2023-10-20T23:56:24,630 Created temporary directory: /tmp/pip-build-tracker-vvhyt6zk
2023-10-20T23:56:24,631 Initialized build tracking at /tmp/pip-build-tracker-vvhyt6zk
2023-10-20T23:56:24,632 Created build tracker: /tmp/pip-build-tracker-vvhyt6zk
2023-10-20T23:56:24,632 Entered build tracker: /tmp/pip-build-tracker-vvhyt6zk
2023-10-20T23:56:24,633 Created temporary directory: /tmp/pip-wheel-ce6wx2v9
2023-10-20T23:56:24,636 Created temporary directory: /tmp/pip-ephem-wheel-cache-i9t_xor1
2023-10-20T23:56:24,658 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-20T23:56:24,662 2 location(s) to search for versions of hydra-rbp:
2023-10-20T23:56:24,662 * https://pypi.org/simple/hydra-rbp/
2023-10-20T23:56:24,662 * https://www.piwheels.org/simple/hydra-rbp/
2023-10-20T23:56:24,663 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2023-10-20T23:56:24,664 Getting page https://pypi.org/simple/hydra-rbp/
2023-10-20T23:56:24,665 Found index url https://pypi.org/simple/
2023-10-20T23:56:24,882 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2023-10-20T23:56:24,884   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2023-10-20T23:56:24,885   Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28
2023-10-20T23:56:24,885 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2023-10-20T23:56:24,886 Getting page https://www.piwheels.org/simple/hydra-rbp/
2023-10-20T23:56:24,888 Found index url https://www.piwheels.org/simple/
2023-10-20T23:56:25,060 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2023-10-20T23:56:25,062   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-10-20T23:56:25,062 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2023-10-20T23:56:25,063 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2023-10-20T23:56:25,082 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2023-10-20T23:56:25,100 Collecting hydra-rbp==0.1.21.28
2023-10-20T23:56:25,102   Created temporary directory: /tmp/pip-unpack-xy1smpzf
2023-10-20T23:56:25,325   Downloading hydra_rbp-0.1.21.28.tar.gz (52.4 MB)
2023-10-20T23:56:42,809   Added hydra-rbp==0.1.21.28 from https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz to build tracker '/tmp/pip-build-tracker-vvhyt6zk'
2023-10-20T23:56:42,812   Running setup.py (path:/tmp/pip-wheel-ce6wx2v9/hydra-rbp_c9499285815d4c48b410b85cbb1f3ea5/setup.py) egg_info for package hydra-rbp
2023-10-20T23:56:42,813   Created temporary directory: /tmp/pip-pip-egg-info-33rs0gnm
2023-10-20T23:56:42,814   Preparing metadata (setup.py): started
2023-10-20T23:56:42,815   Running command python setup.py egg_info
2023-10-20T23:56:43,534   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-10-20T23:56:43,534   !!

2023-10-20T23:56:43,535           ********************************************************************************
2023-10-20T23:56:43,536           Requirements should be satisfied by a PEP 517 installer.
2023-10-20T23:56:43,537           If you are using pip, you can try `pip install --use-pep517`.
2023-10-20T23:56:43,537           ********************************************************************************

2023-10-20T23:56:43,538   !!
2023-10-20T23:56:43,539     dist.fetch_build_eggs(dist.setup_requires)
2023-10-20T23:56:46,870   running egg_info
2023-10-20T23:56:46,872   creating /tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info
2023-10-20T23:56:46,898   writing /tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/PKG-INFO
2023-10-20T23:56:46,901   writing dependency_links to /tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/dependency_links.txt
2023-10-20T23:56:46,903   writing entry points to /tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/entry_points.txt
2023-10-20T23:56:46,905   writing requirements to /tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/requires.txt
2023-10-20T23:56:46,906   writing top-level names to /tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/top_level.txt
2023-10-20T23:56:46,907   writing manifest file '/tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/SOURCES.txt'
2023-10-20T23:56:47,015   reading manifest file '/tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/SOURCES.txt'
2023-10-20T23:56:47,016   reading manifest template 'MANIFEST.in'
2023-10-20T23:56:47,020   adding license file 'LICENSE'
2023-10-20T23:56:47,024   writing manifest file '/tmp/pip-pip-egg-info-33rs0gnm/hydra_rbp.egg-info/SOURCES.txt'
2023-10-20T23:56:47,133   Preparing metadata (setup.py): finished with status 'done'
2023-10-20T23:56:47,137   Source in /tmp/pip-wheel-ce6wx2v9/hydra-rbp_c9499285815d4c48b410b85cbb1f3ea5 has version 0.1.21.28, which satisfies requirement hydra-rbp==0.1.21.28 from https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz
2023-10-20T23:56:47,138   Removed hydra-rbp==0.1.21.28 from https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz from build tracker '/tmp/pip-build-tracker-vvhyt6zk'
2023-10-20T23:56:47,145 Created temporary directory: /tmp/pip-unpack-ivoskkor
2023-10-20T23:56:47,146 Created temporary directory: /tmp/pip-unpack-lfuvw5jf
2023-10-20T23:56:47,159 Building wheels for collected packages: hydra-rbp
2023-10-20T23:56:47,163   Created temporary directory: /tmp/pip-wheel-gaohn94a
2023-10-20T23:56:47,163   Building wheel for hydra-rbp (setup.py): started
2023-10-20T23:56:47,165   Destination directory: /tmp/pip-wheel-gaohn94a
2023-10-20T23:56:47,165   Running command python setup.py bdist_wheel
2023-10-20T23:56:47,832   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-10-20T23:56:47,832   !!

2023-10-20T23:56:47,833           ********************************************************************************
2023-10-20T23:56:47,834           Requirements should be satisfied by a PEP 517 installer.
2023-10-20T23:56:47,835           If you are using pip, you can try `pip install --use-pep517`.
2023-10-20T23:56:47,835           ********************************************************************************

2023-10-20T23:56:47,836   !!
2023-10-20T23:56:47,837     dist.fetch_build_eggs(dist.setup_requires)
2023-10-20T23:56:48,317   running bdist_wheel
2023-10-20T23:56:48,417   running build
2023-10-20T23:56:48,417   running build_py
2023-10-20T23:56:48,446   creating build
2023-10-20T23:56:48,446   creating build/lib
2023-10-20T23:56:48,447   creating build/lib/HydRa
2023-10-20T23:56:48,448   copying HydRa/test_data_load.py -> build/lib/HydRa
2023-10-20T23:56:48,450   copying HydRa/__init__.py -> build/lib/HydRa
2023-10-20T23:56:48,452   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2023-10-20T23:56:48,454   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2023-10-20T23:56:48,458   creating build/lib/HydRa/training
2023-10-20T23:56:48,458   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2023-10-20T23:56:48,462   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2023-10-20T23:56:48,464   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2023-10-20T23:56:48,467   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2023-10-20T23:56:48,470   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2023-10-20T23:56:48,473   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2023-10-20T23:56:48,474   creating build/lib/HydRa/preprocessing
2023-10-20T23:56:48,475   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2023-10-20T23:56:48,477   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2023-10-20T23:56:48,479   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2023-10-20T23:56:48,480   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2023-10-20T23:56:48,482   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2023-10-20T23:56:48,484   creating build/lib/HydRa/predictions
2023-10-20T23:56:48,485   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,489   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,490   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,493   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,497   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,499   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,501   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,503   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/lib/HydRa/predictions
2023-10-20T23:56:48,506   creating build/lib/HydRa/models
2023-10-20T23:56:48,507   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2023-10-20T23:56:48,510   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2023-10-20T23:56:48,511   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2023-10-20T23:56:48,515   creating build/lib/HydRa/evaluation
2023-10-20T23:56:48,515   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2023-10-20T23:56:48,517   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2023-10-20T23:56:48,519   creating build/lib/HydRa/preprocessing/Feature_selection
2023-10-20T23:56:48,520   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-10-20T23:56:48,523   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-10-20T23:56:48,525   creating build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,526   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,528   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,529   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,531   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,533   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,535   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,537   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-10-20T23:56:48,538   running egg_info
2023-10-20T23:56:48,591   writing hydra_rbp.egg-info/PKG-INFO
2023-10-20T23:56:48,594   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2023-10-20T23:56:48,596   writing entry points to hydra_rbp.egg-info/entry_points.txt
2023-10-20T23:56:48,597   writing requirements to hydra_rbp.egg-info/requires.txt
2023-10-20T23:56:48,598   writing top-level names to hydra_rbp.egg-info/top_level.txt
2023-10-20T23:56:48,638   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-10-20T23:56:48,641   reading manifest template 'MANIFEST.in'
2023-10-20T23:56:48,644   adding license file 'LICENSE'
2023-10-20T23:56:48,649   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-10-20T23:56:48,652   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2023-10-20T23:56:48,652   !!

2023-10-20T23:56:48,653           ********************************************************************************
2023-10-20T23:56:48,653           ############################
2023-10-20T23:56:48,654           # Package would be ignored #
2023-10-20T23:56:48,654           ############################
2023-10-20T23:56:48,655           Python recognizes 'HydRa.data' as an importable package[^1],
2023-10-20T23:56:48,655           but it is absent from setuptools' `packages` configuration.

2023-10-20T23:56:48,656           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-20T23:56:48,656           package, please make sure that 'HydRa.data' is explicitly added
2023-10-20T23:56:48,657           to the `packages` configuration field.

2023-10-20T23:56:48,658           Alternatively, you can also rely on setuptools' discovery methods
2023-10-20T23:56:48,658           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-20T23:56:48,659           instead of `find_packages(...)`/`find:`).

2023-10-20T23:56:48,660           You can read more about "package discovery" on setuptools documentation page:

2023-10-20T23:56:48,661           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-20T23:56:48,663           If you don't want 'HydRa.data' to be distributed and are
2023-10-20T23:56:48,663           already explicitly excluding 'HydRa.data' via
2023-10-20T23:56:48,664           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-20T23:56:48,664           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-20T23:56:48,665           combination with a more fine grained `package-data` configuration.

2023-10-20T23:56:48,676           You can read more about "package data files" on setuptools documentation page:

2023-10-20T23:56:48,680           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-20T23:56:48,682           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-20T23:56:48,682                 even if it does not contain any `.py` files.
2023-10-20T23:56:48,683                 On the other hand, currently there is no concept of package data
2023-10-20T23:56:48,683                 directory, all directories are treated like packages.
2023-10-20T23:56:48,684           ********************************************************************************

2023-10-20T23:56:48,685   !!
2023-10-20T23:56:48,686     check.warn(importable)
2023-10-20T23:56:48,686   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2023-10-20T23:56:48,687   !!

2023-10-20T23:56:48,700           ********************************************************************************
2023-10-20T23:56:48,700           ############################
2023-10-20T23:56:48,701           # Package would be ignored #
2023-10-20T23:56:48,701           ############################
2023-10-20T23:56:48,702           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2023-10-20T23:56:48,703           but it is absent from setuptools' `packages` configuration.

2023-10-20T23:56:48,704           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-20T23:56:48,704           package, please make sure that 'HydRa.pre_trained' is explicitly added
2023-10-20T23:56:48,705           to the `packages` configuration field.

2023-10-20T23:56:48,706           Alternatively, you can also rely on setuptools' discovery methods
2023-10-20T23:56:48,706           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-20T23:56:48,707           instead of `find_packages(...)`/`find:`).

2023-10-20T23:56:48,707           You can read more about "package discovery" on setuptools documentation page:

2023-10-20T23:56:48,708           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-20T23:56:48,709           If you don't want 'HydRa.pre_trained' to be distributed and are
2023-10-20T23:56:48,710           already explicitly excluding 'HydRa.pre_trained' via
2023-10-20T23:56:48,710           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-20T23:56:48,711           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-20T23:56:48,711           combination with a more fine grained `package-data` configuration.

2023-10-20T23:56:48,712           You can read more about "package data files" on setuptools documentation page:

2023-10-20T23:56:48,713           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-20T23:56:48,714           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-20T23:56:48,715                 even if it does not contain any `.py` files.
2023-10-20T23:56:48,715                 On the other hand, currently there is no concept of package data
2023-10-20T23:56:48,716                 directory, all directories are treated like packages.
2023-10-20T23:56:48,717           ********************************************************************************

2023-10-20T23:56:48,718   !!
2023-10-20T23:56:48,719     check.warn(importable)
2023-10-20T23:56:48,719   creating build/lib/HydRa/data
2023-10-20T23:56:48,720   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-20T23:56:48,721   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-20T23:56:48,721   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2023-10-20T23:56:48,808   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-10-20T23:56:48,836   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-10-20T23:56:48,875   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-20T23:56:49,046   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-10-20T23:56:49,121   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2023-10-20T23:56:49,318   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-10-20T23:56:49,349   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-10-20T23:56:49,387   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2023-10-20T23:56:49,392   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2023-10-20T23:56:49,397   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-10-20T23:56:49,398   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2023-10-20T23:56:49,400   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2023-10-20T23:56:49,402   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2023-10-20T23:56:49,480   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-10-20T23:56:49,482   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2023-10-20T23:56:49,634   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2023-10-20T23:56:49,636   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-20T23:56:49,638   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-20T23:56:49,640   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2023-10-20T23:56:50,607   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-20T23:56:50,608   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-10-20T23:56:50,610   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2023-10-20T23:56:50,679   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2023-10-20T23:56:50,706   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2023-10-20T23:56:50,746   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2023-10-20T23:56:50,867   creating build/lib/HydRa/pre_trained
2023-10-20T23:56:50,868   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-20T23:56:50,894   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-20T23:56:50,918   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2023-10-20T23:56:50,920   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-10-20T23:56:50,981   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2023-10-20T23:56:50,984   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-10-20T23:56:51,043   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-20T23:56:51,046   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-10-20T23:56:51,050   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-10-20T23:56:51,068   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-10-20T23:56:51,085   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-10-20T23:56:54,135   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-10-20T23:56:55,779   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-20T23:56:55,779   !!

2023-10-20T23:56:55,780           ********************************************************************************
2023-10-20T23:56:55,781           Please avoid running ``setup.py`` directly.
2023-10-20T23:56:55,781           Instead, use pypa/build, pypa/installer or other
2023-10-20T23:56:55,782           standards-based tools.

2023-10-20T23:56:55,783           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-20T23:56:55,783           ********************************************************************************

2023-10-20T23:56:55,784   !!
2023-10-20T23:56:55,785     self.initialize_options()
2023-10-20T23:56:55,806   installing to build/bdist.linux-armv7l/wheel
2023-10-20T23:56:55,806   running install
2023-10-20T23:56:55,830   running install_lib
2023-10-20T23:56:55,856   creating build/bdist.linux-armv7l
2023-10-20T23:56:55,857   creating build/bdist.linux-armv7l/wheel
2023-10-20T23:56:55,858   creating build/bdist.linux-armv7l/wheel/HydRa
2023-10-20T23:56:55,859   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-20T23:56:55,862   creating build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,863   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,866   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,869   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,872   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,874   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,877   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-10-20T23:56:55,879   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:55,880   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:55,895   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:55,913   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:55,916   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:59,013   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:59,872   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:59,928   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:59,931   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:56:59,934   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:57:00,337   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:57:00,363   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:57:00,365   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-10-20T23:57:00,396   creating build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,397   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,475   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,507   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,654   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,819   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,843   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,915   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,955   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:00,956   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,480   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,482   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,562   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,564   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,601   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,602   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,608   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,652   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,775   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,779   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,807   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,948   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,949   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,951   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,971   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,974   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:01,976   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:02,011   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:02,013   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-10-20T23:57:02,170   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-20T23:57:02,171   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-20T23:57:02,174   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-20T23:57:02,176   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-10-20T23:57:02,177   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-10-20T23:57:02,179   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-10-20T23:57:02,181   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-20T23:57:02,183   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-20T23:57:02,185   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,186   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,188   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,190   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,191   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,193   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,195   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,197   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-10-20T23:57:02,198   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-10-20T23:57:02,201   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,202   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,206   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,208   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,211   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,215   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,217   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,219   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,221   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-10-20T23:57:02,224   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-20T23:57:02,226   creating build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-20T23:57:02,227   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-20T23:57:02,230   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-20T23:57:02,232   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-10-20T23:57:02,235   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-20T23:57:02,238   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-10-20T23:57:02,239   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-10-20T23:57:02,241   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-10-20T23:57:02,243   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-10-20T23:57:02,245   running install_egg_info
2023-10-20T23:57:02,273   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.28-py3.11.egg-info
2023-10-20T23:57:02,285   running install_scripts
2023-10-20T23:57:02,302   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.28.dist-info/WHEEL
2023-10-20T23:57:02,305   creating '/tmp/pip-wheel-gaohn94a/hydra_rbp-0.1.21.28-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-20T23:57:02,310   adding 'HydRa/HydRa2_0_predict.py'
2023-10-20T23:57:02,314   adding 'HydRa/HydRa_predict.py'
2023-10-20T23:57:02,315   adding 'HydRa/__init__.py'
2023-10-20T23:57:02,316   adding 'HydRa/test_data_load.py'
2023-10-20T23:57:02,704   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2023-10-20T23:57:03,073   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2023-10-20T23:57:05,248   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2023-10-20T23:57:05,823   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2023-10-20T23:57:06,570   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2023-10-20T23:57:09,971   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-10-20T23:57:11,177   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-10-20T23:57:14,581   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2023-10-20T23:57:15,239   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-10-20T23:57:15,823   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-10-20T23:57:15,901   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2023-10-20T23:57:15,945   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2023-10-20T23:57:15,947   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-10-20T23:57:15,949   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2023-10-20T23:57:15,950   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2023-10-20T23:57:17,089   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2023-10-20T23:57:17,160   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-10-20T23:57:18,920   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2023-10-20T23:57:19,001   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2023-10-20T23:57:19,003   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-20T23:57:19,005   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-20T23:57:22,386   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2023-10-20T23:57:22,707   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-20T23:57:22,709   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-10-20T23:57:24,185   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2023-10-20T23:57:24,702   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2023-10-20T23:57:25,287   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2023-10-20T23:57:27,663   adding 'HydRa/data/protVec_100d_3grams.csv'
2023-10-20T23:57:27,734   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2023-10-20T23:57:27,736   adding 'HydRa/evaluation/__init__.py'
2023-10-20T23:57:27,740   adding 'HydRa/models/DNN_seq.py'
2023-10-20T23:57:27,744   adding 'HydRa/models/Sequence_class.py'
2023-10-20T23:57:27,746   adding 'HydRa/models/__init__.py'
2023-10-20T23:57:27,975   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-10-20T23:57:28,213   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-10-20T23:57:28,228   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2023-10-20T23:57:28,839   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2023-10-20T23:57:28,873   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2023-10-20T23:57:29,481   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2023-10-20T23:57:29,582   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-10-20T23:57:29,589   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-10-20T23:57:29,689   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-10-20T23:57:29,796   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-10-20T23:57:36,054   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2023-10-20T23:57:39,591   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2023-10-20T23:57:40,129   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2023-10-20T23:57:40,134   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py'
2023-10-20T23:57:40,136   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py'
2023-10-20T23:57:40,140   adding 'HydRa/predictions/Occlusion_map.py'
2023-10-20T23:57:40,147   adding 'HydRa/predictions/Occlusion_map_v2.py'
2023-10-20T23:57:40,156   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2023-10-20T23:57:40,165   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2023-10-20T23:57:40,167   adding 'HydRa/predictions/__init__.py'
2023-10-20T23:57:40,169   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2023-10-20T23:57:40,171   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2023-10-20T23:57:40,172   adding 'HydRa/preprocessing/__init__.py'
2023-10-20T23:57:40,174   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2023-10-20T23:57:40,175   adding 'HydRa/preprocessing/predict_SS.py'
2023-10-20T23:57:40,177   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2023-10-20T23:57:40,178   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2023-10-20T23:57:40,179   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2023-10-20T23:57:40,180   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2023-10-20T23:57:40,182   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2023-10-20T23:57:40,183   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2023-10-20T23:57:40,184   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2023-10-20T23:57:40,186   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2023-10-20T23:57:40,187   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2023-10-20T23:57:40,189   adding 'HydRa/training/__init__.py'
2023-10-20T23:57:40,192   adding 'HydRa/training/train_HydRa.py'
2023-10-20T23:57:40,197   adding 'HydRa/training/train_HydRa2_0.py'
2023-10-20T23:57:40,202   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2023-10-20T23:57:40,208   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2023-10-20T23:57:40,212   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2023-10-20T23:57:40,215   adding 'hydra_rbp-0.1.21.28.dist-info/LICENSE'
2023-10-20T23:57:40,216   adding 'hydra_rbp-0.1.21.28.dist-info/METADATA'
2023-10-20T23:57:40,218   adding 'hydra_rbp-0.1.21.28.dist-info/WHEEL'
2023-10-20T23:57:40,219   adding 'hydra_rbp-0.1.21.28.dist-info/entry_points.txt'
2023-10-20T23:57:40,219   adding 'hydra_rbp-0.1.21.28.dist-info/top_level.txt'
2023-10-20T23:57:40,221   adding 'hydra_rbp-0.1.21.28.dist-info/RECORD'
2023-10-20T23:57:40,306   removing build/bdist.linux-armv7l/wheel
2023-10-20T23:57:40,556   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2023-10-20T23:57:41,179   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.28-py3-none-any.whl size=53774465 sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc
2023-10-20T23:57:41,180   Stored in directory: /tmp/pip-ephem-wheel-cache-i9t_xor1/wheels/bf/75/d5/39f0a591b07778db8354090436e1312b79edec6a98b8bd5530
2023-10-20T23:57:41,211 Successfully built hydra-rbp
2023-10-20T23:57:42,550 Removed build tracker: '/tmp/pip-build-tracker-vvhyt6zk'