2023-10-20T13:06:54,068 Created temporary directory: /tmp/pip-build-tracker-0gwl_eli 2023-10-20T13:06:54,070 Initialized build tracking at /tmp/pip-build-tracker-0gwl_eli 2023-10-20T13:06:54,071 Created build tracker: /tmp/pip-build-tracker-0gwl_eli 2023-10-20T13:06:54,071 Entered build tracker: /tmp/pip-build-tracker-0gwl_eli 2023-10-20T13:06:54,072 Created temporary directory: /tmp/pip-wheel-uu82jx4e 2023-10-20T13:06:54,075 Created temporary directory: /tmp/pip-ephem-wheel-cache-9_5mahys 2023-10-20T13:06:54,098 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-20T13:06:54,101 2 location(s) to search for versions of polyply: 2023-10-20T13:06:54,101 * https://pypi.org/simple/polyply/ 2023-10-20T13:06:54,101 * https://www.piwheels.org/simple/polyply/ 2023-10-20T13:06:54,102 Fetching project page and analyzing links: https://pypi.org/simple/polyply/ 2023-10-20T13:06:54,103 Getting page https://pypi.org/simple/polyply/ 2023-10-20T13:06:54,104 Found index url https://pypi.org/simple/ 2023-10-20T13:06:54,323 Fetched page https://pypi.org/simple/polyply/ as application/vnd.pypi.simple.v1+json 2023-10-20T13:06:54,328 Found link https://files.pythonhosted.org/packages/27/d1/df68703f3e73c235e05823b59a5271657847bcccdd392075b1b1da4aa701/polyply-0.0.1.tar.gz (from https://pypi.org/simple/polyply/), version: 0.0.1 2023-10-20T13:06:54,329 Found link https://files.pythonhosted.org/packages/3f/35/d6ad36f78a4d71aac92d47e2831c4b3b339c6801c6dac6c3334a73a164c2/polyply-1.0.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.0.0 2023-10-20T13:06:54,329 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/61/c4/9393a7f82554a6c494f4c09776d48e4b83650cb2065930bcf63f0a04b3f2/polyply-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,330 Found link https://files.pythonhosted.org/packages/07/50/e2bedb4e92e97d38a55c48bb46ccdb71c31980679e7c62a756daf8ac0556/polyply-1.1.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.1.0 2023-10-20T13:06:54,330 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/b6/73/dae457005e36caeed515e0ddd6575f97b7b7ef0fa10ea58080b214f28bcb/polyply-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,331 Found link https://files.pythonhosted.org/packages/18/8e/2f4345b5870703a292c4a6935f371b133bf4296fb0c27277fc2b0e82b84a/polyply-1.2.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.0 2023-10-20T13:06:54,332 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/30/09/9a2dd9e4a932367c34dab96daa3358f525caf79281b782cc999c5d23e739/polyply-1.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,333 Found link https://files.pythonhosted.org/packages/44/2e/5a1f0589f61f2adf682da196f365578969be49e70bb5c462b804378574b8/polyply-1.2.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.2.1 2023-10-20T13:06:54,333 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/8b/5a/54052dbde396df09dd9d81aeb3c5e1b3873d7a81e387f4c45cc3e9a9aaf7/polyply-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,334 Found link https://files.pythonhosted.org/packages/4a/e1/68556867ea156a9deeceb21d415a7279beb91d865d2645f4820fa2ec18cf/polyply-1.3.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.0 2023-10-20T13:06:54,335 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/5b/42/27a59dec4af56f87c3f93920f6021fb31bb9885d2bc7b3e0f9efe883db01/polyply-1.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,335 Found link https://files.pythonhosted.org/packages/08/9b/e76f6659ecf63a5d1f11951ce10b248e4c13669aa8ca03fa9e766f21043b/polyply-1.3.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.3.1 2023-10-20T13:06:54,336 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/0f/cb/16b130082c96795791589934b925937530f9c909c544bf295069135003ca/polyply-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,337 Found link https://files.pythonhosted.org/packages/72/da/305294dabd9e3a6123018e8adabe7312ea474b0bbf45eb38c30ac96dcdd4/polyply-1.4.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.0 2023-10-20T13:06:54,338 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/f0/d9/5bf083840a5ca0f136f65a78f0cc725ef04c8c887c445d7814c97318b074/polyply-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,338 Found link https://files.pythonhosted.org/packages/ed/5f/c96ca2049310872af23fc84d0e686211d543915676f4f07fa6107956115f/polyply-1.4.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.4.1 2023-10-20T13:06:54,339 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/1b/a1/7549f3fd81c6358c73779c9c25c331d786ca17bda7269ed3d7e6654e4432/polyply-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,339 Found link https://files.pythonhosted.org/packages/6d/c1/a462e435cf2ddb6f05e485f7ed071591026c4c7f36b9f6866252e971aad7/polyply-1.5.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.5.0 2023-10-20T13:06:54,340 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/03/79/23b77e895fa5460790fe5f9ce233a6c7d1ee4d89a3ea0f97122e6a3c34f5/polyply-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,340 Found link https://files.pythonhosted.org/packages/c6/ec/80015cfd5ba57dfd4f71cda3cd78eaceb08d657c572e015644590e7d7c0d/polyply-1.6.0.tar.gz (from https://pypi.org/simple/polyply/), version: 1.6.0 2023-10-20T13:06:54,341 Skipping link: No binaries permitted for polyply: https://files.pythonhosted.org/packages/e4/af/4b0ecd250e21ebcc25b70cc7bd61c9103952831f8d45366b40aed4fd7a42/polyply-1.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/polyply/) 2023-10-20T13:06:54,342 Found link https://files.pythonhosted.org/packages/af/d6/fa0cd035f62121f0257c1c7a8c12d5ab2db6bea0657a9d0a97c248e25d89/polyply-1.6.1.tar.gz (from https://pypi.org/simple/polyply/), version: 1.6.1 2023-10-20T13:06:54,342 Fetching project page and analyzing links: https://www.piwheels.org/simple/polyply/ 2023-10-20T13:06:54,343 Getting page https://www.piwheels.org/simple/polyply/ 2023-10-20T13:06:54,344 Found index url https://www.piwheels.org/simple/ 2023-10-20T13:06:54,512 Fetched page https://www.piwheels.org/simple/polyply/ as text/html 2023-10-20T13:06:54,517 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.6.0-py2.py3-none-any.whl#sha256=5e2d380ed606af2497a87520f02c8dde400da5f2a9516f6dbdaccc81acee3213 (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,517 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.5.0-py2.py3-none-any.whl#sha256=ba6608f25a60332e2b282596b80c03684076ce91cec8ee0b79322bac515bb65c (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,518 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.1-py2.py3-none-any.whl#sha256=90886eb9dd59380a2544798fec37eb01f98a13be0438dc8a2437fd98770abb8f (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,519 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.4.0-py2.py3-none-any.whl#sha256=ff46e65cc574f03b487c291c2f039559c7ae9915d832e65d1c2f5fa064c7c4f7 (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,519 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.1-py2.py3-none-any.whl#sha256=b0b3e19fb070225282deb01f6a7ecb6ee818e5ea427d82671643c3cdfe77d223 (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,520 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.3.0-py2.py3-none-any.whl#sha256=6ba24bf0e5816a4bbca620557f3da0c72223845d343dc2aef98b62c4d82dd3bb (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,521 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.1-py2.py3-none-any.whl#sha256=477478cf7f4d673782ed4e85fc97d32eaf0f5c1d5aa5af96d33ef496c1325007 (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,521 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.2.0-py2.py3-none-any.whl#sha256=672ceb8c03418bf79a0c31ab912adb5e0767df776a7d5d867a516ea0652e6362 (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,522 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.1.0-py2.py3-none-any.whl#sha256=756c436ae0321f2499390c6bc2e19a194bb59f9a49a3a4d78e37a364a0ddcb6f (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,523 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-1.0.0-py2.py3-none-any.whl#sha256=e44f0272c9e93e8e46bed997db28dd0205d709cebd40090747e2758358abdb8c (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,523 Skipping link: No binaries permitted for polyply: https://www.piwheels.org/simple/polyply/polyply-0.0.1-py2.py3-none-any.whl#sha256=165e22dfd4680f03fe8b6a49a8d3f38918049d263c57c0e82b5fddb4bc8b294b (from https://www.piwheels.org/simple/polyply/) 2023-10-20T13:06:54,524 Skipping link: not a file: https://www.piwheels.org/simple/polyply/ 2023-10-20T13:06:54,524 Skipping link: not a file: https://pypi.org/simple/polyply/ 2023-10-20T13:06:54,544 Given no hashes to check 1 links for project 'polyply': discarding no candidates 2023-10-20T13:06:54,562 Collecting polyply==1.6.1 2023-10-20T13:06:54,564 Created temporary directory: /tmp/pip-unpack-l_x8gbmk 2023-10-20T13:06:54,817 Downloading polyply-1.6.1.tar.gz (593 kB) 2023-10-20T13:06:55,573 Added polyply==1.6.1 from https://files.pythonhosted.org/packages/af/d6/fa0cd035f62121f0257c1c7a8c12d5ab2db6bea0657a9d0a97c248e25d89/polyply-1.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-0gwl_eli' 2023-10-20T13:06:55,578 Created temporary directory: /tmp/pip-build-env-8u755pa7 2023-10-20T13:06:55,583 Installing build dependencies: started 2023-10-20T13:06:55,584 Running command pip subprocess to install build dependencies 2023-10-20T13:06:56,742 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-20T13:06:57,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-20T13:06:57,795 Collecting wheel 2023-10-20T13:06:57,812 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-20T13:06:59,123 Collecting setuptools>=30.3.0 2023-10-20T13:06:59,212 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-20T13:06:59,433 Collecting pbr 2023-10-20T13:06:59,456 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.1-py2.py3-none-any.whl (112 kB) 2023-10-20T13:07:02,050 Installing collected packages: wheel, setuptools, pbr 2023-10-20T13:07:02,286 Creating /tmp/pip-build-env-8u755pa7/overlay/local/bin 2023-10-20T13:07:02,289 changing mode of /tmp/pip-build-env-8u755pa7/overlay/local/bin/wheel to 755 2023-10-20T13:07:04,924 changing mode of /tmp/pip-build-env-8u755pa7/overlay/local/bin/pbr to 755 2023-10-20T13:07:04,946 Successfully installed pbr-5.11.1 setuptools-68.2.2 wheel-0.41.2 2023-10-20T13:07:05,225 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-20T13:07:05,226 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-20T13:07:05,501 Installing build dependencies: finished with status 'done' 2023-10-20T13:07:05,513 Getting requirements to build wheel: started 2023-10-20T13:07:05,514 Running command Getting requirements to build wheel 2023-10-20T13:07:06,036 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:06,036 !! 2023-10-20T13:07:06,037 ******************************************************************************** 2023-10-20T13:07:06,038 Usage of dash-separated 'description-content-type' will not be supported in future 2023-10-20T13:07:06,038 versions. Please use the underscore name 'description_content_type' instead. 2023-10-20T13:07:06,039 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:06,039 calls to avoid build errors in the future. 2023-10-20T13:07:06,040 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:06,041 ******************************************************************************** 2023-10-20T13:07:06,042 !! 2023-10-20T13:07:06,042 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:06,050 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:06,050 !! 2023-10-20T13:07:06,051 ******************************************************************************** 2023-10-20T13:07:06,052 Usage of dash-separated 'setup-requires' will not be supported in future 2023-10-20T13:07:06,052 versions. Please use the underscore name 'setup_requires' instead. 2023-10-20T13:07:06,054 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:06,054 calls to avoid build errors in the future. 2023-10-20T13:07:06,055 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:06,056 ******************************************************************************** 2023-10-20T13:07:06,057 !! 2023-10-20T13:07:06,058 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:06,058 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:06,059 !! 2023-10-20T13:07:06,060 ******************************************************************************** 2023-10-20T13:07:06,061 Usage of dash-separated 'install-requires' will not be supported in future 2023-10-20T13:07:06,061 versions. Please use the underscore name 'install_requires' instead. 2023-10-20T13:07:06,063 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:06,063 calls to avoid build errors in the future. 2023-10-20T13:07:06,065 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:06,065 ******************************************************************************** 2023-10-20T13:07:06,071 !! 2023-10-20T13:07:06,071 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:06,072 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:06,072 !! 2023-10-20T13:07:06,074 ******************************************************************************** 2023-10-20T13:07:06,074 Usage of dash-separated 'zip-safe' will not be supported in future 2023-10-20T13:07:06,075 versions. Please use the underscore name 'zip_safe' instead. 2023-10-20T13:07:06,076 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:06,076 calls to avoid build errors in the future. 2023-10-20T13:07:06,077 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:06,078 ******************************************************************************** 2023-10-20T13:07:06,079 !! 2023-10-20T13:07:06,080 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:06,157 Getting requirements to build wheel: finished with status 'done' 2023-10-20T13:07:06,181 Created temporary directory: /tmp/pip-modern-metadata-2tlb6t64 2023-10-20T13:07:06,183 Preparing metadata (pyproject.toml): started 2023-10-20T13:07:06,184 Running command Preparing metadata (pyproject.toml) 2023-10-20T13:07:07,117 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2023-10-20T13:07:07,117 !! 2023-10-20T13:07:07,118 ******************************************************************************** 2023-10-20T13:07:07,119 Please avoid running ``setup.py`` and ``easy_install``. 2023-10-20T13:07:07,119 Instead, use pypa/build, pypa/installer or other 2023-10-20T13:07:07,120 standards-based tools. 2023-10-20T13:07:07,121 See https://github.com/pypa/setuptools/issues/917 for details. 2023-10-20T13:07:07,121 ******************************************************************************** 2023-10-20T13:07:07,122 !! 2023-10-20T13:07:07,123 easy_install.initialize_options(self) 2023-10-20T13:07:07,123 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-20T13:07:07,124 !! 2023-10-20T13:07:07,125 ******************************************************************************** 2023-10-20T13:07:07,125 Please avoid running ``setup.py`` directly. 2023-10-20T13:07:07,126 Instead, use pypa/build, pypa/installer or other 2023-10-20T13:07:07,126 standards-based tools. 2023-10-20T13:07:07,127 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-20T13:07:07,128 ******************************************************************************** 2023-10-20T13:07:07,129 !! 2023-10-20T13:07:07,130 self.initialize_options() 2023-10-20T13:07:07,136 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:07,137 !! 2023-10-20T13:07:07,138 ******************************************************************************** 2023-10-20T13:07:07,138 Usage of dash-separated 'description-content-type' will not be supported in future 2023-10-20T13:07:07,139 versions. Please use the underscore name 'description_content_type' instead. 2023-10-20T13:07:07,140 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:07,141 calls to avoid build errors in the future. 2023-10-20T13:07:07,142 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:07,143 ******************************************************************************** 2023-10-20T13:07:07,144 !! 2023-10-20T13:07:07,144 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:07,150 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:07,151 !! 2023-10-20T13:07:07,152 ******************************************************************************** 2023-10-20T13:07:07,152 Usage of dash-separated 'setup-requires' will not be supported in future 2023-10-20T13:07:07,153 versions. Please use the underscore name 'setup_requires' instead. 2023-10-20T13:07:07,154 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:07,155 calls to avoid build errors in the future. 2023-10-20T13:07:07,156 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:07,156 ******************************************************************************** 2023-10-20T13:07:07,158 !! 2023-10-20T13:07:07,158 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:07,158 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:07,159 !! 2023-10-20T13:07:07,160 ******************************************************************************** 2023-10-20T13:07:07,160 Usage of dash-separated 'install-requires' will not be supported in future 2023-10-20T13:07:07,161 versions. Please use the underscore name 'install_requires' instead. 2023-10-20T13:07:07,162 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:07,162 calls to avoid build errors in the future. 2023-10-20T13:07:07,163 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:07,163 ******************************************************************************** 2023-10-20T13:07:07,164 !! 2023-10-20T13:07:07,165 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:07,165 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:07,166 !! 2023-10-20T13:07:07,166 ******************************************************************************** 2023-10-20T13:07:07,167 Usage of dash-separated 'zip-safe' will not be supported in future 2023-10-20T13:07:07,167 versions. Please use the underscore name 'zip_safe' instead. 2023-10-20T13:07:07,168 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:07,169 calls to avoid build errors in the future. 2023-10-20T13:07:07,170 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:07,171 ******************************************************************************** 2023-10-20T13:07:07,172 !! 2023-10-20T13:07:07,173 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:07,187 running dist_info 2023-10-20T13:07:07,189 creating /tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info 2023-10-20T13:07:07,194 writing /tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info/PKG-INFO 2023-10-20T13:07:07,200 writing dependency_links to /tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info/dependency_links.txt 2023-10-20T13:07:07,202 writing requirements to /tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info/requires.txt 2023-10-20T13:07:07,203 writing top-level names to /tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info/top_level.txt 2023-10-20T13:07:07,218 [pbr] Processing SOURCES.txt 2023-10-20T13:07:07,218 writing manifest file '/tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info/SOURCES.txt' 2023-10-20T13:07:07,301 warning: no previously-included files found matching '.gitignore' 2023-10-20T13:07:07,302 warning: no previously-included files found matching '.gitreview' 2023-10-20T13:07:07,303 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-20T13:07:07,350 adding license file 'LICENSE' 2023-10-20T13:07:07,351 adding license file 'AUTHORS' 2023-10-20T13:07:07,360 writing manifest file '/tmp/pip-modern-metadata-2tlb6t64/polyply.egg-info/SOURCES.txt' 2023-10-20T13:07:07,362 creating '/tmp/pip-modern-metadata-2tlb6t64/polyply-1.6.1.dist-info' 2023-10-20T13:07:07,427 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-10-20T13:07:07,570 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-20T13:07:07,575 Source in /tmp/pip-wheel-uu82jx4e/polyply_29c740855a324ba481a5f688dfd825a9 has version 1.6.1, which satisfies requirement polyply==1.6.1 from https://files.pythonhosted.org/packages/af/d6/fa0cd035f62121f0257c1c7a8c12d5ab2db6bea0657a9d0a97c248e25d89/polyply-1.6.1.tar.gz 2023-10-20T13:07:07,576 Removed polyply==1.6.1 from https://files.pythonhosted.org/packages/af/d6/fa0cd035f62121f0257c1c7a8c12d5ab2db6bea0657a9d0a97c248e25d89/polyply-1.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-0gwl_eli' 2023-10-20T13:07:07,581 Created temporary directory: /tmp/pip-unpack-0_nemfvn 2023-10-20T13:07:07,582 Created temporary directory: /tmp/pip-unpack-b51hfb8z 2023-10-20T13:07:07,594 Building wheels for collected packages: polyply 2023-10-20T13:07:07,598 Created temporary directory: /tmp/pip-wheel-red_q986 2023-10-20T13:07:07,599 Destination directory: /tmp/pip-wheel-red_q986 2023-10-20T13:07:07,601 Building wheel for polyply (pyproject.toml): started 2023-10-20T13:07:07,602 Running command Building wheel for polyply (pyproject.toml) 2023-10-20T13:07:08,309 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2023-10-20T13:07:08,310 !! 2023-10-20T13:07:08,311 ******************************************************************************** 2023-10-20T13:07:08,311 Please avoid running ``setup.py`` and ``easy_install``. 2023-10-20T13:07:08,312 Instead, use pypa/build, pypa/installer or other 2023-10-20T13:07:08,312 standards-based tools. 2023-10-20T13:07:08,313 See https://github.com/pypa/setuptools/issues/917 for details. 2023-10-20T13:07:08,313 ******************************************************************************** 2023-10-20T13:07:08,314 !! 2023-10-20T13:07:08,315 easy_install.initialize_options(self) 2023-10-20T13:07:08,326 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:08,326 !! 2023-10-20T13:07:08,327 ******************************************************************************** 2023-10-20T13:07:08,328 Usage of dash-separated 'description-content-type' will not be supported in future 2023-10-20T13:07:08,328 versions. Please use the underscore name 'description_content_type' instead. 2023-10-20T13:07:08,329 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:08,330 calls to avoid build errors in the future. 2023-10-20T13:07:08,331 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:08,332 ******************************************************************************** 2023-10-20T13:07:08,333 !! 2023-10-20T13:07:08,334 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:08,339 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:08,340 !! 2023-10-20T13:07:08,341 ******************************************************************************** 2023-10-20T13:07:08,342 Usage of dash-separated 'setup-requires' will not be supported in future 2023-10-20T13:07:08,342 versions. Please use the underscore name 'setup_requires' instead. 2023-10-20T13:07:08,343 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:08,344 calls to avoid build errors in the future. 2023-10-20T13:07:08,345 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:08,346 ******************************************************************************** 2023-10-20T13:07:08,347 !! 2023-10-20T13:07:08,347 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:08,348 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:08,349 !! 2023-10-20T13:07:08,350 ******************************************************************************** 2023-10-20T13:07:08,350 Usage of dash-separated 'install-requires' will not be supported in future 2023-10-20T13:07:08,351 versions. Please use the underscore name 'install_requires' instead. 2023-10-20T13:07:08,352 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:08,352 calls to avoid build errors in the future. 2023-10-20T13:07:08,353 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:08,353 ******************************************************************************** 2023-10-20T13:07:08,354 !! 2023-10-20T13:07:08,355 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:08,355 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-20T13:07:08,355 !! 2023-10-20T13:07:08,356 ******************************************************************************** 2023-10-20T13:07:08,357 Usage of dash-separated 'zip-safe' will not be supported in future 2023-10-20T13:07:08,357 versions. Please use the underscore name 'zip_safe' instead. 2023-10-20T13:07:08,358 This deprecation is overdue, please update your project and remove deprecated 2023-10-20T13:07:08,358 calls to avoid build errors in the future. 2023-10-20T13:07:08,359 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-20T13:07:08,360 ******************************************************************************** 2023-10-20T13:07:08,361 !! 2023-10-20T13:07:08,362 opt = self.warn_dash_deprecation(opt, section) 2023-10-20T13:07:08,422 running bdist_wheel 2023-10-20T13:07:08,431 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-10-20T13:07:08,447 running build 2023-10-20T13:07:08,448 running build_py 2023-10-20T13:07:08,457 creating build 2023-10-20T13:07:08,458 creating build/lib 2023-10-20T13:07:08,459 creating build/lib/polyply 2023-10-20T13:07:08,459 creating build/lib/polyply/tests 2023-10-20T13:07:08,461 copying polyply/tests/test_meta_molecule.py -> build/lib/polyply/tests 2023-10-20T13:07:08,463 copying polyply/tests/test_lib_files.py -> build/lib/polyply/tests 2023-10-20T13:07:08,465 copying polyply/tests/test_gen_coords.py -> build/lib/polyply/tests 2023-10-20T13:07:08,467 copying polyply/tests/test_top_parser.py -> build/lib/polyply/tests 2023-10-20T13:07:08,470 copying polyply/tests/test_itp_files.py -> build/lib/polyply/tests 2023-10-20T13:07:08,472 copying polyply/tests/test_build_system.py -> build/lib/polyply/tests 2023-10-20T13:07:08,474 copying polyply/tests/test_generate_templates.py -> build/lib/polyply/tests 2023-10-20T13:07:08,476 copying polyply/tests/test_build_file_parser.py -> build/lib/polyply/tests 2023-10-20T13:07:08,479 copying polyply/tests/test_load_library.py -> build/lib/polyply/tests 2023-10-20T13:07:08,481 copying polyply/tests/test_graph_utils.py -> build/lib/polyply/tests 2023-10-20T13:07:08,482 copying polyply/tests/test_gen_dna.py -> build/lib/polyply/tests 2023-10-20T13:07:08,484 copying polyply/tests/test_gen_coords_logic.py -> build/lib/polyply/tests 2023-10-20T13:07:08,486 copying polyply/tests/test_map_to_molecule.py -> build/lib/polyply/tests 2023-10-20T13:07:08,489 copying polyply/tests/test_gen_params.py -> build/lib/polyply/tests 2023-10-20T13:07:08,491 copying polyply/tests/test_linalg.py -> build/lib/polyply/tests 2023-10-20T13:07:08,493 copying polyply/tests/test_nb_engine.py -> build/lib/polyply/tests 2023-10-20T13:07:08,496 copying polyply/tests/test_backmap.py -> build/lib/polyply/tests 2023-10-20T13:07:08,498 copying polyply/tests/test_simple_seq_parsers.py -> build/lib/polyply/tests 2023-10-20T13:07:08,500 copying polyply/tests/test_random_walk.py -> build/lib/polyply/tests 2023-10-20T13:07:08,502 copying polyply/tests/test_residue_check.py -> build/lib/polyply/tests 2023-10-20T13:07:08,504 copying polyply/tests/test_polyply_input.py -> build/lib/polyply/tests 2023-10-20T13:07:08,506 copying polyply/tests/test_ff_parser.py -> build/lib/polyply/tests 2023-10-20T13:07:08,508 copying polyply/tests/test_optimize_geometry.py -> build/lib/polyply/tests 2023-10-20T13:07:08,510 copying polyply/tests/test_gen_seq.py -> build/lib/polyply/tests 2023-10-20T13:07:08,512 copying polyply/tests/test_annotate_lingads.py -> build/lib/polyply/tests 2023-10-20T13:07:08,514 copying polyply/tests/test_logging.py -> build/lib/polyply/tests 2023-10-20T13:07:08,516 copying polyply/tests/__init__.py -> build/lib/polyply/tests 2023-10-20T13:07:08,517 copying polyply/tests/example_fixtures.py -> build/lib/polyply/tests 2023-10-20T13:07:08,519 copying polyply/tests/test_restraints.py -> build/lib/polyply/tests 2023-10-20T13:07:08,521 copying polyply/tests/test_vs_builder.py -> build/lib/polyply/tests 2023-10-20T13:07:08,522 copying polyply/tests/test_persistence.py -> build/lib/polyply/tests 2023-10-20T13:07:08,525 copying polyply/tests/test_topology.py -> build/lib/polyply/tests 2023-10-20T13:07:08,527 copying polyply/tests/test_apply_links.py -> build/lib/polyply/tests 2023-10-20T13:07:08,530 creating build/lib/polyply/data 2023-10-20T13:07:08,531 copying polyply/data/__init__.py -> build/lib/polyply/data 2023-10-20T13:07:08,534 creating build/lib/polyply/src 2023-10-20T13:07:08,535 copying polyply/src/topology.py -> build/lib/polyply/src 2023-10-20T13:07:08,538 copying polyply/src/polyply_parser.py -> build/lib/polyply/src 2023-10-20T13:07:08,540 copying polyply/src/persistence.py -> build/lib/polyply/src 2023-10-20T13:07:08,542 copying polyply/src/ff_parser_sub.py -> build/lib/polyply/src 2023-10-20T13:07:08,544 copying polyply/src/minimizer.py -> build/lib/polyply/src 2023-10-20T13:07:08,546 copying polyply/src/nonbond_engine.py -> build/lib/polyply/src 2023-10-20T13:07:08,549 copying polyply/src/gen_dna.py -> build/lib/polyply/src 2023-10-20T13:07:08,551 copying polyply/src/logging.py -> build/lib/polyply/src 2023-10-20T13:07:08,552 copying polyply/src/meta_molecule.py -> build/lib/polyply/src 2023-10-20T13:07:08,555 copying polyply/src/simple_seq_parsers.py -> build/lib/polyply/src 2023-10-20T13:07:08,557 copying polyply/src/linalg_functions.py -> build/lib/polyply/src 2023-10-20T13:07:08,559 copying polyply/src/restraints.py -> build/lib/polyply/src 2023-10-20T13:07:08,561 copying polyply/src/top_parser.py -> build/lib/polyply/src 2023-10-20T13:07:08,564 copying polyply/src/virtual_site_builder.py -> build/lib/polyply/src 2023-10-20T13:07:08,566 copying polyply/src/graph_utils.py -> build/lib/polyply/src 2023-10-20T13:07:08,568 copying polyply/src/gen_seq.py -> build/lib/polyply/src 2023-10-20T13:07:08,571 copying polyply/src/check_residue_equivalence.py -> build/lib/polyply/src 2023-10-20T13:07:08,572 copying polyply/src/apply_links.py -> build/lib/polyply/src 2023-10-20T13:07:08,575 copying polyply/src/gen_itp.py -> build/lib/polyply/src 2023-10-20T13:07:08,578 copying polyply/src/build_file_parser.py -> build/lib/polyply/src 2023-10-20T13:07:08,580 copying polyply/src/processor.py -> build/lib/polyply/src 2023-10-20T13:07:08,582 copying polyply/src/generate_templates.py -> build/lib/polyply/src 2023-10-20T13:07:08,584 copying polyply/src/map_to_molecule.py -> build/lib/polyply/src 2023-10-20T13:07:08,586 copying polyply/src/gen_coords.py -> build/lib/polyply/src 2023-10-20T13:07:08,589 copying polyply/src/__init__.py -> build/lib/polyply/src 2023-10-20T13:07:08,590 copying polyply/src/apply_modifications.py -> build/lib/polyply/src 2023-10-20T13:07:08,592 copying polyply/src/annotate_ligands.py -> build/lib/polyply/src 2023-10-20T13:07:08,595 copying polyply/src/backmap.py -> build/lib/polyply/src 2023-10-20T13:07:08,597 copying polyply/src/load_library.py -> build/lib/polyply/src 2023-10-20T13:07:08,599 copying polyply/src/build_system.py -> build/lib/polyply/src 2023-10-20T13:07:08,601 copying polyply/src/random_walk.py -> build/lib/polyply/src 2023-10-20T13:07:08,604 copying polyply/__init__.py -> build/lib/polyply 2023-10-20T13:07:08,606 running egg_info 2023-10-20T13:07:08,611 writing polyply.egg-info/PKG-INFO 2023-10-20T13:07:08,615 writing dependency_links to polyply.egg-info/dependency_links.txt 2023-10-20T13:07:08,617 writing requirements to polyply.egg-info/requires.txt 2023-10-20T13:07:08,618 writing top-level names to polyply.egg-info/top_level.txt 2023-10-20T13:07:08,634 [pbr] Reusing existing SOURCES.txt 2023-10-20T13:07:08,643 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.gromos53A6' is absent from the `packages` configuration. 2023-10-20T13:07:08,643 !! 2023-10-20T13:07:08,644 ******************************************************************************** 2023-10-20T13:07:08,645 ############################ 2023-10-20T13:07:08,645 # Package would be ignored # 2023-10-20T13:07:08,645 ############################ 2023-10-20T13:07:08,646 Python recognizes 'polyply.data.gromos53A6' as an importable package[^1], 2023-10-20T13:07:08,646 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,647 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,648 package, please make sure that 'polyply.data.gromos53A6' is explicitly added 2023-10-20T13:07:08,648 to the `packages` configuration field. 2023-10-20T13:07:08,649 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,650 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,652 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,654 If you don't want 'polyply.data.gromos53A6' to be distributed and are 2023-10-20T13:07:08,655 already explicitly excluding 'polyply.data.gromos53A6' via 2023-10-20T13:07:08,656 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,656 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,657 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,658 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,659 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,660 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,661 even if it does not contain any `.py` files. 2023-10-20T13:07:08,661 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,662 directory, all directories are treated like packages. 2023-10-20T13:07:08,662 ******************************************************************************** 2023-10-20T13:07:08,663 !! 2023-10-20T13:07:08,664 check.warn(importable) 2023-10-20T13:07:08,664 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.ibi_cgm3' is absent from the `packages` configuration. 2023-10-20T13:07:08,665 !! 2023-10-20T13:07:08,666 ******************************************************************************** 2023-10-20T13:07:08,667 ############################ 2023-10-20T13:07:08,667 # Package would be ignored # 2023-10-20T13:07:08,668 ############################ 2023-10-20T13:07:08,669 Python recognizes 'polyply.data.ibi_cgm3' as an importable package[^1], 2023-10-20T13:07:08,669 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,670 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,670 package, please make sure that 'polyply.data.ibi_cgm3' is explicitly added 2023-10-20T13:07:08,671 to the `packages` configuration field. 2023-10-20T13:07:08,672 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,672 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,673 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,674 If you don't want 'polyply.data.ibi_cgm3' to be distributed and are 2023-10-20T13:07:08,675 already explicitly excluding 'polyply.data.ibi_cgm3' via 2023-10-20T13:07:08,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,676 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,676 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,677 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,677 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,679 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,679 even if it does not contain any `.py` files. 2023-10-20T13:07:08,680 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,680 directory, all directories are treated like packages. 2023-10-20T13:07:08,681 ******************************************************************************** 2023-10-20T13:07:08,682 !! 2023-10-20T13:07:08,682 check.warn(importable) 2023-10-20T13:07:08,683 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.ibi_gbcg' is absent from the `packages` configuration. 2023-10-20T13:07:08,683 !! 2023-10-20T13:07:08,685 ******************************************************************************** 2023-10-20T13:07:08,685 ############################ 2023-10-20T13:07:08,686 # Package would be ignored # 2023-10-20T13:07:08,686 ############################ 2023-10-20T13:07:08,687 Python recognizes 'polyply.data.ibi_gbcg' as an importable package[^1], 2023-10-20T13:07:08,687 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,688 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,689 package, please make sure that 'polyply.data.ibi_gbcg' is explicitly added 2023-10-20T13:07:08,689 to the `packages` configuration field. 2023-10-20T13:07:08,690 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,691 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,691 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,692 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,693 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,695 If you don't want 'polyply.data.ibi_gbcg' to be distributed and are 2023-10-20T13:07:08,695 already explicitly excluding 'polyply.data.ibi_gbcg' via 2023-10-20T13:07:08,696 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,697 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,697 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,698 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,698 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,699 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,700 even if it does not contain any `.py` files. 2023-10-20T13:07:08,700 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,700 directory, all directories are treated like packages. 2023-10-20T13:07:08,701 ******************************************************************************** 2023-10-20T13:07:08,701 !! 2023-10-20T13:07:08,702 check.warn(importable) 2023-10-20T13:07:08,702 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.martini2' is absent from the `packages` configuration. 2023-10-20T13:07:08,703 !! 2023-10-20T13:07:08,703 ******************************************************************************** 2023-10-20T13:07:08,704 ############################ 2023-10-20T13:07:08,704 # Package would be ignored # 2023-10-20T13:07:08,704 ############################ 2023-10-20T13:07:08,705 Python recognizes 'polyply.data.martini2' as an importable package[^1], 2023-10-20T13:07:08,705 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,706 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,707 package, please make sure that 'polyply.data.martini2' is explicitly added 2023-10-20T13:07:08,707 to the `packages` configuration field. 2023-10-20T13:07:08,708 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,709 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,709 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,710 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,712 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,713 If you don't want 'polyply.data.martini2' to be distributed and are 2023-10-20T13:07:08,713 already explicitly excluding 'polyply.data.martini2' via 2023-10-20T13:07:08,714 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,714 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,715 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,716 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,717 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,718 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,719 even if it does not contain any `.py` files. 2023-10-20T13:07:08,719 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,720 directory, all directories are treated like packages. 2023-10-20T13:07:08,720 ******************************************************************************** 2023-10-20T13:07:08,721 !! 2023-10-20T13:07:08,722 check.warn(importable) 2023-10-20T13:07:08,723 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.martini3' is absent from the `packages` configuration. 2023-10-20T13:07:08,723 !! 2023-10-20T13:07:08,724 ******************************************************************************** 2023-10-20T13:07:08,725 ############################ 2023-10-20T13:07:08,725 # Package would be ignored # 2023-10-20T13:07:08,725 ############################ 2023-10-20T13:07:08,726 Python recognizes 'polyply.data.martini3' as an importable package[^1], 2023-10-20T13:07:08,726 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,727 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,727 package, please make sure that 'polyply.data.martini3' is explicitly added 2023-10-20T13:07:08,727 to the `packages` configuration field. 2023-10-20T13:07:08,728 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,728 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,729 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,729 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,730 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,731 If you don't want 'polyply.data.martini3' to be distributed and are 2023-10-20T13:07:08,731 already explicitly excluding 'polyply.data.martini3' via 2023-10-20T13:07:08,732 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,732 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,733 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,733 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,736 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,736 even if it does not contain any `.py` files. 2023-10-20T13:07:08,737 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,738 directory, all directories are treated like packages. 2023-10-20T13:07:08,738 ******************************************************************************** 2023-10-20T13:07:08,740 !! 2023-10-20T13:07:08,740 check.warn(importable) 2023-10-20T13:07:08,741 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.martini3_beta' is absent from the `packages` configuration. 2023-10-20T13:07:08,742 !! 2023-10-20T13:07:08,742 ******************************************************************************** 2023-10-20T13:07:08,743 ############################ 2023-10-20T13:07:08,743 # Package would be ignored # 2023-10-20T13:07:08,744 ############################ 2023-10-20T13:07:08,744 Python recognizes 'polyply.data.martini3_beta' as an importable package[^1], 2023-10-20T13:07:08,745 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,746 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,747 package, please make sure that 'polyply.data.martini3_beta' is explicitly added 2023-10-20T13:07:08,747 to the `packages` configuration field. 2023-10-20T13:07:08,748 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,749 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,751 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,751 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,752 If you don't want 'polyply.data.martini3_beta' to be distributed and are 2023-10-20T13:07:08,752 already explicitly excluding 'polyply.data.martini3_beta' via 2023-10-20T13:07:08,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,753 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,753 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,754 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,755 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,756 even if it does not contain any `.py` files. 2023-10-20T13:07:08,757 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,757 directory, all directories are treated like packages. 2023-10-20T13:07:08,757 ******************************************************************************** 2023-10-20T13:07:08,758 !! 2023-10-20T13:07:08,759 check.warn(importable) 2023-10-20T13:07:08,759 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.oplsaaLigParGen' is absent from the `packages` configuration. 2023-10-20T13:07:08,759 !! 2023-10-20T13:07:08,760 ******************************************************************************** 2023-10-20T13:07:08,761 ############################ 2023-10-20T13:07:08,761 # Package would be ignored # 2023-10-20T13:07:08,762 ############################ 2023-10-20T13:07:08,763 Python recognizes 'polyply.data.oplsaaLigParGen' as an importable package[^1], 2023-10-20T13:07:08,763 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,764 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,765 package, please make sure that 'polyply.data.oplsaaLigParGen' is explicitly added 2023-10-20T13:07:08,765 to the `packages` configuration field. 2023-10-20T13:07:08,766 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,767 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,768 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,769 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,770 If you don't want 'polyply.data.oplsaaLigParGen' to be distributed and are 2023-10-20T13:07:08,771 already explicitly excluding 'polyply.data.oplsaaLigParGen' via 2023-10-20T13:07:08,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,772 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,772 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,773 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,774 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,776 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,777 even if it does not contain any `.py` files. 2023-10-20T13:07:08,777 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,778 directory, all directories are treated like packages. 2023-10-20T13:07:08,778 ******************************************************************************** 2023-10-20T13:07:08,779 !! 2023-10-20T13:07:08,779 check.warn(importable) 2023-10-20T13:07:08,780 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.data.parmbsc1' is absent from the `packages` configuration. 2023-10-20T13:07:08,780 !! 2023-10-20T13:07:08,781 ******************************************************************************** 2023-10-20T13:07:08,781 ############################ 2023-10-20T13:07:08,781 # Package would be ignored # 2023-10-20T13:07:08,782 ############################ 2023-10-20T13:07:08,782 Python recognizes 'polyply.data.parmbsc1' as an importable package[^1], 2023-10-20T13:07:08,783 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,783 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,784 package, please make sure that 'polyply.data.parmbsc1' is explicitly added 2023-10-20T13:07:08,784 to the `packages` configuration field. 2023-10-20T13:07:08,785 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,786 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,787 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,789 If you don't want 'polyply.data.parmbsc1' to be distributed and are 2023-10-20T13:07:08,789 already explicitly excluding 'polyply.data.parmbsc1' via 2023-10-20T13:07:08,790 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,791 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,791 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,792 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,793 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,795 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,796 even if it does not contain any `.py` files. 2023-10-20T13:07:08,796 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,797 directory, all directories are treated like packages. 2023-10-20T13:07:08,797 ******************************************************************************** 2023-10-20T13:07:08,798 !! 2023-10-20T13:07:08,798 check.warn(importable) 2023-10-20T13:07:08,799 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.ff' is absent from the `packages` configuration. 2023-10-20T13:07:08,799 !! 2023-10-20T13:07:08,800 ******************************************************************************** 2023-10-20T13:07:08,801 ############################ 2023-10-20T13:07:08,802 # Package would be ignored # 2023-10-20T13:07:08,802 ############################ 2023-10-20T13:07:08,803 Python recognizes 'polyply.tests.test_data.ff' as an importable package[^1], 2023-10-20T13:07:08,803 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,804 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,805 package, please make sure that 'polyply.tests.test_data.ff' is explicitly added 2023-10-20T13:07:08,806 to the `packages` configuration field. 2023-10-20T13:07:08,807 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,807 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,808 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,809 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,810 If you don't want 'polyply.tests.test_data.ff' to be distributed and are 2023-10-20T13:07:08,811 already explicitly excluding 'polyply.tests.test_data.ff' via 2023-10-20T13:07:08,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,812 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,815 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,852 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,853 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,854 even if it does not contain any `.py` files. 2023-10-20T13:07:08,854 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,855 directory, all directories are treated like packages. 2023-10-20T13:07:08,855 ******************************************************************************** 2023-10-20T13:07:08,856 !! 2023-10-20T13:07:08,857 check.warn(importable) 2023-10-20T13:07:08,857 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.gen_params.input' is absent from the `packages` configuration. 2023-10-20T13:07:08,858 !! 2023-10-20T13:07:08,859 ******************************************************************************** 2023-10-20T13:07:08,860 ############################ 2023-10-20T13:07:08,861 # Package would be ignored # 2023-10-20T13:07:08,861 ############################ 2023-10-20T13:07:08,862 Python recognizes 'polyply.tests.test_data.gen_params.input' as an importable package[^1], 2023-10-20T13:07:08,862 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,863 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,864 package, please make sure that 'polyply.tests.test_data.gen_params.input' is explicitly added 2023-10-20T13:07:08,864 to the `packages` configuration field. 2023-10-20T13:07:08,865 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,865 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,866 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,867 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,868 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,869 If you don't want 'polyply.tests.test_data.gen_params.input' to be distributed and are 2023-10-20T13:07:08,869 already explicitly excluding 'polyply.tests.test_data.gen_params.input' via 2023-10-20T13:07:08,870 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,870 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,871 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,872 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,873 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,874 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,874 even if it does not contain any `.py` files. 2023-10-20T13:07:08,874 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,875 directory, all directories are treated like packages. 2023-10-20T13:07:08,875 ******************************************************************************** 2023-10-20T13:07:08,876 !! 2023-10-20T13:07:08,876 check.warn(importable) 2023-10-20T13:07:08,876 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.gen_params.logging' is absent from the `packages` configuration. 2023-10-20T13:07:08,877 !! 2023-10-20T13:07:08,877 ******************************************************************************** 2023-10-20T13:07:08,878 ############################ 2023-10-20T13:07:08,878 # Package would be ignored # 2023-10-20T13:07:08,878 ############################ 2023-10-20T13:07:08,879 Python recognizes 'polyply.tests.test_data.gen_params.logging' as an importable package[^1], 2023-10-20T13:07:08,879 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,880 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,881 package, please make sure that 'polyply.tests.test_data.gen_params.logging' is explicitly added 2023-10-20T13:07:08,881 to the `packages` configuration field. 2023-10-20T13:07:08,882 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,883 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,883 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,884 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,885 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,886 If you don't want 'polyply.tests.test_data.gen_params.logging' to be distributed and are 2023-10-20T13:07:08,887 already explicitly excluding 'polyply.tests.test_data.gen_params.logging' via 2023-10-20T13:07:08,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,888 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,889 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,890 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,891 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,892 even if it does not contain any `.py` files. 2023-10-20T13:07:08,892 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,893 directory, all directories are treated like packages. 2023-10-20T13:07:08,893 ******************************************************************************** 2023-10-20T13:07:08,894 !! 2023-10-20T13:07:08,895 check.warn(importable) 2023-10-20T13:07:08,896 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.gen_params.ref' is absent from the `packages` configuration. 2023-10-20T13:07:08,896 !! 2023-10-20T13:07:08,897 ******************************************************************************** 2023-10-20T13:07:08,898 ############################ 2023-10-20T13:07:08,898 # Package would be ignored # 2023-10-20T13:07:08,898 ############################ 2023-10-20T13:07:08,898 Python recognizes 'polyply.tests.test_data.gen_params.ref' as an importable package[^1], 2023-10-20T13:07:08,899 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,899 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,900 package, please make sure that 'polyply.tests.test_data.gen_params.ref' is explicitly added 2023-10-20T13:07:08,900 to the `packages` configuration field. 2023-10-20T13:07:08,901 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,901 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,901 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,902 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,903 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,903 If you don't want 'polyply.tests.test_data.gen_params.ref' to be distributed and are 2023-10-20T13:07:08,904 already explicitly excluding 'polyply.tests.test_data.gen_params.ref' via 2023-10-20T13:07:08,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,905 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,906 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,907 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,909 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,909 even if it does not contain any `.py` files. 2023-10-20T13:07:08,910 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,910 directory, all directories are treated like packages. 2023-10-20T13:07:08,911 ******************************************************************************** 2023-10-20T13:07:08,912 !! 2023-10-20T13:07:08,913 check.warn(importable) 2023-10-20T13:07:08,913 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.gen_seq.input' is absent from the `packages` configuration. 2023-10-20T13:07:08,914 !! 2023-10-20T13:07:08,914 ******************************************************************************** 2023-10-20T13:07:08,915 ############################ 2023-10-20T13:07:08,915 # Package would be ignored # 2023-10-20T13:07:08,916 ############################ 2023-10-20T13:07:08,916 Python recognizes 'polyply.tests.test_data.gen_seq.input' as an importable package[^1], 2023-10-20T13:07:08,917 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,918 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,918 package, please make sure that 'polyply.tests.test_data.gen_seq.input' is explicitly added 2023-10-20T13:07:08,919 to the `packages` configuration field. 2023-10-20T13:07:08,920 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,920 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,921 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,922 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,923 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,923 If you don't want 'polyply.tests.test_data.gen_seq.input' to be distributed and are 2023-10-20T13:07:08,924 already explicitly excluding 'polyply.tests.test_data.gen_seq.input' via 2023-10-20T13:07:08,924 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,925 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,925 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,926 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,927 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,928 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,928 even if it does not contain any `.py` files. 2023-10-20T13:07:08,928 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,929 directory, all directories are treated like packages. 2023-10-20T13:07:08,929 ******************************************************************************** 2023-10-20T13:07:08,930 !! 2023-10-20T13:07:08,930 check.warn(importable) 2023-10-20T13:07:08,931 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.gen_seq.output' is absent from the `packages` configuration. 2023-10-20T13:07:08,931 !! 2023-10-20T13:07:08,932 ******************************************************************************** 2023-10-20T13:07:08,933 ############################ 2023-10-20T13:07:08,933 # Package would be ignored # 2023-10-20T13:07:08,934 ############################ 2023-10-20T13:07:08,934 Python recognizes 'polyply.tests.test_data.gen_seq.output' as an importable package[^1], 2023-10-20T13:07:08,935 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,936 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,936 package, please make sure that 'polyply.tests.test_data.gen_seq.output' is explicitly added 2023-10-20T13:07:08,937 to the `packages` configuration field. 2023-10-20T13:07:08,938 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,939 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,939 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,941 If you don't want 'polyply.tests.test_data.gen_seq.output' to be distributed and are 2023-10-20T13:07:08,942 already explicitly excluding 'polyply.tests.test_data.gen_seq.output' via 2023-10-20T13:07:08,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,943 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,943 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,944 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,947 even if it does not contain any `.py` files. 2023-10-20T13:07:08,948 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,948 directory, all directories are treated like packages. 2023-10-20T13:07:08,948 ******************************************************************************** 2023-10-20T13:07:08,949 !! 2023-10-20T13:07:08,949 check.warn(importable) 2023-10-20T13:07:08,950 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.gen_seq.ref' is absent from the `packages` configuration. 2023-10-20T13:07:08,950 !! 2023-10-20T13:07:08,951 ******************************************************************************** 2023-10-20T13:07:08,951 ############################ 2023-10-20T13:07:08,951 # Package would be ignored # 2023-10-20T13:07:08,952 ############################ 2023-10-20T13:07:08,952 Python recognizes 'polyply.tests.test_data.gen_seq.ref' as an importable package[^1], 2023-10-20T13:07:08,952 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,953 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,953 package, please make sure that 'polyply.tests.test_data.gen_seq.ref' is explicitly added 2023-10-20T13:07:08,954 to the `packages` configuration field. 2023-10-20T13:07:08,954 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,955 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,955 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,956 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,958 If you don't want 'polyply.tests.test_data.gen_seq.ref' to be distributed and are 2023-10-20T13:07:08,959 already explicitly excluding 'polyply.tests.test_data.gen_seq.ref' via 2023-10-20T13:07:08,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,960 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,961 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,963 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,964 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,964 even if it does not contain any `.py` files. 2023-10-20T13:07:08,965 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,965 directory, all directories are treated like packages. 2023-10-20T13:07:08,966 ******************************************************************************** 2023-10-20T13:07:08,966 !! 2023-10-20T13:07:08,967 check.warn(importable) 2023-10-20T13:07:08,967 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.itp' is absent from the `packages` configuration. 2023-10-20T13:07:08,968 !! 2023-10-20T13:07:08,969 ******************************************************************************** 2023-10-20T13:07:08,969 ############################ 2023-10-20T13:07:08,970 # Package would be ignored # 2023-10-20T13:07:08,970 ############################ 2023-10-20T13:07:08,971 Python recognizes 'polyply.tests.test_data.itp' as an importable package[^1], 2023-10-20T13:07:08,971 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,972 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,973 package, please make sure that 'polyply.tests.test_data.itp' is explicitly added 2023-10-20T13:07:08,973 to the `packages` configuration field. 2023-10-20T13:07:08,974 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,975 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,975 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:08,976 If you don't want 'polyply.tests.test_data.itp' to be distributed and are 2023-10-20T13:07:08,977 already explicitly excluding 'polyply.tests.test_data.itp' via 2023-10-20T13:07:08,977 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:08,977 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:08,978 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:08,979 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:08,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:08,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:08,981 even if it does not contain any `.py` files. 2023-10-20T13:07:08,982 On the other hand, currently there is no concept of package data 2023-10-20T13:07:08,983 directory, all directories are treated like packages. 2023-10-20T13:07:08,983 ******************************************************************************** 2023-10-20T13:07:08,984 !! 2023-10-20T13:07:08,985 check.warn(importable) 2023-10-20T13:07:08,985 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.json' is absent from the `packages` configuration. 2023-10-20T13:07:08,986 !! 2023-10-20T13:07:08,987 ******************************************************************************** 2023-10-20T13:07:08,987 ############################ 2023-10-20T13:07:08,988 # Package would be ignored # 2023-10-20T13:07:08,989 ############################ 2023-10-20T13:07:08,989 Python recognizes 'polyply.tests.test_data.json' as an importable package[^1], 2023-10-20T13:07:08,989 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:08,990 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:08,991 package, please make sure that 'polyply.tests.test_data.json' is explicitly added 2023-10-20T13:07:08,991 to the `packages` configuration field. 2023-10-20T13:07:08,995 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:08,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:08,996 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:08,998 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:08,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,000 If you don't want 'polyply.tests.test_data.json' to be distributed and are 2023-10-20T13:07:09,001 already explicitly excluding 'polyply.tests.test_data.json' via 2023-10-20T13:07:09,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,003 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,004 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,004 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,006 even if it does not contain any `.py` files. 2023-10-20T13:07:09,007 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,007 directory, all directories are treated like packages. 2023-10-20T13:07:09,007 ******************************************************************************** 2023-10-20T13:07:09,008 !! 2023-10-20T13:07:09,009 check.warn(importable) 2023-10-20T13:07:09,009 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests' is absent from the `packages` configuration. 2023-10-20T13:07:09,010 !! 2023-10-20T13:07:09,010 ******************************************************************************** 2023-10-20T13:07:09,011 ############################ 2023-10-20T13:07:09,011 # Package would be ignored # 2023-10-20T13:07:09,012 ############################ 2023-10-20T13:07:09,012 Python recognizes 'polyply.tests.test_data.library_tests' as an importable package[^1], 2023-10-20T13:07:09,013 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,014 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,015 package, please make sure that 'polyply.tests.test_data.library_tests' is explicitly added 2023-10-20T13:07:09,016 to the `packages` configuration field. 2023-10-20T13:07:09,017 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,018 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,019 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,021 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,022 If you don't want 'polyply.tests.test_data.library_tests' to be distributed and are 2023-10-20T13:07:09,022 already explicitly excluding 'polyply.tests.test_data.library_tests' via 2023-10-20T13:07:09,023 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,024 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,024 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,025 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,027 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,028 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,029 even if it does not contain any `.py` files. 2023-10-20T13:07:09,029 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,030 directory, all directories are treated like packages. 2023-10-20T13:07:09,031 ******************************************************************************** 2023-10-20T13:07:09,032 !! 2023-10-20T13:07:09,032 check.warn(importable) 2023-10-20T13:07:09,033 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,034 !! 2023-10-20T13:07:09,035 ******************************************************************************** 2023-10-20T13:07:09,036 ############################ 2023-10-20T13:07:09,036 # Package would be ignored # 2023-10-20T13:07:09,037 ############################ 2023-10-20T13:07:09,037 Python recognizes 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' as an importable package[^1], 2023-10-20T13:07:09,038 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,038 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,039 package, please make sure that 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' is explicitly added 2023-10-20T13:07:09,039 to the `packages` configuration field. 2023-10-20T13:07:09,040 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,041 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,041 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,042 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,043 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,044 If you don't want 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' to be distributed and are 2023-10-20T13:07:09,045 already explicitly excluding 'polyply.tests.test_data.library_tests.gromos53A6.P3HT.polyply' via 2023-10-20T13:07:09,045 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,046 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,047 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,048 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,049 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,051 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,052 even if it does not contain any `.py` files. 2023-10-20T13:07:09,052 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,053 directory, all directories are treated like packages. 2023-10-20T13:07:09,053 ******************************************************************************** 2023-10-20T13:07:09,055 !! 2023-10-20T13:07:09,055 check.warn(importable) 2023-10-20T13:07:09,056 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,056 !! 2023-10-20T13:07:09,058 ******************************************************************************** 2023-10-20T13:07:09,058 ############################ 2023-10-20T13:07:09,059 # Package would be ignored # 2023-10-20T13:07:09,059 ############################ 2023-10-20T13:07:09,060 Python recognizes 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' as an importable package[^1], 2023-10-20T13:07:09,060 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,062 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,062 package, please make sure that 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' is explicitly added 2023-10-20T13:07:09,063 to the `packages` configuration field. 2023-10-20T13:07:09,064 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,065 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,065 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,066 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,068 If you don't want 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' to be distributed and are 2023-10-20T13:07:09,068 already explicitly excluding 'polyply.tests.test_data.library_tests.ibi_cgm3.PTMA.polyply' via 2023-10-20T13:07:09,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,069 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,070 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,073 even if it does not contain any `.py` files. 2023-10-20T13:07:09,073 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,074 directory, all directories are treated like packages. 2023-10-20T13:07:09,074 ******************************************************************************** 2023-10-20T13:07:09,075 !! 2023-10-20T13:07:09,076 check.warn(importable) 2023-10-20T13:07:09,076 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,077 !! 2023-10-20T13:07:09,078 ******************************************************************************** 2023-10-20T13:07:09,079 ############################ 2023-10-20T13:07:09,079 # Package would be ignored # 2023-10-20T13:07:09,080 ############################ 2023-10-20T13:07:09,080 Python recognizes 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' as an importable package[^1], 2023-10-20T13:07:09,081 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,082 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,082 package, please make sure that 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' is explicitly added 2023-10-20T13:07:09,083 to the `packages` configuration field. 2023-10-20T13:07:09,084 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,084 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,085 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,086 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,087 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,088 If you don't want 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' to be distributed and are 2023-10-20T13:07:09,089 already explicitly excluding 'polyply.tests.test_data.library_tests.ibi_gbcg.PTMA.polyply' via 2023-10-20T13:07:09,089 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,091 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,092 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,092 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,094 even if it does not contain any `.py` files. 2023-10-20T13:07:09,095 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,095 directory, all directories are treated like packages. 2023-10-20T13:07:09,095 ******************************************************************************** 2023-10-20T13:07:09,096 !! 2023-10-20T13:07:09,097 check.warn(importable) 2023-10-20T13:07:09,097 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEL' is absent from the `packages` configuration. 2023-10-20T13:07:09,098 !! 2023-10-20T13:07:09,099 ******************************************************************************** 2023-10-20T13:07:09,099 ############################ 2023-10-20T13:07:09,100 # Package would be ignored # 2023-10-20T13:07:09,100 ############################ 2023-10-20T13:07:09,100 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL' as an importable package[^1], 2023-10-20T13:07:09,101 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,102 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,102 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL' is explicitly added 2023-10-20T13:07:09,103 to the `packages` configuration field. 2023-10-20T13:07:09,104 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,106 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,107 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,108 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,109 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEL' to be distributed and are 2023-10-20T13:07:09,110 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEL' via 2023-10-20T13:07:09,110 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,111 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,113 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,114 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,115 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,116 even if it does not contain any `.py` files. 2023-10-20T13:07:09,116 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,117 directory, all directories are treated like packages. 2023-10-20T13:07:09,118 ******************************************************************************** 2023-10-20T13:07:09,119 !! 2023-10-20T13:07:09,120 check.warn(importable) 2023-10-20T13:07:09,120 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,121 !! 2023-10-20T13:07:09,122 ******************************************************************************** 2023-10-20T13:07:09,123 ############################ 2023-10-20T13:07:09,123 # Package would be ignored # 2023-10-20T13:07:09,124 ############################ 2023-10-20T13:07:09,124 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' as an importable package[^1], 2023-10-20T13:07:09,124 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,126 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,126 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' is explicitly added 2023-10-20T13:07:09,126 to the `packages` configuration field. 2023-10-20T13:07:09,127 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,128 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,129 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,130 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,131 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' to be distributed and are 2023-10-20T13:07:09,131 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEL.polyply' via 2023-10-20T13:07:09,132 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,133 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,133 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,134 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,138 even if it does not contain any `.py` files. 2023-10-20T13:07:09,139 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,139 directory, all directories are treated like packages. 2023-10-20T13:07:09,140 ******************************************************************************** 2023-10-20T13:07:09,142 !! 2023-10-20T13:07:09,142 check.warn(importable) 2023-10-20T13:07:09,143 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,143 !! 2023-10-20T13:07:09,144 ******************************************************************************** 2023-10-20T13:07:09,145 ############################ 2023-10-20T13:07:09,145 # Package would be ignored # 2023-10-20T13:07:09,146 ############################ 2023-10-20T13:07:09,147 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' as an importable package[^1], 2023-10-20T13:07:09,147 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,148 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,149 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' is explicitly added 2023-10-20T13:07:09,150 to the `packages` configuration field. 2023-10-20T13:07:09,151 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,152 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,153 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,155 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' to be distributed and are 2023-10-20T13:07:09,155 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEO.polyply' via 2023-10-20T13:07:09,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,156 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,157 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,158 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,161 even if it does not contain any `.py` files. 2023-10-20T13:07:09,161 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,162 directory, all directories are treated like packages. 2023-10-20T13:07:09,162 ******************************************************************************** 2023-10-20T13:07:09,164 !! 2023-10-20T13:07:09,164 check.warn(importable) 2023-10-20T13:07:09,165 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is absent from the `packages` configuration. 2023-10-20T13:07:09,165 !! 2023-10-20T13:07:09,166 ******************************************************************************** 2023-10-20T13:07:09,167 ############################ 2023-10-20T13:07:09,167 # Package would be ignored # 2023-10-20T13:07:09,168 ############################ 2023-10-20T13:07:09,169 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE' as an importable package[^1], 2023-10-20T13:07:09,169 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,171 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,172 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE' is explicitly added 2023-10-20T13:07:09,172 to the `packages` configuration field. 2023-10-20T13:07:09,173 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,174 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,174 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,175 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,177 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,178 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEO_PE' to be distributed and are 2023-10-20T13:07:09,178 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEO_PE' via 2023-10-20T13:07:09,179 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,180 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,180 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,182 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,183 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,184 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,184 even if it does not contain any `.py` files. 2023-10-20T13:07:09,185 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,185 directory, all directories are treated like packages. 2023-10-20T13:07:09,186 ******************************************************************************** 2023-10-20T13:07:09,187 !! 2023-10-20T13:07:09,187 check.warn(importable) 2023-10-20T13:07:09,188 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,188 !! 2023-10-20T13:07:09,189 ******************************************************************************** 2023-10-20T13:07:09,190 ############################ 2023-10-20T13:07:09,190 # Package would be ignored # 2023-10-20T13:07:09,191 ############################ 2023-10-20T13:07:09,191 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' as an importable package[^1], 2023-10-20T13:07:09,191 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,193 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,193 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' is explicitly added 2023-10-20T13:07:09,194 to the `packages` configuration field. 2023-10-20T13:07:09,195 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,195 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,196 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,197 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,198 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,199 If you don't want 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' to be distributed and are 2023-10-20T13:07:09,200 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PEO_PE.polyply' via 2023-10-20T13:07:09,200 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,201 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,202 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,203 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,204 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,206 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,206 even if it does not contain any `.py` files. 2023-10-20T13:07:09,207 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,207 directory, all directories are treated like packages. 2023-10-20T13:07:09,208 ******************************************************************************** 2023-10-20T13:07:09,209 !! 2023-10-20T13:07:09,210 check.warn(importable) 2023-10-20T13:07:09,211 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,211 !! 2023-10-20T13:07:09,213 ******************************************************************************** 2023-10-20T13:07:09,213 ############################ 2023-10-20T13:07:09,214 # Package would be ignored # 2023-10-20T13:07:09,214 ############################ 2023-10-20T13:07:09,215 Python recognizes 'polyply.tests.test_data.library_tests.martini2.PS.polyply' as an importable package[^1], 2023-10-20T13:07:09,215 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,216 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,217 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.PS.polyply' is explicitly added 2023-10-20T13:07:09,217 to the `packages` configuration field. 2023-10-20T13:07:09,218 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,219 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,220 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,221 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,222 If you don't want 'polyply.tests.test_data.library_tests.martini2.PS.polyply' to be distributed and are 2023-10-20T13:07:09,222 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.PS.polyply' via 2023-10-20T13:07:09,223 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,223 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,224 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,225 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,226 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,228 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,229 even if it does not contain any `.py` files. 2023-10-20T13:07:09,229 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,230 directory, all directories are treated like packages. 2023-10-20T13:07:09,231 ******************************************************************************** 2023-10-20T13:07:09,232 !! 2023-10-20T13:07:09,232 check.warn(importable) 2023-10-20T13:07:09,233 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.ssDNA' is absent from the `packages` configuration. 2023-10-20T13:07:09,233 !! 2023-10-20T13:07:09,234 ******************************************************************************** 2023-10-20T13:07:09,235 ############################ 2023-10-20T13:07:09,236 # Package would be ignored # 2023-10-20T13:07:09,236 ############################ 2023-10-20T13:07:09,237 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA' as an importable package[^1], 2023-10-20T13:07:09,237 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,239 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,240 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA' is explicitly added 2023-10-20T13:07:09,240 to the `packages` configuration field. 2023-10-20T13:07:09,241 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,242 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,243 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,244 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,246 If you don't want 'polyply.tests.test_data.library_tests.martini2.ssDNA' to be distributed and are 2023-10-20T13:07:09,246 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.ssDNA' via 2023-10-20T13:07:09,247 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,248 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,248 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,251 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,251 even if it does not contain any `.py` files. 2023-10-20T13:07:09,252 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,252 directory, all directories are treated like packages. 2023-10-20T13:07:09,253 ******************************************************************************** 2023-10-20T13:07:09,254 !! 2023-10-20T13:07:09,254 check.warn(importable) 2023-10-20T13:07:09,254 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,255 !! 2023-10-20T13:07:09,256 ******************************************************************************** 2023-10-20T13:07:09,257 ############################ 2023-10-20T13:07:09,257 # Package would be ignored # 2023-10-20T13:07:09,258 ############################ 2023-10-20T13:07:09,258 Python recognizes 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' as an importable package[^1], 2023-10-20T13:07:09,259 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,260 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,261 package, please make sure that 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' is explicitly added 2023-10-20T13:07:09,262 to the `packages` configuration field. 2023-10-20T13:07:09,263 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,263 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,264 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,265 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,267 If you don't want 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' to be distributed and are 2023-10-20T13:07:09,268 already explicitly excluding 'polyply.tests.test_data.library_tests.martini2.ssDNA.polyply' via 2023-10-20T13:07:09,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,269 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,270 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,271 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,273 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,274 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,274 even if it does not contain any `.py` files. 2023-10-20T13:07:09,275 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,275 directory, all directories are treated like packages. 2023-10-20T13:07:09,276 ******************************************************************************** 2023-10-20T13:07:09,276 !! 2023-10-20T13:07:09,277 check.warn(importable) 2023-10-20T13:07:09,277 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,278 !! 2023-10-20T13:07:09,279 ******************************************************************************** 2023-10-20T13:07:09,279 ############################ 2023-10-20T13:07:09,280 # Package would be ignored # 2023-10-20T13:07:09,280 ############################ 2023-10-20T13:07:09,280 Python recognizes 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' as an importable package[^1], 2023-10-20T13:07:09,281 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,282 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,282 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' is explicitly added 2023-10-20T13:07:09,283 to the `packages` configuration field. 2023-10-20T13:07:09,284 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,285 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,285 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,287 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,288 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,289 If you don't want 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' to be distributed and are 2023-10-20T13:07:09,290 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.CEL.polyply' via 2023-10-20T13:07:09,291 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,291 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,292 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,293 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,294 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,296 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,296 even if it does not contain any `.py` files. 2023-10-20T13:07:09,297 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,297 directory, all directories are treated like packages. 2023-10-20T13:07:09,298 ******************************************************************************** 2023-10-20T13:07:09,299 !! 2023-10-20T13:07:09,300 check.warn(importable) 2023-10-20T13:07:09,300 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,301 !! 2023-10-20T13:07:09,303 ******************************************************************************** 2023-10-20T13:07:09,303 ############################ 2023-10-20T13:07:09,304 # Package would be ignored # 2023-10-20T13:07:09,304 ############################ 2023-10-20T13:07:09,304 Python recognizes 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' as an importable package[^1], 2023-10-20T13:07:09,305 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,306 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,306 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' is explicitly added 2023-10-20T13:07:09,306 to the `packages` configuration field. 2023-10-20T13:07:09,307 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,308 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,308 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,309 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,310 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,311 If you don't want 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' to be distributed and are 2023-10-20T13:07:09,311 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.DEX.polyply' via 2023-10-20T13:07:09,312 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,312 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,313 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,314 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,317 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,318 even if it does not contain any `.py` files. 2023-10-20T13:07:09,319 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,319 directory, all directories are treated like packages. 2023-10-20T13:07:09,320 ******************************************************************************** 2023-10-20T13:07:09,322 !! 2023-10-20T13:07:09,322 check.warn(importable) 2023-10-20T13:07:09,323 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,324 !! 2023-10-20T13:07:09,325 ******************************************************************************** 2023-10-20T13:07:09,326 ############################ 2023-10-20T13:07:09,326 # Package would be ignored # 2023-10-20T13:07:09,327 ############################ 2023-10-20T13:07:09,328 Python recognizes 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' as an importable package[^1], 2023-10-20T13:07:09,328 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,329 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,330 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' is explicitly added 2023-10-20T13:07:09,331 to the `packages` configuration field. 2023-10-20T13:07:09,332 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,334 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,335 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,336 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,337 If you don't want 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' to be distributed and are 2023-10-20T13:07:09,338 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.P3HT.polyply' via 2023-10-20T13:07:09,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,339 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,340 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,342 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,343 even if it does not contain any `.py` files. 2023-10-20T13:07:09,343 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,344 directory, all directories are treated like packages. 2023-10-20T13:07:09,344 ******************************************************************************** 2023-10-20T13:07:09,346 !! 2023-10-20T13:07:09,346 check.warn(importable) 2023-10-20T13:07:09,347 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,348 !! 2023-10-20T13:07:09,349 ******************************************************************************** 2023-10-20T13:07:09,350 ############################ 2023-10-20T13:07:09,351 # Package would be ignored # 2023-10-20T13:07:09,351 ############################ 2023-10-20T13:07:09,352 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' as an importable package[^1], 2023-10-20T13:07:09,353 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,354 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,355 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' is explicitly added 2023-10-20T13:07:09,355 to the `packages` configuration field. 2023-10-20T13:07:09,357 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,358 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,359 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,361 If you don't want 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' to be distributed and are 2023-10-20T13:07:09,362 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PDMS.polyply' via 2023-10-20T13:07:09,362 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,364 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,365 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,367 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,368 even if it does not contain any `.py` files. 2023-10-20T13:07:09,369 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,369 directory, all directories are treated like packages. 2023-10-20T13:07:09,370 ******************************************************************************** 2023-10-20T13:07:09,371 !! 2023-10-20T13:07:09,372 check.warn(importable) 2023-10-20T13:07:09,372 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,373 !! 2023-10-20T13:07:09,374 ******************************************************************************** 2023-10-20T13:07:09,374 ############################ 2023-10-20T13:07:09,375 # Package would be ignored # 2023-10-20T13:07:09,375 ############################ 2023-10-20T13:07:09,376 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PE.polyply' as an importable package[^1], 2023-10-20T13:07:09,376 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,378 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,378 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PE.polyply' is explicitly added 2023-10-20T13:07:09,379 to the `packages` configuration field. 2023-10-20T13:07:09,380 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,381 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,381 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,382 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,383 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,385 If you don't want 'polyply.tests.test_data.library_tests.martini3.PE.polyply' to be distributed and are 2023-10-20T13:07:09,385 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PE.polyply' via 2023-10-20T13:07:09,386 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,386 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,387 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,388 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,390 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,391 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,392 even if it does not contain any `.py` files. 2023-10-20T13:07:09,392 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,393 directory, all directories are treated like packages. 2023-10-20T13:07:09,393 ******************************************************************************** 2023-10-20T13:07:09,394 !! 2023-10-20T13:07:09,395 check.warn(importable) 2023-10-20T13:07:09,396 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,396 !! 2023-10-20T13:07:09,397 ******************************************************************************** 2023-10-20T13:07:09,398 ############################ 2023-10-20T13:07:09,399 # Package would be ignored # 2023-10-20T13:07:09,399 ############################ 2023-10-20T13:07:09,399 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' as an importable package[^1], 2023-10-20T13:07:09,400 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,401 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,401 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' is explicitly added 2023-10-20T13:07:09,401 to the `packages` configuration field. 2023-10-20T13:07:09,402 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,403 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,403 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,404 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,406 If you don't want 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' to be distributed and are 2023-10-20T13:07:09,406 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PEO.polyply' via 2023-10-20T13:07:09,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,407 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,409 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,410 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,412 even if it does not contain any `.py` files. 2023-10-20T13:07:09,412 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,413 directory, all directories are treated like packages. 2023-10-20T13:07:09,413 ******************************************************************************** 2023-10-20T13:07:09,414 !! 2023-10-20T13:07:09,415 check.warn(importable) 2023-10-20T13:07:09,415 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,416 !! 2023-10-20T13:07:09,417 ******************************************************************************** 2023-10-20T13:07:09,417 ############################ 2023-10-20T13:07:09,418 # Package would be ignored # 2023-10-20T13:07:09,419 ############################ 2023-10-20T13:07:09,419 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' as an importable package[^1], 2023-10-20T13:07:09,420 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,421 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,422 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' is explicitly added 2023-10-20T13:07:09,422 to the `packages` configuration field. 2023-10-20T13:07:09,423 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,424 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,425 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,426 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,427 If you don't want 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' to be distributed and are 2023-10-20T13:07:09,427 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PPE.polyply' via 2023-10-20T13:07:09,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,429 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,430 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,431 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,433 even if it does not contain any `.py` files. 2023-10-20T13:07:09,433 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,434 directory, all directories are treated like packages. 2023-10-20T13:07:09,434 ******************************************************************************** 2023-10-20T13:07:09,435 !! 2023-10-20T13:07:09,435 check.warn(importable) 2023-10-20T13:07:09,436 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PROT' is absent from the `packages` configuration. 2023-10-20T13:07:09,436 !! 2023-10-20T13:07:09,437 ******************************************************************************** 2023-10-20T13:07:09,438 ############################ 2023-10-20T13:07:09,438 # Package would be ignored # 2023-10-20T13:07:09,438 ############################ 2023-10-20T13:07:09,439 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT' as an importable package[^1], 2023-10-20T13:07:09,440 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,441 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,441 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT' is explicitly added 2023-10-20T13:07:09,442 to the `packages` configuration field. 2023-10-20T13:07:09,443 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,444 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,445 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,446 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,447 If you don't want 'polyply.tests.test_data.library_tests.martini3.PROT' to be distributed and are 2023-10-20T13:07:09,447 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PROT' via 2023-10-20T13:07:09,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,448 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,449 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,450 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,451 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,453 even if it does not contain any `.py` files. 2023-10-20T13:07:09,453 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,454 directory, all directories are treated like packages. 2023-10-20T13:07:09,454 ******************************************************************************** 2023-10-20T13:07:09,455 !! 2023-10-20T13:07:09,455 check.warn(importable) 2023-10-20T13:07:09,456 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,456 !! 2023-10-20T13:07:09,457 ******************************************************************************** 2023-10-20T13:07:09,457 ############################ 2023-10-20T13:07:09,458 # Package would be ignored # 2023-10-20T13:07:09,458 ############################ 2023-10-20T13:07:09,459 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' as an importable package[^1], 2023-10-20T13:07:09,459 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,460 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,461 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' is explicitly added 2023-10-20T13:07:09,461 to the `packages` configuration field. 2023-10-20T13:07:09,462 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,463 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,464 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,465 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,466 If you don't want 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' to be distributed and are 2023-10-20T13:07:09,466 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PROT.polyply' via 2023-10-20T13:07:09,467 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,467 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,468 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,468 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,471 even if it does not contain any `.py` files. 2023-10-20T13:07:09,472 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,472 directory, all directories are treated like packages. 2023-10-20T13:07:09,473 ******************************************************************************** 2023-10-20T13:07:09,474 !! 2023-10-20T13:07:09,474 check.warn(importable) 2023-10-20T13:07:09,475 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,476 !! 2023-10-20T13:07:09,477 ******************************************************************************** 2023-10-20T13:07:09,477 ############################ 2023-10-20T13:07:09,478 # Package would be ignored # 2023-10-20T13:07:09,478 ############################ 2023-10-20T13:07:09,478 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PS.polyply' as an importable package[^1], 2023-10-20T13:07:09,479 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,480 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,480 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PS.polyply' is explicitly added 2023-10-20T13:07:09,481 to the `packages` configuration field. 2023-10-20T13:07:09,482 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,483 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,484 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,484 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,485 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,487 If you don't want 'polyply.tests.test_data.library_tests.martini3.PS.polyply' to be distributed and are 2023-10-20T13:07:09,487 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PS.polyply' via 2023-10-20T13:07:09,487 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,488 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,489 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,493 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,494 even if it does not contain any `.py` files. 2023-10-20T13:07:09,494 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,495 directory, all directories are treated like packages. 2023-10-20T13:07:09,496 ******************************************************************************** 2023-10-20T13:07:09,497 !! 2023-10-20T13:07:09,497 check.warn(importable) 2023-10-20T13:07:09,498 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,499 !! 2023-10-20T13:07:09,499 ******************************************************************************** 2023-10-20T13:07:09,500 ############################ 2023-10-20T13:07:09,501 # Package would be ignored # 2023-10-20T13:07:09,501 ############################ 2023-10-20T13:07:09,502 Python recognizes 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' as an importable package[^1], 2023-10-20T13:07:09,502 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,503 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,504 package, please make sure that 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' is explicitly added 2023-10-20T13:07:09,504 to the `packages` configuration field. 2023-10-20T13:07:09,505 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,507 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,508 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,510 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,510 If you don't want 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' to be distributed and are 2023-10-20T13:07:09,511 already explicitly excluding 'polyply.tests.test_data.library_tests.martini3.PTMA.polyply' via 2023-10-20T13:07:09,511 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,512 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,512 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,513 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,513 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,515 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,515 even if it does not contain any `.py` files. 2023-10-20T13:07:09,516 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,516 directory, all directories are treated like packages. 2023-10-20T13:07:09,516 ******************************************************************************** 2023-10-20T13:07:09,517 !! 2023-10-20T13:07:09,518 check.warn(importable) 2023-10-20T13:07:09,518 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,519 !! 2023-10-20T13:07:09,519 ******************************************************************************** 2023-10-20T13:07:09,520 ############################ 2023-10-20T13:07:09,520 # Package would be ignored # 2023-10-20T13:07:09,521 ############################ 2023-10-20T13:07:09,521 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' as an importable package[^1], 2023-10-20T13:07:09,522 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,523 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,523 package, please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' is explicitly added 2023-10-20T13:07:09,524 to the `packages` configuration field. 2023-10-20T13:07:09,525 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,525 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,526 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,527 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,528 If you don't want 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' to be distributed and are 2023-10-20T13:07:09,529 already explicitly excluding 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PEO.polyply' via 2023-10-20T13:07:09,529 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,530 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,530 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,531 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,532 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,534 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,534 even if it does not contain any `.py` files. 2023-10-20T13:07:09,535 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,535 directory, all directories are treated like packages. 2023-10-20T13:07:09,536 ******************************************************************************** 2023-10-20T13:07:09,536 !! 2023-10-20T13:07:09,537 check.warn(importable) 2023-10-20T13:07:09,537 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,538 !! 2023-10-20T13:07:09,538 ******************************************************************************** 2023-10-20T13:07:09,539 ############################ 2023-10-20T13:07:09,539 # Package would be ignored # 2023-10-20T13:07:09,540 ############################ 2023-10-20T13:07:09,540 Python recognizes 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' as an importable package[^1], 2023-10-20T13:07:09,540 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,542 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,542 package, please make sure that 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' is explicitly added 2023-10-20T13:07:09,542 to the `packages` configuration field. 2023-10-20T13:07:09,543 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,544 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,544 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,545 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,547 If you don't want 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' to be distributed and are 2023-10-20T13:07:09,548 already explicitly excluding 'polyply.tests.test_data.library_tests.oplsaaLigParGen.PTMA.polyply' via 2023-10-20T13:07:09,548 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,549 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,549 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,550 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,551 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,552 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,553 even if it does not contain any `.py` files. 2023-10-20T13:07:09,553 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,554 directory, all directories are treated like packages. 2023-10-20T13:07:09,554 ******************************************************************************** 2023-10-20T13:07:09,555 !! 2023-10-20T13:07:09,556 check.warn(importable) 2023-10-20T13:07:09,556 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is absent from the `packages` configuration. 2023-10-20T13:07:09,557 !! 2023-10-20T13:07:09,558 ******************************************************************************** 2023-10-20T13:07:09,558 ############################ 2023-10-20T13:07:09,559 # Package would be ignored # 2023-10-20T13:07:09,559 ############################ 2023-10-20T13:07:09,560 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA' as an importable package[^1], 2023-10-20T13:07:09,560 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,561 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,561 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA' is explicitly added 2023-10-20T13:07:09,562 to the `packages` configuration field. 2023-10-20T13:07:09,563 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,563 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,563 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,564 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,565 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,566 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.DNA' to be distributed and are 2023-10-20T13:07:09,566 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.DNA' via 2023-10-20T13:07:09,567 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,567 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,568 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,568 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,569 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,571 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,571 even if it does not contain any `.py` files. 2023-10-20T13:07:09,572 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,572 directory, all directories are treated like packages. 2023-10-20T13:07:09,573 ******************************************************************************** 2023-10-20T13:07:09,574 !! 2023-10-20T13:07:09,574 check.warn(importable) 2023-10-20T13:07:09,575 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,575 !! 2023-10-20T13:07:09,576 ******************************************************************************** 2023-10-20T13:07:09,577 ############################ 2023-10-20T13:07:09,577 # Package would be ignored # 2023-10-20T13:07:09,577 ############################ 2023-10-20T13:07:09,578 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' as an importable package[^1], 2023-10-20T13:07:09,578 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,579 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,580 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' is explicitly added 2023-10-20T13:07:09,580 to the `packages` configuration field. 2023-10-20T13:07:09,581 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,582 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,582 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,583 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,584 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,585 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' to be distributed and are 2023-10-20T13:07:09,586 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.DNA.polyply' via 2023-10-20T13:07:09,586 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,586 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,587 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,587 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,590 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,590 even if it does not contain any `.py` files. 2023-10-20T13:07:09,590 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,591 directory, all directories are treated like packages. 2023-10-20T13:07:09,591 ******************************************************************************** 2023-10-20T13:07:09,592 !! 2023-10-20T13:07:09,593 check.warn(importable) 2023-10-20T13:07:09,593 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' is absent from the `packages` configuration. 2023-10-20T13:07:09,594 !! 2023-10-20T13:07:09,594 ******************************************************************************** 2023-10-20T13:07:09,595 ############################ 2023-10-20T13:07:09,595 # Package would be ignored # 2023-10-20T13:07:09,596 ############################ 2023-10-20T13:07:09,596 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' as an importable package[^1], 2023-10-20T13:07:09,597 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,598 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,598 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' is explicitly added 2023-10-20T13:07:09,599 to the `packages` configuration field. 2023-10-20T13:07:09,599 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,600 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,601 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,602 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,603 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,603 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' to be distributed and are 2023-10-20T13:07:09,604 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA' via 2023-10-20T13:07:09,604 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,605 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,606 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,607 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,609 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,609 even if it does not contain any `.py` files. 2023-10-20T13:07:09,610 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,611 directory, all directories are treated like packages. 2023-10-20T13:07:09,611 ******************************************************************************** 2023-10-20T13:07:09,612 !! 2023-10-20T13:07:09,612 check.warn(importable) 2023-10-20T13:07:09,613 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,613 !! 2023-10-20T13:07:09,614 ******************************************************************************** 2023-10-20T13:07:09,614 ############################ 2023-10-20T13:07:09,615 # Package would be ignored # 2023-10-20T13:07:09,615 ############################ 2023-10-20T13:07:09,615 Python recognizes 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' as an importable package[^1], 2023-10-20T13:07:09,616 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,617 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,617 package, please make sure that 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' is explicitly added 2023-10-20T13:07:09,618 to the `packages` configuration field. 2023-10-20T13:07:09,619 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,619 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,620 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,621 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,623 If you don't want 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' to be distributed and are 2023-10-20T13:07:09,623 already explicitly excluding 'polyply.tests.test_data.library_tests.parmbsc1.dsDNA.polyply' via 2023-10-20T13:07:09,624 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,625 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,626 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,627 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,628 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,629 even if it does not contain any `.py` files. 2023-10-20T13:07:09,629 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,630 directory, all directories are treated like packages. 2023-10-20T13:07:09,630 ******************************************************************************** 2023-10-20T13:07:09,631 !! 2023-10-20T13:07:09,632 check.warn(importable) 2023-10-20T13:07:09,632 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.polyply' is absent from the `packages` configuration. 2023-10-20T13:07:09,633 !! 2023-10-20T13:07:09,634 ******************************************************************************** 2023-10-20T13:07:09,634 ############################ 2023-10-20T13:07:09,635 # Package would be ignored # 2023-10-20T13:07:09,635 ############################ 2023-10-20T13:07:09,636 Python recognizes 'polyply.tests.test_data.polyply' as an importable package[^1], 2023-10-20T13:07:09,636 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,637 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,638 package, please make sure that 'polyply.tests.test_data.polyply' is explicitly added 2023-10-20T13:07:09,638 to the `packages` configuration field. 2023-10-20T13:07:09,639 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,640 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,640 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,641 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,642 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,642 If you don't want 'polyply.tests.test_data.polyply' to be distributed and are 2023-10-20T13:07:09,643 already explicitly excluding 'polyply.tests.test_data.polyply' via 2023-10-20T13:07:09,643 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,644 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,644 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,645 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,646 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,647 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,648 even if it does not contain any `.py` files. 2023-10-20T13:07:09,648 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,649 directory, all directories are treated like packages. 2023-10-20T13:07:09,649 ******************************************************************************** 2023-10-20T13:07:09,650 !! 2023-10-20T13:07:09,651 check.warn(importable) 2023-10-20T13:07:09,653 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.simple_seq_files' is absent from the `packages` configuration. 2023-10-20T13:07:09,654 !! 2023-10-20T13:07:09,655 ******************************************************************************** 2023-10-20T13:07:09,656 ############################ 2023-10-20T13:07:09,656 # Package would be ignored # 2023-10-20T13:07:09,657 ############################ 2023-10-20T13:07:09,657 Python recognizes 'polyply.tests.test_data.simple_seq_files' as an importable package[^1], 2023-10-20T13:07:09,658 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,659 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,659 package, please make sure that 'polyply.tests.test_data.simple_seq_files' is explicitly added 2023-10-20T13:07:09,660 to the `packages` configuration field. 2023-10-20T13:07:09,661 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,662 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,663 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,664 If you don't want 'polyply.tests.test_data.simple_seq_files' to be distributed and are 2023-10-20T13:07:09,665 already explicitly excluding 'polyply.tests.test_data.simple_seq_files' via 2023-10-20T13:07:09,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,667 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,667 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,669 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,674 even if it does not contain any `.py` files. 2023-10-20T13:07:09,674 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,675 directory, all directories are treated like packages. 2023-10-20T13:07:09,675 ******************************************************************************** 2023-10-20T13:07:09,676 !! 2023-10-20T13:07:09,676 check.warn(importable) 2023-10-20T13:07:09,677 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.struc_build' is absent from the `packages` configuration. 2023-10-20T13:07:09,677 !! 2023-10-20T13:07:09,678 ******************************************************************************** 2023-10-20T13:07:09,678 ############################ 2023-10-20T13:07:09,679 # Package would be ignored # 2023-10-20T13:07:09,680 ############################ 2023-10-20T13:07:09,680 Python recognizes 'polyply.tests.test_data.struc_build' as an importable package[^1], 2023-10-20T13:07:09,681 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,682 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,682 package, please make sure that 'polyply.tests.test_data.struc_build' is explicitly added 2023-10-20T13:07:09,683 to the `packages` configuration field. 2023-10-20T13:07:09,683 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,684 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,684 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,685 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,687 If you don't want 'polyply.tests.test_data.struc_build' to be distributed and are 2023-10-20T13:07:09,688 already explicitly excluding 'polyply.tests.test_data.struc_build' via 2023-10-20T13:07:09,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,689 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,689 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,690 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,693 even if it does not contain any `.py` files. 2023-10-20T13:07:09,694 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,694 directory, all directories are treated like packages. 2023-10-20T13:07:09,695 ******************************************************************************** 2023-10-20T13:07:09,696 !! 2023-10-20T13:07:09,697 check.warn(importable) 2023-10-20T13:07:09,697 /tmp/pip-build-env-8u755pa7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'polyply.tests.test_data.topology_test' is absent from the `packages` configuration. 2023-10-20T13:07:09,698 !! 2023-10-20T13:07:09,698 ******************************************************************************** 2023-10-20T13:07:09,699 ############################ 2023-10-20T13:07:09,699 # Package would be ignored # 2023-10-20T13:07:09,700 ############################ 2023-10-20T13:07:09,700 Python recognizes 'polyply.tests.test_data.topology_test' as an importable package[^1], 2023-10-20T13:07:09,700 but it is absent from setuptools' `packages` configuration. 2023-10-20T13:07:09,702 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-20T13:07:09,702 package, please make sure that 'polyply.tests.test_data.topology_test' is explicitly added 2023-10-20T13:07:09,703 to the `packages` configuration field. 2023-10-20T13:07:09,703 Alternatively, you can also rely on setuptools' discovery methods 2023-10-20T13:07:09,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-20T13:07:09,704 instead of `find_packages(...)`/`find:`). 2023-10-20T13:07:09,705 You can read more about "package discovery" on setuptools documentation page: 2023-10-20T13:07:09,706 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-20T13:07:09,707 If you don't want 'polyply.tests.test_data.topology_test' to be distributed and are 2023-10-20T13:07:09,708 already explicitly excluding 'polyply.tests.test_data.topology_test' via 2023-10-20T13:07:09,708 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-20T13:07:09,708 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-20T13:07:09,709 combination with a more fine grained `package-data` configuration. 2023-10-20T13:07:09,710 You can read more about "package data files" on setuptools documentation page: 2023-10-20T13:07:09,711 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-20T13:07:09,712 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-20T13:07:09,713 even if it does not contain any `.py` files. 2023-10-20T13:07:09,713 On the other hand, currently there is no concept of package data 2023-10-20T13:07:09,714 directory, all directories are treated like packages. 2023-10-20T13:07:09,715 ******************************************************************************** 2023-10-20T13:07:09,716 !! 2023-10-20T13:07:09,716 check.warn(importable) 2023-10-20T13:07:09,717 creating build/lib/polyply/tests/test_data 2023-10-20T13:07:09,718 creating build/lib/polyply/tests/test_data/ff 2023-10-20T13:07:09,719 copying polyply/tests/test_data/ff/aminoacids.ff -> build/lib/polyply/tests/test_data/ff 2023-10-20T13:07:09,719 copying polyply/tests/test_data/ff/unknown_file.txt -> build/lib/polyply/tests/test_data/ff 2023-10-20T13:07:09,720 creating build/lib/polyply/tests/test_data/gen_params 2023-10-20T13:07:09,720 creating build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,721 copying polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,722 copying polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,722 copying polyply/tests/test_data/gen_params/input/PPI.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,723 copying polyply/tests/test_data/gen_params/input/PPI.json -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,723 copying polyply/tests/test_data/gen_params/input/PS.json -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,725 copying polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,726 copying polyply/tests/test_data/gen_params/input/removal.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,812 copying polyply/tests/test_data/gen_params/input/test.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,812 copying polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,813 copying polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/lib/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:09,813 creating build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,813 copying polyply/tests/test_data/gen_params/logging/ERROR_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,814 copying polyply/tests/test_data/gen_params/logging/ERROR_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,814 copying polyply/tests/test_data/gen_params/logging/INFO_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,815 copying polyply/tests/test_data/gen_params/logging/INFO_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,815 copying polyply/tests/test_data/gen_params/logging/WARNING_block.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,816 copying polyply/tests/test_data/gen_params/logging/WARNING_link.ff -> build/lib/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:09,816 creating build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,817 copying polyply/tests/test_data/gen_params/ref/G3.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,817 copying polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,818 copying polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,818 copying polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,819 copying polyply/tests/test_data/gen_params/ref/end.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,819 copying polyply/tests/test_data/gen_params/ref/removal.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,819 copying polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,820 copying polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/lib/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:09,820 creating build/lib/polyply/tests/test_data/gen_seq 2023-10-20T13:07:09,821 creating build/lib/polyply/tests/test_data/gen_seq/input 2023-10-20T13:07:09,822 copying polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/lib/polyply/tests/test_data/gen_seq/input 2023-10-20T13:07:09,822 creating build/lib/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:09,822 copying polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:09,823 copying polyply/tests/test_data/gen_seq/output/PPI.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:09,823 copying polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:09,824 copying polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:09,825 copying polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/lib/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:09,825 creating build/lib/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:09,826 copying polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:09,826 copying polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:09,827 copying polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/lib/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:09,827 creating build/lib/polyply/tests/test_data/itp 2023-10-20T13:07:09,827 copying polyply/tests/test_data/itp/PEO.itp -> build/lib/polyply/tests/test_data/itp 2023-10-20T13:07:09,828 creating build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,828 copying polyply/tests/test_data/json/double_branch.json -> build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,829 copying polyply/tests/test_data/json/fail.json -> build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,829 copying polyply/tests/test_data/json/hyperbranched.json -> build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,829 copying polyply/tests/test_data/json/linear.json -> build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,830 copying polyply/tests/test_data/json/linear_rev.json -> build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,830 copying polyply/tests/test_data/json/single_branch.json -> build/lib/polyply/tests/test_data/json 2023-10-20T13:07:09,831 creating build/lib/polyply/tests/test_data/library_tests 2023-10-20T13:07:09,831 creating build/lib/polyply/tests/test_data/library_tests/2016H66 2023-10-20T13:07:09,832 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4 2023-10-20T13:07:09,832 creating build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-10-20T13:07:09,833 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-10-20T13:07:09,833 copying polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-10-20T13:07:09,834 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2023-10-20T13:07:09,834 copying polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE 2023-10-20T13:07:09,835 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-10-20T13:07:09,835 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-10-20T13:07:09,836 copying polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-10-20T13:07:09,836 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2023-10-20T13:07:09,837 copying polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA 2023-10-20T13:07:09,837 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-10-20T13:07:09,838 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-10-20T13:07:09,838 copying polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-10-20T13:07:09,839 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2023-10-20T13:07:09,839 copying polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP 2023-10-20T13:07:09,840 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-10-20T13:07:09,840 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-10-20T13:07:09,841 copying polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-10-20T13:07:09,841 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2023-10-20T13:07:09,842 copying polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS 2023-10-20T13:07:09,842 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-10-20T13:07:09,843 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-10-20T13:07:09,843 copying polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-10-20T13:07:09,844 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2023-10-20T13:07:09,844 copying polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA 2023-10-20T13:07:09,844 creating build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-10-20T13:07:09,845 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-10-20T13:07:09,845 copying polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-10-20T13:07:09,846 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6 2023-10-20T13:07:09,846 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2023-10-20T13:07:09,847 creating build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-10-20T13:07:09,847 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-10-20T13:07:09,847 copying polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-10-20T13:07:09,848 creating build/lib/polyply/tests/test_data/library_tests/ibi_cgm3 2023-10-20T13:07:09,848 creating build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA 2023-10-20T13:07:09,849 creating build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2023-10-20T13:07:09,849 copying polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2023-10-20T13:07:09,850 copying polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2023-10-20T13:07:09,850 creating build/lib/polyply/tests/test_data/library_tests/ibi_gbcg 2023-10-20T13:07:09,851 creating build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA 2023-10-20T13:07:09,851 creating build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2023-10-20T13:07:09,852 copying polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2023-10-20T13:07:09,852 copying polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2023-10-20T13:07:09,853 creating build/lib/polyply/tests/test_data/library_tests/martini2 2023-10-20T13:07:09,853 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2023-10-20T13:07:09,854 copying polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL 2023-10-20T13:07:09,854 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-10-20T13:07:09,855 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-10-20T13:07:09,855 copying polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-10-20T13:07:09,856 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO 2023-10-20T13:07:09,856 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-10-20T13:07:09,857 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-10-20T13:07:09,857 copying polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-10-20T13:07:09,858 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-10-20T13:07:09,858 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-10-20T13:07:09,859 creating build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-10-20T13:07:09,859 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-10-20T13:07:09,860 copying polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-10-20T13:07:09,860 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS 2023-10-20T13:07:09,861 creating build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-10-20T13:07:09,862 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-10-20T13:07:09,863 copying polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-10-20T13:07:09,863 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-10-20T13:07:09,864 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-10-20T13:07:09,864 copying polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-10-20T13:07:09,865 creating build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-10-20T13:07:09,866 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-10-20T13:07:09,867 copying polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-10-20T13:07:09,867 creating build/lib/polyply/tests/test_data/library_tests/martini3 2023-10-20T13:07:09,869 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL 2023-10-20T13:07:09,870 creating build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-10-20T13:07:09,871 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-10-20T13:07:09,871 copying polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-10-20T13:07:09,872 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX 2023-10-20T13:07:09,872 creating build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-10-20T13:07:09,873 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-10-20T13:07:09,873 copying polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-10-20T13:07:09,874 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT 2023-10-20T13:07:09,874 creating build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-10-20T13:07:09,875 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-10-20T13:07:09,876 copying polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-10-20T13:07:09,876 creating build/lib/polyply/tests/test_data/library_tests/martini3/PDMS 2023-10-20T13:07:09,876 creating build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-10-20T13:07:09,877 copying polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-10-20T13:07:09,878 copying polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-10-20T13:07:09,879 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE 2023-10-20T13:07:09,880 creating build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-10-20T13:07:09,881 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-10-20T13:07:09,881 copying polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-10-20T13:07:09,882 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO 2023-10-20T13:07:09,882 creating build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-10-20T13:07:09,882 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-10-20T13:07:09,883 copying polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-10-20T13:07:09,883 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE 2023-10-20T13:07:09,884 creating build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-10-20T13:07:09,884 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-10-20T13:07:09,885 copying polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-10-20T13:07:09,885 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2023-10-20T13:07:09,886 copying polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2023-10-20T13:07:09,886 copying polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT 2023-10-20T13:07:09,887 creating build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-10-20T13:07:09,887 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-10-20T13:07:09,888 copying polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-10-20T13:07:09,888 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS 2023-10-20T13:07:09,889 creating build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-10-20T13:07:09,890 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-10-20T13:07:09,890 copying polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-10-20T13:07:09,891 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA 2023-10-20T13:07:09,893 creating build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-10-20T13:07:09,894 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-10-20T13:07:09,894 copying polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-10-20T13:07:09,895 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen 2023-10-20T13:07:09,895 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2023-10-20T13:07:09,896 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-10-20T13:07:09,896 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-10-20T13:07:09,896 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-10-20T13:07:09,897 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA 2023-10-20T13:07:09,897 creating build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2023-10-20T13:07:09,898 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/PTMA.itp -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2023-10-20T13:07:09,898 copying polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2023-10-20T13:07:09,899 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1 2023-10-20T13:07:09,899 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-10-20T13:07:09,900 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-10-20T13:07:09,900 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-10-20T13:07:09,901 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-10-20T13:07:09,901 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-10-20T13:07:09,902 copying polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-10-20T13:07:09,902 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2023-10-20T13:07:09,903 copying polyply/tests/test_data/library_tests/parmbsc1/dsDNA/ref.json -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2023-10-20T13:07:09,903 creating build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2023-10-20T13:07:09,904 copying polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/DNA.itp -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2023-10-20T13:07:09,904 copying polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/command -> build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2023-10-20T13:07:09,905 creating build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,905 copying polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,905 copying polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,906 copying polyply/tests/test_data/polyply/PE.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,907 copying polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,908 copying polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,910 copying polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,912 copying polyply/tests/test_data/polyply/PP.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,914 copying polyply/tests/test_data/polyply/PS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,916 copying polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/lib/polyply/tests/test_data/polyply 2023-10-20T13:07:09,918 creating build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,919 copying polyply/tests/test_data/simple_seq_files/test.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,921 copying polyply/tests/test_data/simple_seq_files/test.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,922 copying polyply/tests/test_data/simple_seq_files/test.txt -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,924 copying polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,926 copying polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,928 copying polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,930 copying polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,932 copying polyply/tests/test_data/simple_seq_files/test_ig_warning.ig -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,933 copying polyply/tests/test_data/simple_seq_files/test_protein.fasta -> build/lib/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:09,935 creating build/lib/polyply/tests/test_data/struc_build 2023-10-20T13:07:09,936 copying polyply/tests/test_data/struc_build/PEO.bld -> build/lib/polyply/tests/test_data/struc_build 2023-10-20T13:07:09,938 copying polyply/tests/test_data/struc_build/PEO.itp -> build/lib/polyply/tests/test_data/struc_build 2023-10-20T13:07:09,940 copying polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/lib/polyply/tests/test_data/struc_build 2023-10-20T13:07:09,944 copying polyply/tests/test_data/struc_build/system.top -> build/lib/polyply/tests/test_data/struc_build 2023-10-20T13:07:09,946 creating build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,947 copying polyply/tests/test_data/topology_test/W.itp -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,949 copying polyply/tests/test_data/topology_test/cog.gro -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,951 copying polyply/tests/test_data/topology_test/cog_missing.gro -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,953 copying polyply/tests/test_data/topology_test/complete.gro -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,955 copying polyply/tests/test_data/topology_test/fail.gro -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,958 copying polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,967 copying polyply/tests/test_data/topology_test/meta.gro -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,969 copying polyply/tests/test_data/topology_test/molecule_0.itp -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,974 copying polyply/tests/test_data/topology_test/pdb.top -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,976 copying polyply/tests/test_data/topology_test/system.top -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,979 copying polyply/tests/test_data/topology_test/test.bld -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,981 copying polyply/tests/test_data/topology_test/test.gro -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,983 copying polyply/tests/test_data/topology_test/test.itp -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,986 copying polyply/tests/test_data/topology_test/test.pdb -> build/lib/polyply/tests/test_data/topology_test 2023-10-20T13:07:09,990 creating build/lib/polyply/data/2016H66 2023-10-20T13:07:09,991 copying polyply/data/2016H66/chiral_links.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:09,994 copying polyply/data/2016H66/citation.bib -> build/lib/polyply/data/2016H66 2023-10-20T13:07:09,996 copying polyply/data/2016H66/polyether_blocks.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:09,998 copying polyply/data/2016H66/polyether_links.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:10,001 copying polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:10,003 copying polyply/data/2016H66/polyvinyl_blocks.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:10,006 copying polyply/data/2016H66/polyvinyl_links.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:10,009 copying polyply/data/2016H66/terminal_blocks.ff -> build/lib/polyply/data/2016H66 2023-10-20T13:07:10,011 creating build/lib/polyply/data/gromos53A6 2023-10-20T13:07:10,013 copying polyply/data/gromos53A6/Hter.ff -> build/lib/polyply/data/gromos53A6 2023-10-20T13:07:10,015 copying polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/lib/polyply/data/gromos53A6 2023-10-20T13:07:10,018 copying polyply/data/gromos53A6/citations.bib -> build/lib/polyply/data/gromos53A6 2023-10-20T13:07:10,020 copying polyply/data/gromos53A6/links.ff -> build/lib/polyply/data/gromos53A6 2023-10-20T13:07:10,023 creating build/lib/polyply/data/ibi_cgm3 2023-10-20T13:07:10,024 copying polyply/data/ibi_cgm3/PTMA.cgm3.ibi.ff -> build/lib/polyply/data/ibi_cgm3 2023-10-20T13:07:10,027 copying polyply/data/ibi_cgm3/citations.bib -> build/lib/polyply/data/ibi_cgm3 2023-10-20T13:07:10,029 creating build/lib/polyply/data/ibi_gbcg 2023-10-20T13:07:10,030 copying polyply/data/ibi_gbcg/PTMA.gbno2.ibi.ff -> build/lib/polyply/data/ibi_gbcg 2023-10-20T13:07:10,033 copying polyply/data/ibi_gbcg/citations.bib -> build/lib/polyply/data/ibi_gbcg 2023-10-20T13:07:10,035 creating build/lib/polyply/data/martini2 2023-10-20T13:07:10,037 copying polyply/data/martini2/DNA_M2.ff -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,040 copying polyply/data/martini2/P3HT.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,042 copying polyply/data/martini2/PDADMA.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,045 copying polyply/data/martini2/PE.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,047 copying polyply/data/martini2/PEO.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,049 copying polyply/data/martini2/PP.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,052 copying polyply/data/martini2/PS.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,054 copying polyply/data/martini2/PSS.martini.2.itp -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,057 copying polyply/data/martini2/citations.bib -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,059 copying polyply/data/martini2/links.ff -> build/lib/polyply/data/martini2 2023-10-20T13:07:10,062 creating build/lib/polyply/data/martini3 2023-10-20T13:07:10,063 copying polyply/data/martini3/P3HT.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,066 copying polyply/data/martini3/PDMS.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,068 copying polyply/data/martini3/PE.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,071 copying polyply/data/martini3/PEL_link.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,073 copying polyply/data/martini3/PEO.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,076 copying polyply/data/martini3/PMA.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,078 copying polyply/data/martini3/PMMA.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,080 copying polyply/data/martini3/PPE.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,083 copying polyply/data/martini3/PS.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,085 copying polyply/data/martini3/PSS.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,088 copying polyply/data/martini3/PS_PEO_link.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,090 copying polyply/data/martini3/PTMA.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,093 copying polyply/data/martini3/PVA.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,095 copying polyply/data/martini3/aminoacids.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,099 copying polyply/data/martini3/cellulose.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,102 copying polyply/data/martini3/citations.bib -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,105 copying polyply/data/martini3/dextran.martini3.ff -> build/lib/polyply/data/martini3 2023-10-20T13:07:10,108 creating build/lib/polyply/data/martini3_beta 2023-10-20T13:07:10,110 copying polyply/data/martini3_beta/PEO.martini.3.itp -> build/lib/polyply/data/martini3_beta 2023-10-20T13:07:10,113 copying polyply/data/martini3_beta/citations.bib -> build/lib/polyply/data/martini3_beta 2023-10-20T13:07:10,116 creating build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,118 copying polyply/data/oplsaaLigParGen/CH3.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,121 copying polyply/data/oplsaaLigParGen/OHter.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,124 copying polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,126 copying polyply/data/oplsaaLigParGen/PTMA.oplsaa.LigParGen.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,130 copying polyply/data/oplsaaLigParGen/citations.bib -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,133 copying polyply/data/oplsaaLigParGen/links.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,136 copying polyply/data/oplsaaLigParGen/links_PTMA.ff -> build/lib/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,140 creating build/lib/polyply/data/parmbsc1 2023-10-20T13:07:10,141 copying polyply/data/parmbsc1/citations.bib -> build/lib/polyply/data/parmbsc1 2023-10-20T13:07:10,144 copying polyply/data/parmbsc1/dna_final.ff -> build/lib/polyply/data/parmbsc1 2023-10-20T13:07:10,232 running build_scripts 2023-10-20T13:07:10,232 creating build/scripts-3.11 2023-10-20T13:07:10,233 copying and adjusting bin/polyply -> build/scripts-3.11 2023-10-20T13:07:10,236 changing mode of build/scripts-3.11/polyply from 644 to 755 2023-10-20T13:07:10,236 installing to build/bdist.linux-armv7l/wheel 2023-10-20T13:07:10,237 running install 2023-10-20T13:07:10,273 [pbr] Generating AUTHORS 2023-10-20T13:07:10,279 [pbr] AUTHORS complete (0.0s) 2023-10-20T13:07:10,280 running install_lib 2023-10-20T13:07:10,287 creating build/bdist.linux-armv7l 2023-10-20T13:07:10,287 creating build/bdist.linux-armv7l/wheel 2023-10-20T13:07:10,289 creating build/bdist.linux-armv7l/wheel/polyply 2023-10-20T13:07:10,291 creating build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,292 copying build/lib/polyply/tests/test_meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,295 copying build/lib/polyply/tests/test_lib_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,297 copying build/lib/polyply/tests/test_gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,299 copying build/lib/polyply/tests/test_top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,301 copying build/lib/polyply/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,304 copying build/lib/polyply/tests/test_build_system.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,306 copying build/lib/polyply/tests/test_generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,308 copying build/lib/polyply/tests/test_build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,310 copying build/lib/polyply/tests/test_load_library.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,312 copying build/lib/polyply/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,314 copying build/lib/polyply/tests/test_gen_dna.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,316 copying build/lib/polyply/tests/test_gen_coords_logic.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,318 copying build/lib/polyply/tests/test_map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,321 copying build/lib/polyply/tests/test_gen_params.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,323 copying build/lib/polyply/tests/test_linalg.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,325 copying build/lib/polyply/tests/test_nb_engine.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,328 copying build/lib/polyply/tests/test_backmap.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,330 copying build/lib/polyply/tests/test_simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,332 copying build/lib/polyply/tests/test_random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,334 copying build/lib/polyply/tests/test_residue_check.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,336 copying build/lib/polyply/tests/test_polyply_input.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,339 copying build/lib/polyply/tests/test_ff_parser.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,341 copying build/lib/polyply/tests/test_optimize_geometry.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,343 copying build/lib/polyply/tests/test_gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,345 copying build/lib/polyply/tests/test_annotate_lingads.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,348 copying build/lib/polyply/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,350 copying build/lib/polyply/tests/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,352 copying build/lib/polyply/tests/example_fixtures.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,354 copying build/lib/polyply/tests/test_restraints.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,356 copying build/lib/polyply/tests/test_vs_builder.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,358 copying build/lib/polyply/tests/test_persistence.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,360 copying build/lib/polyply/tests/test_topology.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,363 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data 2023-10-20T13:07:10,365 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq 2023-10-20T13:07:10,367 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2023-10-20T13:07:10,368 copying build/lib/polyply/tests/test_data/gen_seq/input/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/input 2023-10-20T13:07:10,372 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:10,374 copying build/lib/polyply/tests/test_data/gen_seq/output/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:10,376 copying build/lib/polyply/tests/test_data/gen_seq/output/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:10,379 copying build/lib/polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:10,381 copying build/lib/polyply/tests/test_data/gen_seq/output/PEO_PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:10,383 copying build/lib/polyply/tests/test_data/gen_seq/output/lysoPEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/output 2023-10-20T13:07:10,387 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:10,388 copying build/lib/polyply/tests/test_data/gen_seq/ref/lyso_PEG.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:10,391 copying build/lib/polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:10,393 copying build/lib/polyply/tests/test_data/gen_seq/ref/PPI_ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_seq/ref 2023-10-20T13:07:10,395 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2023-10-20T13:07:10,396 copying build/lib/polyply/tests/test_data/itp/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/itp 2023-10-20T13:07:10,398 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2023-10-20T13:07:10,399 copying build/lib/polyply/tests/test_data/ff/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2023-10-20T13:07:10,402 copying build/lib/polyply/tests/test_data/ff/unknown_file.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/ff 2023-10-20T13:07:10,404 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,405 copying build/lib/polyply/tests/test_data/simple_seq_files/test_fail.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,406 copying build/lib/polyply/tests/test_data/simple_seq_files/test_ig_warning.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,408 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,410 copying build/lib/polyply/tests/test_data/simple_seq_files/test_circle.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,412 copying build/lib/polyply/tests/test_data/simple_seq_files/test.txt -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,414 copying build/lib/polyply/tests/test_data/simple_seq_files/test_protein.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,416 copying build/lib/polyply/tests/test_data/simple_seq_files/test.ig -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,418 copying build/lib/polyply/tests/test_data/simple_seq_files/test_RNA.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,421 copying build/lib/polyply/tests/test_data/simple_seq_files/test.fasta -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/simple_seq_files 2023-10-20T13:07:10,423 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-10-20T13:07:10,424 copying build/lib/polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-10-20T13:07:10,428 copying build/lib/polyply/tests/test_data/struc_build/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-10-20T13:07:10,430 copying build/lib/polyply/tests/test_data/struc_build/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-10-20T13:07:10,432 copying build/lib/polyply/tests/test_data/struc_build/PEO.bld -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/struc_build 2023-10-20T13:07:10,435 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,436 copying build/lib/polyply/tests/test_data/topology_test/cog.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,438 copying build/lib/polyply/tests/test_data/topology_test/cog_missing.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,440 copying build/lib/polyply/tests/test_data/topology_test/complete.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,442 copying build/lib/polyply/tests/test_data/topology_test/molecule_0.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,447 copying build/lib/polyply/tests/test_data/topology_test/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,456 copying build/lib/polyply/tests/test_data/topology_test/test.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,459 copying build/lib/polyply/tests/test_data/topology_test/test.bld -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,461 copying build/lib/polyply/tests/test_data/topology_test/meta.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,463 copying build/lib/polyply/tests/test_data/topology_test/fail.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,465 copying build/lib/polyply/tests/test_data/topology_test/test.gro -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,466 copying build/lib/polyply/tests/test_data/topology_test/W.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,469 copying build/lib/polyply/tests/test_data/topology_test/pdb.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,471 copying build/lib/polyply/tests/test_data/topology_test/test.pdb -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,475 copying build/lib/polyply/tests/test_data/topology_test/system.top -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/topology_test 2023-10-20T13:07:10,477 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests 2023-10-20T13:07:10,479 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg 2023-10-20T13:07:10,480 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA 2023-10-20T13:07:10,482 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2023-10-20T13:07:10,484 copying build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2023-10-20T13:07:10,486 copying build/lib/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply 2023-10-20T13:07:10,489 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen 2023-10-20T13:07:10,490 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO 2023-10-20T13:07:10,492 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-10-20T13:07:10,494 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-10-20T13:07:10,496 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply 2023-10-20T13:07:10,499 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA 2023-10-20T13:07:10,501 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2023-10-20T13:07:10,502 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2023-10-20T13:07:10,504 copying build/lib/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply 2023-10-20T13:07:10,509 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3 2023-10-20T13:07:10,511 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL 2023-10-20T13:07:10,513 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-10-20T13:07:10,514 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-10-20T13:07:10,516 copying build/lib/polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/CEL/polyply 2023-10-20T13:07:10,520 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2023-10-20T13:07:10,521 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/init.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2023-10-20T13:07:10,524 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT 2023-10-20T13:07:10,528 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-10-20T13:07:10,529 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-10-20T13:07:10,532 copying build/lib/polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PROT/polyply 2023-10-20T13:07:10,535 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO 2023-10-20T13:07:10,537 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-10-20T13:07:10,538 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-10-20T13:07:10,541 copying build/lib/polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PEO/polyply 2023-10-20T13:07:10,543 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX 2023-10-20T13:07:10,545 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-10-20T13:07:10,547 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-10-20T13:07:10,549 copying build/lib/polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/DEX/polyply 2023-10-20T13:07:10,553 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE 2023-10-20T13:07:10,554 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-10-20T13:07:10,555 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-10-20T13:07:10,558 copying build/lib/polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PPE/polyply 2023-10-20T13:07:10,561 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT 2023-10-20T13:07:10,563 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-10-20T13:07:10,564 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-10-20T13:07:10,566 copying build/lib/polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/P3HT/polyply 2023-10-20T13:07:10,569 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS 2023-10-20T13:07:10,570 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-10-20T13:07:10,572 copying build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-10-20T13:07:10,574 copying build/lib/polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PDMS/polyply 2023-10-20T13:07:10,577 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE 2023-10-20T13:07:10,579 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-10-20T13:07:10,580 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-10-20T13:07:10,583 copying build/lib/polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PE/polyply 2023-10-20T13:07:10,585 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS 2023-10-20T13:07:10,587 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-10-20T13:07:10,589 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-10-20T13:07:10,591 copying build/lib/polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PS/polyply 2023-10-20T13:07:10,594 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA 2023-10-20T13:07:10,596 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-10-20T13:07:10,597 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-10-20T13:07:10,599 copying build/lib/polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini3/PTMA/polyply 2023-10-20T13:07:10,602 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2 2023-10-20T13:07:10,604 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2023-10-20T13:07:10,606 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-10-20T13:07:10,607 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-10-20T13:07:10,610 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL/polyply 2023-10-20T13:07:10,612 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEL 2023-10-20T13:07:10,615 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-10-20T13:07:10,616 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-10-20T13:07:10,623 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-10-20T13:07:10,624 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-10-20T13:07:10,627 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA/polyply 2023-10-20T13:07:10,637 copying build/lib/polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/ssDNA 2023-10-20T13:07:10,641 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO 2023-10-20T13:07:10,642 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-10-20T13:07:10,644 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-10-20T13:07:10,646 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO/polyply 2023-10-20T13:07:10,649 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS 2023-10-20T13:07:10,651 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-10-20T13:07:10,652 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-10-20T13:07:10,655 copying build/lib/polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PS/polyply 2023-10-20T13:07:10,657 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-10-20T13:07:10,659 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-10-20T13:07:10,660 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-10-20T13:07:10,663 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply 2023-10-20T13:07:10,665 copying build/lib/polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/martini2/PEO_PE 2023-10-20T13:07:10,668 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3 2023-10-20T13:07:10,669 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA 2023-10-20T13:07:10,672 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2023-10-20T13:07:10,673 copying build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2023-10-20T13:07:10,675 copying build/lib/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/PTMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply 2023-10-20T13:07:10,678 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1 2023-10-20T13:07:10,680 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-10-20T13:07:10,681 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-10-20T13:07:10,684 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA 2023-10-20T13:07:10,689 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-10-20T13:07:10,690 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-10-20T13:07:10,693 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply 2023-10-20T13:07:10,700 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2023-10-20T13:07:10,702 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/ref.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA 2023-10-20T13:07:10,704 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2023-10-20T13:07:10,706 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2023-10-20T13:07:10,708 copying build/lib/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/DNA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply 2023-10-20T13:07:10,715 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6 2023-10-20T13:07:10,717 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT 2023-10-20T13:07:10,719 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-10-20T13:07:10,720 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-10-20T13:07:10,723 copying build/lib/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply 2023-10-20T13:07:10,726 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66 2023-10-20T13:07:10,728 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4 2023-10-20T13:07:10,730 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-10-20T13:07:10,732 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-10-20T13:07:10,734 copying build/lib/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/C12E4/polyply 2023-10-20T13:07:10,737 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2023-10-20T13:07:10,738 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/PP.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP 2023-10-20T13:07:10,741 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-10-20T13:07:10,742 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-10-20T13:07:10,744 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PP/polyply 2023-10-20T13:07:10,747 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2023-10-20T13:07:10,748 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-10-20T13:07:10,749 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-10-20T13:07:10,751 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE/polyply 2023-10-20T13:07:10,753 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PE/PE.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PE 2023-10-20T13:07:10,755 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2023-10-20T13:07:10,756 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-10-20T13:07:10,758 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-10-20T13:07:10,760 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA/polyply 2023-10-20T13:07:10,762 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PMA 2023-10-20T13:07:10,764 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2023-10-20T13:07:10,765 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-10-20T13:07:10,766 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-10-20T13:07:10,768 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS/polyply 2023-10-20T13:07:10,771 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PS/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PS 2023-10-20T13:07:10,773 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2023-10-20T13:07:10,774 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-10-20T13:07:10,776 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-10-20T13:07:10,778 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA/polyply 2023-10-20T13:07:10,780 copying build/lib/polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/library_tests/2016H66/PVA 2023-10-20T13:07:10,783 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params 2023-10-20T13:07:10,784 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,785 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,788 copying build/lib/polyply/tests/test_data/gen_params/input/test_edge_attr.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,789 copying build/lib/polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,792 copying build/lib/polyply/tests/test_data/gen_params/input/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,793 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,795 copying build/lib/polyply/tests/test_data/gen_params/input/PPI.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,797 copying build/lib/polyply/tests/test_data/gen_params/input/test.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,799 copying build/lib/polyply/tests/test_data/gen_params/input/PS.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,801 copying build/lib/polyply/tests/test_data/gen_params/input/removal.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,802 copying build/lib/polyply/tests/test_data/gen_params/input/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/input 2023-10-20T13:07:10,805 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,806 copying build/lib/polyply/tests/test_data/gen_params/logging/INFO_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,808 copying build/lib/polyply/tests/test_data/gen_params/logging/ERROR_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,810 copying build/lib/polyply/tests/test_data/gen_params/logging/WARNING_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,812 copying build/lib/polyply/tests/test_data/gen_params/logging/ERROR_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,814 copying build/lib/polyply/tests/test_data/gen_params/logging/INFO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,815 copying build/lib/polyply/tests/test_data/gen_params/logging/WARNING_block.ff -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/logging 2023-10-20T13:07:10,818 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,819 copying build/lib/polyply/tests/test_data/gen_params/ref/end.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,821 copying build/lib/polyply/tests/test_data/gen_params/ref/P3HT_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,823 copying build/lib/polyply/tests/test_data/gen_params/ref/G3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,825 copying build/lib/polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,827 copying build/lib/polyply/tests/test_data/gen_params/ref/removal.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,829 copying build/lib/polyply/tests/test_data/gen_params/ref/test_rev.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,831 copying build/lib/polyply/tests/test_data/gen_params/ref/PS_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,833 copying build/lib/polyply/tests/test_data/gen_params/ref/PEO_10.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/gen_params/ref 2023-10-20T13:07:10,836 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,837 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,839 copying build/lib/polyply/tests/test_data/polyply/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,841 copying build/lib/polyply/tests/test_data/polyply/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,845 copying build/lib/polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,847 copying build/lib/polyply/tests/test_data/polyply/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,848 copying build/lib/polyply/tests/test_data/polyply/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,850 copying build/lib/polyply/tests/test_data/polyply/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,852 copying build/lib/polyply/tests/test_data/polyply/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,854 copying build/lib/polyply/tests/test_data/polyply/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/polyply 2023-10-20T13:07:10,856 creating build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,857 copying build/lib/polyply/tests/test_data/json/double_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,859 copying build/lib/polyply/tests/test_data/json/linear_rev.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,861 copying build/lib/polyply/tests/test_data/json/fail.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,862 copying build/lib/polyply/tests/test_data/json/hyperbranched.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,864 copying build/lib/polyply/tests/test_data/json/single_branch.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,866 copying build/lib/polyply/tests/test_data/json/linear.json -> build/bdist.linux-armv7l/wheel/polyply/tests/test_data/json 2023-10-20T13:07:10,868 copying build/lib/polyply/tests/test_apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/tests 2023-10-20T13:07:10,871 creating build/bdist.linux-armv7l/wheel/polyply/data 2023-10-20T13:07:10,873 creating build/bdist.linux-armv7l/wheel/polyply/data/ibi_gbcg 2023-10-20T13:07:10,874 copying build/lib/polyply/data/ibi_gbcg/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_gbcg 2023-10-20T13:07:10,876 copying build/lib/polyply/data/ibi_gbcg/PTMA.gbno2.ibi.ff -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_gbcg 2023-10-20T13:07:10,879 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2023-10-20T13:07:10,880 copying build/lib/polyply/data/martini3_beta/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2023-10-20T13:07:10,882 copying build/lib/polyply/data/martini3_beta/PEO.martini.3.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini3_beta 2023-10-20T13:07:10,884 creating build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,885 copying build/lib/polyply/data/oplsaaLigParGen/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,887 copying build/lib/polyply/data/oplsaaLigParGen/PTMA.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,890 copying build/lib/polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,892 copying build/lib/polyply/data/oplsaaLigParGen/OHter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,894 copying build/lib/polyply/data/oplsaaLigParGen/CH3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,896 copying build/lib/polyply/data/oplsaaLigParGen/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,898 copying build/lib/polyply/data/oplsaaLigParGen/links_PTMA.ff -> build/bdist.linux-armv7l/wheel/polyply/data/oplsaaLigParGen 2023-10-20T13:07:10,901 creating build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,902 copying build/lib/polyply/data/martini3/PMMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,904 copying build/lib/polyply/data/martini3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,906 copying build/lib/polyply/data/martini3/PMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,909 copying build/lib/polyply/data/martini3/P3HT.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,911 copying build/lib/polyply/data/martini3/dextran.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,914 copying build/lib/polyply/data/martini3/PPE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,916 copying build/lib/polyply/data/martini3/PTMA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,919 copying build/lib/polyply/data/martini3/cellulose.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,921 copying build/lib/polyply/data/martini3/PE.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,923 copying build/lib/polyply/data/martini3/aminoacids.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,926 copying build/lib/polyply/data/martini3/PS_PEO_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,928 copying build/lib/polyply/data/martini3/PVA.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,931 copying build/lib/polyply/data/martini3/PSS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,933 copying build/lib/polyply/data/martini3/PS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,935 copying build/lib/polyply/data/martini3/PDMS.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,938 copying build/lib/polyply/data/martini3/PEO.martini3.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,940 copying build/lib/polyply/data/martini3/PEL_link.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini3 2023-10-20T13:07:10,943 creating build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,944 copying build/lib/polyply/data/martini2/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,947 copying build/lib/polyply/data/martini2/PEO.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,950 copying build/lib/polyply/data/martini2/P3HT.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,952 copying build/lib/polyply/data/martini2/PS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,955 copying build/lib/polyply/data/martini2/PSS.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,957 copying build/lib/polyply/data/martini2/DNA_M2.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,960 copying build/lib/polyply/data/martini2/PP.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,962 copying build/lib/polyply/data/martini2/PE.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,964 copying build/lib/polyply/data/martini2/PDADMA.martini.2.itp -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,967 copying build/lib/polyply/data/martini2/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/martini2 2023-10-20T13:07:10,969 copying build/lib/polyply/data/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/data 2023-10-20T13:07:10,972 creating build/bdist.linux-armv7l/wheel/polyply/data/ibi_cgm3 2023-10-20T13:07:10,973 copying build/lib/polyply/data/ibi_cgm3/PTMA.cgm3.ibi.ff -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_cgm3 2023-10-20T13:07:10,975 copying build/lib/polyply/data/ibi_cgm3/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/ibi_cgm3 2023-10-20T13:07:10,978 creating build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2023-10-20T13:07:10,979 copying build/lib/polyply/data/parmbsc1/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2023-10-20T13:07:10,982 copying build/lib/polyply/data/parmbsc1/dna_final.ff -> build/bdist.linux-armv7l/wheel/polyply/data/parmbsc1 2023-10-20T13:07:10,987 creating build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-10-20T13:07:10,988 copying build/lib/polyply/data/gromos53A6/citations.bib -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-10-20T13:07:10,991 copying build/lib/polyply/data/gromos53A6/Hter.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-10-20T13:07:10,993 copying build/lib/polyply/data/gromos53A6/links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-10-20T13:07:10,996 copying build/lib/polyply/data/gromos53A6/P3HT.gromos.53A6.ff -> build/bdist.linux-armv7l/wheel/polyply/data/gromos53A6 2023-10-20T13:07:10,999 creating build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,000 copying build/lib/polyply/data/2016H66/chiral_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,003 copying build/lib/polyply/data/2016H66/polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,005 copying build/lib/polyply/data/2016H66/citation.bib -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,007 copying build/lib/polyply/data/2016H66/terminal_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,009 copying build/lib/polyply/data/2016H66/polyether_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,011 copying build/lib/polyply/data/2016H66/polyether_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,013 copying build/lib/polyply/data/2016H66/polyvinyl_blocks.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,016 copying build/lib/polyply/data/2016H66/polyether_polyvinyl_links.ff -> build/bdist.linux-armv7l/wheel/polyply/data/2016H66 2023-10-20T13:07:11,018 copying build/lib/polyply/__init__.py -> build/bdist.linux-armv7l/wheel/polyply 2023-10-20T13:07:11,021 creating build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,022 copying build/lib/polyply/src/topology.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,025 copying build/lib/polyply/src/polyply_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,027 copying build/lib/polyply/src/persistence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,030 copying build/lib/polyply/src/ff_parser_sub.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,032 copying build/lib/polyply/src/minimizer.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,034 copying build/lib/polyply/src/nonbond_engine.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,036 copying build/lib/polyply/src/gen_dna.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,038 copying build/lib/polyply/src/logging.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,041 copying build/lib/polyply/src/meta_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,043 copying build/lib/polyply/src/simple_seq_parsers.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,046 copying build/lib/polyply/src/linalg_functions.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,048 copying build/lib/polyply/src/restraints.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,050 copying build/lib/polyply/src/top_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,053 copying build/lib/polyply/src/virtual_site_builder.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,055 copying build/lib/polyply/src/graph_utils.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,057 copying build/lib/polyply/src/gen_seq.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,060 copying build/lib/polyply/src/check_residue_equivalence.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,062 copying build/lib/polyply/src/apply_links.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,064 copying build/lib/polyply/src/gen_itp.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,067 copying build/lib/polyply/src/build_file_parser.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,070 copying build/lib/polyply/src/processor.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,072 copying build/lib/polyply/src/generate_templates.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,074 copying build/lib/polyply/src/map_to_molecule.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,077 copying build/lib/polyply/src/gen_coords.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,079 copying build/lib/polyply/src/__init__.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,081 copying build/lib/polyply/src/apply_modifications.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,083 copying build/lib/polyply/src/annotate_ligands.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,086 copying build/lib/polyply/src/backmap.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,088 copying build/lib/polyply/src/load_library.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,091 copying build/lib/polyply/src/build_system.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,093 copying build/lib/polyply/src/random_walk.py -> build/bdist.linux-armv7l/wheel/polyply/src 2023-10-20T13:07:11,096 running install_egg_info 2023-10-20T13:07:11,101 Copying polyply.egg-info to build/bdist.linux-armv7l/wheel/polyply-1.6.1-py3.11.egg-info 2023-10-20T13:07:11,117 running install_scripts 2023-10-20T13:07:11,118 creating build/bdist.linux-armv7l/wheel/polyply-1.6.1.data 2023-10-20T13:07:11,119 creating build/bdist.linux-armv7l/wheel/polyply-1.6.1.data/scripts 2023-10-20T13:07:11,120 copying build/scripts-3.11/polyply -> build/bdist.linux-armv7l/wheel/polyply-1.6.1.data/scripts 2023-10-20T13:07:11,123 changing mode of build/bdist.linux-armv7l/wheel/polyply-1.6.1.data/scripts/polyply to 755 2023-10-20T13:07:11,143 creating build/bdist.linux-armv7l/wheel/polyply-1.6.1.dist-info/WHEEL 2023-10-20T13:07:11,146 creating '/tmp/pip-wheel-red_q986/.tmp-6j4kkhqc/polyply-1.6.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-20T13:07:11,148 adding 'polyply/__init__.py' 2023-10-20T13:07:11,150 adding 'polyply/data/__init__.py' 2023-10-20T13:07:11,152 adding 'polyply/data/2016H66/chiral_links.ff' 2023-10-20T13:07:11,154 adding 'polyply/data/2016H66/citation.bib' 2023-10-20T13:07:11,155 adding 'polyply/data/2016H66/polyether_blocks.ff' 2023-10-20T13:07:11,157 adding 'polyply/data/2016H66/polyether_links.ff' 2023-10-20T13:07:11,158 adding 'polyply/data/2016H66/polyether_polyvinyl_links.ff' 2023-10-20T13:07:11,160 adding 'polyply/data/2016H66/polyvinyl_blocks.ff' 2023-10-20T13:07:11,161 adding 'polyply/data/2016H66/polyvinyl_links.ff' 2023-10-20T13:07:11,163 adding 'polyply/data/2016H66/terminal_blocks.ff' 2023-10-20T13:07:11,165 adding 'polyply/data/gromos53A6/Hter.ff' 2023-10-20T13:07:11,166 adding 'polyply/data/gromos53A6/P3HT.gromos.53A6.ff' 2023-10-20T13:07:11,168 adding 'polyply/data/gromos53A6/citations.bib' 2023-10-20T13:07:11,169 adding 'polyply/data/gromos53A6/links.ff' 2023-10-20T13:07:11,171 adding 'polyply/data/ibi_cgm3/PTMA.cgm3.ibi.ff' 2023-10-20T13:07:11,173 adding 'polyply/data/ibi_cgm3/citations.bib' 2023-10-20T13:07:11,175 adding 'polyply/data/ibi_gbcg/PTMA.gbno2.ibi.ff' 2023-10-20T13:07:11,176 adding 'polyply/data/ibi_gbcg/citations.bib' 2023-10-20T13:07:11,178 adding 'polyply/data/martini2/DNA_M2.ff' 2023-10-20T13:07:11,179 adding 'polyply/data/martini2/P3HT.martini.2.itp' 2023-10-20T13:07:11,181 adding 'polyply/data/martini2/PDADMA.martini.2.itp' 2023-10-20T13:07:11,182 adding 'polyply/data/martini2/PE.martini.2.itp' 2023-10-20T13:07:11,183 adding 'polyply/data/martini2/PEO.martini.2.itp' 2023-10-20T13:07:11,184 adding 'polyply/data/martini2/PP.martini.2.itp' 2023-10-20T13:07:11,186 adding 'polyply/data/martini2/PS.martini.2.itp' 2023-10-20T13:07:11,187 adding 'polyply/data/martini2/PSS.martini.2.itp' 2023-10-20T13:07:11,188 adding 'polyply/data/martini2/citations.bib' 2023-10-20T13:07:11,190 adding 'polyply/data/martini2/links.ff' 2023-10-20T13:07:11,192 adding 'polyply/data/martini3/P3HT.martini3.ff' 2023-10-20T13:07:11,193 adding 'polyply/data/martini3/PDMS.martini3.ff' 2023-10-20T13:07:11,195 adding 'polyply/data/martini3/PE.martini3.ff' 2023-10-20T13:07:11,196 adding 'polyply/data/martini3/PEL_link.ff' 2023-10-20T13:07:11,197 adding 'polyply/data/martini3/PEO.martini3.ff' 2023-10-20T13:07:11,198 adding 'polyply/data/martini3/PMA.martini3.ff' 2023-10-20T13:07:11,199 adding 'polyply/data/martini3/PMMA.martini3.ff' 2023-10-20T13:07:11,201 adding 'polyply/data/martini3/PPE.martini3.ff' 2023-10-20T13:07:11,202 adding 'polyply/data/martini3/PS.martini3.ff' 2023-10-20T13:07:11,204 adding 'polyply/data/martini3/PSS.martini3.ff' 2023-10-20T13:07:11,205 adding 'polyply/data/martini3/PS_PEO_link.ff' 2023-10-20T13:07:11,206 adding 'polyply/data/martini3/PTMA.martini3.ff' 2023-10-20T13:07:11,207 adding 'polyply/data/martini3/PVA.martini3.ff' 2023-10-20T13:07:11,210 adding 'polyply/data/martini3/aminoacids.ff' 2023-10-20T13:07:11,212 adding 'polyply/data/martini3/cellulose.martini3.ff' 2023-10-20T13:07:11,214 adding 'polyply/data/martini3/citations.bib' 2023-10-20T13:07:11,215 adding 'polyply/data/martini3/dextran.martini3.ff' 2023-10-20T13:07:11,218 adding 'polyply/data/martini3_beta/PEO.martini.3.itp' 2023-10-20T13:07:11,219 adding 'polyply/data/martini3_beta/citations.bib' 2023-10-20T13:07:11,221 adding 'polyply/data/oplsaaLigParGen/CH3.ff' 2023-10-20T13:07:11,223 adding 'polyply/data/oplsaaLigParGen/OHter.ff' 2023-10-20T13:07:11,224 adding 'polyply/data/oplsaaLigParGen/PEO.oplsaa.LigParGen.ff' 2023-10-20T13:07:11,227 adding 'polyply/data/oplsaaLigParGen/PTMA.oplsaa.LigParGen.ff' 2023-10-20T13:07:11,229 adding 'polyply/data/oplsaaLigParGen/citations.bib' 2023-10-20T13:07:11,230 adding 'polyply/data/oplsaaLigParGen/links.ff' 2023-10-20T13:07:11,232 adding 'polyply/data/oplsaaLigParGen/links_PTMA.ff' 2023-10-20T13:07:11,234 adding 'polyply/data/parmbsc1/citations.bib' 2023-10-20T13:07:11,241 adding 'polyply/data/parmbsc1/dna_final.ff' 2023-10-20T13:07:11,243 adding 'polyply/src/__init__.py' 2023-10-20T13:07:11,245 adding 'polyply/src/annotate_ligands.py' 2023-10-20T13:07:11,249 adding 'polyply/src/apply_links.py' 2023-10-20T13:07:11,250 adding 'polyply/src/apply_modifications.py' 2023-10-20T13:07:11,252 adding 'polyply/src/backmap.py' 2023-10-20T13:07:11,254 adding 'polyply/src/build_file_parser.py' 2023-10-20T13:07:11,256 adding 'polyply/src/build_system.py' 2023-10-20T13:07:11,258 adding 'polyply/src/check_residue_equivalence.py' 2023-10-20T13:07:11,259 adding 'polyply/src/ff_parser_sub.py' 2023-10-20T13:07:11,262 adding 'polyply/src/gen_coords.py' 2023-10-20T13:07:11,263 adding 'polyply/src/gen_dna.py' 2023-10-20T13:07:11,266 adding 'polyply/src/gen_itp.py' 2023-10-20T13:07:11,268 adding 'polyply/src/gen_seq.py' 2023-10-20T13:07:11,271 adding 'polyply/src/generate_templates.py' 2023-10-20T13:07:11,273 adding 'polyply/src/graph_utils.py' 2023-10-20T13:07:11,275 adding 'polyply/src/linalg_functions.py' 2023-10-20T13:07:11,276 adding 'polyply/src/load_library.py' 2023-10-20T13:07:11,278 adding 'polyply/src/logging.py' 2023-10-20T13:07:11,280 adding 'polyply/src/map_to_molecule.py' 2023-10-20T13:07:11,283 adding 'polyply/src/meta_molecule.py' 2023-10-20T13:07:11,285 adding 'polyply/src/minimizer.py' 2023-10-20T13:07:11,287 adding 'polyply/src/nonbond_engine.py' 2023-10-20T13:07:11,289 adding 'polyply/src/persistence.py' 2023-10-20T13:07:11,291 adding 'polyply/src/polyply_parser.py' 2023-10-20T13:07:11,293 adding 'polyply/src/processor.py' 2023-10-20T13:07:11,295 adding 'polyply/src/random_walk.py' 2023-10-20T13:07:11,297 adding 'polyply/src/restraints.py' 2023-10-20T13:07:11,299 adding 'polyply/src/simple_seq_parsers.py' 2023-10-20T13:07:11,302 adding 'polyply/src/top_parser.py' 2023-10-20T13:07:11,305 adding 'polyply/src/topology.py' 2023-10-20T13:07:11,307 adding 'polyply/src/virtual_site_builder.py' 2023-10-20T13:07:11,309 adding 'polyply/tests/__init__.py' 2023-10-20T13:07:11,311 adding 'polyply/tests/example_fixtures.py' 2023-10-20T13:07:11,313 adding 'polyply/tests/test_annotate_lingads.py' 2023-10-20T13:07:11,316 adding 'polyply/tests/test_apply_links.py' 2023-10-20T13:07:11,318 adding 'polyply/tests/test_backmap.py' 2023-10-20T13:07:11,320 adding 'polyply/tests/test_build_file_parser.py' 2023-10-20T13:07:11,322 adding 'polyply/tests/test_build_system.py' 2023-10-20T13:07:11,324 adding 'polyply/tests/test_ff_parser.py' 2023-10-20T13:07:11,325 adding 'polyply/tests/test_gen_coords.py' 2023-10-20T13:07:11,328 adding 'polyply/tests/test_gen_coords_logic.py' 2023-10-20T13:07:11,329 adding 'polyply/tests/test_gen_dna.py' 2023-10-20T13:07:11,331 adding 'polyply/tests/test_gen_params.py' 2023-10-20T13:07:11,333 adding 'polyply/tests/test_gen_seq.py' 2023-10-20T13:07:11,335 adding 'polyply/tests/test_generate_templates.py' 2023-10-20T13:07:11,337 adding 'polyply/tests/test_graph_utils.py' 2023-10-20T13:07:11,339 adding 'polyply/tests/test_itp_files.py' 2023-10-20T13:07:11,341 adding 'polyply/tests/test_lib_files.py' 2023-10-20T13:07:11,343 adding 'polyply/tests/test_linalg.py' 2023-10-20T13:07:11,345 adding 'polyply/tests/test_load_library.py' 2023-10-20T13:07:11,346 adding 'polyply/tests/test_logging.py' 2023-10-20T13:07:11,349 adding 'polyply/tests/test_map_to_molecule.py' 2023-10-20T13:07:11,351 adding 'polyply/tests/test_meta_molecule.py' 2023-10-20T13:07:11,353 adding 'polyply/tests/test_nb_engine.py' 2023-10-20T13:07:11,356 adding 'polyply/tests/test_optimize_geometry.py' 2023-10-20T13:07:11,358 adding 'polyply/tests/test_persistence.py' 2023-10-20T13:07:11,360 adding 'polyply/tests/test_polyply_input.py' 2023-10-20T13:07:11,362 adding 'polyply/tests/test_random_walk.py' 2023-10-20T13:07:11,364 adding 'polyply/tests/test_residue_check.py' 2023-10-20T13:07:11,365 adding 'polyply/tests/test_restraints.py' 2023-10-20T13:07:11,367 adding 'polyply/tests/test_simple_seq_parsers.py' 2023-10-20T13:07:11,369 adding 'polyply/tests/test_top_parser.py' 2023-10-20T13:07:11,372 adding 'polyply/tests/test_topology.py' 2023-10-20T13:07:11,374 adding 'polyply/tests/test_vs_builder.py' 2023-10-20T13:07:11,378 adding 'polyply/tests/test_data/ff/aminoacids.ff' 2023-10-20T13:07:11,379 adding 'polyply/tests/test_data/ff/unknown_file.txt' 2023-10-20T13:07:11,382 adding 'polyply/tests/test_data/gen_params/input/P3HT.martini.2.itp' 2023-10-20T13:07:11,384 adding 'polyply/tests/test_data/gen_params/input/PEO.martini.3.itp' 2023-10-20T13:07:11,385 adding 'polyply/tests/test_data/gen_params/input/PPI.ff' 2023-10-20T13:07:11,386 adding 'polyply/tests/test_data/gen_params/input/PPI.json' 2023-10-20T13:07:11,388 adding 'polyply/tests/test_data/gen_params/input/PS.json' 2023-10-20T13:07:11,390 adding 'polyply/tests/test_data/gen_params/input/PS.martini.2.itp' 2023-10-20T13:07:11,391 adding 'polyply/tests/test_data/gen_params/input/removal.ff' 2023-10-20T13:07:11,393 adding 'polyply/tests/test_data/gen_params/input/test.ff' 2023-10-20T13:07:11,394 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.ff' 2023-10-20T13:07:11,396 adding 'polyply/tests/test_data/gen_params/input/test_edge_attr.json' 2023-10-20T13:07:11,398 adding 'polyply/tests/test_data/gen_params/logging/ERROR_block.ff' 2023-10-20T13:07:11,400 adding 'polyply/tests/test_data/gen_params/logging/ERROR_link.ff' 2023-10-20T13:07:11,401 adding 'polyply/tests/test_data/gen_params/logging/INFO_block.ff' 2023-10-20T13:07:11,403 adding 'polyply/tests/test_data/gen_params/logging/INFO_link.ff' 2023-10-20T13:07:11,404 adding 'polyply/tests/test_data/gen_params/logging/WARNING_block.ff' 2023-10-20T13:07:11,405 adding 'polyply/tests/test_data/gen_params/logging/WARNING_link.ff' 2023-10-20T13:07:11,408 adding 'polyply/tests/test_data/gen_params/ref/G3.itp' 2023-10-20T13:07:11,410 adding 'polyply/tests/test_data/gen_params/ref/P3HT_10.itp' 2023-10-20T13:07:11,412 adding 'polyply/tests/test_data/gen_params/ref/PEO_10.itp' 2023-10-20T13:07:11,414 adding 'polyply/tests/test_data/gen_params/ref/PS_10.itp' 2023-10-20T13:07:11,415 adding 'polyply/tests/test_data/gen_params/ref/end.itp' 2023-10-20T13:07:11,416 adding 'polyply/tests/test_data/gen_params/ref/removal.itp' 2023-10-20T13:07:11,418 adding 'polyply/tests/test_data/gen_params/ref/test_edge_attr_ref.itp' 2023-10-20T13:07:11,420 adding 'polyply/tests/test_data/gen_params/ref/test_rev.itp' 2023-10-20T13:07:11,428 adding 'polyply/tests/test_data/gen_seq/input/molecule_0.itp' 2023-10-20T13:07:11,431 adding 'polyply/tests/test_data/gen_seq/output/PEO_PS.json' 2023-10-20T13:07:11,433 adding 'polyply/tests/test_data/gen_seq/output/PPI.json' 2023-10-20T13:07:11,438 adding 'polyply/tests/test_data/gen_seq/output/lysoPEG.json' 2023-10-20T13:07:11,444 adding 'polyply/tests/test_data/gen_seq/output/lyso_PEG.json' 2023-10-20T13:07:11,446 adding 'polyply/tests/test_data/gen_seq/output/rand_PEG_PPO.json' 2023-10-20T13:07:11,448 adding 'polyply/tests/test_data/gen_seq/ref/PEO_PS_ref.json' 2023-10-20T13:07:11,450 adding 'polyply/tests/test_data/gen_seq/ref/PPI_ref.json' 2023-10-20T13:07:11,453 adding 'polyply/tests/test_data/gen_seq/ref/lyso_PEG.json' 2023-10-20T13:07:11,455 adding 'polyply/tests/test_data/itp/PEO.itp' 2023-10-20T13:07:11,457 adding 'polyply/tests/test_data/json/double_branch.json' 2023-10-20T13:07:11,459 adding 'polyply/tests/test_data/json/fail.json' 2023-10-20T13:07:11,460 adding 'polyply/tests/test_data/json/hyperbranched.json' 2023-10-20T13:07:11,461 adding 'polyply/tests/test_data/json/linear.json' 2023-10-20T13:07:11,462 adding 'polyply/tests/test_data/json/linear_rev.json' 2023-10-20T13:07:11,464 adding 'polyply/tests/test_data/json/single_branch.json' 2023-10-20T13:07:11,467 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/C12E4.itp' 2023-10-20T13:07:11,468 adding 'polyply/tests/test_data/library_tests/2016H66/C12E4/polyply/command' 2023-10-20T13:07:11,470 adding 'polyply/tests/test_data/library_tests/2016H66/PE/PE.json' 2023-10-20T13:07:11,472 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/PE.itp' 2023-10-20T13:07:11,473 adding 'polyply/tests/test_data/library_tests/2016H66/PE/polyply/command' 2023-10-20T13:07:11,475 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/PMA.json' 2023-10-20T13:07:11,478 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/PMA.itp' 2023-10-20T13:07:11,479 adding 'polyply/tests/test_data/library_tests/2016H66/PMA/polyply/command' 2023-10-20T13:07:11,480 adding 'polyply/tests/test_data/library_tests/2016H66/PP/PP.json' 2023-10-20T13:07:11,482 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/PP.itp' 2023-10-20T13:07:11,484 adding 'polyply/tests/test_data/library_tests/2016H66/PP/polyply/command' 2023-10-20T13:07:11,486 adding 'polyply/tests/test_data/library_tests/2016H66/PS/PS.json' 2023-10-20T13:07:11,488 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/PS.itp' 2023-10-20T13:07:11,489 adding 'polyply/tests/test_data/library_tests/2016H66/PS/polyply/command' 2023-10-20T13:07:11,491 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/PVA.json' 2023-10-20T13:07:11,493 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/PVA.itp' 2023-10-20T13:07:11,495 adding 'polyply/tests/test_data/library_tests/2016H66/PVA/polyply/command' 2023-10-20T13:07:11,500 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/P3HT.itp' 2023-10-20T13:07:11,501 adding 'polyply/tests/test_data/library_tests/gromos53A6/P3HT/polyply/command' 2023-10-20T13:07:11,504 adding 'polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/PTMA.itp' 2023-10-20T13:07:11,506 adding 'polyply/tests/test_data/library_tests/ibi_cgm3/PTMA/polyply/command' 2023-10-20T13:07:11,509 adding 'polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/PTMA.itp' 2023-10-20T13:07:11,511 adding 'polyply/tests/test_data/library_tests/ibi_gbcg/PTMA/polyply/command' 2023-10-20T13:07:11,513 adding 'polyply/tests/test_data/library_tests/martini2/PEL/DPPC.itp' 2023-10-20T13:07:11,516 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/PEL.itp' 2023-10-20T13:07:11,518 adding 'polyply/tests/test_data/library_tests/martini2/PEL/polyply/command' 2023-10-20T13:07:11,521 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/PEO.itp' 2023-10-20T13:07:11,522 adding 'polyply/tests/test_data/library_tests/martini2/PEO/polyply/command' 2023-10-20T13:07:11,524 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/PEO_PE.json' 2023-10-20T13:07:11,526 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/PEO_PE.itp' 2023-10-20T13:07:11,527 adding 'polyply/tests/test_data/library_tests/martini2/PEO_PE/polyply/command' 2023-10-20T13:07:11,530 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/PS.itp' 2023-10-20T13:07:11,531 adding 'polyply/tests/test_data/library_tests/martini2/PS/polyply/command' 2023-10-20T13:07:11,568 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.itp' 2023-10-20T13:07:11,572 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/ssDNA.json' 2023-10-20T13:07:11,574 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/command' 2023-10-20T13:07:11,616 adding 'polyply/tests/test_data/library_tests/martini2/ssDNA/polyply/ssDNA.itp' 2023-10-20T13:07:11,624 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/CEL.itp' 2023-10-20T13:07:11,626 adding 'polyply/tests/test_data/library_tests/martini3/CEL/polyply/command' 2023-10-20T13:07:11,628 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/DEX.itp' 2023-10-20T13:07:11,629 adding 'polyply/tests/test_data/library_tests/martini3/DEX/polyply/command' 2023-10-20T13:07:11,631 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/P3HT.itp' 2023-10-20T13:07:11,633 adding 'polyply/tests/test_data/library_tests/martini3/P3HT/polyply/command' 2023-10-20T13:07:11,635 adding 'polyply/tests/test_data/library_tests/martini3/PDMS/polyply/PDMS.itp' 2023-10-20T13:07:11,636 adding 'polyply/tests/test_data/library_tests/martini3/PDMS/polyply/command' 2023-10-20T13:07:11,638 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/PE.itp' 2023-10-20T13:07:11,639 adding 'polyply/tests/test_data/library_tests/martini3/PE/polyply/command' 2023-10-20T13:07:11,641 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/PEO.itp' 2023-10-20T13:07:11,643 adding 'polyply/tests/test_data/library_tests/martini3/PEO/polyply/command' 2023-10-20T13:07:11,646 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/PPE.itp' 2023-10-20T13:07:11,647 adding 'polyply/tests/test_data/library_tests/martini3/PPE/polyply/command' 2023-10-20T13:07:11,652 adding 'polyply/tests/test_data/library_tests/martini3/PROT/init.itp' 2023-10-20T13:07:11,654 adding 'polyply/tests/test_data/library_tests/martini3/PROT/lysozyme_seq.json' 2023-10-20T13:07:11,659 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/PROT.itp' 2023-10-20T13:07:11,660 adding 'polyply/tests/test_data/library_tests/martini3/PROT/polyply/command' 2023-10-20T13:07:11,662 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/PS.itp' 2023-10-20T13:07:11,664 adding 'polyply/tests/test_data/library_tests/martini3/PS/polyply/command' 2023-10-20T13:07:11,666 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/PTMA.itp' 2023-10-20T13:07:11,668 adding 'polyply/tests/test_data/library_tests/martini3/PTMA/polyply/command' 2023-10-20T13:07:11,671 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/PEO.itp' 2023-10-20T13:07:11,673 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PEO/polyply/command' 2023-10-20T13:07:11,690 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/PTMA.itp' 2023-10-20T13:07:11,692 adding 'polyply/tests/test_data/library_tests/oplsaaLigParGen/PTMA/polyply/command' 2023-10-20T13:07:11,716 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/DNA.itp' 2023-10-20T13:07:11,718 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/ref.json' 2023-10-20T13:07:11,744 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/DNA.itp' 2023-10-20T13:07:11,747 adding 'polyply/tests/test_data/library_tests/parmbsc1/DNA/polyply/command' 2023-10-20T13:07:11,748 adding 'polyply/tests/test_data/library_tests/parmbsc1/dsDNA/ref.json' 2023-10-20T13:07:11,769 adding 'polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/DNA.itp' 2023-10-20T13:07:11,772 adding 'polyply/tests/test_data/library_tests/parmbsc1/dsDNA/polyply/command' 2023-10-20T13:07:11,774 adding 'polyply/tests/test_data/polyply/P3HT.martini.2.itp' 2023-10-20T13:07:11,775 adding 'polyply/tests/test_data/polyply/PDADMA.martini.2.itp' 2023-10-20T13:07:11,776 adding 'polyply/tests/test_data/polyply/PE.martini.2.itp' 2023-10-20T13:07:11,778 adding 'polyply/tests/test_data/polyply/PEL_lipid.martini.2.itp' 2023-10-20T13:07:11,779 adding 'polyply/tests/test_data/polyply/PEO.martini.2.itp' 2023-10-20T13:07:11,780 adding 'polyply/tests/test_data/polyply/PEO.martini.3.itp' 2023-10-20T13:07:11,782 adding 'polyply/tests/test_data/polyply/PP.martini.2.itp' 2023-10-20T13:07:11,783 adding 'polyply/tests/test_data/polyply/PS.martini.2.itp' 2023-10-20T13:07:11,784 adding 'polyply/tests/test_data/polyply/PSS.martini.2.itp' 2023-10-20T13:07:11,786 adding 'polyply/tests/test_data/simple_seq_files/test.fasta' 2023-10-20T13:07:11,787 adding 'polyply/tests/test_data/simple_seq_files/test.ig' 2023-10-20T13:07:11,789 adding 'polyply/tests/test_data/simple_seq_files/test.txt' 2023-10-20T13:07:11,790 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.fasta' 2023-10-20T13:07:11,791 adding 'polyply/tests/test_data/simple_seq_files/test_RNA.ig' 2023-10-20T13:07:11,792 adding 'polyply/tests/test_data/simple_seq_files/test_circle.ig' 2023-10-20T13:07:11,793 adding 'polyply/tests/test_data/simple_seq_files/test_fail.ig' 2023-10-20T13:07:11,795 adding 'polyply/tests/test_data/simple_seq_files/test_ig_warning.ig' 2023-10-20T13:07:11,796 adding 'polyply/tests/test_data/simple_seq_files/test_protein.fasta' 2023-10-20T13:07:11,797 adding 'polyply/tests/test_data/struc_build/PEO.bld' 2023-10-20T13:07:11,798 adding 'polyply/tests/test_data/struc_build/PEO.itp' 2023-10-20T13:07:11,803 adding 'polyply/tests/test_data/struc_build/martini_PEO_PS_CNP.itp' 2023-10-20T13:07:11,805 adding 'polyply/tests/test_data/struc_build/system.top' 2023-10-20T13:07:11,807 adding 'polyply/tests/test_data/topology_test/W.itp' 2023-10-20T13:07:11,808 adding 'polyply/tests/test_data/topology_test/cog.gro' 2023-10-20T13:07:11,809 adding 'polyply/tests/test_data/topology_test/cog_missing.gro' 2023-10-20T13:07:11,811 adding 'polyply/tests/test_data/topology_test/complete.gro' 2023-10-20T13:07:11,812 adding 'polyply/tests/test_data/topology_test/fail.gro' 2023-10-20T13:07:11,845 adding 'polyply/tests/test_data/topology_test/ffnonbonded.itp' 2023-10-20T13:07:11,850 adding 'polyply/tests/test_data/topology_test/meta.gro' 2023-10-20T13:07:11,867 adding 'polyply/tests/test_data/topology_test/molecule_0.itp' 2023-10-20T13:07:11,869 adding 'polyply/tests/test_data/topology_test/pdb.top' 2023-10-20T13:07:11,871 adding 'polyply/tests/test_data/topology_test/system.top' 2023-10-20T13:07:11,872 adding 'polyply/tests/test_data/topology_test/test.bld' 2023-10-20T13:07:11,873 adding 'polyply/tests/test_data/topology_test/test.gro' 2023-10-20T13:07:11,874 adding 'polyply/tests/test_data/topology_test/test.itp' 2023-10-20T13:07:11,887 adding 'polyply/tests/test_data/topology_test/test.pdb' 2023-10-20T13:07:11,891 adding 'polyply-1.6.1.data/scripts/polyply' 2023-10-20T13:07:11,893 adding 'polyply-1.6.1.dist-info/AUTHORS' 2023-10-20T13:07:11,895 adding 'polyply-1.6.1.dist-info/LICENSE' 2023-10-20T13:07:11,897 adding 'polyply-1.6.1.dist-info/METADATA' 2023-10-20T13:07:11,899 adding 'polyply-1.6.1.dist-info/WHEEL' 2023-10-20T13:07:11,899 adding 'polyply-1.6.1.dist-info/pbr.json' 2023-10-20T13:07:11,900 adding 'polyply-1.6.1.dist-info/top_level.txt' 2023-10-20T13:07:11,905 adding 'polyply-1.6.1.dist-info/RECORD' 2023-10-20T13:07:11,917 removing build/bdist.linux-armv7l/wheel 2023-10-20T13:07:12,129 Building wheel for polyply (pyproject.toml): finished with status 'done' 2023-10-20T13:07:12,152 Created wheel for polyply: filename=polyply-1.6.1-py2.py3-none-any.whl size=703466 sha256=5fa2fa4b9f391541e92e348c4ef7bbe20c673f379f2346ec1952688e65360680 2023-10-20T13:07:12,153 Stored in directory: /tmp/pip-ephem-wheel-cache-9_5mahys/wheels/31/6a/f6/37eff817e05bbb4ef119a2584eaecad7fca4f0794cf9e10019 2023-10-20T13:07:12,173 Successfully built polyply 2023-10-20T13:07:12,202 Removed build tracker: '/tmp/pip-build-tracker-0gwl_eli'