2023-10-19T19:26:28,776 Created temporary directory: /tmp/pip-build-tracker-q6yht2c0 2023-10-19T19:26:28,777 Initialized build tracking at /tmp/pip-build-tracker-q6yht2c0 2023-10-19T19:26:28,778 Created build tracker: /tmp/pip-build-tracker-q6yht2c0 2023-10-19T19:26:28,778 Entered build tracker: /tmp/pip-build-tracker-q6yht2c0 2023-10-19T19:26:28,779 Created temporary directory: /tmp/pip-wheel-6b28iy7h 2023-10-19T19:26:28,783 Created temporary directory: /tmp/pip-ephem-wheel-cache-mpd8pgi9 2023-10-19T19:26:28,804 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-19T19:26:28,808 2 location(s) to search for versions of brighteyes-ism: 2023-10-19T19:26:28,808 * https://pypi.org/simple/brighteyes-ism/ 2023-10-19T19:26:28,808 * https://www.piwheels.org/simple/brighteyes-ism/ 2023-10-19T19:26:28,809 Fetching project page and analyzing links: https://pypi.org/simple/brighteyes-ism/ 2023-10-19T19:26:28,810 Getting page https://pypi.org/simple/brighteyes-ism/ 2023-10-19T19:26:28,811 Found index url https://pypi.org/simple/ 2023-10-19T19:26:29,033 Fetched page https://pypi.org/simple/brighteyes-ism/ as application/vnd.pypi.simple.v1+json 2023-10-19T19:26:29,040 Found link https://files.pythonhosted.org/packages/f4/e0/011daa2aa9f45d7440f6be06b4502364eb07d529d7c649caef750a3ccecc/brighteyes-ism-0.1.0.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.10), version: 0.1.0 2023-10-19T19:26:29,040 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/4f/cf/56176e9a9bb1e7a95d21e5e2916ddd6b0529296cfea865fcdcb4855b58d9/brighteyes_ism-0.1.0-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.10) 2023-10-19T19:26:29,041 Found link https://files.pythonhosted.org/packages/3f/d5/79f1041ce9a9932655851e936c010f033fa653d71626188e3c004d452eef/brighteyes-ism-0.1.1.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.10), version: 0.1.1 2023-10-19T19:26:29,042 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/82/ff/bc43d883d9194d2a9f915dd5775cb4093df13f046ea8231e58748162bb82/brighteyes_ism-0.1.1-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.10) 2023-10-19T19:26:29,043 Found link https://files.pythonhosted.org/packages/70/fd/96d860689afc78a08d43e113c0feb1cad64bee68ea6ed20894fefbed2d1a/brighteyes-ism-1.0.0.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.8), version: 1.0.0 2023-10-19T19:26:29,044 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/a7/fe/8a81360de1d15191a961b4e7091fb0c409becdc4b264a17aae61c1811430/brighteyes_ism-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.8) 2023-10-19T19:26:29,045 Found link https://files.pythonhosted.org/packages/23/6a/c8d475dc148aa519f1c436634108a5f8329f3b5d92151774f6a1d04871d2/brighteyes-ism-1.0.1.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.0.1 2023-10-19T19:26:29,045 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/0f/62/959540a20ca63bff0727f2b8db9efabed8653d757b0878790b7a282b230a/brighteyes_ism-1.0.1-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,046 Found link https://files.pythonhosted.org/packages/23/d8/67abe104467fdd1a37e9ac8857b9ee333a637b1bd7462f2b03284a7aab9a/brighteyes-ism-1.0.2.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.0.2 2023-10-19T19:26:29,047 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/f6/18/2496e418cc602b8d61563af3423140aa3b99b1a32611aa2073d5f7257851/brighteyes_ism-1.0.2-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,048 Found link https://files.pythonhosted.org/packages/fb/51/c743dbd765382353b792b86b4aad3f47b4eec11dd444fc7fce63e4e7cd15/brighteyes-ism-1.1.0.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.1.0 2023-10-19T19:26:29,049 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/ee/e1/75739980d3f0abb9b3eb7af84319c0fa953c32cc81c85dc4093c32b7e4e2/brighteyes_ism-1.1.0-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,050 Found link https://files.pythonhosted.org/packages/f0/9b/3e41ee5f3f255c5127a219fe0d57127460da73496137f4cc0ca342b675a2/brighteyes-ism-1.1.1.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.1.1 2023-10-19T19:26:29,051 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/96/4f/bed5a62ad4e5401b5ee227d180473bf7e1e109a46125c46230e374dc4e52/brighteyes_ism-1.1.1-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,051 Found link https://files.pythonhosted.org/packages/d5/60/8312ac7b6285d819835e15fd75b54d576506bc5c56f95084d592e4f49ede/brighteyes-ism-1.1.2.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.1.2 2023-10-19T19:26:29,052 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/0f/52/981cb2247ee07bd5e669401577d0c90e1e45c4f3da4b6f801398663c8849/brighteyes_ism-1.1.2-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,053 Found link https://files.pythonhosted.org/packages/55/bf/f2f7b965eb522221d3719cffd41ce34b4d8ce7a9e3db18974655843e332f/brighteyes-ism-1.2.0.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.2.0 2023-10-19T19:26:29,054 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/d0/b8/5d8d25b8fa2a277e29a515038563184d5663555b9649391b40213067f9ad/brighteyes_ism-1.2.0-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,054 Found link https://files.pythonhosted.org/packages/3f/78/3d0bbef0f898d17b8abb586f4b8d758ba5ff19cd1f52de9e6467484f7685/brighteyes-ism-1.2.1.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.2.1 2023-10-19T19:26:29,055 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/5d/50/4c0453c8cc75ce414743503ce15c0904df1a36464a2161927fc6b1cb9b42/brighteyes_ism-1.2.1-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,056 Found link https://files.pythonhosted.org/packages/5e/48/c9efc16e8ebc845d6c29e6aa1d2b02e67203631d5bdae084938232ac133c/brighteyes-ism-1.2.2.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.2.2 2023-10-19T19:26:29,057 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/72/02/4268651f5cfa34ab15a0ca3801a779c713ad2db2d93c7be58abaf25e3f35/brighteyes_ism-1.2.2-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,058 Found link https://files.pythonhosted.org/packages/71/02/2399054e381a8cfb8299bc5b4165e115f1bf652841936ee4f3a00708b03f/brighteyes-ism-1.2.3.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.2.3 2023-10-19T19:26:29,058 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/6c/ec/b2185197cb44a74c26e3428323baa16747e9012890327cdb7176dba34eab/brighteyes_ism-1.2.3-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,059 Found link https://files.pythonhosted.org/packages/08/34/3c17f2ca1e4fcfaf046a6ec52b213eafd3137fa63df382db1de86da21a68/brighteyes-ism-1.2.4.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.2.4 2023-10-19T19:26:29,060 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/7d/81/d96149f2bec48b435e25d88f975dbaf413765f5c8df2893bbf808cc66486/brighteyes_ism-1.2.4-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,061 Found link https://files.pythonhosted.org/packages/2b/9e/c3b73c8b556359fa88ab851720996058bee57febfabc214327b10b333252/brighteyes-ism-1.2.5.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.2.5 2023-10-19T19:26:29,062 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/90/31/0e11918b41b147b74ef1ef4d68b2e712909f22815d4d7ced688329ebb516/brighteyes_ism-1.2.5-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,063 Found link https://files.pythonhosted.org/packages/31/ea/da31741267ffc851007067e5554fac8592da77ab92d6e3243fba8cb4a7a5/brighteyes-ism-1.3.0.tar.gz (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7), version: 1.3.0 2023-10-19T19:26:29,063 Skipping link: No binaries permitted for brighteyes-ism: https://files.pythonhosted.org/packages/cd/0f/df554b5e2ca69643d59eb0ffcd24b73fafab820c4eb1cb8dacf44228a3d7/brighteyes_ism-1.3.0-py3-none-any.whl (from https://pypi.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,064 Fetching project page and analyzing links: https://www.piwheels.org/simple/brighteyes-ism/ 2023-10-19T19:26:29,065 Getting page https://www.piwheels.org/simple/brighteyes-ism/ 2023-10-19T19:26:29,066 Found index url https://www.piwheels.org/simple/ 2023-10-19T19:26:29,252 Fetched page https://www.piwheels.org/simple/brighteyes-ism/ as text/html 2023-10-19T19:26:29,256 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.2.5-py3-none-any.whl#sha256=74de471ace6e10e62e41bfc048bf598c5f201be0543619f9688f490713799bbd (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,257 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.2.4-py3-none-any.whl#sha256=d893f26ffd83d0e63028574298c432a3004893b83e6f94fbd4a26840f8087249 (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,257 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.2.3-py3-none-any.whl#sha256=6b17c058c3918aa46a5c45954bd3ea926043646a4419a380a390c24d921818e9 (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,258 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.2.2-py3-none-any.whl#sha256=a23b48fc34acdee72c84069468528d6a1ccc3664040ed47dd93972fcf1431237 (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,259 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.2.1-py3-none-any.whl#sha256=17f1ded7a6f621a77d8032474da0271b9651ba2bf51211606d68c615414d8835 (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,259 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.2.0-py3-none-any.whl#sha256=6ce9ca60094f3a3952321dcc245fa89928c56a9d2827419c8a1f4b2142faac97 (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,260 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.1.2-py3-none-any.whl#sha256=24a5c1a81317c2422c9bf4ea00f0e50e4e0b104ab9b0fb0b511c5c8a37987bdb (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,260 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.1.1-py3-none-any.whl#sha256=59ed5abb139e8c62040f558510cc1530326596d5e68909dfa3f40d14679706ce (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,261 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.1.0-py3-none-any.whl#sha256=9fd26f07a23b867628d57d8720fb0a8a2ab5b3f77394c41ffb7ec06fff77ab21 (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,262 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.0.2-py3-none-any.whl#sha256=bb325784575b9b2fa8c02961337ad1cf4eff060fe41a1cdf106ff0e2cb88418c (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.7) 2023-10-19T19:26:29,262 Skipping link: No binaries permitted for brighteyes-ism: https://www.piwheels.org/simple/brighteyes-ism/brighteyes_ism-1.0.0-py3-none-any.whl#sha256=a79783cd4409822d701c4ee2d5c7ed79063bbbbeaa134053b0d7eae95bbb160c (from https://www.piwheels.org/simple/brighteyes-ism/) (requires-python:>=3.8) 2023-10-19T19:26:29,263 Skipping link: not a file: https://www.piwheels.org/simple/brighteyes-ism/ 2023-10-19T19:26:29,263 Skipping link: not a file: https://pypi.org/simple/brighteyes-ism/ 2023-10-19T19:26:29,283 Given no hashes to check 1 links for project 'brighteyes-ism': discarding no candidates 2023-10-19T19:26:29,302 Collecting brighteyes-ism==1.3.0 2023-10-19T19:26:29,304 Created temporary directory: /tmp/pip-unpack-28qhdu5z 2023-10-19T19:26:29,543 Downloading brighteyes-ism-1.3.0.tar.gz (41 kB) 2023-10-19T19:26:29,659 Added brighteyes-ism==1.3.0 from https://files.pythonhosted.org/packages/31/ea/da31741267ffc851007067e5554fac8592da77ab92d6e3243fba8cb4a7a5/brighteyes-ism-1.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-q6yht2c0' 2023-10-19T19:26:29,665 Created temporary directory: /tmp/pip-build-env-fg3orjaj 2023-10-19T19:26:29,671 Installing build dependencies: started 2023-10-19T19:26:29,672 Running command pip subprocess to install build dependencies 2023-10-19T19:26:30,831 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-19T19:26:31,339 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-19T19:26:32,886 Collecting setuptools>=61.0 2023-10-19T19:26:32,951 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-19T19:26:35,555 Installing collected packages: setuptools 2023-10-19T19:26:37,790 Successfully installed setuptools-68.2.2 2023-10-19T19:26:38,064 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-19T19:26:38,064 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-19T19:26:38,344 Installing build dependencies: finished with status 'done' 2023-10-19T19:26:38,347 Getting requirements to build wheel: started 2023-10-19T19:26:38,349 Running command Getting requirements to build wheel 2023-10-19T19:26:38,921 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored. 2023-10-19T19:26:38,922 !! 2023-10-19T19:26:38,923 ******************************************************************************** 2023-10-19T19:26:38,923 ########################################################################## 2023-10-19T19:26:38,924 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-10-19T19:26:38,925 ########################################################################## 2023-10-19T19:26:38,926 The following seems to be defined outside of `pyproject.toml`: 2023-10-19T19:26:38,927 `dependencies = ['numpy', 'scipy', 'scikit-image', 'scikit-learn', 'matplotlib', 'joblib', 'poppy', 'PyCustomFocus==2.3', 'tqdm', 'h5py', 'statsmodels', 'matplotlib-scalebar']` 2023-10-19T19:26:38,928 According to the spec (see the link below), however, setuptools CANNOT 2023-10-19T19:26:38,929 consider this value unless `dependencies` is listed as `dynamic`. 2023-10-19T19:26:38,930 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-10-19T19:26:38,931 For the time being, `setuptools` will still consider the given value (as a 2023-10-19T19:26:38,931 **transitional** measure), but please note that future releases of setuptools will 2023-10-19T19:26:38,932 follow strictly the standard. 2023-10-19T19:26:38,933 To prevent this warning, you can list `dependencies` under `dynamic` or alternatively 2023-10-19T19:26:38,933 remove the `[project]` table from your file and rely entirely on other means of 2023-10-19T19:26:38,934 configuration. 2023-10-19T19:26:38,934 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-10-19T19:26:38,935 or your builds will no longer be supported. 2023-10-19T19:26:38,935 ******************************************************************************** 2023-10-19T19:26:38,936 !! 2023-10-19T19:26:38,937 _handle_missing_dynamic(dist, project_table) 2023-10-19T19:26:38,937 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `optional-dependencies` defined outside of `pyproject.toml` would be ignored. 2023-10-19T19:26:38,938 !! 2023-10-19T19:26:38,939 ******************************************************************************** 2023-10-19T19:26:38,939 ########################################################################## 2023-10-19T19:26:38,940 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-10-19T19:26:38,940 ########################################################################## 2023-10-19T19:26:38,941 The following seems to be defined outside of `pyproject.toml`: 2023-10-19T19:26:38,942 `optional-dependencies = {'testing': ['tox', 'pytest # https://docs.pytest.org/en/latest/contents.html', 'pytest-cov # https://pytest-cov.readthedocs.io/en/latest/', 'pytest-qt # https://pytest-qt.readthedocs.io/en/latest/', 'napari', 'pyqt5']}` 2023-10-19T19:26:38,945 According to the spec (see the link below), however, setuptools CANNOT 2023-10-19T19:26:38,946 consider this value unless `optional-dependencies` is listed as `dynamic`. 2023-10-19T19:26:38,948 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-10-19T19:26:38,952 For the time being, `setuptools` will still consider the given value (as a 2023-10-19T19:26:38,953 **transitional** measure), but please note that future releases of setuptools will 2023-10-19T19:26:38,953 follow strictly the standard. 2023-10-19T19:26:38,955 To prevent this warning, you can list `optional-dependencies` under `dynamic` or alternatively 2023-10-19T19:26:38,955 remove the `[project]` table from your file and rely entirely on other means of 2023-10-19T19:26:38,956 configuration. 2023-10-19T19:26:38,957 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-10-19T19:26:38,958 or your builds will no longer be supported. 2023-10-19T19:26:38,959 ******************************************************************************** 2023-10-19T19:26:38,960 !! 2023-10-19T19:26:38,960 _handle_missing_dynamic(dist, project_table) 2023-10-19T19:26:38,961 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/tmp/pip-wheel-6b28iy7h/brighteyes-ism_1e607b621f81439191f354f6c8beeb97/LICENSE.txt' cannot be found 2023-10-19T19:26:38,962 return '\n'.join( 2023-10-19T19:26:39,171 running egg_info 2023-10-19T19:26:39,175 writing src/brighteyes_ism.egg-info/PKG-INFO 2023-10-19T19:26:39,181 writing dependency_links to src/brighteyes_ism.egg-info/dependency_links.txt 2023-10-19T19:26:39,184 writing requirements to src/brighteyes_ism.egg-info/requires.txt 2023-10-19T19:26:39,185 writing top-level names to src/brighteyes_ism.egg-info/top_level.txt 2023-10-19T19:26:39,201 reading manifest file 'src/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:39,203 adding license file 'LICENSE' 2023-10-19T19:26:39,206 writing manifest file 'src/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:39,318 Getting requirements to build wheel: finished with status 'done' 2023-10-19T19:26:39,326 Installing backend dependencies: started 2023-10-19T19:26:39,327 Running command pip subprocess to install backend dependencies 2023-10-19T19:26:40,473 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-19T19:26:40,982 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-19T19:26:41,504 Collecting wheel 2023-10-19T19:26:41,520 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-19T19:26:43,782 Installing collected packages: wheel 2023-10-19T19:26:44,019 Creating /tmp/pip-build-env-fg3orjaj/normal/local/bin 2023-10-19T19:26:44,022 changing mode of /tmp/pip-build-env-fg3orjaj/normal/local/bin/wheel to 755 2023-10-19T19:26:44,035 Successfully installed wheel-0.41.2 2023-10-19T19:26:44,306 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-19T19:26:44,307 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-19T19:26:44,534 Installing backend dependencies: finished with status 'done' 2023-10-19T19:26:44,536 Created temporary directory: /tmp/pip-modern-metadata-a0389ne0 2023-10-19T19:26:44,538 Preparing metadata (pyproject.toml): started 2023-10-19T19:26:44,540 Running command Preparing metadata (pyproject.toml) 2023-10-19T19:26:45,095 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored. 2023-10-19T19:26:45,095 !! 2023-10-19T19:26:45,096 ******************************************************************************** 2023-10-19T19:26:45,097 ########################################################################## 2023-10-19T19:26:45,097 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-10-19T19:26:45,098 ########################################################################## 2023-10-19T19:26:45,099 The following seems to be defined outside of `pyproject.toml`: 2023-10-19T19:26:45,101 `dependencies = ['numpy', 'scipy', 'scikit-image', 'scikit-learn', 'matplotlib', 'joblib', 'poppy', 'PyCustomFocus==2.3', 'tqdm', 'h5py', 'statsmodels', 'matplotlib-scalebar']` 2023-10-19T19:26:45,102 According to the spec (see the link below), however, setuptools CANNOT 2023-10-19T19:26:45,102 consider this value unless `dependencies` is listed as `dynamic`. 2023-10-19T19:26:45,103 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-10-19T19:26:45,104 For the time being, `setuptools` will still consider the given value (as a 2023-10-19T19:26:45,105 **transitional** measure), but please note that future releases of setuptools will 2023-10-19T19:26:45,106 follow strictly the standard. 2023-10-19T19:26:45,107 To prevent this warning, you can list `dependencies` under `dynamic` or alternatively 2023-10-19T19:26:45,107 remove the `[project]` table from your file and rely entirely on other means of 2023-10-19T19:26:45,108 configuration. 2023-10-19T19:26:45,109 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-10-19T19:26:45,110 or your builds will no longer be supported. 2023-10-19T19:26:45,110 ******************************************************************************** 2023-10-19T19:26:45,111 !! 2023-10-19T19:26:45,112 _handle_missing_dynamic(dist, project_table) 2023-10-19T19:26:45,113 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `optional-dependencies` defined outside of `pyproject.toml` would be ignored. 2023-10-19T19:26:45,113 !! 2023-10-19T19:26:45,114 ******************************************************************************** 2023-10-19T19:26:45,115 ########################################################################## 2023-10-19T19:26:45,115 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-10-19T19:26:45,116 ########################################################################## 2023-10-19T19:26:45,117 The following seems to be defined outside of `pyproject.toml`: 2023-10-19T19:26:45,118 `optional-dependencies = {'testing': ['tox', 'pytest # https://docs.pytest.org/en/latest/contents.html', 'pytest-cov # https://pytest-cov.readthedocs.io/en/latest/', 'pytest-qt # https://pytest-qt.readthedocs.io/en/latest/', 'napari', 'pyqt5']}` 2023-10-19T19:26:45,119 According to the spec (see the link below), however, setuptools CANNOT 2023-10-19T19:26:45,119 consider this value unless `optional-dependencies` is listed as `dynamic`. 2023-10-19T19:26:45,120 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-10-19T19:26:45,121 For the time being, `setuptools` will still consider the given value (as a 2023-10-19T19:26:45,122 **transitional** measure), but please note that future releases of setuptools will 2023-10-19T19:26:45,123 follow strictly the standard. 2023-10-19T19:26:45,124 To prevent this warning, you can list `optional-dependencies` under `dynamic` or alternatively 2023-10-19T19:26:45,124 remove the `[project]` table from your file and rely entirely on other means of 2023-10-19T19:26:45,125 configuration. 2023-10-19T19:26:45,126 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-10-19T19:26:45,127 or your builds will no longer be supported. 2023-10-19T19:26:45,127 ******************************************************************************** 2023-10-19T19:26:45,128 !! 2023-10-19T19:26:45,129 _handle_missing_dynamic(dist, project_table) 2023-10-19T19:26:45,130 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/tmp/pip-wheel-6b28iy7h/brighteyes-ism_1e607b621f81439191f354f6c8beeb97/LICENSE.txt' cannot be found 2023-10-19T19:26:45,130 return '\n'.join( 2023-10-19T19:26:45,404 running dist_info 2023-10-19T19:26:45,410 creating /tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info 2023-10-19T19:26:45,414 writing /tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/PKG-INFO 2023-10-19T19:26:45,419 writing dependency_links to /tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/dependency_links.txt 2023-10-19T19:26:45,422 writing requirements to /tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/requires.txt 2023-10-19T19:26:45,423 writing top-level names to /tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/top_level.txt 2023-10-19T19:26:45,425 writing manifest file '/tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:45,442 reading manifest file '/tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:45,444 adding license file 'LICENSE' 2023-10-19T19:26:45,446 writing manifest file '/tmp/pip-modern-metadata-a0389ne0/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:45,447 creating '/tmp/pip-modern-metadata-a0389ne0/brighteyes_ism-1.3.0.dist-info' 2023-10-19T19:26:45,599 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-19T19:26:45,604 Source in /tmp/pip-wheel-6b28iy7h/brighteyes-ism_1e607b621f81439191f354f6c8beeb97 has version 1.3.0, which satisfies requirement brighteyes-ism==1.3.0 from https://files.pythonhosted.org/packages/31/ea/da31741267ffc851007067e5554fac8592da77ab92d6e3243fba8cb4a7a5/brighteyes-ism-1.3.0.tar.gz 2023-10-19T19:26:45,605 Removed brighteyes-ism==1.3.0 from https://files.pythonhosted.org/packages/31/ea/da31741267ffc851007067e5554fac8592da77ab92d6e3243fba8cb4a7a5/brighteyes-ism-1.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-q6yht2c0' 2023-10-19T19:26:45,611 Created temporary directory: /tmp/pip-unpack-0jbo__kq 2023-10-19T19:26:45,612 Created temporary directory: /tmp/pip-unpack-76p5bqj8 2023-10-19T19:26:45,644 Building wheels for collected packages: brighteyes-ism 2023-10-19T19:26:45,648 Created temporary directory: /tmp/pip-wheel-8nym_mvf 2023-10-19T19:26:45,648 Destination directory: /tmp/pip-wheel-8nym_mvf 2023-10-19T19:26:45,651 Building wheel for brighteyes-ism (pyproject.toml): started 2023-10-19T19:26:45,652 Running command Building wheel for brighteyes-ism (pyproject.toml) 2023-10-19T19:26:46,149 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `dependencies` defined outside of `pyproject.toml` would be ignored. 2023-10-19T19:26:46,149 !! 2023-10-19T19:26:46,150 ******************************************************************************** 2023-10-19T19:26:46,151 ########################################################################## 2023-10-19T19:26:46,152 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-10-19T19:26:46,152 ########################################################################## 2023-10-19T19:26:46,153 The following seems to be defined outside of `pyproject.toml`: 2023-10-19T19:26:46,155 `dependencies = ['numpy', 'scipy', 'scikit-image', 'scikit-learn', 'matplotlib', 'joblib', 'poppy', 'PyCustomFocus==2.3', 'tqdm', 'h5py', 'statsmodels', 'matplotlib-scalebar']` 2023-10-19T19:26:46,156 According to the spec (see the link below), however, setuptools CANNOT 2023-10-19T19:26:46,157 consider this value unless `dependencies` is listed as `dynamic`. 2023-10-19T19:26:46,158 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-10-19T19:26:46,159 For the time being, `setuptools` will still consider the given value (as a 2023-10-19T19:26:46,159 **transitional** measure), but please note that future releases of setuptools will 2023-10-19T19:26:46,160 follow strictly the standard. 2023-10-19T19:26:46,161 To prevent this warning, you can list `dependencies` under `dynamic` or alternatively 2023-10-19T19:26:46,162 remove the `[project]` table from your file and rely entirely on other means of 2023-10-19T19:26:46,162 configuration. 2023-10-19T19:26:46,163 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-10-19T19:26:46,164 or your builds will no longer be supported. 2023-10-19T19:26:46,165 ******************************************************************************** 2023-10-19T19:26:46,166 !! 2023-10-19T19:26:46,166 _handle_missing_dynamic(dist, project_table) 2023-10-19T19:26:46,167 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:73: _WouldIgnoreField: `optional-dependencies` defined outside of `pyproject.toml` would be ignored. 2023-10-19T19:26:46,167 !! 2023-10-19T19:26:46,169 ******************************************************************************** 2023-10-19T19:26:46,169 ########################################################################## 2023-10-19T19:26:46,170 # configuration would be ignored/result in error due to `pyproject.toml` # 2023-10-19T19:26:46,170 ########################################################################## 2023-10-19T19:26:46,172 The following seems to be defined outside of `pyproject.toml`: 2023-10-19T19:26:46,173 `optional-dependencies = {'testing': ['tox', 'pytest # https://docs.pytest.org/en/latest/contents.html', 'pytest-cov # https://pytest-cov.readthedocs.io/en/latest/', 'pytest-qt # https://pytest-qt.readthedocs.io/en/latest/', 'napari', 'pyqt5']}` 2023-10-19T19:26:46,174 According to the spec (see the link below), however, setuptools CANNOT 2023-10-19T19:26:46,174 consider this value unless `optional-dependencies` is listed as `dynamic`. 2023-10-19T19:26:46,175 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2023-10-19T19:26:46,176 For the time being, `setuptools` will still consider the given value (as a 2023-10-19T19:26:46,177 **transitional** measure), but please note that future releases of setuptools will 2023-10-19T19:26:46,178 follow strictly the standard. 2023-10-19T19:26:46,179 To prevent this warning, you can list `optional-dependencies` under `dynamic` or alternatively 2023-10-19T19:26:46,179 remove the `[project]` table from your file and rely entirely on other means of 2023-10-19T19:26:46,180 configuration. 2023-10-19T19:26:46,181 By 2023-Oct-30, you need to update your project and remove deprecated calls 2023-10-19T19:26:46,181 or your builds will no longer be supported. 2023-10-19T19:26:46,182 ******************************************************************************** 2023-10-19T19:26:46,183 !! 2023-10-19T19:26:46,184 _handle_missing_dynamic(dist, project_table) 2023-10-19T19:26:46,185 /tmp/pip-build-env-fg3orjaj/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:134: SetuptoolsWarning: File '/tmp/pip-wheel-6b28iy7h/brighteyes-ism_1e607b621f81439191f354f6c8beeb97/LICENSE.txt' cannot be found 2023-10-19T19:26:46,185 return '\n'.join( 2023-10-19T19:26:46,433 running bdist_wheel 2023-10-19T19:26:46,450 running build 2023-10-19T19:26:46,451 running build_py 2023-10-19T19:26:46,455 creating build 2023-10-19T19:26:46,456 creating build/lib 2023-10-19T19:26:46,456 creating build/lib/brighteyes_ism 2023-10-19T19:26:46,458 copying src/brighteyes_ism/__init__.py -> build/lib/brighteyes_ism 2023-10-19T19:26:46,460 creating build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,461 copying src/brighteyes_ism/analysis/__init__.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,463 copying src/brighteyes_ism/analysis/Graph_lib.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,465 copying src/brighteyes_ism/analysis/Tools_lib.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,468 copying src/brighteyes_ism/analysis/FRC_lib.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,470 copying src/brighteyes_ism/analysis/Deconv_lib.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,473 copying src/brighteyes_ism/analysis/APR_lib.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,475 copying src/brighteyes_ism/analysis/FocusISM_lib.py -> build/lib/brighteyes_ism/analysis 2023-10-19T19:26:46,478 creating build/lib/brighteyes_ism/dataio 2023-10-19T19:26:46,479 copying src/brighteyes_ism/dataio/__init__.py -> build/lib/brighteyes_ism/dataio 2023-10-19T19:26:46,481 copying src/brighteyes_ism/dataio/mcs.py -> build/lib/brighteyes_ism/dataio 2023-10-19T19:26:46,483 creating build/lib/brighteyes_ism/simulation 2023-10-19T19:26:46,485 copying src/brighteyes_ism/simulation/__init__.py -> build/lib/brighteyes_ism/simulation 2023-10-19T19:26:46,486 copying src/brighteyes_ism/simulation/Tubulin_sim.py -> build/lib/brighteyes_ism/simulation 2023-10-19T19:26:46,488 copying src/brighteyes_ism/simulation/PSF_sim.py -> build/lib/brighteyes_ism/simulation 2023-10-19T19:26:46,491 running egg_info 2023-10-19T19:26:46,494 writing src/brighteyes_ism.egg-info/PKG-INFO 2023-10-19T19:26:46,500 writing dependency_links to src/brighteyes_ism.egg-info/dependency_links.txt 2023-10-19T19:26:46,502 writing requirements to src/brighteyes_ism.egg-info/requires.txt 2023-10-19T19:26:46,503 writing top-level names to src/brighteyes_ism.egg-info/top_level.txt 2023-10-19T19:26:46,513 reading manifest file 'src/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:46,515 adding license file 'LICENSE' 2023-10-19T19:26:46,517 writing manifest file 'src/brighteyes_ism.egg-info/SOURCES.txt' 2023-10-19T19:26:46,528 installing to build/bdist.linux-armv7l/wheel 2023-10-19T19:26:46,528 running install 2023-10-19T19:26:46,552 running install_lib 2023-10-19T19:26:46,557 creating build/bdist.linux-armv7l 2023-10-19T19:26:46,557 creating build/bdist.linux-armv7l/wheel 2023-10-19T19:26:46,559 creating build/bdist.linux-armv7l/wheel/brighteyes_ism 2023-10-19T19:26:46,560 copying build/lib/brighteyes_ism/__init__.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism 2023-10-19T19:26:46,562 creating build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,563 copying build/lib/brighteyes_ism/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,565 copying build/lib/brighteyes_ism/analysis/Graph_lib.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,567 copying build/lib/brighteyes_ism/analysis/Tools_lib.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,570 copying build/lib/brighteyes_ism/analysis/FRC_lib.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,572 copying build/lib/brighteyes_ism/analysis/Deconv_lib.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,575 copying build/lib/brighteyes_ism/analysis/APR_lib.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,577 copying build/lib/brighteyes_ism/analysis/FocusISM_lib.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/analysis 2023-10-19T19:26:46,580 creating build/bdist.linux-armv7l/wheel/brighteyes_ism/dataio 2023-10-19T19:26:46,581 copying build/lib/brighteyes_ism/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/dataio 2023-10-19T19:26:46,583 copying build/lib/brighteyes_ism/dataio/mcs.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/dataio 2023-10-19T19:26:46,586 creating build/bdist.linux-armv7l/wheel/brighteyes_ism/simulation 2023-10-19T19:26:46,587 copying build/lib/brighteyes_ism/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/simulation 2023-10-19T19:26:46,590 copying build/lib/brighteyes_ism/simulation/Tubulin_sim.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/simulation 2023-10-19T19:26:46,592 copying build/lib/brighteyes_ism/simulation/PSF_sim.py -> build/bdist.linux-armv7l/wheel/brighteyes_ism/simulation 2023-10-19T19:26:46,595 running install_egg_info 2023-10-19T19:26:46,599 Copying src/brighteyes_ism.egg-info to build/bdist.linux-armv7l/wheel/brighteyes_ism-1.3.0-py3.11.egg-info 2023-10-19T19:26:46,609 running install_scripts 2023-10-19T19:26:46,629 creating build/bdist.linux-armv7l/wheel/brighteyes_ism-1.3.0.dist-info/WHEEL 2023-10-19T19:26:46,632 creating '/tmp/pip-wheel-8nym_mvf/.tmp-yrn6isnp/brighteyes_ism-1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-19T19:26:46,634 adding 'brighteyes_ism/__init__.py' 2023-10-19T19:26:46,636 adding 'brighteyes_ism/analysis/APR_lib.py' 2023-10-19T19:26:46,639 adding 'brighteyes_ism/analysis/Deconv_lib.py' 2023-10-19T19:26:46,641 adding 'brighteyes_ism/analysis/FRC_lib.py' 2023-10-19T19:26:46,643 adding 'brighteyes_ism/analysis/FocusISM_lib.py' 2023-10-19T19:26:46,646 adding 'brighteyes_ism/analysis/Graph_lib.py' 2023-10-19T19:26:46,648 adding 'brighteyes_ism/analysis/Tools_lib.py' 2023-10-19T19:26:46,650 adding 'brighteyes_ism/analysis/__init__.py' 2023-10-19T19:26:46,651 adding 'brighteyes_ism/dataio/__init__.py' 2023-10-19T19:26:46,653 adding 'brighteyes_ism/dataio/mcs.py' 2023-10-19T19:26:46,657 adding 'brighteyes_ism/simulation/PSF_sim.py' 2023-10-19T19:26:46,658 adding 'brighteyes_ism/simulation/Tubulin_sim.py' 2023-10-19T19:26:46,660 adding 'brighteyes_ism/simulation/__init__.py' 2023-10-19T19:26:46,666 adding 'brighteyes_ism-1.3.0.dist-info/LICENSE' 2023-10-19T19:26:46,668 adding 'brighteyes_ism-1.3.0.dist-info/METADATA' 2023-10-19T19:26:46,669 adding 'brighteyes_ism-1.3.0.dist-info/WHEEL' 2023-10-19T19:26:46,670 adding 'brighteyes_ism-1.3.0.dist-info/top_level.txt' 2023-10-19T19:26:46,671 adding 'brighteyes_ism-1.3.0.dist-info/RECORD' 2023-10-19T19:26:46,674 removing build/bdist.linux-armv7l/wheel 2023-10-19T19:26:46,799 Building wheel for brighteyes-ism (pyproject.toml): finished with status 'done' 2023-10-19T19:26:46,805 Created wheel for brighteyes-ism: filename=brighteyes_ism-1.3.0-py3-none-any.whl size=43717 sha256=202118b090770fc7150e472d8d6e0ac43104230e21a3a65b824b39d24efe18a5 2023-10-19T19:26:46,806 Stored in directory: /tmp/pip-ephem-wheel-cache-mpd8pgi9/wheels/70/8e/dc/a5dabafda8732a3253ed5063c448359f5b54118a3796481e6c 2023-10-19T19:26:46,819 Successfully built brighteyes-ism 2023-10-19T19:26:46,823 Removed build tracker: '/tmp/pip-build-tracker-q6yht2c0'