   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-10-17T19:48:16,727   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-10-17T19:48:16,728   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-10-17T19:48:16,730   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-10-17T19:48:16,731   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-10-17T19:48:16,732   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-10-17T19:48:16,734   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-10-17T19:48:16,735   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-10-17T19:48:16,736   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-10-17T19:48:16,737   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-10-17T19:48:16,739   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-10-17T19:48:16,740   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-10-17T19:48:16,742   adding 'moleculekit/smallmol/__init__.py'
2023-10-17T19:48:16,747   adding 'moleculekit/smallmol/smallmol.py'
2023-10-17T19:48:16,750   adding 'moleculekit/smallmol/smallmollib.py'
2023-10-17T19:48:16,751   adding 'moleculekit/smallmol/test_smallmol.py'
2023-10-17T19:48:16,753   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-10-17T19:48:16,755   adding 'moleculekit/smallmol/util.py'
2023-10-17T19:48:16,757   adding 'moleculekit/smallmol/tools/__init__.py'
2023-10-17T19:48:16,759   adding 'moleculekit/smallmol/tools/clustering.py'
2023-10-17T19:48:16,760   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-10-17T19:48:16,762   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-10-17T19:48:16,852   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-10-17T19:48:16,861   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-10-17T19:48:16,862   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-10-17T19:48:16,864   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-10-17T19:48:16,881   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-10-17T19:48:16,884   adding 'moleculekit/tools/__init__.py'
2023-10-17T19:48:16,887   adding 'moleculekit/tools/atomtyper.py'
2023-10-17T19:48:16,889   adding 'moleculekit/tools/autosegment.py'
2023-10-17T19:48:16,891   adding 'moleculekit/tools/crystalpacking.py'
2023-10-17T19:48:16,894   adding 'moleculekit/tools/detect.py'
2023-10-17T19:48:16,896   adding 'moleculekit/tools/docking.py'
2023-10-17T19:48:16,898   adding 'moleculekit/tools/graphalignment.py'
2023-10-17T19:48:16,900   adding 'moleculekit/tools/hhblitsprofile.py'
2023-10-17T19:48:16,901   adding 'moleculekit/tools/moleculechecks.py'
2023-10-17T19:48:16,908   adding 'moleculekit/tools/preparation.py'
2023-10-17T19:48:16,910   adding 'moleculekit/tools/preparation_customres.py'
2023-10-17T19:48:16,912   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-10-17T19:48:16,915   adding 'moleculekit/tools/voxeldescriptors.py'
2023-10-17T19:48:16,917   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-10-17T19:48:16,918   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-10-17T19:48:17,007   adding 'moleculekit/wrapping/wrapping.cpp'
2023-10-17T19:48:17,015   adding 'moleculekit/wrapping/wrapping.pyx'
2023-10-17T19:48:17,105   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-10-17T19:48:17,113   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-10-17T19:48:17,114   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-10-17T19:48:17,118   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-10-17T19:48:17,119   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-10-17T19:48:17,120   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-10-17T19:48:17,128   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-10-17T19:48:17,129   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-10-17T19:48:17,131   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-10-17T19:48:17,134   adding 'moleculekit-1.8.4.dist-info/LICENSE'
2023-10-17T19:48:17,135   adding 'moleculekit-1.8.4.dist-info/METADATA'
2023-10-17T19:48:17,136   adding 'moleculekit-1.8.4.dist-info/WHEEL'
2023-10-17T19:48:17,137   adding 'moleculekit-1.8.4.dist-info/top_level.txt'
2023-10-17T19:48:17,142   adding 'moleculekit-1.8.4.dist-info/RECORD'
2023-10-17T19:48:17,304   removing build/bdist.linux-armv7l/wheel
2023-10-17T19:48:17,582   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-10-17T19:48:18,081   Created wheel for moleculekit: filename=moleculekit-1.8.4-cp39-cp39-linux_armv7l.whl size=12562850 sha256=0bf027b14aaf6eba192a62eca847fcc9289adbe078e85da1d77818e93976ff2b
2023-10-17T19:48:18,082   Stored in directory: /tmp/pip-ephem-wheel-cache-_yl8ribb/wheels/a6/eb/c1/fb52e204659cc7a174306e6166557190e0d22b124f83d28519
2023-10-17T19:48:18,106 Successfully built moleculekit
2023-10-17T19:48:18,432 Removed build tracker: '/tmp/pip-build-tracker-7a2eqqc3'