2023-10-19T09:38:07,366 Created temporary directory: /tmp/pip-build-tracker-ropw5bbd 2023-10-19T09:38:07,368 Initialized build tracking at /tmp/pip-build-tracker-ropw5bbd 2023-10-19T09:38:07,368 Created build tracker: /tmp/pip-build-tracker-ropw5bbd 2023-10-19T09:38:07,369 Entered build tracker: /tmp/pip-build-tracker-ropw5bbd 2023-10-19T09:38:07,369 Created temporary directory: /tmp/pip-wheel-ieoedzxv 2023-10-19T09:38:07,372 Created temporary directory: /tmp/pip-ephem-wheel-cache-cjdo0dje 2023-10-19T09:38:07,394 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-19T09:38:07,398 2 location(s) to search for versions of pyobo: 2023-10-19T09:38:07,398 * https://pypi.org/simple/pyobo/ 2023-10-19T09:38:07,398 * https://www.piwheels.org/simple/pyobo/ 2023-10-19T09:38:07,399 Fetching project page and analyzing links: https://pypi.org/simple/pyobo/ 2023-10-19T09:38:07,400 Getting page https://pypi.org/simple/pyobo/ 2023-10-19T09:38:07,401 Found index url https://pypi.org/simple/ 2023-10-19T09:38:07,621 Fetched page https://pypi.org/simple/pyobo/ as application/vnd.pypi.simple.v1+json 2023-10-19T09:38:07,643 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/98/5e/ad7ea3dab1d88562b4ccf8873bfab9c49117343adbead05aff3d31ab6bc9/pyobo-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2023-10-19T09:38:07,644 Found link https://files.pythonhosted.org/packages/9e/97/87e030c2c9e7af6ad6efae9615fae22e55782f97232113cbde014685bd5d/pyobo-0.0.1.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.0.1 2023-10-19T09:38:07,644 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/ae/3c/a49046cd777ecde3b93aa287595d97889b19f25a27ff3262e07303477629/pyobo-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,645 Found link https://files.pythonhosted.org/packages/e4/65/63519297121c87f4f86f99444043734f2eaebe083541e588475f77622284/pyobo-0.0.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.2 2023-10-19T09:38:07,646 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/30/c1/4c7e619de5335d05a503530dbff450dbb3ba10b2e50775308f23edc62dc4/pyobo-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,647 Found link https://files.pythonhosted.org/packages/6d/60/0378905c3a343db9d89179bcb84f0c8d29387d7c322fab2aa73f7b4734d2/pyobo-0.0.3.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.3 2023-10-19T09:38:07,648 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/b3/3ce0c93c64fbc62a618c2a84892503ac438e2e4008c58c737401b1fac69c/pyobo-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,649 Found link https://files.pythonhosted.org/packages/3a/77/399811b835d969bfb9ca11665192feb3d77ccdc814df1cb3a55de8ee6703/pyobo-0.0.4.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.4 2023-10-19T09:38:07,650 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/75/bc/9494351b989734fff9c48c8f78d8588c1cbd45a30504ce0db3bf8c4d24f3/pyobo-0.0.5-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,651 Found link https://files.pythonhosted.org/packages/d8/4d/6a4352fbdd9826bae90c9745ad7e2a2dda0982b266e5ebad41c3a68259a0/pyobo-0.0.5.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.5 2023-10-19T09:38:07,652 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/73/45/0b78d73ff6f0b3a2f45db53d02d2761f4785b7abc3894b01859061f24313/pyobo-0.0.6-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,653 Found link https://files.pythonhosted.org/packages/61/98/486dadecc83fbbd5d49648dd09a0d05d91501f4a7be461ba37a37fd711b6/pyobo-0.0.6.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.6 2023-10-19T09:38:07,653 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d4/f1/e5fc418924c64b351b73a1ab496e98530033d285fd2bba61a31e17819833/pyobo-0.0.7-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,655 Found link https://files.pythonhosted.org/packages/7f/43/adfd5d951cbbf3a90f721a031d0236de5ed4eafa9986e070243f21708c27/pyobo-0.0.7.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.7 2023-10-19T09:38:07,655 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/f1/64/a51f3a9afc7a8b48df5e12260a97147770c7a01cde9bea622ec1542b679b/pyobo-0.1.0-py3-none-any.whl (from 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link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/74/86/85176fa9587fb42a17fa7d942fd3e7513228838d8da1b8ccd4d92b61c495/pyobo-0.2.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,666 Found link https://files.pythonhosted.org/packages/43/15/9e745fbc81bf514d1ebb5d75cf0a9c413e85668d29dc198617511135842a/pyobo-0.2.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.2 2023-10-19T09:38:07,667 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/52/b9/c6ac012e8f2ff75cb695ed9fa24b2b6e5627c4ad5e120b81e439309799e9/pyobo-0.2.3-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,668 Found link https://files.pythonhosted.org/packages/c1/c6/3c8f9ddbd162dde3f32dcce31cf3874cb2252b4fd800547410234f1dcfd1/pyobo-0.2.3.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.3 2023-10-19T09:38:07,669 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/60/fb/68a66841d481f2c965ec1fbe5e5d51f815ad0e63b7dbeb697dc8f8c6bde8/pyobo-0.2.4-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,669 Found link https://files.pythonhosted.org/packages/17/72/9da15b783fda89d16e6b4e1b3002b1edef6a65258e8fb639609c0d3dfb41/pyobo-0.2.4.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.4 2023-10-19T09:38:07,670 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/03/40/0132f29aa34cdc8d3d625017621979f0cc783ce9f80d8cb04370417c6eb3/pyobo-0.2.5-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,671 Found link https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.5 2023-10-19T09:38:07,671 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/c0/b4/e473bd4bc0fe07387b7bdcc649a88c8908e974a7fc41d4258ca53750331f/pyobo-0.2.6-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,672 Found link https://files.pythonhosted.org/packages/f5/4d/6921ae12969e143544b82fe15b375d98d167e1970c4002e305acb9d647b6/pyobo-0.2.6.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.6 2023-10-19T09:38:07,673 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/a3/f7/e1c7b633b29ef23607a28ebb86184446a8de21406790918b800d975ff4f6/pyobo-0.2.7-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,674 Found link https://files.pythonhosted.org/packages/fc/ca/ba5a4873350af8728238e3b4f7d20b46db85ebda7e7d4d50121ec2b9b4ab/pyobo-0.2.7.tar.gz (from 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2023-10-19T09:38:07,681 Found link https://files.pythonhosted.org/packages/df/ff/20c75c9c073a565bd8c5edfbcf96b6281f0cff8cb94005395edfc247f709/pyobo-0.2.11.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.2.11 2023-10-19T09:38:07,682 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/c2/fbdcfa4cf0d2b0923a930482f22510e768a9b41a42b527c7081237d1546a/pyobo-0.2.12-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2023-10-19T09:38:07,683 Found link https://files.pythonhosted.org/packages/e0/58/d7f1e300032ce9963b260831fca7ad2ea87ba866eeb4c574484ac68f61db/pyobo-0.2.12.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.2.12 2023-10-19T09:38:07,683 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/fb/f2/7323ad8ebaa183b9c41a9dd3d3661cbc489a0c467cdc9b82a7ec4eee4972/pyobo-0.2.13-py3-none-any.whl (from https://pypi.org/simple/pyobo/) 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https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,960 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.1.0-py3-none-any.whl#sha256=78e61f4f8398440e0eb513d288ac4854ebff328398d8417dbafd34d6b9d99222 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,960 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.7-py3-none-any.whl#sha256=285d893c88b4315a10b51c4ff6a81390ae31c8109bfb2768a60a01ed56ae4a2b (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,961 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.6-py3-none-any.whl#sha256=6ccc3381e5f1199d0c23b5d7ef6ad6fe670bb02f2ac211c70d04f00662856268 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,962 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.5-py3-none-any.whl#sha256=4e1886a0db20d40c8678d8501bfc695450f800c0ca0b4e5fbbfd835a40a03772 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,962 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.4-py3-none-any.whl#sha256=c85b32484262f90bffa2fc2e8ff832b044ec28aa7bee288c54f5ee28b898de5b (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,963 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.3-py3-none-any.whl#sha256=ca6f721336e89df9ff8e2b71ea53bfa443d58d60b2d5997b3ed771f23b35b7b9 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,963 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.2-py3-none-any.whl#sha256=9c2d580cffab8a8ca4ae56b615ddb82ed18a1d7e174818557da52dba258eaa46 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-10-19T09:38:07,964 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.1-py3-none-any.whl#sha256=fa8b0bd5daff8df2ad48a133514a2b5fee29f18f806465ef49f7cc12042c4e51 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.6) 2023-10-19T09:38:07,964 Skipping link: not a file: https://www.piwheels.org/simple/pyobo/ 2023-10-19T09:38:07,965 Skipping link: not a file: https://pypi.org/simple/pyobo/ 2023-10-19T09:38:07,991 Given no hashes to check 1 links for project 'pyobo': discarding no candidates 2023-10-19T09:38:08,009 Collecting pyobo==0.10.4 2023-10-19T09:38:08,011 Created temporary directory: /tmp/pip-unpack-f9moemqo 2023-10-19T09:38:08,236 Downloading pyobo-0.10.4.tar.gz (23.1 MB) 2023-10-19T09:38:12,756 Added pyobo==0.10.4 from https://files.pythonhosted.org/packages/41/7d/876799ad139734434e01b15157622e550b4b35958f83f479a744a31c6b4a/pyobo-0.10.4.tar.gz to build tracker '/tmp/pip-build-tracker-ropw5bbd' 2023-10-19T09:38:12,761 Created temporary directory: /tmp/pip-build-env-iip_1t2n 2023-10-19T09:38:12,765 Installing build dependencies: started 2023-10-19T09:38:12,767 Running command pip subprocess to install build dependencies 2023-10-19T09:38:13,906 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-19T09:38:14,404 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-19T09:38:15,970 Collecting setuptools 2023-10-19T09:38:16,035 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-19T09:38:16,265 Collecting wheel 2023-10-19T09:38:16,282 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-19T09:38:18,851 Installing collected packages: wheel, setuptools 2023-10-19T09:38:19,084 Creating /tmp/pip-build-env-iip_1t2n/overlay/local/bin 2023-10-19T09:38:19,086 changing mode of /tmp/pip-build-env-iip_1t2n/overlay/local/bin/wheel to 755 2023-10-19T09:38:21,326 Successfully installed setuptools-68.2.2 wheel-0.41.2 2023-10-19T09:38:21,613 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-19T09:38:21,614 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-19T09:38:21,880 Installing build dependencies: finished with status 'done' 2023-10-19T09:38:21,884 Getting requirements to build wheel: started 2023-10-19T09:38:21,885 Running command Getting requirements to build wheel 2023-10-19T09:38:22,585 running egg_info 2023-10-19T09:38:22,589 writing src/pyobo.egg-info/PKG-INFO 2023-10-19T09:38:22,597 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2023-10-19T09:38:22,599 writing entry points to src/pyobo.egg-info/entry_points.txt 2023-10-19T09:38:22,603 writing requirements to src/pyobo.egg-info/requires.txt 2023-10-19T09:38:22,604 writing top-level names to src/pyobo.egg-info/top_level.txt 2023-10-19T09:38:22,635 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:22,653 reading manifest template 'MANIFEST.in' 2023-10-19T09:38:22,668 no previously-included directories found matching 'benchmarking' 2023-10-19T09:38:22,669 no previously-included directories found matching 'tests/.pytest_cache' 2023-10-19T09:38:22,744 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-10-19T09:38:22,745 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-10-19T09:38:22,747 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-10-19T09:38:22,748 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-10-19T09:38:22,750 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-10-19T09:38:22,751 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-10-19T09:38:22,752 warning: no previously-included files found matching '.bumpversion.cfg' 2023-10-19T09:38:22,753 warning: no previously-included files found matching 'Dockerfile' 2023-10-19T09:38:22,753 warning: no previously-included files found matching 'docker-compose.yml' 2023-10-19T09:38:22,755 adding license file 'LICENSE' 2023-10-19T09:38:22,767 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:22,844 Getting requirements to build wheel: finished with status 'done' 2023-10-19T09:38:22,856 Created temporary directory: /tmp/pip-modern-metadata-zy3wfxzz 2023-10-19T09:38:22,858 Preparing metadata (pyproject.toml): started 2023-10-19T09:38:22,859 Running command Preparing metadata (pyproject.toml) 2023-10-19T09:38:23,423 running dist_info 2023-10-19T09:38:23,442 creating /tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info 2023-10-19T09:38:23,446 writing /tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/PKG-INFO 2023-10-19T09:38:23,458 writing dependency_links to /tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/dependency_links.txt 2023-10-19T09:38:23,460 writing entry points to /tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/entry_points.txt 2023-10-19T09:38:23,463 writing requirements to /tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/requires.txt 2023-10-19T09:38:23,465 writing top-level names to /tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/top_level.txt 2023-10-19T09:38:23,466 writing manifest file '/tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:23,494 reading manifest file '/tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:23,497 reading manifest template 'MANIFEST.in' 2023-10-19T09:38:23,510 no previously-included directories found matching 'benchmarking' 2023-10-19T09:38:23,511 no previously-included directories found matching 'tests/.pytest_cache' 2023-10-19T09:38:23,512 no previously-included directories found matching 'docs/source/api' 2023-10-19T09:38:23,580 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-10-19T09:38:23,581 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-10-19T09:38:23,582 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-10-19T09:38:23,584 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-10-19T09:38:23,585 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-10-19T09:38:23,586 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-10-19T09:38:23,587 warning: no previously-included files found matching '.bumpversion.cfg' 2023-10-19T09:38:23,587 warning: no previously-included files found matching 'Dockerfile' 2023-10-19T09:38:23,588 warning: no previously-included files found matching 'docker-compose.yml' 2023-10-19T09:38:23,590 adding license file 'LICENSE' 2023-10-19T09:38:23,600 writing manifest file '/tmp/pip-modern-metadata-zy3wfxzz/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:23,602 creating '/tmp/pip-modern-metadata-zy3wfxzz/pyobo-0.10.4.dist-info' 2023-10-19T09:38:23,795 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-19T09:38:23,801 Source in /tmp/pip-wheel-ieoedzxv/pyobo_07ff1137d84c41888acfce380dc5244b has version 0.10.4, which satisfies requirement pyobo==0.10.4 from https://files.pythonhosted.org/packages/41/7d/876799ad139734434e01b15157622e550b4b35958f83f479a744a31c6b4a/pyobo-0.10.4.tar.gz 2023-10-19T09:38:23,802 Removed pyobo==0.10.4 from https://files.pythonhosted.org/packages/41/7d/876799ad139734434e01b15157622e550b4b35958f83f479a744a31c6b4a/pyobo-0.10.4.tar.gz from build tracker '/tmp/pip-build-tracker-ropw5bbd' 2023-10-19T09:38:23,810 Created temporary directory: /tmp/pip-unpack-aiw0m7qo 2023-10-19T09:38:23,811 Created temporary directory: /tmp/pip-unpack-gbj9r3bm 2023-10-19T09:38:23,867 Building wheels for collected packages: pyobo 2023-10-19T09:38:23,872 Created temporary directory: /tmp/pip-wheel-xarln_is 2023-10-19T09:38:23,872 Destination directory: /tmp/pip-wheel-xarln_is 2023-10-19T09:38:23,874 Building wheel for pyobo (pyproject.toml): started 2023-10-19T09:38:23,875 Running command Building wheel for pyobo (pyproject.toml) 2023-10-19T09:38:24,511 running bdist_wheel 2023-10-19T09:38:24,553 running build 2023-10-19T09:38:24,553 running build_py 2023-10-19T09:38:24,561 creating build 2023-10-19T09:38:24,561 creating build/lib 2023-10-19T09:38:24,562 creating build/lib/pyobo 2023-10-19T09:38:24,563 copying src/pyobo/__main__.py -> build/lib/pyobo 2023-10-19T09:38:24,565 copying src/pyobo/__init__.py -> build/lib/pyobo 2023-10-19T09:38:24,567 copying src/pyobo/gilda_utils.py -> build/lib/pyobo 2023-10-19T09:38:24,570 copying src/pyobo/mocks.py -> build/lib/pyobo 2023-10-19T09:38:24,571 copying src/pyobo/getters.py -> build/lib/pyobo 2023-10-19T09:38:24,574 copying src/pyobo/plugins.py -> build/lib/pyobo 2023-10-19T09:38:24,576 copying src/pyobo/normalizer.py -> build/lib/pyobo 2023-10-19T09:38:24,578 copying src/pyobo/resource_utils.py -> build/lib/pyobo 2023-10-19T09:38:24,581 copying src/pyobo/version.py -> build/lib/pyobo 2023-10-19T09:38:24,582 copying src/pyobo/aws.py -> build/lib/pyobo 2023-10-19T09:38:24,585 copying src/pyobo/constants.py -> build/lib/pyobo 2023-10-19T09:38:24,587 copying src/pyobo/obographs.py -> build/lib/pyobo 2023-10-19T09:38:24,588 copying src/pyobo/reader.py -> build/lib/pyobo 2023-10-19T09:38:24,591 copying src/pyobo/identifier_utils.py -> build/lib/pyobo 2023-10-19T09:38:24,593 creating build/lib/pyobo/ssg 2023-10-19T09:38:24,594 copying src/pyobo/ssg/__init__.py -> build/lib/pyobo/ssg 2023-10-19T09:38:24,597 creating build/lib/pyobo/utils 2023-10-19T09:38:24,598 copying src/pyobo/utils/__init__.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,600 copying src/pyobo/utils/misc.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,602 copying src/pyobo/utils/ndex_utils.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,604 copying src/pyobo/utils/path.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,606 copying src/pyobo/utils/cache.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,607 copying src/pyobo/utils/io.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,610 copying src/pyobo/utils/iter.py -> build/lib/pyobo/utils 2023-10-19T09:38:24,612 creating build/lib/pyobo/cli 2023-10-19T09:38:24,613 copying src/pyobo/cli/__init__.py -> build/lib/pyobo/cli 2023-10-19T09:38:24,614 copying src/pyobo/cli/database.py -> build/lib/pyobo/cli 2023-10-19T09:38:24,617 copying src/pyobo/cli/lookup.py -> build/lib/pyobo/cli 2023-10-19T09:38:24,619 copying src/pyobo/cli/utils.py -> build/lib/pyobo/cli 2023-10-19T09:38:24,621 copying src/pyobo/cli/aws.py -> build/lib/pyobo/cli 2023-10-19T09:38:24,622 copying src/pyobo/cli/cli.py -> build/lib/pyobo/cli 2023-10-19T09:38:24,624 creating build/lib/pyobo/xrefdb 2023-10-19T09:38:24,625 copying src/pyobo/xrefdb/xrefs_pipeline.py -> build/lib/pyobo/xrefdb 2023-10-19T09:38:24,627 copying src/pyobo/xrefdb/priority.py -> build/lib/pyobo/xrefdb 2023-10-19T09:38:24,629 copying src/pyobo/xrefdb/__init__.py -> build/lib/pyobo/xrefdb 2023-10-19T09:38:24,631 copying src/pyobo/xrefdb/canonicalizer.py -> build/lib/pyobo/xrefdb 2023-10-19T09:38:24,634 creating build/lib/pyobo/resources 2023-10-19T09:38:24,634 copying src/pyobo/resources/ro.py -> build/lib/pyobo/resources 2023-10-19T09:38:24,636 copying src/pyobo/resources/__init__.py -> build/lib/pyobo/resources 2023-10-19T09:38:24,638 copying src/pyobo/resources/ncbitaxon.py -> build/lib/pyobo/resources 2023-10-19T09:38:24,641 creating build/lib/pyobo/sources 2023-10-19T09:38:24,642 copying src/pyobo/sources/reactome.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,644 copying src/pyobo/sources/mirbase.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,646 copying src/pyobo/sources/wikipathways.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,648 copying src/pyobo/sources/chebi.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,650 copying src/pyobo/sources/mesh.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,652 copying src/pyobo/sources/agrovoc.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,654 copying src/pyobo/sources/hgncgenefamily.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,656 copying src/pyobo/sources/pid.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,658 copying src/pyobo/sources/go.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,660 copying src/pyobo/sources/icd11.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,662 copying src/pyobo/sources/cpt.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,664 copying src/pyobo/sources/drugcentral.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,665 copying src/pyobo/sources/itis.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,667 copying src/pyobo/sources/pombase.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,669 copying src/pyobo/sources/interpro.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,671 copying src/pyobo/sources/__init__.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,673 copying src/pyobo/sources/pfam.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,675 copying src/pyobo/sources/flybase.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,677 copying src/pyobo/sources/biogrid.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,679 copying src/pyobo/sources/depmap.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,680 copying src/pyobo/sources/msigdb.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,682 copying src/pyobo/sources/dictybase_gene.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,685 copying src/pyobo/sources/drugbank_salt.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,687 copying src/pyobo/sources/npass.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,688 copying src/pyobo/sources/cvx.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,691 copying src/pyobo/sources/mirbase_constants.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,692 copying src/pyobo/sources/expasy.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,694 copying src/pyobo/sources/antibodyregistry.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,696 copying src/pyobo/sources/conso.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,698 copying src/pyobo/sources/mirbase_family.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,700 copying src/pyobo/sources/sgd.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,702 copying src/pyobo/sources/rhea.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,704 copying src/pyobo/sources/complexportal.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,706 copying src/pyobo/sources/icd10.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,708 copying src/pyobo/sources/ccle.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,710 copying src/pyobo/sources/pfam_clan.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,711 copying src/pyobo/sources/utils.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,713 copying src/pyobo/sources/gwascentral_study.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,715 copying src/pyobo/sources/chembl.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,717 copying src/pyobo/sources/rgd.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,719 copying src/pyobo/sources/mgi.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,721 copying src/pyobo/sources/hgnc.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,723 copying src/pyobo/sources/cgnc.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,725 copying src/pyobo/sources/pubchem.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,727 copying src/pyobo/sources/gwascentral_phenotype.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,729 copying src/pyobo/sources/drugbank.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,731 copying src/pyobo/sources/ncbigene.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,733 copying src/pyobo/sources/gmt_utils.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,735 copying src/pyobo/sources/pathbank.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,737 copying src/pyobo/sources/mirbase_mature.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,740 copying src/pyobo/sources/slm.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,741 copying src/pyobo/sources/famplex.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,743 copying src/pyobo/sources/zfin.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,745 copying src/pyobo/sources/icd_utils.py -> build/lib/pyobo/sources 2023-10-19T09:38:24,748 creating build/lib/pyobo/registries 2023-10-19T09:38:24,749 copying src/pyobo/registries/metaregistry.py -> build/lib/pyobo/registries 2023-10-19T09:38:24,751 copying src/pyobo/registries/__init__.py -> build/lib/pyobo/registries 2023-10-19T09:38:24,753 creating build/lib/pyobo/struct 2023-10-19T09:38:24,754 copying src/pyobo/struct/struct.py -> build/lib/pyobo/struct 2023-10-19T09:38:24,757 copying src/pyobo/struct/__init__.py -> build/lib/pyobo/struct 2023-10-19T09:38:24,759 copying src/pyobo/struct/typedef.py -> build/lib/pyobo/struct 2023-10-19T09:38:24,761 copying src/pyobo/struct/utils.py -> build/lib/pyobo/struct 2023-10-19T09:38:24,762 copying src/pyobo/struct/reference.py -> build/lib/pyobo/struct 2023-10-19T09:38:24,765 creating build/lib/pyobo/api 2023-10-19T09:38:24,766 copying src/pyobo/api/alts.py -> build/lib/pyobo/api 2023-10-19T09:38:24,768 copying src/pyobo/api/__init__.py -> build/lib/pyobo/api 2023-10-19T09:38:24,770 copying src/pyobo/api/metadata.py -> build/lib/pyobo/api 2023-10-19T09:38:24,772 copying src/pyobo/api/hierarchy.py -> build/lib/pyobo/api 2023-10-19T09:38:24,774 copying src/pyobo/api/xrefs.py -> build/lib/pyobo/api 2023-10-19T09:38:24,776 copying src/pyobo/api/relations.py -> build/lib/pyobo/api 2023-10-19T09:38:24,779 copying src/pyobo/api/names.py -> build/lib/pyobo/api 2023-10-19T09:38:24,781 copying src/pyobo/api/utils.py -> build/lib/pyobo/api 2023-10-19T09:38:24,783 copying src/pyobo/api/typedefs.py -> build/lib/pyobo/api 2023-10-19T09:38:24,784 copying src/pyobo/api/properties.py -> build/lib/pyobo/api 2023-10-19T09:38:24,787 copying src/pyobo/api/species.py -> build/lib/pyobo/api 2023-10-19T09:38:24,789 creating build/lib/pyobo/apps 2023-10-19T09:38:24,790 copying src/pyobo/apps/__init__.py -> build/lib/pyobo/apps 2023-10-19T09:38:24,792 copying src/pyobo/apps/cli.py -> build/lib/pyobo/apps 2023-10-19T09:38:24,794 creating build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,795 copying src/pyobo/xrefdb/sources/cbms2019.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,796 copying src/pyobo/xrefdb/sources/gilda.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,798 copying src/pyobo/xrefdb/sources/__init__.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,799 copying src/pyobo/xrefdb/sources/wikidata.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,801 copying src/pyobo/xrefdb/sources/chembl.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,803 copying src/pyobo/xrefdb/sources/biomappings.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,804 copying src/pyobo/xrefdb/sources/intact.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,806 copying src/pyobo/xrefdb/sources/compath.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,808 copying src/pyobo/xrefdb/sources/ncit.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,810 copying src/pyobo/xrefdb/sources/pubchem.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,811 copying src/pyobo/xrefdb/sources/famplex.py -> build/lib/pyobo/xrefdb/sources 2023-10-19T09:38:24,813 creating build/lib/pyobo/sources/selventa 2023-10-19T09:38:24,814 copying src/pyobo/sources/selventa/__init__.py -> build/lib/pyobo/sources/selventa 2023-10-19T09:38:24,816 copying src/pyobo/sources/selventa/sdis.py -> build/lib/pyobo/sources/selventa 2023-10-19T09:38:24,818 copying src/pyobo/sources/selventa/scomp.py -> build/lib/pyobo/sources/selventa 2023-10-19T09:38:24,819 copying src/pyobo/sources/selventa/sfam.py -> build/lib/pyobo/sources/selventa 2023-10-19T09:38:24,821 copying src/pyobo/sources/selventa/schem.py -> build/lib/pyobo/sources/selventa 2023-10-19T09:38:24,823 creating build/lib/pyobo/sources/umls 2023-10-19T09:38:24,824 copying src/pyobo/sources/umls/__main__.py -> build/lib/pyobo/sources/umls 2023-10-19T09:38:24,826 copying src/pyobo/sources/umls/__init__.py -> build/lib/pyobo/sources/umls 2023-10-19T09:38:24,828 copying src/pyobo/sources/umls/umls.py -> build/lib/pyobo/sources/umls 2023-10-19T09:38:24,830 creating build/lib/pyobo/sources/uniprot 2023-10-19T09:38:24,831 copying src/pyobo/sources/uniprot/uniprot_ptm.py -> build/lib/pyobo/sources/uniprot 2023-10-19T09:38:24,832 copying src/pyobo/sources/uniprot/__init__.py -> build/lib/pyobo/sources/uniprot 2023-10-19T09:38:24,834 copying src/pyobo/sources/uniprot/uniprot.py -> build/lib/pyobo/sources/uniprot 2023-10-19T09:38:24,836 creating build/lib/pyobo/sources/kegg 2023-10-19T09:38:24,837 copying src/pyobo/sources/kegg/__init__.py -> build/lib/pyobo/sources/kegg 2023-10-19T09:38:24,839 copying src/pyobo/sources/kegg/genes.py -> build/lib/pyobo/sources/kegg 2023-10-19T09:38:24,841 copying src/pyobo/sources/kegg/genome.py -> build/lib/pyobo/sources/kegg 2023-10-19T09:38:24,843 copying src/pyobo/sources/kegg/pathway.py -> build/lib/pyobo/sources/kegg 2023-10-19T09:38:24,845 copying src/pyobo/sources/kegg/api.py -> build/lib/pyobo/sources/kegg 2023-10-19T09:38:24,847 creating build/lib/pyobo/apps/gilda 2023-10-19T09:38:24,848 copying src/pyobo/apps/gilda/__main__.py -> build/lib/pyobo/apps/gilda 2023-10-19T09:38:24,850 copying src/pyobo/apps/gilda/__init__.py -> build/lib/pyobo/apps/gilda 2023-10-19T09:38:24,852 copying src/pyobo/apps/gilda/app.py -> build/lib/pyobo/apps/gilda 2023-10-19T09:38:24,853 copying src/pyobo/apps/gilda/cli.py -> build/lib/pyobo/apps/gilda 2023-10-19T09:38:24,856 creating build/lib/pyobo/apps/mapper 2023-10-19T09:38:24,857 copying src/pyobo/apps/mapper/__main__.py -> build/lib/pyobo/apps/mapper 2023-10-19T09:38:24,859 copying src/pyobo/apps/mapper/__init__.py -> build/lib/pyobo/apps/mapper 2023-10-19T09:38:24,861 copying src/pyobo/apps/mapper/mapper.py -> build/lib/pyobo/apps/mapper 2023-10-19T09:38:24,862 copying src/pyobo/apps/mapper/cli.py -> build/lib/pyobo/apps/mapper 2023-10-19T09:38:24,864 running egg_info 2023-10-19T09:38:24,868 writing src/pyobo.egg-info/PKG-INFO 2023-10-19T09:38:24,876 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2023-10-19T09:38:24,878 writing entry points to src/pyobo.egg-info/entry_points.txt 2023-10-19T09:38:24,881 writing requirements to src/pyobo.egg-info/requires.txt 2023-10-19T09:38:24,882 writing top-level names to src/pyobo.egg-info/top_level.txt 2023-10-19T09:38:24,900 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:24,906 reading manifest template 'MANIFEST.in' 2023-10-19T09:38:24,919 no previously-included directories found matching 'benchmarking' 2023-10-19T09:38:24,920 no previously-included directories found matching 'tests/.pytest_cache' 2023-10-19T09:38:24,984 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-10-19T09:38:24,986 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-10-19T09:38:24,987 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-10-19T09:38:24,989 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-10-19T09:38:24,990 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-10-19T09:38:24,992 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-10-19T09:38:24,992 warning: no previously-included files found matching '.bumpversion.cfg' 2023-10-19T09:38:24,993 warning: no previously-included files found matching 'Dockerfile' 2023-10-19T09:38:24,994 warning: no previously-included files found matching 'docker-compose.yml' 2023-10-19T09:38:24,996 adding license file 'LICENSE' 2023-10-19T09:38:25,008 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-10-19T09:38:25,012 /tmp/pip-build-env-iip_1t2n/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyobo.apps.gilda.templates' is absent from the `packages` configuration. 2023-10-19T09:38:25,013 !! 2023-10-19T09:38:25,014 ******************************************************************************** 2023-10-19T09:38:25,015 ############################ 2023-10-19T09:38:25,015 # Package would be ignored # 2023-10-19T09:38:25,016 ############################ 2023-10-19T09:38:25,016 Python recognizes 'pyobo.apps.gilda.templates' as an importable package[^1], 2023-10-19T09:38:25,017 but it is absent from setuptools' `packages` configuration. 2023-10-19T09:38:25,018 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-19T09:38:25,019 package, please make sure that 'pyobo.apps.gilda.templates' is explicitly added 2023-10-19T09:38:25,019 to the `packages` configuration field. 2023-10-19T09:38:25,020 Alternatively, you can also rely on setuptools' discovery methods 2023-10-19T09:38:25,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-19T09:38:25,021 instead of `find_packages(...)`/`find:`). 2023-10-19T09:38:25,022 You can read more about "package discovery" on setuptools documentation page: 2023-10-19T09:38:25,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-19T09:38:25,024 If you don't want 'pyobo.apps.gilda.templates' to be distributed and are 2023-10-19T09:38:25,025 already explicitly excluding 'pyobo.apps.gilda.templates' via 2023-10-19T09:38:25,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-19T09:38:25,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-19T09:38:25,027 combination with a more fine grained `package-data` configuration. 2023-10-19T09:38:25,028 You can read more about "package data files" on setuptools documentation page: 2023-10-19T09:38:25,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-19T09:38:25,030 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-19T09:38:25,030 even if it does not contain any `.py` files. 2023-10-19T09:38:25,031 On the other hand, currently there is no concept of package data 2023-10-19T09:38:25,031 directory, all directories are treated like packages. 2023-10-19T09:38:25,031 ******************************************************************************** 2023-10-19T09:38:25,032 !! 2023-10-19T09:38:25,033 check.warn(importable) 2023-10-19T09:38:25,033 /tmp/pip-build-env-iip_1t2n/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyobo.apps.mapper.templates' is absent from the `packages` configuration. 2023-10-19T09:38:25,034 !! 2023-10-19T09:38:25,034 ******************************************************************************** 2023-10-19T09:38:25,035 ############################ 2023-10-19T09:38:25,035 # Package would be ignored # 2023-10-19T09:38:25,036 ############################ 2023-10-19T09:38:25,036 Python recognizes 'pyobo.apps.mapper.templates' as an importable package[^1], 2023-10-19T09:38:25,036 but it is absent from setuptools' `packages` configuration. 2023-10-19T09:38:25,037 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-19T09:38:25,038 package, please make sure that 'pyobo.apps.mapper.templates' is explicitly added 2023-10-19T09:38:25,038 to the `packages` configuration field. 2023-10-19T09:38:25,040 Alternatively, you can also rely on setuptools' discovery methods 2023-10-19T09:38:25,040 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-19T09:38:25,041 instead of `find_packages(...)`/`find:`). 2023-10-19T09:38:25,042 You can read more about "package discovery" on setuptools documentation page: 2023-10-19T09:38:25,043 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-19T09:38:25,045 If you don't want 'pyobo.apps.mapper.templates' to be distributed and are 2023-10-19T09:38:25,045 already explicitly excluding 'pyobo.apps.mapper.templates' via 2023-10-19T09:38:25,046 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-19T09:38:25,046 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-19T09:38:25,047 combination with a more fine grained `package-data` configuration. 2023-10-19T09:38:25,048 You can read more about "package data files" on setuptools documentation page: 2023-10-19T09:38:25,049 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-19T09:38:25,051 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-19T09:38:25,051 even if it does not contain any `.py` files. 2023-10-19T09:38:25,052 On the other hand, currently there is no concept of package data 2023-10-19T09:38:25,053 directory, all directories are treated like packages. 2023-10-19T09:38:25,053 ******************************************************************************** 2023-10-19T09:38:25,054 !! 2023-10-19T09:38:25,055 check.warn(importable) 2023-10-19T09:38:25,055 copying src/pyobo/ssg/base.html -> build/lib/pyobo/ssg 2023-10-19T09:38:25,056 copying src/pyobo/ssg/index.html -> build/lib/pyobo/ssg 2023-10-19T09:38:25,057 copying src/pyobo/ssg/term.html -> build/lib/pyobo/ssg 2023-10-19T09:38:25,057 copying src/pyobo/ssg/typedef.html -> build/lib/pyobo/ssg 2023-10-19T09:38:25,058 copying src/pyobo/resources/ncbitaxon.tsv.gz -> build/lib/pyobo/resources 2023-10-19T09:38:25,361 copying src/pyobo/resources/ro.tsv -> build/lib/pyobo/resources 2023-10-19T09:38:25,364 copying src/pyobo/registries/metaregistry.json -> build/lib/pyobo/registries 2023-10-19T09:38:25,367 copying src/pyobo/sources/umls/synonym_types.tsv -> build/lib/pyobo/sources/umls 2023-10-19T09:38:25,369 creating build/lib/pyobo/apps/gilda/templates 2023-10-19T09:38:25,370 copying src/pyobo/apps/gilda/templates/base.html -> build/lib/pyobo/apps/gilda/templates 2023-10-19T09:38:25,372 copying src/pyobo/apps/gilda/templates/home.html -> build/lib/pyobo/apps/gilda/templates 2023-10-19T09:38:25,374 copying src/pyobo/apps/gilda/templates/matches.html -> build/lib/pyobo/apps/gilda/templates 2023-10-19T09:38:25,376 creating build/lib/pyobo/apps/mapper/templates 2023-10-19T09:38:25,377 copying src/pyobo/apps/mapper/templates/base.html -> build/lib/pyobo/apps/mapper/templates 2023-10-19T09:38:25,379 copying src/pyobo/apps/mapper/templates/mapper_home.html -> build/lib/pyobo/apps/mapper/templates 2023-10-19T09:38:25,401 installing to build/bdist.linux-armv7l/wheel 2023-10-19T09:38:25,402 running install 2023-10-19T09:38:25,425 running install_lib 2023-10-19T09:38:25,432 creating build/bdist.linux-armv7l 2023-10-19T09:38:25,432 creating build/bdist.linux-armv7l/wheel 2023-10-19T09:38:25,435 creating build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,436 copying build/lib/pyobo/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,438 creating build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-10-19T09:38:25,439 copying build/lib/pyobo/ssg/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-10-19T09:38:25,441 copying build/lib/pyobo/ssg/base.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-10-19T09:38:25,443 copying build/lib/pyobo/ssg/term.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-10-19T09:38:25,445 copying build/lib/pyobo/ssg/index.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-10-19T09:38:25,447 copying build/lib/pyobo/ssg/typedef.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-10-19T09:38:25,450 creating build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,450 copying build/lib/pyobo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,452 copying build/lib/pyobo/utils/misc.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,454 copying build/lib/pyobo/utils/ndex_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,456 copying build/lib/pyobo/utils/path.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,459 copying build/lib/pyobo/utils/cache.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,461 copying build/lib/pyobo/utils/io.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,463 copying build/lib/pyobo/utils/iter.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-10-19T09:38:25,465 copying build/lib/pyobo/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,467 copying build/lib/pyobo/gilda_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,469 copying build/lib/pyobo/mocks.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,471 copying build/lib/pyobo/getters.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,473 copying build/lib/pyobo/plugins.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,475 copying build/lib/pyobo/normalizer.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,477 copying build/lib/pyobo/resource_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,480 creating build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,481 copying build/lib/pyobo/cli/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,483 copying build/lib/pyobo/cli/database.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,485 copying build/lib/pyobo/cli/lookup.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,487 copying build/lib/pyobo/cli/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,489 copying build/lib/pyobo/cli/aws.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,491 copying build/lib/pyobo/cli/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-10-19T09:38:25,493 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-10-19T09:38:25,494 copying build/lib/pyobo/xrefdb/xrefs_pipeline.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-10-19T09:38:25,496 copying build/lib/pyobo/xrefdb/priority.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-10-19T09:38:25,498 copying build/lib/pyobo/xrefdb/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-10-19T09:38:25,500 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,501 copying build/lib/pyobo/xrefdb/sources/cbms2019.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,503 copying build/lib/pyobo/xrefdb/sources/gilda.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,505 copying build/lib/pyobo/xrefdb/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,506 copying build/lib/pyobo/xrefdb/sources/wikidata.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,508 copying build/lib/pyobo/xrefdb/sources/chembl.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,510 copying build/lib/pyobo/xrefdb/sources/biomappings.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,512 copying build/lib/pyobo/xrefdb/sources/intact.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,513 copying build/lib/pyobo/xrefdb/sources/compath.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,515 copying build/lib/pyobo/xrefdb/sources/ncit.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,517 copying build/lib/pyobo/xrefdb/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,519 copying build/lib/pyobo/xrefdb/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-10-19T09:38:25,520 copying build/lib/pyobo/xrefdb/canonicalizer.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-10-19T09:38:25,523 copying build/lib/pyobo/version.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:25,525 creating build/bdist.linux-armv7l/wheel/pyobo/resources 2023-10-19T09:38:25,526 copying build/lib/pyobo/resources/ro.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-10-19T09:38:25,528 copying build/lib/pyobo/resources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-10-19T09:38:25,529 copying build/lib/pyobo/resources/ncbitaxon.tsv.gz -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-10-19T09:38:25,889 copying build/lib/pyobo/resources/ro.tsv -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-10-19T09:38:25,892 copying build/lib/pyobo/resources/ncbitaxon.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-10-19T09:38:25,895 creating build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,896 copying build/lib/pyobo/sources/reactome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,899 copying build/lib/pyobo/sources/mirbase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,901 copying build/lib/pyobo/sources/wikipathways.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,903 copying build/lib/pyobo/sources/chebi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,905 copying build/lib/pyobo/sources/mesh.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,908 copying build/lib/pyobo/sources/agrovoc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,909 copying build/lib/pyobo/sources/hgncgenefamily.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,911 copying build/lib/pyobo/sources/pid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,914 copying build/lib/pyobo/sources/go.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,916 copying build/lib/pyobo/sources/icd11.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,918 copying build/lib/pyobo/sources/cpt.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,920 copying build/lib/pyobo/sources/drugcentral.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,922 copying build/lib/pyobo/sources/itis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,923 copying build/lib/pyobo/sources/pombase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,925 copying build/lib/pyobo/sources/interpro.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,927 copying build/lib/pyobo/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,930 creating build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-10-19T09:38:25,931 copying build/lib/pyobo/sources/selventa/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-10-19T09:38:25,933 copying build/lib/pyobo/sources/selventa/sdis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-10-19T09:38:25,935 copying build/lib/pyobo/sources/selventa/scomp.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-10-19T09:38:25,936 copying build/lib/pyobo/sources/selventa/sfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-10-19T09:38:25,940 copying build/lib/pyobo/sources/selventa/schem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-10-19T09:38:25,941 copying build/lib/pyobo/sources/pfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,943 copying build/lib/pyobo/sources/flybase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,945 copying build/lib/pyobo/sources/biogrid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,947 copying build/lib/pyobo/sources/depmap.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,949 copying build/lib/pyobo/sources/msigdb.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,952 copying build/lib/pyobo/sources/dictybase_gene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,954 copying build/lib/pyobo/sources/drugbank_salt.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,956 copying build/lib/pyobo/sources/npass.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,958 copying build/lib/pyobo/sources/cvx.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,960 copying build/lib/pyobo/sources/mirbase_constants.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,962 copying build/lib/pyobo/sources/expasy.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,965 copying build/lib/pyobo/sources/antibodyregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,967 copying build/lib/pyobo/sources/conso.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,969 copying build/lib/pyobo/sources/mirbase_family.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,971 copying build/lib/pyobo/sources/sgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,973 copying build/lib/pyobo/sources/rhea.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,975 copying build/lib/pyobo/sources/complexportal.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,978 copying build/lib/pyobo/sources/icd10.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,979 copying build/lib/pyobo/sources/ccle.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,981 copying build/lib/pyobo/sources/pfam_clan.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,983 copying build/lib/pyobo/sources/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,985 copying build/lib/pyobo/sources/gwascentral_study.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,987 copying build/lib/pyobo/sources/chembl.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,989 copying build/lib/pyobo/sources/rgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,991 copying build/lib/pyobo/sources/mgi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,993 copying build/lib/pyobo/sources/hgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,996 copying build/lib/pyobo/sources/cgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:25,998 copying build/lib/pyobo/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,000 copying build/lib/pyobo/sources/gwascentral_phenotype.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,002 creating build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-10-19T09:38:26,003 copying build/lib/pyobo/sources/umls/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-10-19T09:38:26,005 copying build/lib/pyobo/sources/umls/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-10-19T09:38:26,007 copying build/lib/pyobo/sources/umls/umls.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-10-19T09:38:26,009 copying build/lib/pyobo/sources/umls/synonym_types.tsv -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-10-19T09:38:26,011 copying build/lib/pyobo/sources/drugbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,014 copying build/lib/pyobo/sources/ncbigene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,016 copying build/lib/pyobo/sources/gmt_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,018 creating build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-10-19T09:38:26,019 copying build/lib/pyobo/sources/uniprot/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-10-19T09:38:26,021 copying build/lib/pyobo/sources/uniprot/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-10-19T09:38:26,023 copying build/lib/pyobo/sources/uniprot/uniprot.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-10-19T09:38:26,025 copying build/lib/pyobo/sources/pathbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,027 copying build/lib/pyobo/sources/mirbase_mature.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,029 copying build/lib/pyobo/sources/slm.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,031 creating build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-10-19T09:38:26,032 copying build/lib/pyobo/sources/kegg/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-10-19T09:38:26,034 copying build/lib/pyobo/sources/kegg/genes.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-10-19T09:38:26,036 copying build/lib/pyobo/sources/kegg/genome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-10-19T09:38:26,038 copying build/lib/pyobo/sources/kegg/pathway.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-10-19T09:38:26,040 copying build/lib/pyobo/sources/kegg/api.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-10-19T09:38:26,043 copying build/lib/pyobo/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,045 copying build/lib/pyobo/sources/zfin.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,047 copying build/lib/pyobo/sources/icd_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-10-19T09:38:26,050 creating build/bdist.linux-armv7l/wheel/pyobo/registries 2023-10-19T09:38:26,050 copying build/lib/pyobo/registries/metaregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-10-19T09:38:26,053 copying build/lib/pyobo/registries/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-10-19T09:38:26,055 copying build/lib/pyobo/registries/metaregistry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-10-19T09:38:26,058 creating build/bdist.linux-armv7l/wheel/pyobo/struct 2023-10-19T09:38:26,059 copying build/lib/pyobo/struct/struct.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-10-19T09:38:26,062 copying build/lib/pyobo/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-10-19T09:38:26,064 copying build/lib/pyobo/struct/typedef.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-10-19T09:38:26,066 copying build/lib/pyobo/struct/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-10-19T09:38:26,068 copying build/lib/pyobo/struct/reference.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-10-19T09:38:26,071 copying build/lib/pyobo/aws.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:26,073 copying build/lib/pyobo/constants.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:26,075 creating build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,076 copying build/lib/pyobo/api/alts.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,078 copying build/lib/pyobo/api/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,080 copying build/lib/pyobo/api/metadata.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,082 copying build/lib/pyobo/api/hierarchy.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,084 copying build/lib/pyobo/api/xrefs.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,087 copying build/lib/pyobo/api/relations.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,089 copying build/lib/pyobo/api/names.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,091 copying build/lib/pyobo/api/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,093 copying build/lib/pyobo/api/typedefs.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,095 copying build/lib/pyobo/api/properties.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,097 copying build/lib/pyobo/api/species.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-10-19T09:38:26,099 copying build/lib/pyobo/obographs.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:26,101 copying build/lib/pyobo/reader.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:26,104 copying build/lib/pyobo/identifier_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-10-19T09:38:26,106 creating build/bdist.linux-armv7l/wheel/pyobo/apps 2023-10-19T09:38:26,108 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-10-19T09:38:26,109 copying build/lib/pyobo/apps/gilda/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-10-19T09:38:26,111 copying build/lib/pyobo/apps/gilda/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-10-19T09:38:26,113 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-10-19T09:38:26,114 copying build/lib/pyobo/apps/gilda/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-10-19T09:38:26,116 copying build/lib/pyobo/apps/gilda/templates/matches.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-10-19T09:38:26,118 copying build/lib/pyobo/apps/gilda/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-10-19T09:38:26,120 copying build/lib/pyobo/apps/gilda/app.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-10-19T09:38:26,122 copying build/lib/pyobo/apps/gilda/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-10-19T09:38:26,124 copying build/lib/pyobo/apps/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2023-10-19T09:38:26,126 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-10-19T09:38:26,127 copying build/lib/pyobo/apps/mapper/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-10-19T09:38:26,129 copying build/lib/pyobo/apps/mapper/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-10-19T09:38:26,132 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-10-19T09:38:26,133 copying build/lib/pyobo/apps/mapper/templates/mapper_home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-10-19T09:38:26,135 copying build/lib/pyobo/apps/mapper/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-10-19T09:38:26,136 copying build/lib/pyobo/apps/mapper/mapper.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-10-19T09:38:26,139 copying build/lib/pyobo/apps/mapper/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-10-19T09:38:26,141 copying build/lib/pyobo/apps/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2023-10-19T09:38:26,142 running install_egg_info 2023-10-19T09:38:26,153 Copying src/pyobo.egg-info to build/bdist.linux-armv7l/wheel/pyobo-0.10.4-py3.11.egg-info 2023-10-19T09:38:26,169 running install_scripts 2023-10-19T09:38:26,194 creating build/bdist.linux-armv7l/wheel/pyobo-0.10.4.dist-info/WHEEL 2023-10-19T09:38:26,197 creating '/tmp/pip-wheel-xarln_is/.tmp-4djba7oo/pyobo-0.10.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-19T09:38:26,200 adding 'pyobo/__init__.py' 2023-10-19T09:38:26,201 adding 'pyobo/__main__.py' 2023-10-19T09:38:26,203 adding 'pyobo/aws.py' 2023-10-19T09:38:26,204 adding 'pyobo/constants.py' 2023-10-19T09:38:26,207 adding 'pyobo/getters.py' 2023-10-19T09:38:26,208 adding 'pyobo/gilda_utils.py' 2023-10-19T09:38:26,210 adding 'pyobo/identifier_utils.py' 2023-10-19T09:38:26,211 adding 'pyobo/mocks.py' 2023-10-19T09:38:26,213 adding 'pyobo/normalizer.py' 2023-10-19T09:38:26,214 adding 'pyobo/obographs.py' 2023-10-19T09:38:26,216 adding 'pyobo/plugins.py' 2023-10-19T09:38:26,219 adding 'pyobo/reader.py' 2023-10-19T09:38:26,220 adding 'pyobo/resource_utils.py' 2023-10-19T09:38:26,221 adding 'pyobo/version.py' 2023-10-19T09:38:26,223 adding 'pyobo/api/__init__.py' 2023-10-19T09:38:26,225 adding 'pyobo/api/alts.py' 2023-10-19T09:38:26,226 adding 'pyobo/api/hierarchy.py' 2023-10-19T09:38:26,228 adding 'pyobo/api/metadata.py' 2023-10-19T09:38:26,229 adding 'pyobo/api/names.py' 2023-10-19T09:38:26,231 adding 'pyobo/api/properties.py' 2023-10-19T09:38:26,232 adding 'pyobo/api/relations.py' 2023-10-19T09:38:26,234 adding 'pyobo/api/species.py' 2023-10-19T09:38:26,235 adding 'pyobo/api/typedefs.py' 2023-10-19T09:38:26,236 adding 'pyobo/api/utils.py' 2023-10-19T09:38:26,238 adding 'pyobo/api/xrefs.py' 2023-10-19T09:38:26,239 adding 'pyobo/apps/__init__.py' 2023-10-19T09:38:26,241 adding 'pyobo/apps/cli.py' 2023-10-19T09:38:26,242 adding 'pyobo/apps/gilda/__init__.py' 2023-10-19T09:38:26,243 adding 'pyobo/apps/gilda/__main__.py' 2023-10-19T09:38:26,245 adding 'pyobo/apps/gilda/app.py' 2023-10-19T09:38:26,246 adding 'pyobo/apps/gilda/cli.py' 2023-10-19T09:38:26,248 adding 'pyobo/apps/gilda/templates/base.html' 2023-10-19T09:38:26,249 adding 'pyobo/apps/gilda/templates/home.html' 2023-10-19T09:38:26,250 adding 'pyobo/apps/gilda/templates/matches.html' 2023-10-19T09:38:26,252 adding 'pyobo/apps/mapper/__init__.py' 2023-10-19T09:38:26,254 adding 'pyobo/apps/mapper/__main__.py' 2023-10-19T09:38:26,255 adding 'pyobo/apps/mapper/cli.py' 2023-10-19T09:38:26,256 adding 'pyobo/apps/mapper/mapper.py' 2023-10-19T09:38:26,258 adding 'pyobo/apps/mapper/templates/base.html' 2023-10-19T09:38:26,260 adding 'pyobo/apps/mapper/templates/mapper_home.html' 2023-10-19T09:38:26,262 adding 'pyobo/cli/__init__.py' 2023-10-19T09:38:26,263 adding 'pyobo/cli/aws.py' 2023-10-19T09:38:26,264 adding 'pyobo/cli/cli.py' 2023-10-19T09:38:26,266 adding 'pyobo/cli/database.py' 2023-10-19T09:38:26,268 adding 'pyobo/cli/lookup.py' 2023-10-19T09:38:26,269 adding 'pyobo/cli/utils.py' 2023-10-19T09:38:26,271 adding 'pyobo/registries/__init__.py' 2023-10-19T09:38:26,273 adding 'pyobo/registries/metaregistry.json' 2023-10-19T09:38:26,275 adding 'pyobo/registries/metaregistry.py' 2023-10-19T09:38:26,276 adding 'pyobo/resources/__init__.py' 2023-10-19T09:38:26,278 adding 'pyobo/resources/ncbitaxon.py' 2023-10-19T09:38:28,866 adding 'pyobo/resources/ncbitaxon.tsv.gz' 2023-10-19T09:38:29,051 adding 'pyobo/resources/ro.py' 2023-10-19T09:38:29,054 adding 'pyobo/resources/ro.tsv' 2023-10-19T09:38:29,058 adding 'pyobo/sources/__init__.py' 2023-10-19T09:38:29,059 adding 'pyobo/sources/agrovoc.py' 2023-10-19T09:38:29,060 adding 'pyobo/sources/antibodyregistry.py' 2023-10-19T09:38:29,062 adding 'pyobo/sources/biogrid.py' 2023-10-19T09:38:29,063 adding 'pyobo/sources/ccle.py' 2023-10-19T09:38:29,064 adding 'pyobo/sources/cgnc.py' 2023-10-19T09:38:29,065 adding 'pyobo/sources/chebi.py' 2023-10-19T09:38:29,067 adding 'pyobo/sources/chembl.py' 2023-10-19T09:38:29,068 adding 'pyobo/sources/complexportal.py' 2023-10-19T09:38:29,070 adding 'pyobo/sources/conso.py' 2023-10-19T09:38:29,071 adding 'pyobo/sources/cpt.py' 2023-10-19T09:38:29,072 adding 'pyobo/sources/cvx.py' 2023-10-19T09:38:29,074 adding 'pyobo/sources/depmap.py' 2023-10-19T09:38:29,075 adding 'pyobo/sources/dictybase_gene.py' 2023-10-19T09:38:29,077 adding 'pyobo/sources/drugbank.py' 2023-10-19T09:38:29,078 adding 'pyobo/sources/drugbank_salt.py' 2023-10-19T09:38:29,079 adding 'pyobo/sources/drugcentral.py' 2023-10-19T09:38:29,081 adding 'pyobo/sources/expasy.py' 2023-10-19T09:38:29,083 adding 'pyobo/sources/famplex.py' 2023-10-19T09:38:29,084 adding 'pyobo/sources/flybase.py' 2023-10-19T09:38:29,086 adding 'pyobo/sources/gmt_utils.py' 2023-10-19T09:38:29,087 adding 'pyobo/sources/go.py' 2023-10-19T09:38:29,088 adding 'pyobo/sources/gwascentral_phenotype.py' 2023-10-19T09:38:29,089 adding 'pyobo/sources/gwascentral_study.py' 2023-10-19T09:38:29,092 adding 'pyobo/sources/hgnc.py' 2023-10-19T09:38:29,093 adding 'pyobo/sources/hgncgenefamily.py' 2023-10-19T09:38:29,094 adding 'pyobo/sources/icd10.py' 2023-10-19T09:38:29,096 adding 'pyobo/sources/icd11.py' 2023-10-19T09:38:29,097 adding 'pyobo/sources/icd_utils.py' 2023-10-19T09:38:29,099 adding 'pyobo/sources/interpro.py' 2023-10-19T09:38:29,100 adding 'pyobo/sources/itis.py' 2023-10-19T09:38:29,102 adding 'pyobo/sources/mesh.py' 2023-10-19T09:38:29,103 adding 'pyobo/sources/mgi.py' 2023-10-19T09:38:29,105 adding 'pyobo/sources/mirbase.py' 2023-10-19T09:38:29,106 adding 'pyobo/sources/mirbase_constants.py' 2023-10-19T09:38:29,107 adding 'pyobo/sources/mirbase_family.py' 2023-10-19T09:38:29,109 adding 'pyobo/sources/mirbase_mature.py' 2023-10-19T09:38:29,110 adding 'pyobo/sources/msigdb.py' 2023-10-19T09:38:29,112 adding 'pyobo/sources/ncbigene.py' 2023-10-19T09:38:29,113 adding 'pyobo/sources/npass.py' 2023-10-19T09:38:29,115 adding 'pyobo/sources/pathbank.py' 2023-10-19T09:38:29,116 adding 'pyobo/sources/pfam.py' 2023-10-19T09:38:29,118 adding 'pyobo/sources/pfam_clan.py' 2023-10-19T09:38:29,119 adding 'pyobo/sources/pid.py' 2023-10-19T09:38:29,120 adding 'pyobo/sources/pombase.py' 2023-10-19T09:38:29,122 adding 'pyobo/sources/pubchem.py' 2023-10-19T09:38:29,123 adding 'pyobo/sources/reactome.py' 2023-10-19T09:38:29,125 adding 'pyobo/sources/rgd.py' 2023-10-19T09:38:29,126 adding 'pyobo/sources/rhea.py' 2023-10-19T09:38:29,128 adding 'pyobo/sources/sgd.py' 2023-10-19T09:38:29,129 adding 'pyobo/sources/slm.py' 2023-10-19T09:38:29,130 adding 'pyobo/sources/utils.py' 2023-10-19T09:38:29,132 adding 'pyobo/sources/wikipathways.py' 2023-10-19T09:38:29,133 adding 'pyobo/sources/zfin.py' 2023-10-19T09:38:29,135 adding 'pyobo/sources/kegg/__init__.py' 2023-10-19T09:38:29,137 adding 'pyobo/sources/kegg/api.py' 2023-10-19T09:38:29,138 adding 'pyobo/sources/kegg/genes.py' 2023-10-19T09:38:29,139 adding 'pyobo/sources/kegg/genome.py' 2023-10-19T09:38:29,141 adding 'pyobo/sources/kegg/pathway.py' 2023-10-19T09:38:29,143 adding 'pyobo/sources/selventa/__init__.py' 2023-10-19T09:38:29,144 adding 'pyobo/sources/selventa/schem.py' 2023-10-19T09:38:29,145 adding 'pyobo/sources/selventa/scomp.py' 2023-10-19T09:38:29,146 adding 'pyobo/sources/selventa/sdis.py' 2023-10-19T09:38:29,148 adding 'pyobo/sources/selventa/sfam.py' 2023-10-19T09:38:29,149 adding 'pyobo/sources/umls/__init__.py' 2023-10-19T09:38:29,150 adding 'pyobo/sources/umls/__main__.py' 2023-10-19T09:38:29,152 adding 'pyobo/sources/umls/synonym_types.tsv' 2023-10-19T09:38:29,153 adding 'pyobo/sources/umls/umls.py' 2023-10-19T09:38:29,155 adding 'pyobo/sources/uniprot/__init__.py' 2023-10-19T09:38:29,156 adding 'pyobo/sources/uniprot/uniprot.py' 2023-10-19T09:38:29,158 adding 'pyobo/sources/uniprot/uniprot_ptm.py' 2023-10-19T09:38:29,160 adding 'pyobo/ssg/__init__.py' 2023-10-19T09:38:29,161 adding 'pyobo/ssg/base.html' 2023-10-19T09:38:29,162 adding 'pyobo/ssg/index.html' 2023-10-19T09:38:29,164 adding 'pyobo/ssg/term.html' 2023-10-19T09:38:29,165 adding 'pyobo/ssg/typedef.html' 2023-10-19T09:38:29,166 adding 'pyobo/struct/__init__.py' 2023-10-19T09:38:29,168 adding 'pyobo/struct/reference.py' 2023-10-19T09:38:29,173 adding 'pyobo/struct/struct.py' 2023-10-19T09:38:29,176 adding 'pyobo/struct/typedef.py' 2023-10-19T09:38:29,177 adding 'pyobo/struct/utils.py' 2023-10-19T09:38:29,179 adding 'pyobo/utils/__init__.py' 2023-10-19T09:38:29,180 adding 'pyobo/utils/cache.py' 2023-10-19T09:38:29,181 adding 'pyobo/utils/io.py' 2023-10-19T09:38:29,183 adding 'pyobo/utils/iter.py' 2023-10-19T09:38:29,184 adding 'pyobo/utils/misc.py' 2023-10-19T09:38:29,185 adding 'pyobo/utils/ndex_utils.py' 2023-10-19T09:38:29,187 adding 'pyobo/utils/path.py' 2023-10-19T09:38:29,188 adding 'pyobo/xrefdb/__init__.py' 2023-10-19T09:38:29,190 adding 'pyobo/xrefdb/canonicalizer.py' 2023-10-19T09:38:29,191 adding 'pyobo/xrefdb/priority.py' 2023-10-19T09:38:29,193 adding 'pyobo/xrefdb/xrefs_pipeline.py' 2023-10-19T09:38:29,195 adding 'pyobo/xrefdb/sources/__init__.py' 2023-10-19T09:38:29,196 adding 'pyobo/xrefdb/sources/biomappings.py' 2023-10-19T09:38:29,197 adding 'pyobo/xrefdb/sources/cbms2019.py' 2023-10-19T09:38:29,199 adding 'pyobo/xrefdb/sources/chembl.py' 2023-10-19T09:38:29,200 adding 'pyobo/xrefdb/sources/compath.py' 2023-10-19T09:38:29,201 adding 'pyobo/xrefdb/sources/famplex.py' 2023-10-19T09:38:29,202 adding 'pyobo/xrefdb/sources/gilda.py' 2023-10-19T09:38:29,204 adding 'pyobo/xrefdb/sources/intact.py' 2023-10-19T09:38:29,205 adding 'pyobo/xrefdb/sources/ncit.py' 2023-10-19T09:38:29,206 adding 'pyobo/xrefdb/sources/pubchem.py' 2023-10-19T09:38:29,208 adding 'pyobo/xrefdb/sources/wikidata.py' 2023-10-19T09:38:29,210 adding 'pyobo-0.10.4.dist-info/LICENSE' 2023-10-19T09:38:29,212 adding 'pyobo-0.10.4.dist-info/METADATA' 2023-10-19T09:38:29,213 adding 'pyobo-0.10.4.dist-info/WHEEL' 2023-10-19T09:38:29,214 adding 'pyobo-0.10.4.dist-info/entry_points.txt' 2023-10-19T09:38:29,215 adding 'pyobo-0.10.4.dist-info/top_level.txt' 2023-10-19T09:38:29,218 adding 'pyobo-0.10.4.dist-info/RECORD' 2023-10-19T09:38:29,454 removing build/bdist.linux-armv7l/wheel 2023-10-19T09:38:29,596 Building wheel for pyobo (pyproject.toml): finished with status 'done' 2023-10-19T09:38:30,126 Created wheel for pyobo: filename=pyobo-0.10.4-py3-none-any.whl size=23093481 sha256=e236f229cde0c4d8dc7393166eb158835dacce9bb46d1f276f5f3d10a170731c 2023-10-19T09:38:30,127 Stored in directory: /tmp/pip-ephem-wheel-cache-cjdo0dje/wheels/c1/8e/cf/01088fdd09e9141ca1da8c07aafb33e83c425ee985753399ac 2023-10-19T09:38:30,157 Successfully built pyobo 2023-10-19T09:38:30,676 Removed build tracker: '/tmp/pip-build-tracker-ropw5bbd'