2023-10-19T22:46:11,141 Created temporary directory: /tmp/pip-build-tracker-tg80l8e7
2023-10-19T22:46:11,142 Initialized build tracking at /tmp/pip-build-tracker-tg80l8e7
2023-10-19T22:46:11,143 Created build tracker: /tmp/pip-build-tracker-tg80l8e7
2023-10-19T22:46:11,143 Entered build tracker: /tmp/pip-build-tracker-tg80l8e7
2023-10-19T22:46:11,144 Created temporary directory: /tmp/pip-wheel-dvwnt9in
2023-10-19T22:46:11,147 Created temporary directory: /tmp/pip-ephem-wheel-cache-k9uo8y6r
2023-10-19T22:46:11,169 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-19T22:46:11,173 2 location(s) to search for versions of hydra-rbp:
2023-10-19T22:46:11,173 * https://pypi.org/simple/hydra-rbp/
2023-10-19T22:46:11,173 * https://www.piwheels.org/simple/hydra-rbp/
2023-10-19T22:46:11,173 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2023-10-19T22:46:11,174 Getting page https://pypi.org/simple/hydra-rbp/
2023-10-19T22:46:11,176 Found index url https://pypi.org/simple/
2023-10-19T22:46:11,404 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2023-10-19T22:46:11,406   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2023-10-19T22:46:11,406 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2023-10-19T22:46:11,407 Getting page https://www.piwheels.org/simple/hydra-rbp/
2023-10-19T22:46:11,408 Found index url https://www.piwheels.org/simple/
2023-10-19T22:46:11,565 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2023-10-19T22:46:11,566 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2023-10-19T22:46:11,567 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2023-10-19T22:46:11,586 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2023-10-19T22:46:11,606 Collecting hydra-rbp==0.1.21.27
2023-10-19T22:46:11,608   Created temporary directory: /tmp/pip-unpack-4bofbuf4
2023-10-19T22:46:11,872   Downloading hydra_rbp-0.1.21.27.tar.gz (52.4 MB)
2023-10-19T22:46:30,477   Added hydra-rbp==0.1.21.27 from https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz to build tracker '/tmp/pip-build-tracker-tg80l8e7'
2023-10-19T22:46:30,479   Running setup.py (path:/tmp/pip-wheel-dvwnt9in/hydra-rbp_3822b312d7504221abde707d060d091b/setup.py) egg_info for package hydra-rbp
2023-10-19T22:46:30,480   Created temporary directory: /tmp/pip-pip-egg-info-wxq7qonw
2023-10-19T22:46:30,481   Preparing metadata (setup.py): started
2023-10-19T22:46:30,482   Running command python setup.py egg_info
2023-10-19T22:46:31,210   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-10-19T22:46:31,210   !!

2023-10-19T22:46:31,211           ********************************************************************************
2023-10-19T22:46:31,212           Requirements should be satisfied by a PEP 517 installer.
2023-10-19T22:46:31,212           If you are using pip, you can try `pip install --use-pep517`.
2023-10-19T22:46:31,213           ********************************************************************************

2023-10-19T22:46:31,214   !!
2023-10-19T22:46:31,215     dist.fetch_build_eggs(dist.setup_requires)
2023-10-19T22:46:33,870   running egg_info
2023-10-19T22:46:33,872   creating /tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info
2023-10-19T22:46:33,898   writing /tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/PKG-INFO
2023-10-19T22:46:33,902   writing dependency_links to /tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/dependency_links.txt
2023-10-19T22:46:33,904   writing entry points to /tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/entry_points.txt
2023-10-19T22:46:33,906   writing requirements to /tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/requires.txt
2023-10-19T22:46:33,907   writing top-level names to /tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/top_level.txt
2023-10-19T22:46:33,909   writing manifest file '/tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/SOURCES.txt'
2023-10-19T22:46:34,016   reading manifest file '/tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/SOURCES.txt'
2023-10-19T22:46:34,017   reading manifest template 'MANIFEST.in'
2023-10-19T22:46:34,021   adding license file 'LICENSE'
2023-10-19T22:46:34,025   writing manifest file '/tmp/pip-pip-egg-info-wxq7qonw/hydra_rbp.egg-info/SOURCES.txt'
2023-10-19T22:46:34,135   Preparing metadata (setup.py): finished with status 'done'
2023-10-19T22:46:34,139   Source in /tmp/pip-wheel-dvwnt9in/hydra-rbp_3822b312d7504221abde707d060d091b has version 0.1.21.27, which satisfies requirement hydra-rbp==0.1.21.27 from https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz
2023-10-19T22:46:34,140   Removed hydra-rbp==0.1.21.27 from https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz from build tracker '/tmp/pip-build-tracker-tg80l8e7'
2023-10-19T22:46:34,147 Created temporary directory: /tmp/pip-unpack-pwr1dnl1
2023-10-19T22:46:34,148 Created temporary directory: /tmp/pip-unpack-iv1f4nzf
2023-10-19T22:46:34,161 Building wheels for collected packages: hydra-rbp
2023-10-19T22:46:34,165   Created temporary directory: /tmp/pip-wheel-j2kmvq6d
2023-10-19T22:46:34,165   Building wheel for hydra-rbp (setup.py): started
2023-10-19T22:46:34,166   Destination directory: /tmp/pip-wheel-j2kmvq6d
2023-10-19T22:46:34,167   Running command python setup.py bdist_wheel
2023-10-19T22:46:34,872   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-10-19T22:46:34,873   !!

2023-10-19T22:46:34,874           ********************************************************************************
2023-10-19T22:46:34,875           Requirements should be satisfied by a PEP 517 installer.
2023-10-19T22:46:34,875           If you are using pip, you can try `pip install --use-pep517`.
2023-10-19T22:46:34,876           ********************************************************************************

2023-10-19T22:46:34,877   !!
2023-10-19T22:46:34,878     dist.fetch_build_eggs(dist.setup_requires)
2023-10-19T22:46:35,380   running bdist_wheel
2023-10-19T22:46:35,485   running build
2023-10-19T22:46:35,486   running build_py
2023-10-19T22:46:35,516   creating build
2023-10-19T22:46:35,516   creating build/lib
2023-10-19T22:46:35,517   creating build/lib/HydRa
2023-10-19T22:46:35,518   copying HydRa/__init__.py -> build/lib/HydRa
2023-10-19T22:46:35,520   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2023-10-19T22:46:35,524   copying HydRa/test_data_load.py -> build/lib/HydRa
2023-10-19T22:46:35,526   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2023-10-19T22:46:35,530   creating build/lib/HydRa/predictions
2023-10-19T22:46:35,531   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,537   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,540   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,543   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,548   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,553   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,559   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,562   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2023-10-19T22:46:35,573   creating build/lib/HydRa/training
2023-10-19T22:46:35,578   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2023-10-19T22:46:35,584   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2023-10-19T22:46:35,590   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2023-10-19T22:46:35,597   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2023-10-19T22:46:35,604   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2023-10-19T22:46:35,612   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2023-10-19T22:46:35,620   creating build/lib/HydRa/evaluation
2023-10-19T22:46:35,621   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2023-10-19T22:46:35,624   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2023-10-19T22:46:35,627   creating build/lib/HydRa/models
2023-10-19T22:46:35,628   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2023-10-19T22:46:35,630   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2023-10-19T22:46:35,636   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2023-10-19T22:46:35,642   creating build/lib/HydRa/preprocessing
2023-10-19T22:46:35,643   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2023-10-19T22:46:35,646   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2023-10-19T22:46:35,648   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2023-10-19T22:46:35,650   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2023-10-19T22:46:35,653   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2023-10-19T22:46:35,655   creating build/lib/HydRa/preprocessing/Feature_selection
2023-10-19T22:46:35,656   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-10-19T22:46:35,658   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-10-19T22:46:35,661   creating build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,662   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,664   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,666   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,669   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,670   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,672   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,674   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:35,676   running egg_info
2023-10-19T22:46:35,731   writing hydra_rbp.egg-info/PKG-INFO
2023-10-19T22:46:35,735   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2023-10-19T22:46:35,738   writing entry points to hydra_rbp.egg-info/entry_points.txt
2023-10-19T22:46:35,739   writing requirements to hydra_rbp.egg-info/requires.txt
2023-10-19T22:46:35,740   writing top-level names to hydra_rbp.egg-info/top_level.txt
2023-10-19T22:46:35,783   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-10-19T22:46:35,786   reading manifest template 'MANIFEST.in'
2023-10-19T22:46:35,789   adding license file 'LICENSE'
2023-10-19T22:46:35,795   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-10-19T22:46:35,797   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2023-10-19T22:46:35,798   !!

2023-10-19T22:46:35,799           ********************************************************************************
2023-10-19T22:46:35,799           ############################
2023-10-19T22:46:35,800           # Package would be ignored #
2023-10-19T22:46:35,800           ############################
2023-10-19T22:46:35,800           Python recognizes 'HydRa.data' as an importable package[^1],
2023-10-19T22:46:35,801           but it is absent from setuptools' `packages` configuration.

2023-10-19T22:46:35,802           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-19T22:46:35,802           package, please make sure that 'HydRa.data' is explicitly added
2023-10-19T22:46:35,803           to the `packages` configuration field.

2023-10-19T22:46:35,804           Alternatively, you can also rely on setuptools' discovery methods
2023-10-19T22:46:35,804           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-19T22:46:35,804           instead of `find_packages(...)`/`find:`).

2023-10-19T22:46:35,805           You can read more about "package discovery" on setuptools documentation page:

2023-10-19T22:46:35,806           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-19T22:46:35,807           If you don't want 'HydRa.data' to be distributed and are
2023-10-19T22:46:35,808           already explicitly excluding 'HydRa.data' via
2023-10-19T22:46:35,808           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-19T22:46:35,808           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-19T22:46:35,809           combination with a more fine grained `package-data` configuration.

2023-10-19T22:46:35,810           You can read more about "package data files" on setuptools documentation page:

2023-10-19T22:46:35,811           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-19T22:46:35,813           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-19T22:46:35,814                 even if it does not contain any `.py` files.
2023-10-19T22:46:35,815                 On the other hand, currently there is no concept of package data
2023-10-19T22:46:35,815                 directory, all directories are treated like packages.
2023-10-19T22:46:35,816           ********************************************************************************

2023-10-19T22:46:35,817   !!
2023-10-19T22:46:35,818     check.warn(importable)
2023-10-19T22:46:35,819   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2023-10-19T22:46:35,819   !!

2023-10-19T22:46:35,820           ********************************************************************************
2023-10-19T22:46:35,821           ############################
2023-10-19T22:46:35,821           # Package would be ignored #
2023-10-19T22:46:35,822           ############################
2023-10-19T22:46:35,824           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2023-10-19T22:46:35,831           but it is absent from setuptools' `packages` configuration.

2023-10-19T22:46:35,839           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-19T22:46:35,840           package, please make sure that 'HydRa.pre_trained' is explicitly added
2023-10-19T22:46:35,840           to the `packages` configuration field.

2023-10-19T22:46:35,841           Alternatively, you can also rely on setuptools' discovery methods
2023-10-19T22:46:35,842           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-19T22:46:35,843           instead of `find_packages(...)`/`find:`).

2023-10-19T22:46:35,844           You can read more about "package discovery" on setuptools documentation page:

2023-10-19T22:46:35,845           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-19T22:46:35,846           If you don't want 'HydRa.pre_trained' to be distributed and are
2023-10-19T22:46:35,846           already explicitly excluding 'HydRa.pre_trained' via
2023-10-19T22:46:35,847           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-19T22:46:35,847           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-19T22:46:35,848           combination with a more fine grained `package-data` configuration.

2023-10-19T22:46:35,852           You can read more about "package data files" on setuptools documentation page:

2023-10-19T22:46:35,862           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-19T22:46:35,863           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-19T22:46:35,864                 even if it does not contain any `.py` files.
2023-10-19T22:46:35,864                 On the other hand, currently there is no concept of package data
2023-10-19T22:46:35,865                 directory, all directories are treated like packages.
2023-10-19T22:46:35,865           ********************************************************************************

2023-10-19T22:46:35,866   !!
2023-10-19T22:46:35,867     check.warn(importable)
2023-10-19T22:46:35,867   creating build/lib/HydRa/data
2023-10-19T22:46:35,868   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-19T22:46:35,868   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-19T22:46:35,869   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2023-10-19T22:46:35,986   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,012   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,049   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,221   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,295   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2023-10-19T22:46:36,469   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,503   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,542   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2023-10-19T22:46:36,549   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2023-10-19T22:46:36,555   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-10-19T22:46:36,558   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2023-10-19T22:46:36,560   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2023-10-19T22:46:36,562   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2023-10-19T22:46:36,656   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-10-19T22:46:36,658   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2023-10-19T22:46:36,813   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2023-10-19T22:46:36,815   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-19T22:46:36,817   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-19T22:46:36,819   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2023-10-19T22:46:37,447   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-19T22:46:37,449   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-19T22:46:37,450   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2023-10-19T22:46:37,516   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2023-10-19T22:46:37,545   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2023-10-19T22:46:37,585   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2023-10-19T22:46:37,804   creating build/lib/HydRa/pre_trained
2023-10-19T22:46:37,805   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-19T22:46:37,834   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-19T22:46:37,862   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2023-10-19T22:46:37,864   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-10-19T22:46:37,928   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2023-10-19T22:46:37,931   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-10-19T22:46:38,034   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-19T22:46:38,038   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-19T22:46:38,042   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-10-19T22:46:38,059   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-10-19T22:46:38,075   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-10-19T22:46:41,203   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-10-19T22:46:42,932   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-19T22:46:42,932   !!

2023-10-19T22:46:42,935           ********************************************************************************
2023-10-19T22:46:42,937           Please avoid running ``setup.py`` directly.
2023-10-19T22:46:42,938           Instead, use pypa/build, pypa/installer or other
2023-10-19T22:46:42,938           standards-based tools.

2023-10-19T22:46:42,939           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-19T22:46:42,940           ********************************************************************************

2023-10-19T22:46:42,941   !!
2023-10-19T22:46:42,942     self.initialize_options()
2023-10-19T22:46:42,960   installing to build/bdist.linux-armv7l/wheel
2023-10-19T22:46:42,961   running install
2023-10-19T22:46:42,984   running install_lib
2023-10-19T22:46:43,012   creating build/bdist.linux-armv7l
2023-10-19T22:46:43,012   creating build/bdist.linux-armv7l/wheel
2023-10-19T22:46:43,014   creating build/bdist.linux-armv7l/wheel/HydRa
2023-10-19T22:46:43,016   creating build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,017   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,099   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,127   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,293   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,295   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,299   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,301   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,344   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,346   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,348   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,352   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,387   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,416   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,453   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,617   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,618   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,757   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,759   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,761   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,783   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,803   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:43,926   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,094   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,242   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,312   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,313   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,315   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,883   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-19T22:46:44,920   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-19T22:46:44,922   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,924   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,928   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,930   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,932   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,936   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,939   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,942   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,944   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-19T22:46:44,948   creating build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,949   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,951   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,954   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,957   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,960   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,962   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-19T22:46:44,965   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-19T22:46:44,968   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-10-19T22:46:44,969   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-10-19T22:46:44,971   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-10-19T22:46:44,973   creating build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-19T22:46:44,974   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-19T22:46:44,976   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-19T22:46:44,979   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-19T22:46:44,982   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-19T22:46:44,984   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-19T22:46:44,985   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-19T22:46:44,987   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-19T22:46:44,988   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-19T22:46:44,991   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-19T22:46:44,993   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-10-19T22:46:44,994   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-10-19T22:46:44,996   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-10-19T22:46:44,998   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-19T22:46:45,001   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,002   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,004   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,007   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,009   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,011   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,013   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,015   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-19T22:46:45,016   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-19T22:46:45,019   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:45,020   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:45,023   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,495   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,556   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,618   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,622   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,648   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,666   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,683   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,686   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,689   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:48,715   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-19T22:46:49,597   running install_egg_info
2023-10-19T22:46:49,626   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.27-py3.11.egg-info
2023-10-19T22:46:49,639   running install_scripts
2023-10-19T22:46:49,657   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.27.dist-info/WHEEL
2023-10-19T22:46:49,659   creating '/tmp/pip-wheel-j2kmvq6d/hydra_rbp-0.1.21.27-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-19T22:46:49,665   adding 'HydRa/HydRa2_0_predict.py'
2023-10-19T22:46:49,669   adding 'HydRa/HydRa_predict.py'
2023-10-19T22:46:49,670   adding 'HydRa/__init__.py'
2023-10-19T22:46:49,671   adding 'HydRa/test_data_load.py'
2023-10-19T22:46:50,058   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2023-10-19T22:46:50,427   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2023-10-19T22:46:52,596   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2023-10-19T22:46:53,164   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2023-10-19T22:46:53,909   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2023-10-19T22:46:57,276   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-10-19T22:46:58,482   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-10-19T22:47:01,866   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2023-10-19T22:47:02,522   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-10-19T22:47:03,102   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-10-19T22:47:03,161   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2023-10-19T22:47:03,206   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2023-10-19T22:47:03,209   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-10-19T22:47:03,211   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2023-10-19T22:47:03,212   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2023-10-19T22:47:04,327   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2023-10-19T22:47:04,367   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-10-19T22:47:06,059   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2023-10-19T22:47:06,139   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2023-10-19T22:47:06,141   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-19T22:47:06,144   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-19T22:47:09,470   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2023-10-19T22:47:09,789   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-19T22:47:09,791   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-19T22:47:11,255   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2023-10-19T22:47:11,769   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2023-10-19T22:47:12,350   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2023-10-19T22:47:14,714   adding 'HydRa/data/protVec_100d_3grams.csv'
2023-10-19T22:47:14,784   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2023-10-19T22:47:14,786   adding 'HydRa/evaluation/__init__.py'
2023-10-19T22:47:14,791   adding 'HydRa/models/DNN_seq.py'
2023-10-19T22:47:14,794   adding 'HydRa/models/Sequence_class.py'
2023-10-19T22:47:14,796   adding 'HydRa/models/__init__.py'
2023-10-19T22:47:15,026   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-10-19T22:47:15,265   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-10-19T22:47:15,280   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2023-10-19T22:47:15,892   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2023-10-19T22:47:15,927   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2023-10-19T22:47:16,537   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2023-10-19T22:47:16,575   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-10-19T22:47:16,581   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-10-19T22:47:16,678   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-10-19T22:47:16,785   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-10-19T22:47:23,066   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2023-10-19T22:47:27,017   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2023-10-19T22:47:27,557   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2023-10-19T22:47:27,562   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py'
2023-10-19T22:47:27,564   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py'
2023-10-19T22:47:27,568   adding 'HydRa/predictions/Occlusion_map.py'
2023-10-19T22:47:27,575   adding 'HydRa/predictions/Occlusion_map_v2.py'
2023-10-19T22:47:27,583   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2023-10-19T22:47:27,593   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2023-10-19T22:47:27,595   adding 'HydRa/predictions/__init__.py'
2023-10-19T22:47:27,598   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2023-10-19T22:47:27,599   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2023-10-19T22:47:27,600   adding 'HydRa/preprocessing/__init__.py'
2023-10-19T22:47:27,602   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2023-10-19T22:47:27,603   adding 'HydRa/preprocessing/predict_SS.py'
2023-10-19T22:47:27,605   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2023-10-19T22:47:27,607   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2023-10-19T22:47:27,608   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2023-10-19T22:47:27,609   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2023-10-19T22:47:27,611   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2023-10-19T22:47:27,612   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2023-10-19T22:47:27,614   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2023-10-19T22:47:27,616   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2023-10-19T22:47:27,617   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2023-10-19T22:47:27,619   adding 'HydRa/training/__init__.py'
2023-10-19T22:47:27,622   adding 'HydRa/training/train_HydRa.py'
2023-10-19T22:47:27,627   adding 'HydRa/training/train_HydRa2_0.py'
2023-10-19T22:47:27,632   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2023-10-19T22:47:27,638   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2023-10-19T22:47:27,642   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2023-10-19T22:47:27,645   adding 'hydra_rbp-0.1.21.27.dist-info/LICENSE'
2023-10-19T22:47:27,647   adding 'hydra_rbp-0.1.21.27.dist-info/METADATA'
2023-10-19T22:47:27,648   adding 'hydra_rbp-0.1.21.27.dist-info/WHEEL'
2023-10-19T22:47:27,649   adding 'hydra_rbp-0.1.21.27.dist-info/entry_points.txt'
2023-10-19T22:47:27,650   adding 'hydra_rbp-0.1.21.27.dist-info/top_level.txt'
2023-10-19T22:47:27,652   adding 'hydra_rbp-0.1.21.27.dist-info/RECORD'
2023-10-19T22:47:27,681   removing build/bdist.linux-armv7l/wheel
2023-10-19T22:47:27,940   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2023-10-19T22:47:29,182   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.27-py3-none-any.whl size=53774376 sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a
2023-10-19T22:47:29,183   Stored in directory: /tmp/pip-ephem-wheel-cache-k9uo8y6r/wheels/03/af/b4/faea35ecc7e8380e1953954e7c527f37bfc61cf8b9455c110f
2023-10-19T22:47:29,213 Successfully built hydra-rbp
2023-10-19T22:47:30,484 Removed build tracker: '/tmp/pip-build-tracker-tg80l8e7'