2023-10-22T13:08:29,305 Created temporary directory: /tmp/pip-build-tracker-y2wdn8un 2023-10-22T13:08:29,306 Initialized build tracking at /tmp/pip-build-tracker-y2wdn8un 2023-10-22T13:08:29,306 Created build tracker: /tmp/pip-build-tracker-y2wdn8un 2023-10-22T13:08:29,307 Entered build tracker: /tmp/pip-build-tracker-y2wdn8un 2023-10-22T13:08:29,308 Created temporary directory: /tmp/pip-wheel-7mi90ebu 2023-10-22T13:08:29,311 Created temporary directory: /tmp/pip-ephem-wheel-cache-zgpayn1a 2023-10-22T13:08:29,334 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-22T13:08:29,337 2 location(s) to search for versions of pyhmmer: 2023-10-22T13:08:29,337 * https://pypi.org/simple/pyhmmer/ 2023-10-22T13:08:29,337 * https://www.piwheels.org/simple/pyhmmer/ 2023-10-22T13:08:29,338 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-10-22T13:08:29,339 Getting page https://pypi.org/simple/pyhmmer/ 2023-10-22T13:08:29,340 Found index url https://pypi.org/simple/ 2023-10-22T13:08:29,629 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-10-22T13:08:29,771 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,772 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,773 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,773 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,774 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,775 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,775 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,776 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,777 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,777 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,778 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,779 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-10-22T13:08:29,780 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-10-22T13:08:29,780 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,781 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,781 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,782 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,782 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,783 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,783 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,784 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,784 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,785 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,786 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,786 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,787 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,788 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-10-22T13:08:29,789 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,789 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,790 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,790 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,791 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,791 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,792 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,793 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,793 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,794 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/61/e5f4b60a3ea29110b78672a95dac9bc165727c96732e34868f249e3422e1/pyhmmer-0.1.0a3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,794 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/37/df/8c9ccb8baeec522b05e956beaf899596ada02a3b383dc7a8d259b69e825b/pyhmmer-0.1.0a3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,795 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,796 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,797 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-10-22T13:08:29,798 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,800 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,801 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-10-22T13:08:29,801 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,916 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,917 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,918 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2023-10-22T13:08:29,918 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/da/5e42fc076686aab8588bafb9d3e5c97a6c8bb4b24060eb943836c303cf11/pyhmmer-0.4.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,919 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,920 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,920 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,921 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,921 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/8e/ab/aaf80ebbba238a42a3f37e794ee56fad608ef5c5880dc5701d044d5720fb/pyhmmer-0.4.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,937 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/ff/75b42f302eaf3eae6f87dae0023a54f5bb0c869613ce730bbb064afe57d8/pyhmmer-0.4.5-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,938 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/3c/c22f961311a96364b2fc84ebcd25ee75ce9111f27c9eaf48c1faeeafe8c7/pyhmmer-0.4.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,938 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2023-10-22T13:08:29,943 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,944 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,944 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,945 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,945 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,946 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,946 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/57/9941d06a569a34685928406e5b5d47819417a2379a26233437ca53a3484e/pyhmmer-0.4.6-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,947 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/87/171796b7139a8a44ba960344487f474d65bb5f16c21a088bede3d3cdec33/pyhmmer-0.4.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,947 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-10-22T13:08:29,968 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,969 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,969 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,970 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,970 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,971 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/de/1d/76c728871c542de627e56683ecd2768bad8019744f575bdfe037fbf7889a/pyhmmer-0.4.9-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,973 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,974 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,974 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,977 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,978 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,978 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,981 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:29,982 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,066 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,066 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,066 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,067 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,067 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,068 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,090 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/cd/2ae79c367d9ac8df13d62cd7a7c33f8ae37c4b7084886825e616862fc7c3/pyhmmer-0.7.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/12/df/5d0e476aab5fa0fa99313e9f2c1d641690381724e8d691a4fe42b7734b6e/pyhmmer-0.7.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,092 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,094 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,095 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,095 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9a/d4/0d65fae4b288faaec2eb9cc27db600a01dcf50be1ad4961904340e1b74f6/pyhmmer-0.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,157 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cc/73/fe5f2fab87655bb9eb30f9b6177b1d4b1593873d12960a5e4fee74d9c9f2/pyhmmer-0.8.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,158 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/17/8e/1161db151a5638878ffa1de64d6af0133a3a24400cd02ae6967aef498c4d/pyhmmer-0.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,159 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a6/a2/3d77d36f78245b10175df5b33d4b1d37193dbbb98cf8e7ecc87d35c232a1/pyhmmer-0.10.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,263 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/94/65/e16e47a9bd69a6064172dc6d4297fe893dd062ae9a405a6a912b1f9500f1/pyhmmer-0.10.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,264 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/be/cc28eee47deca0e42809024092b8166160b592d3a1c3e2047845ef750ad4/pyhmmer-0.10.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,264 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6c/55/509cc9eee61d9b081347489ba5989134b51e4d3b572b5ac98d4874100928/pyhmmer-0.10.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,265 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b9/2f/474e98ad103b5df87bcbb02cd0197b40526053030ad81dc945678e5f2662/pyhmmer-0.10.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,265 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/55/8a/297998af3106823ae51b80a4775bb2da00f40d9218d416c758bfe25fcc23/pyhmmer-0.10.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,266 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/e7/2e9c37e221655241dbf29c3c9efc5062de2fea8d7b2e133839ef65a57540/pyhmmer-0.10.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,267 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/07/2df2c12929b741102ff50f05ac5ae4470ff36b7d142f9107820e2b9a96fa/pyhmmer-0.10.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,268 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/de/56efb8c0397dc57ef895ea7c02926bd52edeb17a2c9941a64f0aae822ebb/pyhmmer-0.10.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,268 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/a7/e3dbd35c934d5f0cc4d951cef4bc602cdd60c68ae9acb5d370123f98f06c/pyhmmer-0.10.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,269 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ec/47/ea515d92e2a3ff4f0b30b811374670af18f5c31a533e1a0152b2bb18f2ad/pyhmmer-0.10.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,270 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/73/da/46bb8ae6e94a0137f4811c2ca9dd8e98873c3b2ff45987e694a9ce56f6db/pyhmmer-0.10.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,271 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f4/10/f9cfdcdab0c8e558d12ca5538a529feb94fd84d4f49901ff2a34058e1257/pyhmmer-0.10.3-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,271 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/51/0f/bcabc95f2d8610a874efd5682bd2c0beeae94f32b56ba61ce6aff84dd732/pyhmmer-0.10.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,272 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f0/79/7b10875f3d8b19091bd539c8c55d9ec2141b9d5a32e68e34911d71a65c4a/pyhmmer-0.10.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,272 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4d/eb/d3797944a040927ea33d75f42cf8f2a88d85351c8cebdc1b276865456778/pyhmmer-0.10.3-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,273 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/b8/53ff2ce13b4ec50f3d4e2bbc58a146aeac2ea16941eece5bd7d2191e8c07/pyhmmer-0.10.3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,273 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0a/cc/c4f857cb6337eeb61def8264147637b3a60c12d9c1514fc5b8326d680a66/pyhmmer-0.10.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,274 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6d/79/0a0836573fa481bd0c611b2a05203ccf999046ed91441189b26d0390595c/pyhmmer-0.10.3-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,275 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/1d/e14a5d828378f9ada935608e47836a2b58c08d5f52dc92a1fac3da135c0d/pyhmmer-0.10.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,275 Found link https://files.pythonhosted.org/packages/ff/a7/21a20c1297f7d6975092aa13024cf349f44c83b266ad4965e4e34cbc8166/pyhmmer-0.10.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.10.3 2023-10-22T13:08:30,276 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-10-22T13:08:30,277 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-10-22T13:08:30,278 Found index url https://www.piwheels.org/simple/ 2023-10-22T13:08:30,436 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-10-22T13:08:30,442 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.2-cp311-cp311-linux_armv7l.whl#sha256=d6c200cdc4dc44ba61ccf8cc8776efc2824df2e7f6752b5d3ea0112ef9ef3580 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,442 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.2-cp311-cp311-linux_armv6l.whl#sha256=d6c200cdc4dc44ba61ccf8cc8776efc2824df2e7f6752b5d3ea0112ef9ef3580 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,443 Skipping link: No binaries permitted for pyhmmer: 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https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.2-cp37-cp37m-linux_armv6l.whl#sha256=fc130f57db7a3d251396d47c0b65f851a8649efe849c1b5fe6edf1d7584fe510 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,445 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp311-cp311-linux_armv7l.whl#sha256=21f20a59454f3af348f77dfae127be4dc4659d89fb2a5b8d215d0800401baab9 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,446 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp311-cp311-linux_armv6l.whl#sha256=21f20a59454f3af348f77dfae127be4dc4659d89fb2a5b8d215d0800401baab9 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,446 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp39-cp39-linux_armv7l.whl#sha256=080392c3128396a3e3807316deb771622a30cfd15912daa4618ccc307f573060 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,447 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp39-cp39-linux_armv6l.whl#sha256=080392c3128396a3e3807316deb771622a30cfd15912daa4618ccc307f573060 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,448 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp37-cp37m-linux_armv7l.whl#sha256=f16771752520e098668f0a316f854c36ed2b95b151235a95bda0c510b2925627 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,448 Skipping link: No binaries permitted for pyhmmer: 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https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp39-cp39-linux_armv7l.whl#sha256=bc599f2682ac5c067c98071ddc2b813b7f322ee725995f783a9fa338baf42fca (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,451 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp39-cp39-linux_armv6l.whl#sha256=bc599f2682ac5c067c98071ddc2b813b7f322ee725995f783a9fa338baf42fca (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,452 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp37-cp37m-linux_armv7l.whl#sha256=d3dccbcc605d6187a81a48ed89b005185e14e946e16b01cc495a93a4a4e4893d (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,452 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp37-cp37m-linux_armv6l.whl#sha256=d3dccbcc605d6187a81a48ed89b005185e14e946e16b01cc495a93a4a4e4893d (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-10-22T13:08:30,453 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-10-22T13:08:30,453 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-10-22T13:08:30,476 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-10-22T13:08:30,494 Collecting pyhmmer==0.10.3 2023-10-22T13:08:30,496 Created temporary directory: /tmp/pip-unpack-_tr95cfj 2023-10-22T13:08:30,984 Downloading pyhmmer-0.10.3.tar.gz (11.1 MB) 2023-10-22T13:08:35,275 Added pyhmmer==0.10.3 from https://files.pythonhosted.org/packages/ff/a7/21a20c1297f7d6975092aa13024cf349f44c83b266ad4965e4e34cbc8166/pyhmmer-0.10.3.tar.gz to build tracker '/tmp/pip-build-tracker-y2wdn8un' 2023-10-22T13:08:35,280 Created temporary directory: /tmp/pip-build-env-_oz46xmj 2023-10-22T13:08:35,285 Installing build dependencies: started 2023-10-22T13:08:35,286 Running command pip subprocess to install build dependencies 2023-10-22T13:08:36,493 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-22T13:08:37,035 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-22T13:08:38,608 Collecting setuptools>=46.4 2023-10-22T13:08:38,671 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-22T13:08:40,198 Collecting cython~=3.0 2023-10-22T13:08:41,121 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.4-cp311-cp311-linux_armv7l.whl (11.7 MB) 2023-10-22T13:08:44,021 Installing collected packages: setuptools, cython 2023-10-22T13:08:49,838 Creating /tmp/pip-build-env-_oz46xmj/overlay/local/bin 2023-10-22T13:08:49,840 changing mode of /tmp/pip-build-env-_oz46xmj/overlay/local/bin/cygdb to 755 2023-10-22T13:08:49,842 changing mode of /tmp/pip-build-env-_oz46xmj/overlay/local/bin/cython to 755 2023-10-22T13:08:49,844 changing mode of /tmp/pip-build-env-_oz46xmj/overlay/local/bin/cythonize to 755 2023-10-22T13:08:49,867 Successfully installed cython-3.0.4 setuptools-68.2.2 2023-10-22T13:08:50,144 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-22T13:08:50,145 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-22T13:08:50,479 Installing build dependencies: finished with status 'done' 2023-10-22T13:08:50,482 Getting requirements to build wheel: started 2023-10-22T13:08:50,484 Running command Getting requirements to build wheel 2023-10-22T13:08:51,374 Getting requirements to build wheel: finished with status 'done' 2023-10-22T13:08:51,398 Installing backend dependencies: started 2023-10-22T13:08:51,399 Running command pip subprocess to install backend dependencies 2023-10-22T13:08:52,536 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-22T13:08:53,056 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-22T13:08:53,555 Collecting wheel 2023-10-22T13:08:53,572 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-22T13:08:55,794 Installing collected packages: wheel 2023-10-22T13:08:56,024 Creating /tmp/pip-build-env-_oz46xmj/normal/local/bin 2023-10-22T13:08:56,026 changing mode of /tmp/pip-build-env-_oz46xmj/normal/local/bin/wheel to 755 2023-10-22T13:08:56,038 Successfully installed wheel-0.41.2 2023-10-22T13:08:56,316 [notice] A new release of pip is available: 23.2.1 -> 23.3 2023-10-22T13:08:56,317 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-22T13:08:56,544 Installing backend dependencies: finished with status 'done' 2023-10-22T13:08:56,545 Created temporary directory: /tmp/pip-modern-metadata-cb9oz6ia 2023-10-22T13:08:56,548 Preparing metadata (pyproject.toml): started 2023-10-22T13:08:56,549 Running command Preparing metadata (pyproject.toml) 2023-10-22T13:08:57,355 running dist_info 2023-10-22T13:08:57,368 creating /tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info 2023-10-22T13:08:57,373 writing /tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/PKG-INFO 2023-10-22T13:08:57,377 writing dependency_links to /tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/dependency_links.txt 2023-10-22T13:08:57,378 writing requirements to /tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/requires.txt 2023-10-22T13:08:57,379 writing top-level names to /tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/top_level.txt 2023-10-22T13:08:57,381 writing manifest file '/tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/SOURCES.txt' 2023-10-22T13:08:57,430 reading manifest file '/tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/SOURCES.txt' 2023-10-22T13:08:57,432 reading manifest template 'MANIFEST.in' 2023-10-22T13:08:57,989 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-10-22T13:08:57,991 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-10-22T13:08:57,992 no previously-included directories found matching 'vendor/easel/demotic' 2023-10-22T13:08:57,994 no previously-included directories found matching 'vendor/easel/documentation' 2023-10-22T13:08:57,995 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-10-22T13:08:57,996 no previously-included directories found matching 'vendor/easel/miniapps' 2023-10-22T13:08:57,997 no previously-included directories found matching 'vendor/easel/testsuite' 2023-10-22T13:08:57,998 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-10-22T13:08:58,000 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-10-22T13:08:58,001 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-10-22T13:08:58,002 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-10-22T13:08:58,003 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-10-22T13:08:58,004 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-10-22T13:08:58,006 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-10-22T13:08:58,006 adding license file 'COPYING' 2023-10-22T13:08:58,031 writing manifest file '/tmp/pip-modern-metadata-cb9oz6ia/pyhmmer.egg-info/SOURCES.txt' 2023-10-22T13:08:58,033 creating '/tmp/pip-modern-metadata-cb9oz6ia/pyhmmer-0.10.3.dist-info' 2023-10-22T13:08:58,226 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-22T13:08:58,232 Source in /tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6 has version 0.10.3, which satisfies requirement pyhmmer==0.10.3 from https://files.pythonhosted.org/packages/ff/a7/21a20c1297f7d6975092aa13024cf349f44c83b266ad4965e4e34cbc8166/pyhmmer-0.10.3.tar.gz 2023-10-22T13:08:58,233 Removed pyhmmer==0.10.3 from https://files.pythonhosted.org/packages/ff/a7/21a20c1297f7d6975092aa13024cf349f44c83b266ad4965e4e34cbc8166/pyhmmer-0.10.3.tar.gz from build tracker '/tmp/pip-build-tracker-y2wdn8un' 2023-10-22T13:08:58,240 Created temporary directory: /tmp/pip-unpack-j7xo7k35 2023-10-22T13:08:58,241 Created temporary directory: /tmp/pip-unpack-2z_lq9zf 2023-10-22T13:08:58,247 Building wheels for collected packages: pyhmmer 2023-10-22T13:08:58,251 Created temporary directory: /tmp/pip-wheel-hewklm7b 2023-10-22T13:08:58,251 Destination directory: /tmp/pip-wheel-hewklm7b 2023-10-22T13:08:58,253 Building wheel for pyhmmer (pyproject.toml): started 2023-10-22T13:08:58,254 Running command Building wheel for pyhmmer (pyproject.toml) 2023-10-22T13:08:59,063 running bdist_wheel 2023-10-22T13:08:59,088 running build 2023-10-22T13:08:59,088 running build_py 2023-10-22T13:08:59,096 creating build 2023-10-22T13:08:59,096 creating build/lib.linux-armv7l-cpython-311 2023-10-22T13:08:59,097 creating build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:08:59,098 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:08:59,100 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:08:59,103 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:08:59,105 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:08:59,106 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:08:59,108 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:08:59,110 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:08:59,113 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:08:59,115 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:08:59,118 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,119 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,122 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,125 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,128 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,130 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,132 copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,134 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,137 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,139 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,141 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,143 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,145 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,147 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,150 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel 2023-10-22T13:08:59,153 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,154 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,156 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,159 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,161 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,164 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,166 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,168 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,171 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,173 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,175 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,177 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,180 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,182 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7 2023-10-22T13:08:59,184 running egg_info 2023-10-22T13:08:59,189 writing pyhmmer.egg-info/PKG-INFO 2023-10-22T13:08:59,193 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-10-22T13:08:59,195 writing requirements to pyhmmer.egg-info/requires.txt 2023-10-22T13:08:59,196 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-10-22T13:08:59,212 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-10-22T13:08:59,228 reading manifest template 'MANIFEST.in' 2023-10-22T13:08:59,759 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-10-22T13:08:59,762 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-10-22T13:08:59,765 no previously-included directories found matching 'vendor/easel/demotic' 2023-10-22T13:08:59,767 no previously-included directories found matching 'vendor/easel/documentation' 2023-10-22T13:08:59,769 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-10-22T13:08:59,771 no previously-included directories found matching 'vendor/easel/miniapps' 2023-10-22T13:08:59,774 no previously-included directories found matching 'vendor/easel/testsuite' 2023-10-22T13:08:59,776 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-10-22T13:08:59,778 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-10-22T13:08:59,780 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-10-22T13:08:59,783 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-10-22T13:08:59,785 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-10-22T13:08:59,787 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-10-22T13:08:59,789 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-10-22T13:08:59,790 adding license file 'COPYING' 2023-10-22T13:08:59,822 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-10-22T13:08:59,828 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration. 2023-10-22T13:08:59,829 !! 2023-10-22T13:08:59,830 ******************************************************************************** 2023-10-22T13:08:59,831 ############################ 2023-10-22T13:08:59,831 # Package would be ignored # 2023-10-22T13:08:59,832 ############################ 2023-10-22T13:08:59,833 Python recognizes 'pyhmmer.fileobj' as an importable package[^1], 2023-10-22T13:08:59,834 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,835 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,835 package, please make sure that 'pyhmmer.fileobj' is explicitly added 2023-10-22T13:08:59,836 to the `packages` configuration field. 2023-10-22T13:08:59,836 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,837 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,838 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,840 If you don't want 'pyhmmer.fileobj' to be distributed and are 2023-10-22T13:08:59,840 already explicitly excluding 'pyhmmer.fileobj' via 2023-10-22T13:08:59,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,842 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,843 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,844 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,846 even if it does not contain any `.py` files. 2023-10-22T13:08:59,846 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,847 directory, all directories are treated like packages. 2023-10-22T13:08:59,848 ******************************************************************************** 2023-10-22T13:08:59,849 !! 2023-10-22T13:08:59,849 check.warn(importable) 2023-10-22T13:08:59,850 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration. 2023-10-22T13:08:59,851 !! 2023-10-22T13:08:59,852 ******************************************************************************** 2023-10-22T13:08:59,853 ############################ 2023-10-22T13:08:59,853 # Package would be ignored # 2023-10-22T13:08:59,854 ############################ 2023-10-22T13:08:59,854 Python recognizes 'pyhmmer.reexports' as an importable package[^1], 2023-10-22T13:08:59,855 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,856 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,856 package, please make sure that 'pyhmmer.reexports' is explicitly added 2023-10-22T13:08:59,857 to the `packages` configuration field. 2023-10-22T13:08:59,858 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,858 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,859 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,860 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,862 If you don't want 'pyhmmer.reexports' to be distributed and are 2023-10-22T13:08:59,863 already explicitly excluding 'pyhmmer.reexports' via 2023-10-22T13:08:59,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,864 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,865 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,866 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,868 even if it does not contain any `.py` files. 2023-10-22T13:08:59,868 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,869 directory, all directories are treated like packages. 2023-10-22T13:08:59,869 ******************************************************************************** 2023-10-22T13:08:59,870 !! 2023-10-22T13:08:59,870 check.warn(importable) 2023-10-22T13:08:59,871 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration. 2023-10-22T13:08:59,871 !! 2023-10-22T13:08:59,872 ******************************************************************************** 2023-10-22T13:08:59,872 ############################ 2023-10-22T13:08:59,873 # Package would be ignored # 2023-10-22T13:08:59,873 ############################ 2023-10-22T13:08:59,874 Python recognizes 'pyhmmer.tests.data' as an importable package[^1], 2023-10-22T13:08:59,874 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,875 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,876 package, please make sure that 'pyhmmer.tests.data' is explicitly added 2023-10-22T13:08:59,876 to the `packages` configuration field. 2023-10-22T13:08:59,877 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,878 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,879 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,882 If you don't want 'pyhmmer.tests.data' to be distributed and are 2023-10-22T13:08:59,882 already explicitly excluding 'pyhmmer.tests.data' via 2023-10-22T13:08:59,882 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,884 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,884 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,887 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,888 even if it does not contain any `.py` files. 2023-10-22T13:08:59,888 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,889 directory, all directories are treated like packages. 2023-10-22T13:08:59,890 ******************************************************************************** 2023-10-22T13:08:59,891 !! 2023-10-22T13:08:59,891 check.warn(importable) 2023-10-22T13:08:59,892 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration. 2023-10-22T13:08:59,892 !! 2023-10-22T13:08:59,893 ******************************************************************************** 2023-10-22T13:08:59,894 ############################ 2023-10-22T13:08:59,894 # Package would be ignored # 2023-10-22T13:08:59,895 ############################ 2023-10-22T13:08:59,895 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1], 2023-10-22T13:08:59,896 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,896 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,897 package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added 2023-10-22T13:08:59,897 to the `packages` configuration field. 2023-10-22T13:08:59,898 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,899 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,902 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,903 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,904 If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are 2023-10-22T13:08:59,904 already explicitly excluding 'pyhmmer.tests.data.hmms' via 2023-10-22T13:08:59,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,906 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,907 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,909 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,910 even if it does not contain any `.py` files. 2023-10-22T13:08:59,911 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,911 directory, all directories are treated like packages. 2023-10-22T13:08:59,912 ******************************************************************************** 2023-10-22T13:08:59,913 !! 2023-10-22T13:08:59,914 check.warn(importable) 2023-10-22T13:08:59,914 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration. 2023-10-22T13:08:59,915 !! 2023-10-22T13:08:59,917 ******************************************************************************** 2023-10-22T13:08:59,917 ############################ 2023-10-22T13:08:59,918 # Package would be ignored # 2023-10-22T13:08:59,918 ############################ 2023-10-22T13:08:59,919 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1], 2023-10-22T13:08:59,920 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,921 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,922 package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added 2023-10-22T13:08:59,922 to the `packages` configuration field. 2023-10-22T13:08:59,923 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,924 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,927 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,929 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,930 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,931 If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are 2023-10-22T13:08:59,931 already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via 2023-10-22T13:08:59,932 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,933 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,934 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,935 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,936 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,937 even if it does not contain any `.py` files. 2023-10-22T13:08:59,937 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,938 directory, all directories are treated like packages. 2023-10-22T13:08:59,938 ******************************************************************************** 2023-10-22T13:08:59,939 !! 2023-10-22T13:08:59,939 check.warn(importable) 2023-10-22T13:08:59,940 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration. 2023-10-22T13:08:59,940 !! 2023-10-22T13:08:59,941 ******************************************************************************** 2023-10-22T13:08:59,942 ############################ 2023-10-22T13:08:59,942 # Package would be ignored # 2023-10-22T13:08:59,943 ############################ 2023-10-22T13:08:59,943 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1], 2023-10-22T13:08:59,944 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,945 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,945 package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added 2023-10-22T13:08:59,946 to the `packages` configuration field. 2023-10-22T13:08:59,947 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,947 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,948 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,949 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,950 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,951 If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are 2023-10-22T13:08:59,951 already explicitly excluding 'pyhmmer.tests.data.hmms.db' via 2023-10-22T13:08:59,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,953 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,954 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,957 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,957 even if it does not contain any `.py` files. 2023-10-22T13:08:59,958 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,959 directory, all directories are treated like packages. 2023-10-22T13:08:59,959 ******************************************************************************** 2023-10-22T13:08:59,960 !! 2023-10-22T13:08:59,961 check.warn(importable) 2023-10-22T13:08:59,961 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration. 2023-10-22T13:08:59,961 !! 2023-10-22T13:08:59,962 ******************************************************************************** 2023-10-22T13:08:59,963 ############################ 2023-10-22T13:08:59,963 # Package would be ignored # 2023-10-22T13:08:59,964 ############################ 2023-10-22T13:08:59,964 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1], 2023-10-22T13:08:59,964 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,965 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,966 package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added 2023-10-22T13:08:59,966 to the `packages` configuration field. 2023-10-22T13:08:59,967 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,968 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,969 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,971 If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are 2023-10-22T13:08:59,972 already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via 2023-10-22T13:08:59,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,973 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,973 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,974 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,977 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:08:59,978 even if it does not contain any `.py` files. 2023-10-22T13:08:59,978 On the other hand, currently there is no concept of package data 2023-10-22T13:08:59,979 directory, all directories are treated like packages. 2023-10-22T13:08:59,980 ******************************************************************************** 2023-10-22T13:08:59,981 !! 2023-10-22T13:08:59,982 check.warn(importable) 2023-10-22T13:08:59,982 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration. 2023-10-22T13:08:59,983 !! 2023-10-22T13:08:59,984 ******************************************************************************** 2023-10-22T13:08:59,985 ############################ 2023-10-22T13:08:59,985 # Package would be ignored # 2023-10-22T13:08:59,986 ############################ 2023-10-22T13:08:59,986 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1], 2023-10-22T13:08:59,987 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:08:59,988 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:08:59,989 package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added 2023-10-22T13:08:59,990 to the `packages` configuration field. 2023-10-22T13:08:59,991 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:08:59,991 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:08:59,992 instead of `find_packages(...)`/`find:`). 2023-10-22T13:08:59,993 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:08:59,993 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:08:59,994 If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are 2023-10-22T13:08:59,995 already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via 2023-10-22T13:08:59,995 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:08:59,996 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:08:59,996 combination with a more fine grained `package-data` configuration. 2023-10-22T13:08:59,997 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:08:59,998 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:08:59,999 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:09:00,000 even if it does not contain any `.py` files. 2023-10-22T13:09:00,000 On the other hand, currently there is no concept of package data 2023-10-22T13:09:00,001 directory, all directories are treated like packages. 2023-10-22T13:09:00,001 ******************************************************************************** 2023-10-22T13:09:00,002 !! 2023-10-22T13:09:00,003 check.warn(importable) 2023-10-22T13:09:00,004 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration. 2023-10-22T13:09:00,004 !! 2023-10-22T13:09:00,005 ******************************************************************************** 2023-10-22T13:09:00,006 ############################ 2023-10-22T13:09:00,007 # Package would be ignored # 2023-10-22T13:09:00,007 ############################ 2023-10-22T13:09:00,008 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1], 2023-10-22T13:09:00,009 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:09:00,010 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:09:00,010 package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added 2023-10-22T13:09:00,011 to the `packages` configuration field. 2023-10-22T13:09:00,012 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:09:00,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:09:00,013 instead of `find_packages(...)`/`find:`). 2023-10-22T13:09:00,014 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:09:00,016 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:09:00,017 If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are 2023-10-22T13:09:00,017 already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via 2023-10-22T13:09:00,018 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:09:00,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:09:00,019 combination with a more fine grained `package-data` configuration. 2023-10-22T13:09:00,037 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:09:00,038 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:09:00,039 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:09:00,040 even if it does not contain any `.py` files. 2023-10-22T13:09:00,040 On the other hand, currently there is no concept of package data 2023-10-22T13:09:00,041 directory, all directories are treated like packages. 2023-10-22T13:09:00,041 ******************************************************************************** 2023-10-22T13:09:00,043 !! 2023-10-22T13:09:00,043 check.warn(importable) 2023-10-22T13:09:00,044 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration. 2023-10-22T13:09:00,044 !! 2023-10-22T13:09:00,045 ******************************************************************************** 2023-10-22T13:09:00,046 ############################ 2023-10-22T13:09:00,046 # Package would be ignored # 2023-10-22T13:09:00,047 ############################ 2023-10-22T13:09:00,047 Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1], 2023-10-22T13:09:00,048 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:09:00,049 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:09:00,049 package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added 2023-10-22T13:09:00,050 to the `packages` configuration field. 2023-10-22T13:09:00,051 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:09:00,051 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:09:00,052 instead of `find_packages(...)`/`find:`). 2023-10-22T13:09:00,053 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:09:00,054 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:09:00,055 If you don't want 'pyhmmer.tests.data.msa' to be distributed and are 2023-10-22T13:09:00,056 already explicitly excluding 'pyhmmer.tests.data.msa' via 2023-10-22T13:09:00,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:09:00,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:09:00,058 combination with a more fine grained `package-data` configuration. 2023-10-22T13:09:00,059 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:09:00,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:09:00,064 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:09:00,064 even if it does not contain any `.py` files. 2023-10-22T13:09:00,065 On the other hand, currently there is no concept of package data 2023-10-22T13:09:00,065 directory, all directories are treated like packages. 2023-10-22T13:09:00,066 ******************************************************************************** 2023-10-22T13:09:00,067 !! 2023-10-22T13:09:00,068 check.warn(importable) 2023-10-22T13:09:00,068 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration. 2023-10-22T13:09:00,069 !! 2023-10-22T13:09:00,070 ******************************************************************************** 2023-10-22T13:09:00,071 ############################ 2023-10-22T13:09:00,072 # Package would be ignored # 2023-10-22T13:09:00,072 ############################ 2023-10-22T13:09:00,072 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1], 2023-10-22T13:09:00,073 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:09:00,074 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:09:00,074 package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added 2023-10-22T13:09:00,075 to the `packages` configuration field. 2023-10-22T13:09:00,076 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:09:00,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:09:00,077 instead of `find_packages(...)`/`find:`). 2023-10-22T13:09:00,078 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:09:00,079 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:09:00,080 If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are 2023-10-22T13:09:00,080 already explicitly excluding 'pyhmmer.tests.data.seqs' via 2023-10-22T13:09:00,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:09:00,081 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:09:00,082 combination with a more fine grained `package-data` configuration. 2023-10-22T13:09:00,082 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:09:00,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:09:00,085 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:09:00,086 even if it does not contain any `.py` files. 2023-10-22T13:09:00,086 On the other hand, currently there is no concept of package data 2023-10-22T13:09:00,087 directory, all directories are treated like packages. 2023-10-22T13:09:00,087 ******************************************************************************** 2023-10-22T13:09:00,088 !! 2023-10-22T13:09:00,089 check.warn(importable) 2023-10-22T13:09:00,089 /tmp/pip-build-env-_oz46xmj/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration. 2023-10-22T13:09:00,090 !! 2023-10-22T13:09:00,091 ******************************************************************************** 2023-10-22T13:09:00,091 ############################ 2023-10-22T13:09:00,092 # Package would be ignored # 2023-10-22T13:09:00,092 ############################ 2023-10-22T13:09:00,093 Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1], 2023-10-22T13:09:00,093 but it is absent from setuptools' `packages` configuration. 2023-10-22T13:09:00,094 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-22T13:09:00,095 package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added 2023-10-22T13:09:00,095 to the `packages` configuration field. 2023-10-22T13:09:00,096 Alternatively, you can also rely on setuptools' discovery methods 2023-10-22T13:09:00,097 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-22T13:09:00,097 instead of `find_packages(...)`/`find:`). 2023-10-22T13:09:00,099 You can read more about "package discovery" on setuptools documentation page: 2023-10-22T13:09:00,100 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-22T13:09:00,101 If you don't want 'pyhmmer.tests.data.tables' to be distributed and are 2023-10-22T13:09:00,101 already explicitly excluding 'pyhmmer.tests.data.tables' via 2023-10-22T13:09:00,102 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-22T13:09:00,102 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-22T13:09:00,103 combination with a more fine grained `package-data` configuration. 2023-10-22T13:09:00,104 You can read more about "package data files" on setuptools documentation page: 2023-10-22T13:09:00,104 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-22T13:09:00,106 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-22T13:09:00,106 even if it does not contain any `.py` files. 2023-10-22T13:09:00,107 On the other hand, currently there is no concept of package data 2023-10-22T13:09:00,107 directory, all directories are treated like packages. 2023-10-22T13:09:00,108 ******************************************************************************** 2023-10-22T13:09:00,108 !! 2023-10-22T13:09:00,109 check.warn(importable) 2023-10-22T13:09:00,109 copying pyhmmer/_getid.pxi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,110 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,110 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,111 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,111 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,115 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,116 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,116 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,116 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,117 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,118 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,118 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,119 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,119 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:09:00,120 creating build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,121 copying pyhmmer/fileobj/__init__.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,121 copying pyhmmer/fileobj/bsd.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,122 copying pyhmmer/fileobj/bsd.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,122 copying pyhmmer/fileobj/linux.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,123 copying pyhmmer/fileobj/linux.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,123 copying pyhmmer/fileobj/util.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj 2023-10-22T13:09:00,124 creating build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,125 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,125 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,126 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,126 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,127 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,128 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,129 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-311/pyhmmer/reexports 2023-10-22T13:09:00,129 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests 2023-10-22T13:09:00,130 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data 2023-10-22T13:09:00,130 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data 2023-10-22T13:09:00,130 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms 2023-10-22T13:09:00,131 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms 2023-10-22T13:09:00,131 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-10-22T13:09:00,132 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-10-22T13:09:00,132 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-10-22T13:09:00,133 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-10-22T13:09:00,133 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin 2023-10-22T13:09:00,134 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,135 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,135 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,136 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,137 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,137 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,138 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,138 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,139 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,139 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,140 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,141 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,141 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,142 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,143 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,143 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,144 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,207 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,224 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,226 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,264 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db 2023-10-22T13:09:00,316 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,317 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,323 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,327 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,331 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,335 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,341 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,349 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt 2023-10-22T13:09:00,448 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:09:00,448 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:09:00,452 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:09:00,457 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:09:00,461 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:09:00,542 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,543 copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,545 copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,548 copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,550 copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,554 copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,558 copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,561 copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,564 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,566 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,568 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer 2023-10-22T13:09:00,571 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-10-22T13:09:00,572 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-10-22T13:09:00,574 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-10-22T13:09:00,576 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-10-22T13:09:00,579 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa 2023-10-22T13:09:00,582 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,583 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,600 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,605 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,677 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,680 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,683 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,686 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs 2023-10-22T13:09:00,688 creating build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,689 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,691 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,693 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,696 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,698 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,700 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,702 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,704 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,707 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables 2023-10-22T13:09:00,712 running build_clib 2023-10-22T13:09:00,719 creating build/temp.linux-armv7l-cpython-311 2023-10-22T13:09:00,720 generating "divsufsort.h" for divsufsort library 2023-10-22T13:09:00,720 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-311/divsufsort.h 2023-10-22T13:09:00,723 generating "esl_config.h" for easel library 2023-10-22T13:09:00,724 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -c build/temp.linux-armv7l-cpython-311/have_NEON.c -o build/temp.linux-armv7l-cpython-311/have_NEON.o 2023-10-22T13:09:01,167 arm-linux-gnueabihf-gcc -mfpu=neon build/temp.linux-armv7l-cpython-311/have_NEON.o -o build/temp.linux-armv7l-cpython-311/have_NEON 2023-10-22T13:09:01,272 checking whether compiler can build NEON code... yes, with -mfpu=neon 2023-10-22T13:09:01,274 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_stdio_h.c -o build/temp.linux-armv7l-cpython-311/have_stdio_h.o 2023-10-22T13:09:01,348 checking whether can be included... yes 2023-10-22T13:09:01,350 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-311/have_stdlib_h.o 2023-10-22T13:09:01,434 checking whether can be included... yes 2023-10-22T13:09:01,436 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_string_h.c -o build/temp.linux-armv7l-cpython-311/have_string_h.o 2023-10-22T13:09:01,502 checking whether can be included... yes 2023-10-22T13:09:01,503 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-311/have_inttypes_h.o 2023-10-22T13:09:01,568 checking whether can be included... yes 2023-10-22T13:09:01,570 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_stdint_h.c -o build/temp.linux-armv7l-cpython-311/have_stdint_h.o 2023-10-22T13:09:01,633 checking whether can be included... yes 2023-10-22T13:09:01,634 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_strings_h.c -o build/temp.linux-armv7l-cpython-311/have_strings_h.o 2023-10-22T13:09:01,696 checking whether can be included... yes 2023-10-22T13:09:01,697 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_stat_h.o 2023-10-22T13:09:01,762 checking whether can be included... yes 2023-10-22T13:09:01,763 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_types_h.o 2023-10-22T13:09:01,834 checking whether can be included... yes 2023-10-22T13:09:01,836 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_unistd_h.c -o build/temp.linux-armv7l-cpython-311/have_unistd_h.o 2023-10-22T13:09:01,907 checking whether can be included... yes 2023-10-22T13:09:01,909 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_endian_h.c -o build/temp.linux-armv7l-cpython-311/have_endian_h.o 2023-10-22T13:09:01,972 checking whether can be included... yes 2023-10-22T13:09:01,974 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-311/have_netinet_in_h.o 2023-10-22T13:09:02,062 checking whether can be included... yes 2023-10-22T13:09:02,063 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_param_h.o 2023-10-22T13:09:02,153 checking whether can be included... yes 2023-10-22T13:09:02,156 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_sysctl_h.o 2023-10-22T13:09:02,198 build/temp.linux-armv7l-cpython-311/have_sys_sysctl_h.c:1:10: fatal error: sys/sysctl.h: No such file or directory 2023-10-22T13:09:02,198 1 | #include "sys/sysctl.h" 2023-10-22T13:09:02,199 | ^~~~~~~~~~~~~~ 2023-10-22T13:09:02,199 compilation terminated. 2023-10-22T13:09:02,201 checking whether can be included... no 2023-10-22T13:09:02,203 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-311/have_aligned_alloc.o -Wno-all 2023-10-22T13:09:02,303 build/temp.linux-armv7l-cpython-311/have_aligned_alloc.c: In function ‘main’: 2023-10-22T13:09:02,304 build/temp.linux-armv7l-cpython-311/have_aligned_alloc.c:2:14: warning: ignoring return value of ‘aligned_alloc’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2023-10-22T13:09:02,305 2 | int main() { aligned_alloc(0, 0); return 0; } 2023-10-22T13:09:02,305 | ^~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:02,337 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-311/have_aligned_alloc.bin 2023-10-22T13:09:02,437 checking whether function 'aligned_alloc' is available... yes 2023-10-22T13:09:02,439 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_erfc.c -o build/temp.linux-armv7l-cpython-311/have_erfc.o -Wno-all 2023-10-22T13:09:02,547 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_erfc.o -o build/temp.linux-armv7l-cpython-311/have_erfc.bin 2023-10-22T13:09:02,646 checking whether function 'erfc' is available... yes 2023-10-22T13:09:02,648 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_getpid.c -o build/temp.linux-armv7l-cpython-311/have_getpid.o -Wno-all 2023-10-22T13:09:02,733 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_getpid.o -o build/temp.linux-armv7l-cpython-311/have_getpid.bin 2023-10-22T13:09:02,832 checking whether function 'getpid' is available... yes 2023-10-22T13:09:02,834 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-311/have__mm_malloc.o -Wno-all 2023-10-22T13:09:02,923 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-311/have__mm_malloc.bin 2023-10-22T13:09:03,014 /usr/bin/ld: build/temp.linux-armv7l-cpython-311/have__mm_malloc.o: in function `main': 2023-10-22T13:09:03,015 /tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6/build/temp.linux-armv7l-cpython-311/have__mm_malloc.c:2: undefined reference to `_mm_malloc' 2023-10-22T13:09:03,020 collect2: error: ld returned 1 exit status 2023-10-22T13:09:03,022 checking whether function '_mm_malloc' is available... no 2023-10-22T13:09:03,024 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_popen.c -o build/temp.linux-armv7l-cpython-311/have_popen.o -Wno-all 2023-10-22T13:09:03,151 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_popen.o -o build/temp.linux-armv7l-cpython-311/have_popen.bin 2023-10-22T13:09:03,250 checking whether function 'popen' is available... yes 2023-10-22T13:09:03,252 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-311/have_posix_memalign.o -Wno-all 2023-10-22T13:09:03,353 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-311/have_posix_memalign.bin 2023-10-22T13:09:03,452 checking whether function 'posix_memalign' is available... yes 2023-10-22T13:09:03,454 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-311/have_strcasecmp.o -Wno-all 2023-10-22T13:09:03,529 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-311/have_strcasecmp.bin 2023-10-22T13:09:03,627 checking whether function 'strcasecmp' is available... yes 2023-10-22T13:09:03,629 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_strsep.c -o build/temp.linux-armv7l-cpython-311/have_strsep.o -Wno-all 2023-10-22T13:09:03,709 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_strsep.o -o build/temp.linux-armv7l-cpython-311/have_strsep.bin 2023-10-22T13:09:03,807 checking whether function 'strsep' is available... yes 2023-10-22T13:09:03,809 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sysconf.c -o build/temp.linux-armv7l-cpython-311/have_sysconf.o -Wno-all 2023-10-22T13:09:03,927 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_sysconf.o -o build/temp.linux-armv7l-cpython-311/have_sysconf.bin 2023-10-22T13:09:04,031 checking whether function 'sysconf' is available... yes 2023-10-22T13:09:04,033 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sysctl.c -o build/temp.linux-armv7l-cpython-311/have_sysctl.o -Wno-all 2023-10-22T13:09:04,092 build/temp.linux-armv7l-cpython-311/have_sysctl.c:2:10: fatal error: sys/sysctl.h: No such file or directory 2023-10-22T13:09:04,093 2 | #include 2023-10-22T13:09:04,093 | ^~~~~~~~~~~~~~ 2023-10-22T13:09:04,094 compilation terminated. 2023-10-22T13:09:04,097 checking whether function 'sysctl' is available... no 2023-10-22T13:09:04,098 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_times.c -o build/temp.linux-armv7l-cpython-311/have_times.o -Wno-all 2023-10-22T13:09:04,176 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_times.o -o build/temp.linux-armv7l-cpython-311/have_times.bin 2023-10-22T13:09:04,274 checking whether function 'times' is available... yes 2023-10-22T13:09:04,276 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_fseeko.c -o build/temp.linux-armv7l-cpython-311/have_fseeko.o -Wno-all 2023-10-22T13:09:04,365 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_fseeko.o -o build/temp.linux-armv7l-cpython-311/have_fseeko.bin 2023-10-22T13:09:04,466 checking whether function 'fseeko' is available... yes 2023-10-22T13:09:04,469 generating "p7_config.h" for hmmer library 2023-10-22T13:09:04,470 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -c build/temp.linux-armv7l-cpython-311/have_NEON.c -o build/temp.linux-armv7l-cpython-311/have_NEON.o 2023-10-22T13:09:04,945 arm-linux-gnueabihf-gcc -mfpu=neon build/temp.linux-armv7l-cpython-311/have_NEON.o -o build/temp.linux-armv7l-cpython-311/have_NEON 2023-10-22T13:09:05,046 checking whether compiler can build NEON code... yes, with -mfpu=neon 2023-10-22T13:09:05,048 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_endian_h.c -o build/temp.linux-armv7l-cpython-311/have_endian_h.o 2023-10-22T13:09:05,111 checking whether can be included... yes 2023-10-22T13:09:05,112 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-311/have_inttypes_h.o 2023-10-22T13:09:05,175 checking whether can be included... yes 2023-10-22T13:09:05,177 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_stdint_h.c -o build/temp.linux-armv7l-cpython-311/have_stdint_h.o 2023-10-22T13:09:05,240 checking whether can be included... yes 2023-10-22T13:09:05,241 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_unistd_h.c -o build/temp.linux-armv7l-cpython-311/have_unistd_h.o 2023-10-22T13:09:05,313 checking whether can be included... yes 2023-10-22T13:09:05,315 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_types_h.o 2023-10-22T13:09:05,386 checking whether can be included... yes 2023-10-22T13:09:05,388 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-311/have_netinet_in_h.o 2023-10-22T13:09:05,480 checking whether can be included... yes 2023-10-22T13:09:05,482 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_param_h.o 2023-10-22T13:09:05,597 checking whether can be included... yes 2023-10-22T13:09:05,598 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-311/have_sys_sysctl_h.o 2023-10-22T13:09:05,639 build/temp.linux-armv7l-cpython-311/have_sys_sysctl_h.c:1:10: fatal error: sys/sysctl.h: No such file or directory 2023-10-22T13:09:05,640 1 | #include "sys/sysctl.h" 2023-10-22T13:09:05,641 | ^~~~~~~~~~~~~~ 2023-10-22T13:09:05,642 compilation terminated. 2023-10-22T13:09:05,643 checking whether can be included... no 2023-10-22T13:09:05,645 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_mkstemp.c -o build/temp.linux-armv7l-cpython-311/have_mkstemp.o -Wno-all 2023-10-22T13:09:05,744 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_mkstemp.o -o build/temp.linux-armv7l-cpython-311/have_mkstemp.bin 2023-10-22T13:09:05,842 checking whether function 'mkstemp' is available... yes 2023-10-22T13:09:05,844 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_popen.c -o build/temp.linux-armv7l-cpython-311/have_popen.o -Wno-all 2023-10-22T13:09:05,932 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_popen.o -o build/temp.linux-armv7l-cpython-311/have_popen.bin 2023-10-22T13:09:06,032 checking whether function 'popen' is available... yes 2023-10-22T13:09:06,033 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_putenv.c -o build/temp.linux-armv7l-cpython-311/have_putenv.o -Wno-all 2023-10-22T13:09:06,132 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_putenv.o -o build/temp.linux-armv7l-cpython-311/have_putenv.bin 2023-10-22T13:09:06,232 checking whether function 'putenv' is available... yes 2023-10-22T13:09:06,234 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-311/have_strcasecmp.o -Wno-all 2023-10-22T13:09:06,325 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-311/have_strcasecmp.bin 2023-10-22T13:09:06,440 checking whether function 'strcasecmp' is available... yes 2023-10-22T13:09:06,442 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_strsep.c -o build/temp.linux-armv7l-cpython-311/have_strsep.o -Wno-all 2023-10-22T13:09:06,522 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_strsep.o -o build/temp.linux-armv7l-cpython-311/have_strsep.bin 2023-10-22T13:09:06,620 checking whether function 'strsep' is available... yes 2023-10-22T13:09:06,622 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_times.c -o build/temp.linux-armv7l-cpython-311/have_times.o -Wno-all 2023-10-22T13:09:06,698 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_times.o -o build/temp.linux-armv7l-cpython-311/have_times.bin 2023-10-22T13:09:06,797 checking whether function 'times' is available... yes 2023-10-22T13:09:06,799 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_getpid.c -o build/temp.linux-armv7l-cpython-311/have_getpid.o -Wno-all 2023-10-22T13:09:06,888 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_getpid.o -o build/temp.linux-armv7l-cpython-311/have_getpid.bin 2023-10-22T13:09:06,988 checking whether function 'getpid' is available... yes 2023-10-22T13:09:06,990 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sysctl.c -o build/temp.linux-armv7l-cpython-311/have_sysctl.o -Wno-all 2023-10-22T13:09:07,049 build/temp.linux-armv7l-cpython-311/have_sysctl.c:2:10: fatal error: sys/sysctl.h: No such file or directory 2023-10-22T13:09:07,049 2 | #include 2023-10-22T13:09:07,050 | ^~~~~~~~~~~~~~ 2023-10-22T13:09:07,051 compilation terminated. 2023-10-22T13:09:07,052 checking whether function 'sysctl' is available... no 2023-10-22T13:09:07,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_sysconf.c -o build/temp.linux-armv7l-cpython-311/have_sysconf.o -Wno-all 2023-10-22T13:09:07,171 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_sysconf.o -o build/temp.linux-armv7l-cpython-311/have_sysconf.bin 2023-10-22T13:09:07,275 checking whether function 'sysconf' is available... yes 2023-10-22T13:09:07,277 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_getcwd.c -o build/temp.linux-armv7l-cpython-311/have_getcwd.o -Wno-all 2023-10-22T13:09:07,364 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_getcwd.o -o build/temp.linux-armv7l-cpython-311/have_getcwd.bin 2023-10-22T13:09:07,463 checking whether function 'getcwd' is available... yes 2023-10-22T13:09:07,465 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_chmod.c -o build/temp.linux-armv7l-cpython-311/have_chmod.o -Wno-all 2023-10-22T13:09:07,545 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_chmod.o -o build/temp.linux-armv7l-cpython-311/have_chmod.bin 2023-10-22T13:09:07,643 checking whether function 'chmod' is available... yes 2023-10-22T13:09:07,645 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_stat.c -o build/temp.linux-armv7l-cpython-311/have_stat.o -Wno-all 2023-10-22T13:09:07,727 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_stat.o -o build/temp.linux-armv7l-cpython-311/have_stat.bin 2023-10-22T13:09:07,827 checking whether function 'stat' is available... yes 2023-10-22T13:09:07,830 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_fstat.c -o build/temp.linux-armv7l-cpython-311/have_fstat.o -Wno-all 2023-10-22T13:09:07,924 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_fstat.o -o build/temp.linux-armv7l-cpython-311/have_fstat.bin 2023-10-22T13:09:08,049 checking whether function 'fstat' is available... yes 2023-10-22T13:09:08,051 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-311/have_erfc.c -o build/temp.linux-armv7l-cpython-311/have_erfc.o -Wno-all 2023-10-22T13:09:08,159 arm-linux-gnueabihf-gcc build/temp.linux-armv7l-cpython-311/have_erfc.o -o build/temp.linux-armv7l-cpython-311/have_erfc.bin 2023-10-22T13:09:08,259 checking whether function 'erfc' is available... yes 2023-10-22T13:09:08,262 generating build/temp.linux-armv7l-cpython-311/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-10-22T13:09:08,272 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-10-22T13:09:08,272 creating build/temp.linux-armv7l-cpython-311/vendor 2023-10-22T13:09:08,273 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer 2023-10-22T13:09:08,273 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort 2023-10-22T13:09:08,275 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort/divsufsort.o 2023-10-22T13:09:12,830 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-311/libdivsufsort.a build/temp.linux-armv7l-cpython-311/vendor/hmmer/libdivsufsort/divsufsort.o 2023-10-22T13:09:12,848 generating build/temp.linux-armv7l-cpython-311/libeasel.a from vendor/easel/esl_hyperexp.c, vendor/easel/esl_lognormal.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_distance.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_weibull.c, vendor/easel/esl_normal.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_ssi.c, vendor/easel/esl_threads.c, vendor/easel/esl_msafile_selex.c, vendor/easel/interface_lapack.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_cluster.c, vendor/easel/esl_exponential.c, vendor/easel/esl_gamma.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_wuss.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_random.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_hmm.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_huffman.c, vendor/easel/easel.c, vendor/easel/esl_sqio.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_sse.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_gev.c, vendor/easel/esl_avx.c, vendor/easel/esl_msafile.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_regexp.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_gencode.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_heap.c, vendor/easel/esl_msa.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_sqio_ascii.c, vendor/easel/esl_mpi.c, vendor/easel/esl_recorder.c, vendor/easel/esl_getopts.c, vendor/easel/esl_varint.c, vendor/easel/interface_gsl.c, vendor/easel/esl_arr2.c, vendor/easel/esl_arr3.c, vendor/easel/esl_swat.c, vendor/easel/esl_avx512.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_stats.c, vendor/easel/esl_iset.c, vendor/easel/esl_neon.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_red_black.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_sq.c, vendor/easel/esl_rand64.c, vendor/easel/esl_cpu.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_mem.c, vendor/easel/esl_json.c, vendor/easel/esl_stack.c, vendor/easel/esl_composition.c, vendor/easel/esl_vmx.c, vendor/easel/esl_tree.c, vendor/easel/esl_paml.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_buffer.c, vendor/easel/esl_histogram.c, vendor/easel/esl_alloc.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_graph.c, vendor/easel/esl_msashuffle.c 2023-10-22T13:09:12,849 generating build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-10-22T13:09:12,861 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-10-22T13:09:12,861 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2023-10-22T13:09:12,862 generating build/temp.linux-armv7l-cpython-311/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-10-22T13:09:12,863 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-10-22T13:09:12,864 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-10-22T13:09:12,864 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-10-22T13:09:12,865 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_wuss.o 2023-10-22T13:09:12,866 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_weibull.o 2023-10-22T13:09:12,866 creating build/temp.linux-armv7l-cpython-311/vendor/easel 2023-10-22T13:09:12,867 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_lapack.o 2023-10-22T13:09:12,868 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hyperexp.o 2023-10-22T13:09:12,937 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-10-22T13:09:12,937 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_randomseq.o 2023-10-22T13:09:13,244 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-10-22T13:09:13,245 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:13,246 136 | return status; 2023-10-22T13:09:13,246 | ^~~~~~ 2023-10-22T13:09:13,247 vendor/easel/esl_wuss.c:56:14: note: ‘status’ was declared here 2023-10-22T13:09:13,248 56 | int status; /* success or failure return status */ 2023-10-22T13:09:13,249 | ^~~~~~ 2023-10-22T13:09:13,466 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-10-22T13:09:13,467 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_normal.o 2023-10-22T13:09:13,734 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-10-22T13:09:13,735 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_subcmd.o 2023-10-22T13:09:14,011 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-10-22T13:09:14,012 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ssi.o 2023-10-22T13:09:14,121 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-10-22T13:09:14,122 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_a2m.o 2023-10-22T13:09:14,213 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-10-22T13:09:14,214 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,215 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-10-22T13:09:14,216 | ^~ 2023-10-22T13:09:14,233 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-10-22T13:09:14,234 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,235 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2023-10-22T13:09:14,236 | ^ 2023-10-22T13:09:14,243 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-10-22T13:09:14,244 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,245 862 | if (n > ns->plen) ns->plen = n; 2023-10-22T13:09:14,246 | ^ 2023-10-22T13:09:14,249 vendor/easel/esl_ssi.c:893:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,250 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-10-22T13:09:14,251 | ^ 2023-10-22T13:09:14,253 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-10-22T13:09:14,255 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,255 941 | if (n > ns->slen) ns->slen = n; 2023-10-22T13:09:14,256 | ^ 2023-10-22T13:09:14,260 vendor/easel/esl_ssi.c:957:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,261 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-10-22T13:09:14,262 | ^ 2023-10-22T13:09:14,272 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-10-22T13:09:14,273 vendor/easel/esl_ssi.c:1143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,274 1143 | for (i = 0; i < ns->nprimary; i++) 2023-10-22T13:09:14,276 | ^ 2023-10-22T13:09:14,279 vendor/easel/esl_ssi.c:1161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,280 1161 | for (i = 0; i < ns->nprimary; i++) 2023-10-22T13:09:14,281 | ^ 2023-10-22T13:09:14,284 vendor/easel/esl_ssi.c:1181:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,285 1181 | for (i = 0; i < ns->nsecondary; i++) 2023-10-22T13:09:14,286 | ^ 2023-10-22T13:09:14,289 vendor/easel/esl_ssi.c:1198:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,290 1198 | for (i = 0; i < ns->nsecondary; i++) 2023-10-22T13:09:14,291 | ^ 2023-10-22T13:09:14,296 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-10-22T13:09:14,298 vendor/easel/esl_ssi.c:1247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,299 1247 | for (i = 0; i < ns->nprimary; i++) 2023-10-22T13:09:14,300 | ^ 2023-10-22T13:09:14,302 vendor/easel/esl_ssi.c:1253:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,303 1253 | for (i = 0; i < ns->nsecondary; i++) 2023-10-22T13:09:14,304 | ^ 2023-10-22T13:09:14,311 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-10-22T13:09:14,313 vendor/easel/esl_ssi.c:1345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,314 1345 | for (i = 0; i < ns->nprimary; i++) { 2023-10-22T13:09:14,315 | ^ 2023-10-22T13:09:14,318 vendor/easel/esl_ssi.c:1364:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,319 1364 | for (i = 0; i < ns->nsecondary; i++) 2023-10-22T13:09:14,319 | ^ 2023-10-22T13:09:14,322 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,323 1370 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-10-22T13:09:14,324 | ^ 2023-10-22T13:09:14,327 vendor/easel/esl_ssi.c:1371:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,327 1371 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-10-22T13:09:14,328 | ^ 2023-10-22T13:09:14,331 vendor/easel/esl_ssi.c:1372:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:14,332 1372 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-10-22T13:09:14,332 | ^ 2023-10-22T13:09:14,552 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_lognormal.o from vendor/easel/esl_lognormal.c 2023-10-22T13:09:14,553 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_lognormal.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_lognormal.o 2023-10-22T13:09:14,917 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-10-22T13:09:14,917 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_minimizer.o 2023-10-22T13:09:15,251 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-10-22T13:09:15,252 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cluster.o 2023-10-22T13:09:15,411 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-10-22T13:09:15,413 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:15,414 243 | if (opt_fx) *opt_fx = fx; 2023-10-22T13:09:15,415 | ~~~~~~~~^~~~ 2023-10-22T13:09:15,416 vendor/easel/esl_minimizer.c:119:10: note: ‘fx’ was declared here 2023-10-22T13:09:15,417 119 | double fx; 2023-10-22T13:09:15,418 | ^~ 2023-10-22T13:09:15,419 In function ‘brent’, 2023-10-22T13:09:15,420 inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7: 2023-10-22T13:09:15,421 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:15,422 720 | m = 0.5 * (a+b); 2023-10-22T13:09:15,423 | ~~^~~ 2023-10-22T13:09:15,423 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-10-22T13:09:15,424 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-10-22T13:09:15,425 118 | double ax,bx,cx; 2023-10-22T13:09:15,426 | ^~ 2023-10-22T13:09:15,426 In function ‘brent’, 2023-10-22T13:09:15,427 inlined from ‘esl_min_ConjugateGradientDescent’ at vendor/easel/esl_minimizer.c:192:7: 2023-10-22T13:09:15,428 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:15,429 720 | m = 0.5 * (a+b); 2023-10-22T13:09:15,430 | ~~^~~ 2023-10-22T13:09:15,431 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-10-22T13:09:15,431 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-10-22T13:09:15,432 118 | double ax,bx,cx; 2023-10-22T13:09:15,433 | ^~ 2023-10-22T13:09:15,439 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-10-22T13:09:15,440 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:15,441 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-10-22T13:09:15,442 | ^ 2023-10-22T13:09:15,568 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-10-22T13:09:15,569 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_exponential.o 2023-10-22T13:09:15,926 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-10-22T13:09:15,927 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_random.o 2023-10-22T13:09:16,026 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-10-22T13:09:16,026 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_distance.o 2023-10-22T13:09:16,115 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-10-22T13:09:16,116 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gamma.o 2023-10-22T13:09:16,135 vendor/easel/esl_random.c: In function ‘esl_rnd_Roll’: 2023-10-22T13:09:16,137 vendor/easel/esl_random.c:319:54: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:16,137 319 | do { u = esl_random_uint32(r) / factor; } while (u >= n); 2023-10-22T13:09:16,138 | ^~ 2023-10-22T13:09:16,146 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-10-22T13:09:16,147 vendor/easel/esl_random.c:655:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-10-22T13:09:16,148 655 | for (i = 0; i < a; i++) 2023-10-22T13:09:16,149 | ^ 2023-10-22T13:09:16,614 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-10-22T13:09:16,615 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_threads.o 2023-10-22T13:09:16,688 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-10-22T13:09:16,689 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_selex.o 2023-10-22T13:09:16,954 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2023-10-22T13:09:16,955 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dsqdata.o 2023-10-22T13:09:16,971 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-10-22T13:09:16,972 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dmatrix.o 2023-10-22T13:09:17,200 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2023-10-22T13:09:17,201 vendor/easel/esl_dsqdata.c:255:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:17,202 255 | if (alphatype != dd->abc_r->type) 2023-10-22T13:09:17,203 | ^~ 2023-10-22T13:09:17,218 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-10-22T13:09:17,219 vendor/easel/esl_dsqdata.c:617:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:17,220 617 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-10-22T13:09:17,221 | ^ 2023-10-22T13:09:17,222 vendor/easel/esl_dsqdata.c:618:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:17,223 618 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-10-22T13:09:17,224 | ^ 2023-10-22T13:09:17,225 vendor/easel/esl_dsqdata.c:619:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:17,226 619 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-10-22T13:09:17,227 | ^ 2023-10-22T13:09:17,228 vendor/easel/esl_dsqdata.c:620:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:17,229 620 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-10-22T13:09:17,229 | ^ 2023-10-22T13:09:17,231 vendor/easel/esl_dsqdata.c:677:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:17,232 677 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-10-22T13:09:17,233 | ^~ 2023-10-22T13:09:17,234 vendor/easel/esl_dsqdata.c:683:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:17,235 683 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-10-22T13:09:17,236 | ^~ 2023-10-22T13:09:17,237 vendor/easel/esl_dsqdata.c:688:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:17,238 688 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-10-22T13:09:17,238 | ^~ 2023-10-22T13:09:17,239 vendor/easel/esl_dsqdata.c:693:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:17,240 693 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-10-22T13:09:17,241 | ^~ 2023-10-22T13:09:17,288 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-10-22T13:09:17,289 vendor/easel/esl_dsqdata.c:1130:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-10-22T13:09:17,290 1130 | } 2023-10-22T13:09:17,291 | ^ 2023-10-22T13:09:17,298 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-10-22T13:09:17,299 vendor/easel/esl_dsqdata.c:1053:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-10-22T13:09:17,300 1053 | } 2023-10-22T13:09:17,301 | ^ 2023-10-22T13:09:17,873 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-10-22T13:09:17,873 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixdchlet.o 2023-10-22T13:09:19,070 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-10-22T13:09:19,071 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile2.o 2023-10-22T13:09:19,130 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-10-22T13:09:19,131 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msacluster.o 2023-10-22T13:09:19,279 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2023-10-22T13:09:19,280 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sse.o 2023-10-22T13:09:19,321 In file included from vendor/easel/esl_msafile2.c:26: 2023-10-22T13:09:19,322 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-10-22T13:09:19,323 vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,324 432 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-10-22T13:09:19,325 | ^ 2023-10-22T13:09:19,325 vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’ 2023-10-22T13:09:19,326 632 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-10-22T13:09:19,327 | ^~~~~~~ 2023-10-22T13:09:19,328 vendor/easel/easel.h:432:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:19,328 432 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-10-22T13:09:19,329 | ^~~ 2023-10-22T13:09:19,330 vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’ 2023-10-22T13:09:19,331 632 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-10-22T13:09:19,332 | ^~~~~~~ 2023-10-22T13:09:19,333 vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,334 432 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-10-22T13:09:19,334 | ^ 2023-10-22T13:09:19,335 vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’ 2023-10-22T13:09:19,336 641 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-10-22T13:09:19,337 | ^~~~~~~ 2023-10-22T13:09:19,338 vendor/easel/easel.h:432:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:19,339 432 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-10-22T13:09:19,340 | ^~~ 2023-10-22T13:09:19,340 vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’ 2023-10-22T13:09:19,341 641 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-10-22T13:09:19,343 | ^~~~~~~ 2023-10-22T13:09:19,380 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-10-22T13:09:19,381 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio_ncbi.o 2023-10-22T13:09:19,500 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-10-22T13:09:19,503 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hmm.o 2023-10-22T13:09:19,584 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-10-22T13:09:19,585 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_huffman.o 2023-10-22T13:09:19,619 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-10-22T13:09:19,620 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,621 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-10-22T13:09:19,622 | ^~ 2023-10-22T13:09:19,624 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,624 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-10-22T13:09:19,625 | ^~ 2023-10-22T13:09:19,627 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,628 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-10-22T13:09:19,629 | ^~ 2023-10-22T13:09:19,644 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-10-22T13:09:19,645 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,646 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,647 | ^~ 2023-10-22T13:09:19,649 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-10-22T13:09:19,650 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,651 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,652 | ^~ 2023-10-22T13:09:19,654 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-10-22T13:09:19,655 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,656 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,657 | ^~ 2023-10-22T13:09:19,661 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-10-22T13:09:19,662 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,663 1036 | if (status != eslOK || nres != W) { 2023-10-22T13:09:19,664 | ^~ 2023-10-22T13:09:19,666 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,667 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,668 | ^~ 2023-10-22T13:09:19,682 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-10-22T13:09:19,684 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,685 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-10-22T13:09:19,686 | ^ 2023-10-22T13:09:19,691 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,692 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-10-22T13:09:19,692 | ^~ 2023-10-22T13:09:19,694 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-10-22T13:09:19,696 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,697 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-10-22T13:09:19,698 | ^ 2023-10-22T13:09:19,700 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,701 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-10-22T13:09:19,702 | ^~ 2023-10-22T13:09:19,703 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,704 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-10-22T13:09:19,705 | ^ 2023-10-22T13:09:19,706 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,707 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-10-22T13:09:19,708 | ^ 2023-10-22T13:09:19,710 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,711 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2023-10-22T13:09:19,711 | ^ 2023-10-22T13:09:19,713 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,714 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2023-10-22T13:09:19,715 | ^ 2023-10-22T13:09:19,716 In file included from vendor/easel/esl_hmm.c:9: 2023-10-22T13:09:19,717 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-10-22T13:09:19,718 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,719 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:09:19,720 | ^ 2023-10-22T13:09:19,721 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:09:19,721 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-10-22T13:09:19,722 | ^~~~~~~ 2023-10-22T13:09:19,723 vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:19,723 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:09:19,724 | ^~~ 2023-10-22T13:09:19,725 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:09:19,725 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-10-22T13:09:19,726 | ^~~~~~~ 2023-10-22T13:09:19,727 vendor/easel/esl_sqio_ncbi.c:1526:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,728 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-10-22T13:09:19,729 | ^ 2023-10-22T13:09:19,729 vendor/easel/esl_sqio_ncbi.c:1527:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,730 1527 | if (inx < volume->end_seq) break; 2023-10-22T13:09:19,731 | ^ 2023-10-22T13:09:19,732 vendor/easel/esl_sqio_ncbi.c:1532:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,733 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2023-10-22T13:09:19,734 | ^~ 2023-10-22T13:09:19,735 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,736 1539 | if (ncbi->index_start == -1 || inx > end) { 2023-10-22T13:09:19,737 | ^~ 2023-10-22T13:09:19,737 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,739 1539 | if (ncbi->index_start == -1 || inx > end) { 2023-10-22T13:09:19,740 | ^ 2023-10-22T13:09:19,741 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,742 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-10-22T13:09:19,743 | ^~ 2023-10-22T13:09:19,745 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,746 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-10-22T13:09:19,747 | ^~ 2023-10-22T13:09:19,749 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,750 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-10-22T13:09:19,751 | ^~ 2023-10-22T13:09:19,753 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-10-22T13:09:19,755 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,756 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,758 | ^~ 2023-10-22T13:09:19,760 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,761 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-10-22T13:09:19,762 | ^~ 2023-10-22T13:09:19,764 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,765 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-10-22T13:09:19,766 | ^~ 2023-10-22T13:09:19,768 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-10-22T13:09:19,770 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,771 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,772 | ^~ 2023-10-22T13:09:19,775 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,775 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-10-22T13:09:19,776 | ^~ 2023-10-22T13:09:19,782 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,783 1754 | if (ncbi->seq_apos - sq->doff < size) { 2023-10-22T13:09:19,784 | ^ 2023-10-22T13:09:19,787 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-10-22T13:09:19,789 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,790 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,792 | ^~ 2023-10-22T13:09:19,795 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,796 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-10-22T13:09:19,797 | ^~ 2023-10-22T13:09:19,804 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-10-22T13:09:19,807 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,808 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-10-22T13:09:19,809 | ^~ 2023-10-22T13:09:19,815 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,816 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-10-22T13:09:19,817 | ^~ 2023-10-22T13:09:19,825 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-10-22T13:09:19,827 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,828 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2023-10-22T13:09:19,829 | ^ 2023-10-22T13:09:19,831 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,832 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2023-10-22T13:09:19,833 | ^ 2023-10-22T13:09:19,836 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,837 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-10-22T13:09:19,838 | ^~ 2023-10-22T13:09:19,841 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-10-22T13:09:19,843 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,844 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2023-10-22T13:09:19,845 | ^ 2023-10-22T13:09:19,847 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,848 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2023-10-22T13:09:19,849 | ^ 2023-10-22T13:09:19,852 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:19,853 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-10-22T13:09:19,854 | ^~ 2023-10-22T13:09:19,861 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-10-22T13:09:19,863 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:19,865 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-10-22T13:09:19,866 | ^~ 2023-10-22T13:09:20,559 generating build/temp.linux-armv7l-cpython-311/vendor/easel/easel.o from vendor/easel/easel.c 2023-10-22T13:09:20,560 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/easel.o 2023-10-22T13:09:20,849 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-10-22T13:09:20,852 vendor/easel/easel.c:1942:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:20,853 1942 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-10-22T13:09:20,854 | ^~~~~~~~~~~~~~~~ 2023-10-22T13:09:20,855 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-10-22T13:09:20,855 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_keyhash.o 2023-10-22T13:09:21,053 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-10-22T13:09:21,054 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:21,055 94 | for (h = 0; h < kh->hashsize; h++) 2023-10-22T13:09:21,056 | ^ 2023-10-22T13:09:21,057 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-10-22T13:09:21,058 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:21,059 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-10-22T13:09:21,060 | ^ 2023-10-22T13:09:21,061 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-10-22T13:09:21,062 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:21,063 215 | for (h = 0; h < kh->hashsize; h++) 2023-10-22T13:09:21,064 | ^ 2023-10-22T13:09:21,066 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-10-22T13:09:21,067 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:21,068 310 | if (kh->nkeys > 3*kh->hashsize) 2023-10-22T13:09:21,069 | ^ 2023-10-22T13:09:21,072 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-10-22T13:09:21,073 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:21,074 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-10-22T13:09:21,074 | ^ 2023-10-22T13:09:21,077 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-10-22T13:09:21,078 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:21,079 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-10-22T13:09:21,081 | ^ 2023-10-22T13:09:21,647 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-10-22T13:09:21,648 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_quicksort.o 2023-10-22T13:09:21,970 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2023-10-22T13:09:21,971 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_regexp.o 2023-10-22T13:09:22,488 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-10-22T13:09:22,489 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gencode.o 2023-10-22T13:09:22,519 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-10-22T13:09:22,520 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio.o 2023-10-22T13:09:23,799 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-10-22T13:09:23,800 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dirichlet.o 2023-10-22T13:09:24,088 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-10-22T13:09:24,089 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_scorematrix.o 2023-10-22T13:09:24,232 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-10-22T13:09:24,233 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vectorops.o 2023-10-22T13:09:24,475 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-10-22T13:09:24,476 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gumbel.o 2023-10-22T13:09:25,073 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-10-22T13:09:25,073 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_psiblast.o 2023-10-22T13:09:25,390 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-10-22T13:09:25,391 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_workqueue.o 2023-10-22T13:09:25,462 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-10-22T13:09:25,463 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ratematrix.o 2023-10-22T13:09:25,682 vendor/easel/esl_msafile_psiblast.c: In function ‘esl_msafile_psiblast_Read’: 2023-10-22T13:09:25,683 vendor/easel/esl_msafile_psiblast.c:229:12: warning: ‘block_seq_len’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:25,684 229 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); 2023-10-22T13:09:25,685 | ^ 2023-10-22T13:09:25,685 vendor/easel/esl_msafile_psiblast.c:195:30: note: ‘block_seq_len’ was declared here 2023-10-22T13:09:25,686 195 | esl_pos_t block_seq_start, block_seq_len; 2023-10-22T13:09:25,687 | ^~~~~~~~~~~~~ 2023-10-22T13:09:25,688 vendor/easel/esl_msafile_psiblast.c:228:12: warning: ‘block_seq_start’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:25,689 228 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); 2023-10-22T13:09:25,690 | ^ 2023-10-22T13:09:25,691 vendor/easel/esl_msafile_psiblast.c:195:13: note: ‘block_seq_start’ was declared here 2023-10-22T13:09:25,692 195 | esl_pos_t block_seq_start, block_seq_len; 2023-10-22T13:09:25,692 | ^~~~~~~~~~~~~~~ 2023-10-22T13:09:26,238 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-10-22T13:09:26,239 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gev.o 2023-10-22T13:09:26,329 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-10-22T13:09:26,330 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_afa.o 2023-10-22T13:09:26,428 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-10-22T13:09:26,428 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_heap.o 2023-10-22T13:09:26,856 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-10-22T13:09:26,857 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msa.o 2023-10-22T13:09:26,938 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-10-22T13:09:26,939 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx.o 2023-10-22T13:09:27,056 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-10-22T13:09:27,057 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile.o 2023-10-22T13:09:27,061 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-10-22T13:09:27,062 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mpi.o 2023-10-22T13:09:27,262 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-10-22T13:09:27,263 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_recorder.o 2023-10-22T13:09:27,650 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-10-22T13:09:27,651 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr3.o 2023-10-22T13:09:27,945 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-10-22T13:09:27,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_swat.o 2023-10-22T13:09:28,021 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-10-22T13:09:28,022 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_getopts.o 2023-10-22T13:09:28,272 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-10-22T13:09:28,273 vendor/easel/esl_getopts.c:1391:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:28,274 1391 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-10-22T13:09:28,275 | ^~ 2023-10-22T13:09:28,326 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-10-22T13:09:28,326 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_neon.o 2023-10-22T13:09:28,382 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-10-22T13:09:28,383 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx512.o 2023-10-22T13:09:28,511 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-10-22T13:09:28,512 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alphabet.o 2023-10-22T13:09:28,698 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-10-22T13:09:28,699 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:28,700 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-10-22T13:09:28,701 | ^~ 2023-10-22T13:09:29,428 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-10-22T13:09:29,429 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stretchexp.o 2023-10-22T13:09:30,053 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-10-22T13:09:30,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_stockholm.o 2023-10-22T13:09:30,305 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-10-22T13:09:30,306 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_varint.o 2023-10-22T13:09:30,650 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-10-22T13:09:30,651 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stats.o 2023-10-22T13:09:30,862 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-10-22T13:09:30,863 vendor/easel/esl_varint.c:471:11: warning: ‘grp’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:30,864 471 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-10-22T13:09:30,865 | ~~~~^~~~~~~ 2023-10-22T13:09:30,866 vendor/easel/esl_varint.c:461:12: note: ‘grp’ was declared here 2023-10-22T13:09:30,867 461 | uint64_t grp; // current k-bit code group 2023-10-22T13:09:30,868 | ^~~ 2023-10-22T13:09:30,940 generating build/temp.linux-armv7l-cpython-311/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-10-22T13:09:30,941 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_gsl.o 2023-10-22T13:09:31,015 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-10-22T13:09:31,016 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr2.o 2023-10-22T13:09:31,279 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-10-22T13:09:31,280 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixgev.o 2023-10-22T13:09:31,712 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_iset.o from vendor/easel/esl_iset.c 2023-10-22T13:09:31,713 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_iset.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_iset.o 2023-10-22T13:09:31,887 vendor/easel/esl_iset.c: In function ‘esl_iset_monoCobalt’: 2023-10-22T13:09:31,889 vendor/easel/esl_iset.c:127:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:31,890 127 | for (v = 0; v < n; v++) a[v] = n-v-1; // initialize by putting all vertices into array a 2023-10-22T13:09:31,891 | ^ 2023-10-22T13:09:31,892 vendor/easel/esl_iset.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:31,893 131 | for (j = 0; j < n; j++) 2023-10-22T13:09:31,894 | ^ 2023-10-22T13:09:31,895 vendor/easel/esl_iset.c:135:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:31,896 135 | for (i = n; i < n+nb; i++) 2023-10-22T13:09:31,897 | ^ 2023-10-22T13:09:31,898 vendor/easel/esl_iset.c: In function ‘esl_iset_biCobalt’: 2023-10-22T13:09:31,899 vendor/easel/esl_iset.c:209:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:31,900 209 | for (v = 0; v < n; v++) a[v] = n-v-1; // initialize by putting all vertices into an array 2023-10-22T13:09:31,901 | ^ 2023-10-22T13:09:31,902 vendor/easel/esl_iset.c:213:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:31,903 213 | for (j = 0; j n; pos++) 2023-10-22T13:09:34,678 | ^ 2023-10-22T13:09:34,679 vendor/easel/esl_sq.c:1647:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘long long int’} [-Wsign-compare] 2023-10-22T13:09:34,680 1647 | for (pos = 1; pos <= sq->n; pos++) 2023-10-22T13:09:34,681 | ^~ 2023-10-22T13:09:34,720 In function ‘phylip_check_interleaved’, 2023-10-22T13:09:34,721 inlined from ‘esl_msafile_phylip_CheckFileFormat’ at vendor/easel/esl_msafile_phylip.c:389:13: 2023-10-22T13:09:34,722 vendor/easel/esl_msafile_phylip.c:739:16: warning: ‘nres1’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:34,723 739 | if (nres1+nres2 == alen) break; 2023-10-22T13:09:34,724 | ~~~~~^~~~~~ 2023-10-22T13:09:34,725 vendor/easel/esl_msafile_phylip.c: In function ‘esl_msafile_phylip_CheckFileFormat’: 2023-10-22T13:09:34,726 vendor/easel/esl_msafile_phylip.c:687:13: note: ‘nres1’ was declared here 2023-10-22T13:09:34,727 687 | int nres1; 2023-10-22T13:09:34,728 | ^~~~~ 2023-10-22T13:09:34,729 vendor/easel/esl_msafile_phylip.c:683:20: warning: ‘ncols0’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:34,730 683 | int ncols, ncols0; 2023-10-22T13:09:34,730 | ^~~~~~ 2023-10-22T13:09:34,756 vendor/easel/esl_msafile_clustal.c: In function ‘esl_msafile_clustal_Read’: 2023-10-22T13:09:34,757 vendor/easel/esl_msafile_clustal.c:252:12: warning: ‘block_seq_len’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:34,758 252 | if (seq_len != block_seq_len) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence end is misaligned"); 2023-10-22T13:09:34,759 | ^ 2023-10-22T13:09:34,759 vendor/easel/esl_msafile_clustal.c:203:30: note: ‘block_seq_len’ was declared here 2023-10-22T13:09:34,760 203 | esl_pos_t block_seq_start, block_seq_len; 2023-10-22T13:09:34,761 | ^~~~~~~~~~~~~ 2023-10-22T13:09:34,762 vendor/easel/esl_msafile_clustal.c:251:12: warning: ‘block_seq_start’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:34,763 251 | if (seq_start != block_seq_start) ESL_XFAIL(eslEFORMAT, afp->errmsg, "sequence start is misaligned"); 2023-10-22T13:09:34,764 | ^ 2023-10-22T13:09:34,765 vendor/easel/esl_msafile_clustal.c:203:13: note: ‘block_seq_start’ was declared here 2023-10-22T13:09:34,766 203 | esl_pos_t block_seq_start, block_seq_len; 2023-10-22T13:09:34,767 | ^~~~~~~~~~~~~~~ 2023-10-22T13:09:35,122 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-10-22T13:09:35,123 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_json.o 2023-10-22T13:09:35,291 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-10-22T13:09:35,292 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_paml.o 2023-10-22T13:09:35,633 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-10-22T13:09:35,634 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stopwatch.o 2023-10-22T13:09:35,790 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-10-22T13:09:35,790 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_red_black.o 2023-10-22T13:09:35,838 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-10-22T13:09:35,839 15 | static double stopwatch_getRealTime(void); 2023-10-22T13:09:35,840 | ^~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:36,022 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-10-22T13:09:36,023 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_buffer.o 2023-10-22T13:09:36,359 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-10-22T13:09:36,360 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_graph.o 2023-10-22T13:09:36,835 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2023-10-22T13:09:36,836 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msashuffle.o 2023-10-22T13:09:37,049 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2023-10-22T13:09:37,050 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:37,051 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2023-10-22T13:09:37,052 | ^~ 2023-10-22T13:09:37,851 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2023-10-22T13:09:37,851 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rand64.o 2023-10-22T13:09:37,982 generating build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c 2023-10-22T13:09:37,983 creating build/temp.linux-armv7l-cpython-311/build 2023-10-22T13:09:37,983 creating build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311 2023-10-22T13:09:37,984 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.o 2023-10-22T13:09:38,012 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-10-22T13:09:38,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_histogram.o 2023-10-22T13:09:38,081 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-10-22T13:09:38,082 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stack.o 2023-10-22T13:09:38,221 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-10-22T13:09:38,222 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:38,223 541 | if (rank > h->n) 2023-10-22T13:09:38,224 | ^ 2023-10-22T13:09:38,268 build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-10-22T13:09:38,270 build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.c:1671:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:38,271 1671 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-10-22T13:09:38,272 | ^~ 2023-10-22T13:09:38,638 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-10-22T13:09:38,639 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_composition.o 2023-10-22T13:09:38,893 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2023-10-22T13:09:38,893 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vmx.o 2023-10-22T13:09:38,972 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-10-22T13:09:38,973 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_tree.o 2023-10-22T13:09:39,747 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-10-22T13:09:39,748 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alloc.o 2023-10-22T13:09:39,956 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-10-22T13:09:39,957 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_matrixops.o 2023-10-22T13:09:43,320 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-10-22T13:09:43,320 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cpu.o 2023-10-22T13:09:43,487 generating build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-10-22T13:09:43,487 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rootfinder.o 2023-10-22T13:09:43,818 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-311/libeasel.a build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_lognormal.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-311/vendor/easel/easel.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-311/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_iset.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-311/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/esl_sqio_ascii.o 2023-10-22T13:09:44,074 generating build/temp.linux-armv7l-cpython-311/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmfile.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c 2023-10-22T13:09:44,076 generating build/temp.linux-armv7l-cpython-311/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-10-22T13:09:44,087 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-10-22T13:09:44,087 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback_banded.o from vendor/hmmer/src/generic_fwdback_banded.c 2023-10-22T13:09:44,088 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/evalues.o from vendor/hmmer/src/evalues.c 2023-10-22T13:09:44,089 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src 2023-10-22T13:09:44,089 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_viterbi.o from vendor/hmmer/src/generic_viterbi.c 2023-10-22T13:09:44,090 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src 2023-10-22T13:09:44,091 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src 2023-10-22T13:09:44,091 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/build.o 2023-10-22T13:09:44,092 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_fwdback_banded.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback_banded.o 2023-10-22T13:09:44,092 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/evalues.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/evalues.o 2023-10-22T13:09:44,093 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_viterbi.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_viterbi.o 2023-10-22T13:09:45,009 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_null2.o from vendor/hmmer/src/generic_null2.c 2023-10-22T13:09:45,010 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_null2.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_null2.o 2023-10-22T13:09:45,323 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-10-22T13:09:45,323 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_vtrace.o 2023-10-22T13:09:45,370 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/eweight.o from vendor/hmmer/src/eweight.c 2023-10-22T13:09:45,370 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/eweight.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/eweight.o 2023-10-22T13:09:45,461 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/cachedb.o from vendor/hmmer/src/cachedb.c 2023-10-22T13:09:45,462 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/cachedb.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/cachedb.o 2023-10-22T13:09:46,086 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-10-22T13:09:46,088 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_msv.o 2023-10-22T13:09:46,223 vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Open’: 2023-10-22T13:09:46,224 vendor/hmmer/src/cachedb.c:95:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-10-22T13:09:46,225 95 | if (db_cnt > (sizeof(db_inx)/sizeof(db_inx[0]))) return eslEFORMAT; 2023-10-22T13:09:46,226 | ^ 2023-10-22T13:09:46,230 vendor/hmmer/src/cachedb.c:157:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,231 157 | if (inx >= seq_cnt) { printf("inx: %d\n", inx); return eslEFORMAT; } 2023-10-22T13:09:46,232 | ^~ 2023-10-22T13:09:46,233 vendor/hmmer/src/cachedb.c:158:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,234 158 | if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; } 2023-10-22T13:09:46,235 | ^ 2023-10-22T13:09:46,236 vendor/hmmer/src/cachedb.c:179:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:46,237 179 | if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; } 2023-10-22T13:09:46,238 | ^~ 2023-10-22T13:09:46,239 vendor/hmmer/src/cachedb.c:212:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,240 212 | if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt); return eslEFORMAT; } 2023-10-22T13:09:46,242 | ^~ 2023-10-22T13:09:46,243 vendor/hmmer/src/cachedb.c:222:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,244 222 | for (i = 0 ; i < seq_cnt; ++i) { 2023-10-22T13:09:46,245 | ^ 2023-10-22T13:09:46,246 vendor/hmmer/src/cachedb.c:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,247 230 | for (i = 0 ; i < seq_cnt; ++i) { 2023-10-22T13:09:46,249 | ^ 2023-10-22T13:09:46,251 vendor/hmmer/src/cachedb.c:236:25: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,252 236 | if (db_inx[inx] >= db->count) { printf("sort:: %d %d\n", db_inx[inx], db->count); return eslEFORMAT; } 2023-10-22T13:09:46,253 | ^~ 2023-10-22T13:09:46,254 vendor/hmmer/src/cachedb.c:246:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,255 246 | for (i = 0; i < cache->db_cnt; ++i) { 2023-10-22T13:09:46,256 | ^ 2023-10-22T13:09:46,257 vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Close’: 2023-10-22T13:09:46,258 vendor/hmmer/src/cachedb.c:284:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:46,259 284 | for (i = 0; i < cache->db_cnt; ++i) { 2023-10-22T13:09:46,260 | ^ 2023-10-22T13:09:46,288 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_decoding.o from vendor/hmmer/src/generic_decoding.c 2023-10-22T13:09:46,288 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_decoding.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_decoding.o 2023-10-22T13:09:46,562 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/h2_io.o from vendor/hmmer/src/h2_io.c 2023-10-22T13:09:46,562 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/h2_io.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/h2_io.o 2023-10-22T13:09:46,957 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/cachedb_shard.o from vendor/hmmer/src/cachedb_shard.c 2023-10-22T13:09:46,958 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/cachedb_shard.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/cachedb_shard.o 2023-10-22T13:09:47,300 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_optacc.o from vendor/hmmer/src/generic_optacc.c 2023-10-22T13:09:47,301 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_optacc.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_optacc.o 2023-10-22T13:09:47,351 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-10-22T13:09:47,352 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback.o 2023-10-22T13:09:47,371 vendor/hmmer/src/h2_io.c: In function ‘h2_multiline’: 2023-10-22T13:09:47,372 vendor/hmmer/src/h2_io.c:213:47: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:47,373 213 | if (fwrite(sptr, sizeof(char), n, fp) != n) ESL_EXCEPTION_SYS(eslEWRITE, "h2 profile write failed"); /* using fwrite lets us write fixed # of chars */ 2023-10-22T13:09:47,374 | ^~ 2023-10-22T13:09:47,753 vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_master’: 2023-10-22T13:09:47,754 vendor/hmmer/src/cachedb_shard.c:117:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,755 117 | for (i = 0; i < db_cnt; ++i) { 2023-10-22T13:09:47,756 | ^ 2023-10-22T13:09:47,757 vendor/hmmer/src/cachedb_shard.c:159:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,758 159 | for (i = 0; i < db_cnt; ++i) db_inx[i] = 0; 2023-10-22T13:09:47,758 | ^ 2023-10-22T13:09:47,759 vendor/hmmer/src/cachedb_shard.c:167:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,760 167 | if (inx >= seq_cnt) { printf("inx: %d\n", inx); return eslEFORMAT; } 2023-10-22T13:09:47,761 | ^~ 2023-10-22T13:09:47,762 vendor/hmmer/src/cachedb_shard.c:191:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:47,763 191 | if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db_cnt %d db %d %s\n", inx, db_cnt, db_key, sq->desc); return eslEFORMAT; } 2023-10-22T13:09:47,764 | ^~ 2023-10-22T13:09:47,764 vendor/hmmer/src/cachedb_shard.c:225:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,765 225 | if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt); return eslEFORMAT; } 2023-10-22T13:09:47,766 | ^~ 2023-10-22T13:09:47,767 vendor/hmmer/src/cachedb_shard.c:235:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,768 235 | for (i = 0 ; i < seq_cnt; ++i) { 2023-10-22T13:09:47,769 | ^ 2023-10-22T13:09:47,770 vendor/hmmer/src/cachedb_shard.c:243:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,771 243 | for (i = 0 ; i < seq_cnt; ++i) { 2023-10-22T13:09:47,772 | ^ 2023-10-22T13:09:47,773 vendor/hmmer/src/cachedb_shard.c:259:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,774 259 | for (i = 0; i < cache->db_cnt; ++i) { 2023-10-22T13:09:47,775 | ^ 2023-10-22T13:09:47,776 vendor/hmmer/src/cachedb_shard.c:282:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,777 282 | for (i = 0; i < db_cnt; ++i) { 2023-10-22T13:09:47,778 | ^ 2023-10-22T13:09:47,779 vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Close_master’: 2023-10-22T13:09:47,780 vendor/hmmer/src/cachedb_shard.c:297:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,781 297 | for (i = 0; i < cache->db_cnt; ++i) { 2023-10-22T13:09:47,782 | ^ 2023-10-22T13:09:47,783 vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_shard’: 2023-10-22T13:09:47,784 vendor/hmmer/src/cachedb_shard.c:388:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,785 388 | for (i = 0; i < db_cnt; ++i) { 2023-10-22T13:09:47,786 | ^ 2023-10-22T13:09:47,787 vendor/hmmer/src/cachedb_shard.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,788 398 | for (i = 0; i < db_cnt; i++){ 2023-10-22T13:09:47,789 | ^ 2023-10-22T13:09:47,790 vendor/hmmer/src/cachedb_shard.c:434:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,791 434 | for (i = 0; i < db_cnt; ++i) db_inx[i] = 0; 2023-10-22T13:09:47,792 | ^ 2023-10-22T13:09:47,793 vendor/hmmer/src/cachedb_shard.c:445:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,801 445 | if (inx >= seq_cnt) { printf("inx: %d\n", inx); return eslEFORMAT; } 2023-10-22T13:09:47,802 | ^~ 2023-10-22T13:09:47,803 vendor/hmmer/src/cachedb_shard.c:446:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,804 446 | if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; } 2023-10-22T13:09:47,805 | ^ 2023-10-22T13:09:47,806 vendor/hmmer/src/cachedb_shard.c:463:41: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:47,807 463 | if(db_seq_count[i] % num_shards == my_shard){ //this sequence is part of database i and belongs to this node's shard 2023-10-22T13:09:47,807 | ^~ 2023-10-22T13:09:47,808 vendor/hmmer/src/cachedb_shard.c:475:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:47,809 475 | if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; } 2023-10-22T13:09:47,810 | ^~ 2023-10-22T13:09:47,811 vendor/hmmer/src/cachedb_shard.c:544:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,812 544 | for(i = 0; i < db_cnt; i++){ 2023-10-22T13:09:47,813 | ^ 2023-10-22T13:09:47,814 vendor/hmmer/src/cachedb_shard.c:560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,815 560 | for (i = 0 ; i < seq_cnt; ++i) { 2023-10-22T13:09:47,816 | ^ 2023-10-22T13:09:47,817 vendor/hmmer/src/cachedb_shard.c:568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,818 568 | for (i = 0 ; i < seq_cnt; ++i) { 2023-10-22T13:09:47,819 | ^ 2023-10-22T13:09:47,820 vendor/hmmer/src/cachedb_shard.c:585:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,821 585 | for (i = 0; i < cache->db_cnt; ++i) { 2023-10-22T13:09:47,822 | ^ 2023-10-22T13:09:47,824 vendor/hmmer/src/cachedb_shard.c:615:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:47,825 615 | for (i = 0; i < db_cnt; ++i) { 2023-10-22T13:09:47,826 | ^ 2023-10-22T13:09:47,975 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/heatmap.o from vendor/hmmer/src/heatmap.c 2023-10-22T13:09:47,976 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/heatmap.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/heatmap.o 2023-10-22T13:09:48,284 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmlogo.o from vendor/hmmer/src/hmmlogo.c 2023-10-22T13:09:48,285 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmlogo.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmlogo.o 2023-10-22T13:09:48,812 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback_chk.o from vendor/hmmer/src/generic_fwdback_chk.c 2023-10-22T13:09:48,813 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_fwdback_chk.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback_chk.o 2023-10-22T13:09:49,006 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_stotrace.o from vendor/hmmer/src/generic_stotrace.c 2023-10-22T13:09:49,007 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/generic_stotrace.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_stotrace.o 2023-10-22T13:09:49,245 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/emit.o from vendor/hmmer/src/emit.c 2023-10-22T13:09:49,246 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/emit.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/emit.o 2023-10-22T13:09:49,787 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-10-22T13:09:49,788 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr.o 2023-10-22T13:09:49,867 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-10-22T13:09:49,868 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr_shard.o 2023-10-22T13:09:49,943 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-10-22T13:09:49,943 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmd_search_status.o 2023-10-22T13:09:49,964 vendor/hmmer/src/generic_stotrace.c: In function ‘p7_GStochasticTrace’: 2023-10-22T13:09:49,965 vendor/hmmer/src/generic_stotrace.c:175:62: warning: ‘scur’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:49,966 175 | if ( (scur == p7T_N || scur == p7T_J || scur == p7T_C) && scur == sprv) i--; 2023-10-22T13:09:49,967 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-22T13:09:49,968 vendor/hmmer/src/generic_stotrace.c:57:11: note: ‘scur’ was declared here 2023-10-22T13:09:49,969 57 | int scur, sprv; 2023-10-22T13:09:49,970 | ^~~~ 2023-10-22T13:09:50,234 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-10-22T13:09:50,235 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdutils.o 2023-10-22T13:09:50,307 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-10-22T13:09:50,308 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmer.o 2023-10-22T13:09:50,427 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/mpisupport.o from vendor/hmmer/src/mpisupport.c 2023-10-22T13:09:50,428 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/mpisupport.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/mpisupport.o 2023-10-22T13:09:50,530 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/seqmodel.o from vendor/hmmer/src/seqmodel.c 2023-10-22T13:09:50,531 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/seqmodel.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/seqmodel.o 2023-10-22T13:09:50,845 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-10-22T13:09:50,846 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/errors.o 2023-10-22T13:09:50,938 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr.o from vendor/hmmer/src/hmmdwrkr.c 2023-10-22T13:09:50,939 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmdwrkr.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr.o 2023-10-22T13:09:51,009 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-10-22T13:09:51,010 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr_shard.o 2023-10-22T13:09:51,081 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_builder.o from vendor/hmmer/src/p7_builder.c 2023-10-22T13:09:51,082 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_builder.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_builder.o 2023-10-22T13:09:51,229 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/logsum.o from vendor/hmmer/src/logsum.c 2023-10-22T13:09:51,230 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/logsum.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/logsum.o 2023-10-22T13:09:51,466 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-10-22T13:09:51,467 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/tracealign.o 2023-10-22T13:09:51,677 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-10-22T13:09:51,678 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxb.o 2023-10-22T13:09:52,050 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-10-22T13:09:52,051 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelconfig.o 2023-10-22T13:09:52,945 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxchk.o from vendor/hmmer/src/p7_gmxchk.c 2023-10-22T13:09:52,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_gmxchk.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxchk.o 2023-10-22T13:09:53,319 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-10-22T13:09:53,320 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domain.o 2023-10-22T13:09:53,419 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelstats.o from vendor/hmmer/src/modelstats.c 2023-10-22T13:09:53,420 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/modelstats.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelstats.o 2023-10-22T13:09:54,071 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-10-22T13:09:54,072 vendor/hmmer/src/p7_domain.c:228:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,073 228 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-10-22T13:09:54,073 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,074 vendor/hmmer/src/p7_domain.c:235:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,075 235 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-10-22T13:09:54,076 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,077 vendor/hmmer/src/p7_domain.c:240:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,078 240 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-10-22T13:09:54,079 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,080 vendor/hmmer/src/p7_domain.c:245:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,081 245 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-10-22T13:09:54,082 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,083 vendor/hmmer/src/p7_domain.c:250:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,084 250 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-10-22T13:09:54,085 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,085 vendor/hmmer/src/p7_domain.c:255:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,087 255 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-10-22T13:09:54,089 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,091 vendor/hmmer/src/p7_domain.c:290:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:54,092 290 | if (ser_size != ptr - (*buf + *n)){ 2023-10-22T13:09:54,093 | ^~ 2023-10-22T13:09:54,096 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-10-22T13:09:54,096 vendor/hmmer/src/p7_domain.c:379:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,098 379 | ret_obj->envsc = *((float *) &host_32bit); 2023-10-22T13:09:54,099 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,099 vendor/hmmer/src/p7_domain.c:385:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,100 385 | ret_obj->domcorrection = *((float *) &host_32bit); 2023-10-22T13:09:54,101 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,102 vendor/hmmer/src/p7_domain.c:391:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,104 391 | ret_obj->dombias = *((float *) &host_32bit); 2023-10-22T13:09:54,106 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,107 vendor/hmmer/src/p7_domain.c:397:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,108 397 | ret_obj->oasc = *((float *) &host_32bit); 2023-10-22T13:09:54,108 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,111 vendor/hmmer/src/p7_domain.c:403:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,111 403 | ret_obj->bitscore = *((float *) &host_32bit); 2023-10-22T13:09:54,112 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,113 vendor/hmmer/src/p7_domain.c:409:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,114 409 | ret_obj->lnP = *((double *) &host_64bit); 2023-10-22T13:09:54,116 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,118 vendor/hmmer/src/p7_domain.c:436:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,131 436 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-10-22T13:09:54,132 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,133 vendor/hmmer/src/p7_domain.c:442:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:54,135 442 | if(ptr - (buf + *n) != obj_size){ 2023-10-22T13:09:54,136 | ^~ 2023-10-22T13:09:54,143 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hit.o from vendor/hmmer/src/p7_hit.c 2023-10-22T13:09:54,144 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_hit.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hit.o 2023-10-22T13:09:54,438 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_alidisplay.o from vendor/hmmer/src/p7_alidisplay.c 2023-10-22T13:09:54,439 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_alidisplay.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_alidisplay.o 2023-10-22T13:09:54,581 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmd_search_stats.o from vendor/hmmer/src/p7_hmmd_search_stats.c 2023-10-22T13:09:54,582 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_hmmd_search_stats.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmd_search_stats.o 2023-10-22T13:09:54,619 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domaindef.o from vendor/hmmer/src/p7_domaindef.c 2023-10-22T13:09:54,620 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_domaindef.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domaindef.o 2023-10-22T13:09:54,944 vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Serialize’: 2023-10-22T13:09:54,946 vendor/hmmer/src/p7_hit.c:287:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,947 287 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey))); 2023-10-22T13:09:54,947 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,948 vendor/hmmer/src/p7_hit.c:292:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,949 292 | network_32bit = esl_hton32(*((uint32_t *) &(obj->score))); 2023-10-22T13:09:54,950 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,951 vendor/hmmer/src/p7_hit.c:297:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,952 297 | network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score))); 2023-10-22T13:09:54,952 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,953 vendor/hmmer/src/p7_hit.c:302:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,954 302 | network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score))); 2023-10-22T13:09:54,955 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,956 vendor/hmmer/src/p7_hit.c:307:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,957 307 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-10-22T13:09:54,958 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,958 vendor/hmmer/src/p7_hit.c:312:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,959 312 | network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP))); 2023-10-22T13:09:54,960 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,961 vendor/hmmer/src/p7_hit.c:317:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,962 317 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP))); 2023-10-22T13:09:54,963 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,964 vendor/hmmer/src/p7_hit.c:322:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,964 322 | network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected))); 2023-10-22T13:09:54,965 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,966 vendor/hmmer/src/p7_hit.c:403:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:54,967 403 | if(ptr -(*buf + *n) != ser_size){ 2023-10-22T13:09:54,968 | ^~ 2023-10-22T13:09:54,969 vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Deserialize’: 2023-10-22T13:09:54,969 vendor/hmmer/src/p7_hit.c:471:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,970 471 | ret_obj->sortkey = *((double *) &host_64bit); 2023-10-22T13:09:54,971 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,972 vendor/hmmer/src/p7_hit.c:477:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,972 477 | ret_obj->score = *((float *) &host_32bit); 2023-10-22T13:09:54,973 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,974 vendor/hmmer/src/p7_hit.c:483:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,975 483 | ret_obj->pre_score = *((float *) &host_32bit); 2023-10-22T13:09:54,976 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,976 vendor/hmmer/src/p7_hit.c:489:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,977 489 | ret_obj->sum_score = *((float *) &host_32bit); 2023-10-22T13:09:54,978 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,979 vendor/hmmer/src/p7_hit.c:495:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,980 495 | ret_obj->lnP = *((double *) &host_64bit); 2023-10-22T13:09:54,980 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,981 vendor/hmmer/src/p7_hit.c:501:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,982 501 | ret_obj->pre_lnP = *((double *) &host_64bit); 2023-10-22T13:09:54,983 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,984 vendor/hmmer/src/p7_hit.c:507:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,984 507 | ret_obj->sum_lnP = *((double *) &host_64bit); 2023-10-22T13:09:54,985 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,986 vendor/hmmer/src/p7_hit.c:513:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:54,987 513 | ret_obj->nexpected = *((float *) &host_32bit); 2023-10-22T13:09:54,988 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:54,989 vendor/hmmer/src/p7_hit.c:621:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:54,990 621 | if((ptr - (buf + *n)) !=obj_size){ 2023-10-22T13:09:54,991 | ^~ 2023-10-22T13:09:55,218 vendor/hmmer/src/p7_alidisplay.c: In function ‘p7_alidisplay_Deserialize’: 2023-10-22T13:09:55,219 vendor/hmmer/src/p7_alidisplay.c:725:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:55,220 725 | if(ret_obj->memsize < (obj_size - SER_BASE_SIZE)){ // ret_obj doesn't have enough space for this P7_ALIDISPLAY 2023-10-22T13:09:55,221 | ^ 2023-10-22T13:09:55,224 vendor/hmmer/src/p7_alidisplay.c:885:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:55,225 885 | if(mem_ptr - ret_obj->mem != (obj_size - SER_BASE_SIZE)){ 2023-10-22T13:09:55,226 | ^~ 2023-10-22T13:09:55,295 vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Serialize’: 2023-10-22T13:09:55,296 vendor/hmmer/src/p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,298 89 | network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed))); // ow, this hurts, but is probably the best way to get the 2023-10-22T13:09:55,299 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,299 vendor/hmmer/src/p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,300 97 | network_64bit = esl_hton64(*((uint64_t *) &(obj->user))); 2023-10-22T13:09:55,301 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,302 vendor/hmmer/src/p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,303 103 | network_64bit = esl_hton64(*((uint64_t *) &(obj->sys))); 2023-10-22T13:09:55,304 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,304 vendor/hmmer/src/p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,305 109 | network_64bit = esl_hton64(*((uint64_t *) &(obj->Z))); 2023-10-22T13:09:55,306 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,307 vendor/hmmer/src/p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,309 115 | network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ))); 2023-10-22T13:09:55,311 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,312 vendor/hmmer/src/p7_hmmd_search_stats.c:205:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:55,313 205 | for (i = 0; i < obj->nhits; i++) 2023-10-22T13:09:55,314 | ^ 2023-10-22T13:09:55,314 vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Deserialize’: 2023-10-22T13:09:55,315 vendor/hmmer/src/p7_hmmd_search_stats.c:258:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,316 258 | ret_obj->elapsed = *((double *) &host_64bit); 2023-10-22T13:09:55,317 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,318 vendor/hmmer/src/p7_hmmd_search_stats.c:264:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,319 264 | ret_obj->user = *((double *) &host_64bit); 2023-10-22T13:09:55,321 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,322 vendor/hmmer/src/p7_hmmd_search_stats.c:270:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,323 270 | ret_obj->sys = *((double *) &host_64bit); 2023-10-22T13:09:55,324 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,325 vendor/hmmer/src/p7_hmmd_search_stats.c:276:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,325 276 | ret_obj->Z = *((double *) &host_64bit); 2023-10-22T13:09:55,326 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,327 vendor/hmmer/src/p7_hmmd_search_stats.c:282:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-10-22T13:09:55,328 282 | ret_obj->domZ = *((double *) &host_64bit); 2023-10-22T13:09:55,329 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,330 vendor/hmmer/src/p7_hmmd_search_stats.c:380:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:09:55,331 380 | for (i = 1; i < ret_obj->nhits; i++) 2023-10-22T13:09:55,332 | ^ 2023-10-22T13:09:55,624 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmwindow.o from vendor/hmmer/src/p7_hmmwindow.c 2023-10-22T13:09:55,625 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_hmmwindow.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmwindow.o 2023-10-22T13:09:55,688 vendor/hmmer/src/p7_domaindef.c: In function ‘rescore_isolated_domain’: 2023-10-22T13:09:55,689 vendor/hmmer/src/p7_domaindef.c:932:5: warning: ‘orig_L’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:55,690 932 | p7_oprofile_ReconfigRestLength(om, orig_L); 2023-10-22T13:09:55,691 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:55,692 vendor/hmmer/src/p7_domaindef.c:827:18: note: ‘orig_L’ was declared here 2023-10-22T13:09:55,692 827 | int orig_L; 2023-10-22T13:09:55,693 | ^~~~~~ 2023-10-22T13:09:55,809 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmm.o from vendor/hmmer/src/p7_hmm.c 2023-10-22T13:09:55,811 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_hmm.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmm.o 2023-10-22T13:09:56,520 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_pipeline.o from vendor/hmmer/src/p7_pipeline.c 2023-10-22T13:09:56,521 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_pipeline.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_pipeline.o 2023-10-22T13:09:56,632 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gbands.o from vendor/hmmer/src/p7_gbands.c 2023-10-22T13:09:56,633 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_gbands.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gbands.o 2023-10-22T13:09:56,707 vendor/hmmer/src/p7_hmm.c: In function ‘p7_hmm_Validate’: 2023-10-22T13:09:56,709 vendor/hmmer/src/p7_hmm.c:1282:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:56,710 1282 | if (hmm->flags & p7H_RF) { if (hmm->rf == NULL || strlen(hmm->rf) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_RF flag up, but rf string is invalid"); } 2023-10-22T13:09:56,711 | ^~ 2023-10-22T13:09:56,713 vendor/hmmer/src/p7_hmm.c:1285:86: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:56,714 1285 | if (hmm->flags & p7H_MMASK) { if (hmm->mm == NULL || strlen(hmm->mm) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_MMASK flag up, but mm string is invalid"); } 2023-10-22T13:09:56,715 | ^~ 2023-10-22T13:09:56,717 vendor/hmmer/src/p7_hmm.c:1288:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:56,717 1288 | if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CONS flag up, but consensus string is invalid"); } 2023-10-22T13:09:56,718 | ^~ 2023-10-22T13:09:56,720 vendor/hmmer/src/p7_hmm.c:1291:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:56,721 1291 | if (hmm->flags & p7H_CS) { if (hmm->cs == NULL || strlen(hmm->cs) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CS flag up, but cs string is invalid"); } 2023-10-22T13:09:56,722 | ^~ 2023-10-22T13:09:56,724 vendor/hmmer/src/p7_hmm.c:1294:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:56,725 1294 | if (hmm->flags & p7H_CA) { if (hmm->ca == NULL || strlen(hmm->ca) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CA flag up, but ca string is invalid"); } 2023-10-22T13:09:56,726 | ^~ 2023-10-22T13:09:57,116 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmx.o from vendor/hmmer/src/p7_gmx.c 2023-10-22T13:09:57,117 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_gmx.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmx.o 2023-10-22T13:09:57,480 In file included from vendor/hmmer/src/p7_pipeline.c:15: 2023-10-22T13:09:57,481 vendor/hmmer/src/p7_pipeline.c: In function ‘p7_pli_postSSV_LongTarget’: 2023-10-22T13:09:57,482 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:57,483 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:09:57,484 | ^ 2023-10-22T13:09:57,485 vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:09:57,486 1407 | p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len ); 2023-10-22T13:09:57,488 | ^~~~~~~ 2023-10-22T13:09:57,489 vendor/easel/easel.h:431:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:57,489 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:09:57,490 | ^~~ 2023-10-22T13:09:57,491 vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:09:57,492 1407 | p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len ); 2023-10-22T13:09:57,493 | ^~~~~~~ 2023-10-22T13:09:57,494 vendor/hmmer/src/p7_pipeline.c:1408:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:57,496 1408 | } while (new_len > max_window_len); 2023-10-22T13:09:57,497 | ^ 2023-10-22T13:09:57,501 vendor/hmmer/src/p7_pipeline.c: In function ‘p7_Pipeline_LongTarget’: 2023-10-22T13:09:57,502 vendor/hmmer/src/p7_pipeline.c:1655:46: warning: operand of ‘?:’ changes signedness from ‘int64_t’ {aka ‘long long int’} to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:57,503 1655 | (fmf != NULL ? seq_start : sq->start), 2023-10-22T13:09:57,504 | ^~~~~~~~~ 2023-10-22T13:09:57,505 vendor/hmmer/src/p7_pipeline.c:1660:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:57,506 1660 | (fmf != NULL ? seq_data.length : -1), 2023-10-22T13:09:57,507 | ^~ 2023-10-22T13:09:58,019 In file included from vendor/hmmer/src/hmmer.h:42, 2023-10-22T13:09:58,020 from vendor/hmmer/src/p7_gmx.c:11: 2023-10-22T13:09:58,021 vendor/hmmer/src/p7_gmx.c: In function ‘p7_gmx_GrowTo’: 2023-10-22T13:09:58,021 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:09:58,022 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:09:58,023 | ^ 2023-10-22T13:09:58,024 vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:09:58,025 144 | gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR); 2023-10-22T13:09:58,026 | ^~~~~~~ 2023-10-22T13:09:58,027 vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:09:58,028 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:09:58,029 | ^~~ 2023-10-22T13:09:58,030 vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:09:58,031 144 | gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR); 2023-10-22T13:09:58,032 | ^~~~~~~ 2023-10-22T13:09:58,333 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_bg.o from vendor/hmmer/src/p7_bg.c 2023-10-22T13:09:58,334 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_bg.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_bg.o 2023-10-22T13:09:58,518 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-10-22T13:09:58,519 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmcache.o 2023-10-22T13:09:58,617 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_spensemble.o from vendor/hmmer/src/p7_spensemble.c 2023-10-22T13:09:58,619 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_spensemble.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_spensemble.o 2023-10-22T13:09:59,267 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-10-22T13:09:59,269 vendor/hmmer/src/p7_hmmcache.c:111:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:59,270 111 | for (i = 0; i < cache->n; i++) 2023-10-22T13:09:59,271 | ^ 2023-10-22T13:09:59,273 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-10-22T13:09:59,275 vendor/hmmer/src/p7_hmmcache.c:139:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:59,276 139 | for (i = 0; i < cache->n; i++) 2023-10-22T13:09:59,277 | ^ 2023-10-22T13:09:59,277 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-10-22T13:09:59,278 vendor/hmmer/src/p7_hmmcache.c:162:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:09:59,279 162 | for (i = 0; i < cache->n; i++) 2023-10-22T13:09:59,280 | ^ 2023-10-22T13:09:59,503 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_alphabet.o from vendor/hmmer/src/fm_alphabet.c 2023-10-22T13:09:59,504 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/fm_alphabet.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_alphabet.o 2023-10-22T13:09:59,656 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/p7_omx.o from vendor/hmmer/src/impl_neon/p7_omx.c 2023-10-22T13:09:59,657 creating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon 2023-10-22T13:09:59,658 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/p7_omx.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/p7_omx.o 2023-10-22T13:09:59,811 vendor/hmmer/src/p7_spensemble.c: In function ‘p7_spensemble_Cluster’: 2023-10-22T13:09:59,812 vendor/hmmer/src/p7_spensemble.c:294:25: warning: ‘mmax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,813 294 | int imax, jmax, kmax, mmax; 2023-10-22T13:09:59,814 | ^~~~ 2023-10-22T13:09:59,815 vendor/hmmer/src/p7_spensemble.c:364:10: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,816 364 | if (best_k > kmax) best_k = kmin + esl_vec_IArgMax(sp->epc, kmax-kmin+1); 2023-10-22T13:09:59,817 | ^ 2023-10-22T13:09:59,818 vendor/hmmer/src/p7_spensemble.c:294:19: note: ‘kmax’ was declared here 2023-10-22T13:09:59,819 294 | int imax, jmax, kmax, mmax; 2023-10-22T13:09:59,819 | ^~~~ 2023-10-22T13:09:59,820 vendor/hmmer/src/p7_spensemble.c:294:13: warning: ‘jmax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,822 294 | int imax, jmax, kmax, mmax; 2023-10-22T13:09:59,823 | ^~~~ 2023-10-22T13:09:59,824 vendor/hmmer/src/p7_spensemble.c:358:10: warning: ‘imax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,825 358 | if (best_i > imax) best_i = imin + esl_vec_IArgMax(sp->epc, imax-imin+1); 2023-10-22T13:09:59,826 | ^ 2023-10-22T13:09:59,827 vendor/hmmer/src/p7_spensemble.c:294:7: note: ‘imax’ was declared here 2023-10-22T13:09:59,828 294 | int imax, jmax, kmax, mmax; 2023-10-22T13:09:59,828 | ^~~~ 2023-10-22T13:09:59,829 vendor/hmmer/src/p7_spensemble.c:376:10: warning: ‘mmin’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,830 376 | if (best_m < mmin) best_m = mmin + esl_vec_IArgMax(sp->epc, mmax-mmin+1); 2023-10-22T13:09:59,831 | ^ 2023-10-22T13:09:59,831 vendor/hmmer/src/p7_spensemble.c:293:25: note: ‘mmin’ was declared here 2023-10-22T13:09:59,832 293 | int imin, jmin, kmin, mmin; 2023-10-22T13:09:59,833 | ^~~~ 2023-10-22T13:09:59,834 vendor/hmmer/src/p7_spensemble.c:364:33: warning: ‘kmin’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,834 364 | if (best_k > kmax) best_k = kmin + esl_vec_IArgMax(sp->epc, kmax-kmin+1); 2023-10-22T13:09:59,835 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:09:59,836 vendor/hmmer/src/p7_spensemble.c:293:19: note: ‘kmin’ was declared here 2023-10-22T13:09:59,837 293 | int imin, jmin, kmin, mmin; 2023-10-22T13:09:59,838 | ^~~~ 2023-10-22T13:09:59,839 vendor/hmmer/src/p7_spensemble.c:370:10: warning: ‘jmin’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:09:59,840 370 | if (best_j < jmin) best_j = jmin + esl_vec_IArgMax(sp->epc, jmax-jmin+1); 2023-10-22T13:09:59,840 | ^ 2023-10-22T13:09:59,841 vendor/hmmer/src/p7_spensemble.c:293:13: note: ‘jmin’ was declared here 2023-10-22T13:09:59,842 293 | int imin, jmin, kmin, mmin; 2023-10-22T13:09:59,843 | ^~~~ 2023-10-22T13:10:00,198 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-10-22T13:10:00,198 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_prior.o 2023-10-22T13:10:00,222 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_tophits.o from vendor/hmmer/src/p7_tophits.c 2023-10-22T13:10:00,223 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_tophits.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_tophits.o 2023-10-22T13:10:00,493 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-10-22T13:10:00,494 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_general.o 2023-10-22T13:10:00,959 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Clone’: 2023-10-22T13:10:00,961 vendor/hmmer/src/p7_tophits.c:92:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,962 92 | for (i = 0; i < h2->N; i++) { 2023-10-22T13:10:00,964 | ^ 2023-10-22T13:10:00,966 vendor/hmmer/src/p7_tophits.c:100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,968 100 | for (i = 0; i < h2->N; i++) { 2023-10-22T13:10:00,969 | ^ 2023-10-22T13:10:00,971 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Grow’: 2023-10-22T13:10:00,972 vendor/hmmer/src/p7_tophits.c:143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,973 143 | for (i = 0; i < h->N; i++) 2023-10-22T13:10:00,974 | ^ 2023-10-22T13:10:00,981 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySortkey’: 2023-10-22T13:10:00,982 vendor/hmmer/src/p7_tophits.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,983 398 | for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i; 2023-10-22T13:10:00,983 | ^ 2023-10-22T13:10:00,984 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySeqidxAndAlipos’: 2023-10-22T13:10:00,985 vendor/hmmer/src/p7_tophits.c:431:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,986 431 | for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i; 2023-10-22T13:10:00,987 | ^ 2023-10-22T13:10:00,988 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortByModelnameAndAlipos’: 2023-10-22T13:10:00,989 vendor/hmmer/src/p7_tophits.c:452:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,990 452 | for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i; 2023-10-22T13:10:00,991 | ^ 2023-10-22T13:10:00,993 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Merge’: 2023-10-22T13:10:00,995 vendor/hmmer/src/p7_tophits.c:496:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,995 496 | for (i = 0; i < h1->N; i++) 2023-10-22T13:10:00,996 | ^ 2023-10-22T13:10:00,997 vendor/hmmer/src/p7_tophits.c:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:00,998 504 | for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++) 2023-10-22T13:10:00,999 | ^ 2023-10-22T13:10:01,000 vendor/hmmer/src/p7_tophits.c:504:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,001 504 | for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++) 2023-10-22T13:10:01,002 | ^ 2023-10-22T13:10:01,003 vendor/hmmer/src/p7_tophits.c:506:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,004 506 | while (i < h1->N) new_hit[k++] = h1->hit[i++]; 2023-10-22T13:10:01,005 | ^ 2023-10-22T13:10:01,006 vendor/hmmer/src/p7_tophits.c:507:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,007 507 | while (j < h2->N) new_hit[k++] = new2 + (h2->hit[j++] - h2->unsrt); 2023-10-22T13:10:01,008 | ^ 2023-10-22T13:10:01,009 vendor/hmmer/src/p7_tophits.c:511:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,011 511 | for (i = 0; i < h2->N; i++) 2023-10-22T13:10:01,012 | ^ 2023-10-22T13:10:01,013 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxPositionLength’: 2023-10-22T13:10:01,014 vendor/hmmer/src/p7_tophits.c:559:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,015 559 | for (i = 0; i < h->N; i++) { 2023-10-22T13:10:01,016 | ^ 2023-10-22T13:10:01,017 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxNameLength’: 2023-10-22T13:10:01,017 vendor/hmmer/src/p7_tophits.c:589:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,018 589 | for (max = 0, i = 0; i < h->N; i++) 2023-10-22T13:10:01,019 | ^ 2023-10-22T13:10:01,020 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxAccessionLength’: 2023-10-22T13:10:01,021 vendor/hmmer/src/p7_tophits.c:608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,022 608 | for (max = 0, i = 0; i < h->N; i++) 2023-10-22T13:10:01,023 | ^ 2023-10-22T13:10:01,024 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxShownLength’: 2023-10-22T13:10:01,024 vendor/hmmer/src/p7_tophits.c:630:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,025 630 | for (max = 0, i = 0; i < h->N; i++) 2023-10-22T13:10:01,026 | ^ 2023-10-22T13:10:01,027 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Reuse’: 2023-10-22T13:10:01,028 vendor/hmmer/src/p7_tophits.c:663:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,030 663 | for (i = 0; i < h->N; i++) 2023-10-22T13:10:01,031 | ^ 2023-10-22T13:10:01,032 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Destroy’: 2023-10-22T13:10:01,033 vendor/hmmer/src/p7_tophits.c:693:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,034 693 | for (i = 0; i < h->N; i++) 2023-10-22T13:10:01,035 | ^ 2023-10-22T13:10:01,037 vendor/hmmer/src/p7_tophits.c: In function ‘workaround_bug_h74’: 2023-10-22T13:10:01,038 vendor/hmmer/src/p7_tophits.c:762:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,039 762 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,040 | ^ 2023-10-22T13:10:01,042 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_ComputeNhmmerEvalues’: 2023-10-22T13:10:01,043 vendor/hmmer/src/p7_tophits.c:800:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,044 800 | for (i = 0; i < th->N ; i++) 2023-10-22T13:10:01,045 | ^ 2023-10-22T13:10:01,046 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_RemoveDuplicates’: 2023-10-22T13:10:01,047 vendor/hmmer/src/p7_tophits.c:836:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,048 836 | for (i = 1; i < th->N; i++) 2023-10-22T13:10:01,049 | ^ 2023-10-22T13:10:01,053 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Threshold’: 2023-10-22T13:10:01,054 vendor/hmmer/src/p7_tophits.c:935:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,055 935 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,056 | ^ 2023-10-22T13:10:01,058 vendor/hmmer/src/p7_tophits.c:956:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,059 956 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,060 | ^ 2023-10-22T13:10:01,062 vendor/hmmer/src/p7_tophits.c:974:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,063 974 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,064 | ^ 2023-10-22T13:10:01,066 vendor/hmmer/src/p7_tophits.c:991:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,067 991 | for (h = 0; h < th->N; h++) { 2023-10-22T13:10:01,068 | ^ 2023-10-22T13:10:01,070 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_CompareRanking’: 2023-10-22T13:10:01,071 vendor/hmmer/src/p7_tophits.c:1069:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,072 1069 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,073 | ^ 2023-10-22T13:10:01,075 vendor/hmmer/src/p7_tophits.c:1085:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,076 1085 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,077 | ^ 2023-10-22T13:10:01,084 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’: 2023-10-22T13:10:01,086 vendor/hmmer/src/p7_tophits.c:1173:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,087 1173 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,088 | ^ 2023-10-22T13:10:01,094 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Domains’: 2023-10-22T13:10:01,096 vendor/hmmer/src/p7_tophits.c:1289:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,097 1289 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,098 | ^ 2023-10-22T13:10:01,116 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Alignment’: 2023-10-22T13:10:01,118 vendor/hmmer/src/p7_tophits.c:1528:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,119 1528 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,120 | ^ 2023-10-22T13:10:01,125 vendor/hmmer/src/p7_tophits.c:1554:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,126 1554 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,127 | ^ 2023-10-22T13:10:01,135 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularTargets’: 2023-10-22T13:10:01,137 vendor/hmmer/src/p7_tophits.c:1643:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,138 1643 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,139 | ^ 2023-10-22T13:10:01,147 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularDomains’: 2023-10-22T13:10:01,149 vendor/hmmer/src/p7_tophits.c:1736:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,150 1736 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,151 | ^ 2023-10-22T13:10:01,158 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularXfam’: 2023-10-22T13:10:01,160 vendor/hmmer/src/p7_tophits.c:1838:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,161 1838 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,162 | ^ 2023-10-22T13:10:01,169 vendor/hmmer/src/p7_tophits.c:1872:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,170 1872 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,171 | ^ 2023-10-22T13:10:01,175 vendor/hmmer/src/p7_tophits.c:1893:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,176 1893 | for (h = 0; h < th->N; h++) 2023-10-22T13:10:01,177 | ^ 2023-10-22T13:10:01,183 vendor/hmmer/src/p7_tophits.c:1927:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,184 1927 | for (h = 0; h < domHitlist->N; h++) 2023-10-22T13:10:01,185 | ^ 2023-10-22T13:10:01,187 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_AliScores’: 2023-10-22T13:10:01,189 vendor/hmmer/src/p7_tophits.c:1980:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,191 1980 | for (h = 0; h < th->N; h++) { 2023-10-22T13:10:01,192 | ^ 2023-10-22T13:10:01,296 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-10-22T13:10:01,297 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,298 292 | if (ranges[lo].lower > end) return -1; 2023-10-22T13:10:01,299 | ^ 2023-10-22T13:10:01,300 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,301 293 | if (ranges[hi].upper < start) return -1; 2023-10-22T13:10:01,302 | ^ 2023-10-22T13:10:01,303 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,304 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-10-22T13:10:01,304 | ^ 2023-10-22T13:10:01,305 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,306 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-10-22T13:10:01,307 | ^~ 2023-10-22T13:10:01,308 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,308 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-10-22T13:10:01,309 | ^~ 2023-10-22T13:10:01,310 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,311 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-10-22T13:10:01,312 | ^~ 2023-10-22T13:10:01,313 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,314 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-10-22T13:10:01,314 | ^~ 2023-10-22T13:10:01,315 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-10-22T13:10:01,316 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,317 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-10-22T13:10:01,318 | ^~ 2023-10-22T13:10:01,319 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,319 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-10-22T13:10:01,320 | ^~ 2023-10-22T13:10:01,321 In file included from vendor/hmmer/src/fm_general.c:12: 2023-10-22T13:10:01,322 vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,323 432 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-10-22T13:10:01,324 | ^ 2023-10-22T13:10:01,325 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-10-22T13:10:01,326 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-10-22T13:10:01,327 | ^~~~~~~ 2023-10-22T13:10:01,328 vendor/easel/easel.h:432:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:10:01,329 432 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-10-22T13:10:01,329 | ^~~ 2023-10-22T13:10:01,330 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-10-22T13:10:01,331 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-10-22T13:10:01,332 | ^~~~~~~ 2023-10-22T13:10:01,333 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,334 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:10:01,335 | ^ 2023-10-22T13:10:01,336 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:10:01,337 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-10-22T13:10:01,351 | ^~~~~~~ 2023-10-22T13:10:01,352 vendor/easel/easel.h:431:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-10-22T13:10:01,353 431 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-10-22T13:10:01,354 | ^~~ 2023-10-22T13:10:01,354 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-10-22T13:10:01,355 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-10-22T13:10:01,356 | ^~~~~~~ 2023-10-22T13:10:01,357 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,358 353 | for (j= start; j<=end; j++) 2023-10-22T13:10:01,359 | ^~ 2023-10-22T13:10:01,360 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-10-22T13:10:01,361 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-10-22T13:10:01,361 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-10-22T13:10:01,362 | ^~ 2023-10-22T13:10:01,363 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-10-22T13:10:01,365 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-10-22T13:10:01,366 | ^~ 2023-10-22T13:10:01,367 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-10-22T13:10:01,368 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,368 620 | for (i=0; iseq_count; i++) { 2023-10-22T13:10:01,369 | ^ 2023-10-22T13:10:01,370 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,371 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-10-22T13:10:01,372 | ^~ 2023-10-22T13:10:01,373 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,374 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-10-22T13:10:01,375 | ^~ 2023-10-22T13:10:01,376 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,377 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-10-22T13:10:01,378 | ^~ 2023-10-22T13:10:01,379 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:01,380 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-10-22T13:10:01,381 | ^~ 2023-10-22T13:10:01,381 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,382 651 | for (i=0; iambig_list->count; i++) { 2023-10-22T13:10:01,383 | ^ 2023-10-22T13:10:01,384 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,385 663 | for (i=0; iseq_count; i++) 2023-10-22T13:10:01,386 | ^ 2023-10-22T13:10:01,386 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-10-22T13:10:01,387 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:01,388 727 | for (i=0; iseq_count; i++) { 2023-10-22T13:10:01,401 | ^ 2023-10-22T13:10:01,443 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_profile.o from vendor/hmmer/src/p7_profile.c 2023-10-22T13:10:01,444 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_profile.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_profile.o 2023-10-22T13:10:01,823 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/io.o from vendor/hmmer/src/impl_neon/io.c 2023-10-22T13:10:01,823 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/io.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/io.o 2023-10-22T13:10:02,455 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_sse.o from vendor/hmmer/src/fm_sse.c 2023-10-22T13:10:02,456 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/fm_sse.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_sse.o 2023-10-22T13:10:02,668 vendor/hmmer/src/impl_neon/io.c: In function ‘p7_oprofile_Write’: 2023-10-22T13:10:02,669 vendor/hmmer/src/impl_neon/io.c:100:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,670 100 | if (fwrite((char *) om->name, sizeof(char), n+1, ffp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,671 | ^~ 2023-10-22T13:10:02,672 vendor/hmmer/src/impl_neon/io.c:110:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,673 110 | if (fwrite( (char *) om->sbv[x], sizeof(uint8x16_t), Q16x, ffp) != Q16x) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,674 | ^~ 2023-10-22T13:10:02,675 vendor/hmmer/src/impl_neon/io.c:113:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,676 113 | if (fwrite( (char *) om->rbv[x], sizeof(uint8x16_t), Q16, ffp) != Q16) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,677 | ^~ 2023-10-22T13:10:02,678 vendor/hmmer/src/impl_neon/io.c:125:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,678 125 | if (fwrite((char *) om->name, sizeof(char), n+1, pfp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,679 | ^~ 2023-10-22T13:10:02,680 vendor/hmmer/src/impl_neon/io.c:133:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,681 133 | if (fwrite((char *) om->acc, sizeof(char), n+1, pfp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,682 | ^~ 2023-10-22T13:10:02,683 vendor/hmmer/src/impl_neon/io.c:142:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,684 142 | if (fwrite((char *) om->desc, sizeof(char), n+1, pfp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,685 | ^~ 2023-10-22T13:10:02,686 vendor/hmmer/src/impl_neon/io.c:145:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,687 145 | if (fwrite((char *) om->rf, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,688 | ^~ 2023-10-22T13:10:02,689 vendor/hmmer/src/impl_neon/io.c:146:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,690 146 | if (fwrite((char *) om->mm, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,691 | ^~ 2023-10-22T13:10:02,691 vendor/hmmer/src/impl_neon/io.c:147:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,692 147 | if (fwrite((char *) om->cs, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,693 | ^~ 2023-10-22T13:10:02,694 vendor/hmmer/src/impl_neon/io.c:148:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,695 148 | if (fwrite((char *) om->consensus, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,697 | ^~ 2023-10-22T13:10:02,697 vendor/hmmer/src/impl_neon/io.c:151:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,701 151 | if (fwrite((char *) om->twv, sizeof(int16x8_t), 8*Q8, pfp) != 8*Q8) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,702 | ^~ 2023-10-22T13:10:02,702 vendor/hmmer/src/impl_neon/io.c:153:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,703 153 | if (fwrite( (char *) om->rwv[x], sizeof(int16x8_t), Q8, pfp) != Q8) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,704 | ^~ 2023-10-22T13:10:02,705 vendor/hmmer/src/impl_neon/io.c:162:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,706 162 | if (fwrite((char *) om->tfv, sizeof(float32x4_t), 8*Q4, pfp) != 8*Q4) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,707 | ^~ 2023-10-22T13:10:02,710 vendor/hmmer/src/impl_neon/io.c:164:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:02,710 164 | if (fwrite( (char *) om->rfv[x], sizeof(float32x4_t), Q4, pfp) != Q4) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-10-22T13:10:02,711 | ^~ 2023-10-22T13:10:03,000 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’: 2023-10-22T13:10:03,002 vendor/hmmer/src/p7_tophits.c:1200:19: warning: ‘posw’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:10:03,002 1200 | if (fprintf(ofp, "%c %9.2g %6.1f %5.1f %-*s %*" PRId64 " %*" PRId64 "", 2023-10-22T13:10:03,003 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,004 1201 | newness, 2023-10-22T13:10:03,005 | ~~~~~~~~ 2023-10-22T13:10:03,006 1202 | exp(th->hit[h]->lnP), // * pli->Z, 2023-10-22T13:10:03,007 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,008 1203 | th->hit[h]->score, 2023-10-22T13:10:03,009 | ~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,010 1204 | eslCONST_LOG2R * th->hit[h]->dcl[d].dombias, // an nhmmer hit is really a domain, so this is the hit's bias correction 2023-10-22T13:10:03,010 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,011 1205 | namew, showname, 2023-10-22T13:10:03,012 | ~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,013 1206 | posw, th->hit[h]->dcl[d].iali, 2023-10-22T13:10:03,014 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,015 1207 | posw, th->hit[h]->dcl[d].jali) < 0) 2023-10-22T13:10:03,016 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:03,017 vendor/hmmer/src/p7_tophits.c:1126:10: note: ‘posw’ was declared here 2023-10-22T13:10:03,017 1126 | int posw; 2023-10-22T13:10:03,018 | ^~~~ 2023-10-22T13:10:03,035 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/msvfilter.o from vendor/hmmer/src/impl_neon/msvfilter.c 2023-10-22T13:10:03,036 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/msvfilter.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/msvfilter.o 2023-10-22T13:10:03,372 vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCount’: 2023-10-22T13:10:03,373 vendor/hmmer/src/fm_sse.c:201:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:03,374 201 | if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom 2023-10-22T13:10:03,375 | ^~ 2023-10-22T13:10:03,377 vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCountLT’: 2023-10-22T13:10:03,378 vendor/hmmer/src/fm_sse.c:389:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:03,379 389 | if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom 2023-10-22T13:10:03,379 | ^~ 2023-10-22T13:10:03,381 vendor/hmmer/src/fm_sse.c:404:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:03,382 404 | } else if ( b_pos != sb_pos * (meta->freq_cnt_sb / meta->freq_cnt_b)) { 2023-10-22T13:10:03,383 | ^~ 2023-10-22T13:10:03,554 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_ssv.o from vendor/hmmer/src/fm_ssv.c 2023-10-22T13:10:03,554 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/fm_ssv.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_ssv.o 2023-10-22T13:10:04,145 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/fwdback.o from vendor/hmmer/src/impl_neon/fwdback.c 2023-10-22T13:10:04,146 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/fwdback.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/fwdback.o 2023-10-22T13:10:04,424 vendor/hmmer/src/fm_ssv.c: In function ‘FM_mergeSeeds’: 2023-10-22T13:10:04,425 vendor/hmmer/src/fm_ssv.c:70:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:04,426 70 | && ( next.n - next.k) == curr_diagval //overlapping diagonals will share the same value of (n - k) 2023-10-22T13:10:04,427 | ^~ 2023-10-22T13:10:04,428 vendor/hmmer/src/fm_ssv.c:71:35: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:04,429 71 | && next.n + next.length < curr_n + curr_len + ssv_length //overlapping, or close to it 2023-10-22T13:10:04,430 | ^ 2023-10-22T13:10:04,430 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/decoding.o from vendor/hmmer/src/impl_neon/decoding.c 2023-10-22T13:10:04,431 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/decoding.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/decoding.o 2023-10-22T13:10:04,432 vendor/hmmer/src/fm_ssv.c: In function ‘FM_backtrackSeed’: 2023-10-22T13:10:04,433 vendor/hmmer/src/fm_ssv.c:134:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:04,434 134 | while ( j != fmf->term_loc && (j % fm_cfg->meta->freq_SA)) { //go until we hit a position in the full SA that was sampled during FM index construction 2023-10-22T13:10:04,435 | ^~ 2023-10-22T13:10:04,435 vendor/hmmer/src/fm_ssv.c:141:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:10:04,436 141 | return len + (j==fmf->term_loc ? 0 : fmf->SA[ j / fm_cfg->meta->freq_SA ]) ; // len is how many backward steps we had to take to find a sampled SA position 2023-10-22T13:10:04,437 | ^~ 2023-10-22T13:10:04,450 vendor/hmmer/src/fm_ssv.c: In function ‘FM_extendSeed’: 2023-10-22T13:10:04,451 vendor/hmmer/src/fm_ssv.c:664:18: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:04,452 664 | if (target_end > fm->N-2) { 2023-10-22T13:10:04,453 | ^ 2023-10-22T13:10:04,454 vendor/hmmer/src/fm_ssv.c:678:14: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-10-22T13:10:04,455 678 | for ( ; k <= model_end; k++, n++) { 2023-10-22T13:10:04,456 | ^~ 2023-10-22T13:10:04,927 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-10-22T13:10:04,928 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_trace.o 2023-10-22T13:10:05,137 In function ‘FM_extendSeed’, 2023-10-22T13:10:05,138 inlined from ‘p7_SSVFM_longlarget’ at vendor/hmmer/src/fm_ssv.c:808:5: 2023-10-22T13:10:05,139 vendor/hmmer/src/fm_ssv.c:696:31: warning: ‘max_hit_end’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:10:05,140 696 | diag->length = max_hit_end - max_hit_start + 1; 2023-10-22T13:10:05,141 | ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-22T13:10:05,141 vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’: 2023-10-22T13:10:05,142 vendor/hmmer/src/fm_ssv.c:647:37: note: ‘max_hit_end’ was declared here 2023-10-22T13:10:05,143 647 | int64_t hit_start, max_hit_start, max_hit_end; 2023-10-22T13:10:05,144 | ^~~~~~~~~~~ 2023-10-22T13:10:05,145 In function ‘FM_extendSeed’, 2023-10-22T13:10:05,146 inlined from ‘p7_SSVFM_longlarget’ at vendor/hmmer/src/fm_ssv.c:808:5: 2023-10-22T13:10:05,147 vendor/hmmer/src/fm_ssv.c:695:32: warning: ‘max_hit_start’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:10:05,148 695 | diag->k = model_start + max_hit_start - 1; 2023-10-22T13:10:05,149 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-10-22T13:10:05,149 vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’: 2023-10-22T13:10:05,150 vendor/hmmer/src/fm_ssv.c:647:22: note: ‘max_hit_start’ was declared here 2023-10-22T13:10:05,151 647 | int64_t hit_start, max_hit_start, max_hit_end; 2023-10-22T13:10:05,152 | ^~~~~~~~~~~~~ 2023-10-22T13:10:05,490 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/mpi.o from vendor/hmmer/src/impl_neon/mpi.c 2023-10-22T13:10:05,490 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/mpi.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/mpi.o 2023-10-22T13:10:05,597 generating build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/p7_hmmfile.o from build/temp.linux-armv7l-cpython-311/p7_hmmfile.c 2023-10-22T13:10:05,598 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c build/temp.linux-armv7l-cpython-311/p7_hmmfile.c -o build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/p7_hmmfile.o 2023-10-22T13:10:05,600 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/ssvfilter.o from vendor/hmmer/src/impl_neon/ssvfilter.c 2023-10-22T13:10:05,601 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/ssvfilter.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/ssvfilter.o 2023-10-22T13:10:06,096 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/vitfilter.o from vendor/hmmer/src/impl_neon/vitfilter.c 2023-10-22T13:10:06,097 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/vitfilter.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/vitfilter.o 2023-10-22T13:10:06,438 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c: In function ‘p7_hmmfile_WriteBinary’: 2023-10-22T13:10:06,439 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1026:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,440 1026 | if (fwrite((char *) hmm->mat[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,441 | ^~ 2023-10-22T13:10:06,443 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1028:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,444 1028 | if (fwrite((char *) hmm->ins[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,445 | ^~ 2023-10-22T13:10:06,448 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1037:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,449 1037 | if ((hmm->flags & p7H_RF) && (fwrite((char *) hmm->rf, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */ 2023-10-22T13:10:06,450 | ^~ 2023-10-22T13:10:06,452 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1038:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,453 1038 | if ((hmm->flags & p7H_MMASK)&& (fwrite((char *) hmm->mm, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */ 2023-10-22T13:10:06,453 | ^~ 2023-10-22T13:10:06,455 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1039:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,456 1039 | if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* don't need to test for >=3e format; p7H_CONS flag suffices (didn't exist pre-3e) */ 2023-10-22T13:10:06,457 | ^~ 2023-10-22T13:10:06,459 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1040:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,459 1040 | if ((hmm->flags & p7H_CS) && (fwrite((char *) hmm->cs, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,460 | ^~ 2023-10-22T13:10:06,462 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1041:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,463 1041 | if ((hmm->flags & p7H_CA) && (fwrite((char *) hmm->ca, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,464 | ^~ 2023-10-22T13:10:06,467 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1047:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,468 1047 | if ((hmm->flags & p7H_MAP) && (fwrite((char *) hmm->map, sizeof(int), hmm->M+1, fp) != hmm->M+1)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,469 | ^~ 2023-10-22T13:10:06,472 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:1064:96: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,474 1064 | if ((hmm->flags & p7H_COMPO) && (fwrite((char *) hmm->compo, sizeof(float), hmm->abc->K, fp) != hmm->abc->K)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,475 | ^~ 2023-10-22T13:10:06,595 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c: In function ‘multiline’: 2023-10-22T13:10:06,598 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:2022:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,599 2022 | if (fwrite(sptr, sizeof(char), n, fp) != n) ESL_EXCEPTION_SYS(eslEWRITE, "hmm write failed"); /* using fwrite lets us write fixed # of chars */ 2023-10-22T13:10:06,600 | ^~ 2023-10-22T13:10:06,608 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c: In function ‘write_bin_string’: 2023-10-22T13:10:06,611 build/temp.linux-armv7l-cpython-311/p7_hmmfile.c:2145:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-10-22T13:10:06,611 2145 | if (fwrite((char *) s, sizeof(char), len, fp) != len) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-10-22T13:10:06,612 | ^~ 2023-10-22T13:10:07,567 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/optacc.o from vendor/hmmer/src/impl_neon/optacc.c 2023-10-22T13:10:07,568 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/optacc.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/optacc.o 2023-10-22T13:10:08,127 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_scoredata.o from vendor/hmmer/src/p7_scoredata.c 2023-10-22T13:10:08,128 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/p7_scoredata.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_scoredata.o 2023-10-22T13:10:09,336 In function ‘get_postprob’, 2023-10-22T13:10:09,336 inlined from ‘p7_OATrace’ at vendor/hmmer/src/impl_neon/optacc.c:253:18: 2023-10-22T13:10:09,337 vendor/hmmer/src/impl_neon/optacc.c:268:21: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:10:09,339 268 | int q = (k-1) % Q; /* (q,r) is position of the current DP cell M(i,k) */ 2023-10-22T13:10:09,340 | ~~^~~ 2023-10-22T13:10:09,341 vendor/hmmer/src/impl_neon/optacc.c: In function ‘p7_OATrace’: 2023-10-22T13:10:09,342 vendor/hmmer/src/impl_neon/optacc.c:397:16: note: ‘kmax’ was declared here 2023-10-22T13:10:09,343 397 | int smax, kmax; 2023-10-22T13:10:09,344 | ^~~~ 2023-10-22T13:10:09,345 vendor/hmmer/src/impl_neon/optacc.c:254:21: warning: ‘smax’ may be used uninitialized [-Wmaybe-uninitialized] 2023-10-22T13:10:09,346 254 | if ((status = p7_trace_AppendWithPP(tr, s1, k, i, postprob)) != eslOK) return status; 2023-10-22T13:10:09,347 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-10-22T13:10:09,348 vendor/hmmer/src/impl_neon/optacc.c:397:10: note: ‘smax’ was declared here 2023-10-22T13:10:09,348 397 | int smax, kmax; 2023-10-22T13:10:09,349 | ^~~~ 2023-10-22T13:10:09,813 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/null2.o from vendor/hmmer/src/impl_neon/null2.c 2023-10-22T13:10:09,814 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/null2.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/null2.o 2023-10-22T13:10:09,951 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmpgmd2msa.o from vendor/hmmer/src/hmmpgmd2msa.c 2023-10-22T13:10:09,952 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/hmmpgmd2msa.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmpgmd2msa.o 2023-10-22T13:10:10,866 vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2msa’: 2023-10-22T13:10:10,867 vendor/hmmer/src/hmmpgmd2msa.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,868 131 | for (i = 0; i < stats->nhits; ++i) { 2023-10-22T13:10:10,869 | ^ 2023-10-22T13:10:10,872 vendor/hmmer/src/hmmpgmd2msa.c:144:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,873 144 | for (i=0; inhits; i++) { 2023-10-22T13:10:10,874 | ^ 2023-10-22T13:10:10,875 vendor/hmmer/src/hmmpgmd2msa.c:163:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,876 163 | for (i = 0; i < th->N; i++) { 2023-10-22T13:10:10,877 | ^ 2023-10-22T13:10:10,878 vendor/hmmer/src/hmmpgmd2msa.c:172:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,879 172 | for (i = 0; i < th->N; i++) { 2023-10-22T13:10:10,881 | ^ 2023-10-22T13:10:10,889 vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2stats_old’: 2023-10-22T13:10:10,891 vendor/hmmer/src/hmmpgmd2msa.c:311:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,892 311 | for (i=0; inhits; i++) { 2023-10-22T13:10:10,893 | ^ 2023-10-22T13:10:10,895 vendor/hmmer/src/hmmpgmd2msa.c:327:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,896 327 | for (i = 0; i < th.N; i++) 2023-10-22T13:10:10,897 | ^ 2023-10-22T13:10:10,905 vendor/hmmer/src/hmmpgmd2msa.c:450:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,906 450 | for (i = 0; i < th.N; i++) { 2023-10-22T13:10:10,907 | ^ 2023-10-22T13:10:10,910 vendor/hmmer/src/hmmpgmd2msa.c:473:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-10-22T13:10:10,911 473 | for (i = 0; i < th.N; i++) { 2023-10-22T13:10:10,911 | ^ 2023-10-22T13:10:11,121 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/p7_oprofile.o from vendor/hmmer/src/impl_neon/p7_oprofile.c 2023-10-22T13:10:11,122 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/p7_oprofile.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/p7_oprofile.o 2023-10-22T13:10:52,830 generating build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/stotrace.o from vendor/hmmer/src/impl_neon/stotrace.c 2023-10-22T13:10:52,830 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-311 -I/usr/include/python3.11 -c vendor/hmmer/src/impl_neon/stotrace.c -o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/stotrace.o 2023-10-22T13:10:53,759 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-311/libhmmer.a build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/build.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/cachedb.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/cachedb_shard.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/emit.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/errors.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/evalues.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/eweight.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_decoding.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback_chk.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_fwdback_banded.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_null2.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_msv.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_optacc.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_stotrace.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_viterbi.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/generic_vtrace.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/h2_io.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/heatmap.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmlogo.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdmstr_shard.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmd_search_status.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdwrkr_shard.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmdutils.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmer.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/logsum.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelconfig.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/modelstats.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/mpisupport.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/seqmodel.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/tracealign.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_alidisplay.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_bg.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_builder.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domain.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_domaindef.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gbands.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmx.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxb.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_gmxchk.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hit.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmm.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmcache.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmd_search_stats.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_hmmwindow.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_pipeline.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_prior.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_profile.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_spensemble.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_tophits.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_trace.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/p7_scoredata.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/hmmpgmd2msa.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_alphabet.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_general.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_sse.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/fm_ssv.o build/temp.linux-armv7l-cpython-311/build/temp.linux-armv7l-cpython-311/p7_hmmfile.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/p7_omx.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/io.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/fwdback.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/vitfilter.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/optacc.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/msvfilter.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/decoding.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/mpi.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/ssvfilter.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/stotrace.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/null2.o build/temp.linux-armv7l-cpython-311/vendor/hmmer/src/impl_neon/p7_oprofile.o 2023-10-22T13:10:54,044 running build_ext 2023-10-22T13:10:54,045 Building HMMER with NEON for CPU architecture: 'armv7l' 2023-10-22T13:11:07,924 performance hint: pyhmmer/exceptions.pxi:27:5: Exception check on 'py_handler' will always require the GIL to be acquired. 2023-10-22T13:11:07,925 Possible solutions: 2023-10-22T13:11:07,925 1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:07,926 2. Use an 'int' return type on the function to allow an error code to be returned. 2023-10-22T13:11:11,678 performance hint: pyhmmer/easel.pyx:605:31: Exception check will always require the GIL to be acquired. 2023-10-22T13:11:11,679 Possible solutions: 2023-10-22T13:11:11,679 1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:11,680 2. Use an 'int' return type on the function to allow an error code to be returned. 2023-10-22T13:11:12,970 performance hint: pyhmmer/easel.pyx:5125:35: Exception check will always require the GIL to be acquired. 2023-10-22T13:11:12,971 Possible solutions: 2023-10-22T13:11:12,972 1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:12,972 2. Use an 'int' return type on the function to allow an error code to be returned. 2023-10-22T13:11:13,131 performance hint: pyhmmer/easel.pyx:5752:39: Exception check will always require the GIL to be acquired. 2023-10-22T13:11:13,131 Possible solutions: 2023-10-22T13:11:13,132 1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:13,133 2. Use an 'int' return type on the function to allow an error code to be returned. 2023-10-22T13:11:18,997 performance hint: pyhmmer/exceptions.pxi:27:5: Exception check on 'py_handler' will always require the GIL to be acquired. 2023-10-22T13:11:18,997 Possible solutions: 2023-10-22T13:11:18,998 1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:18,999 2. Use an 'int' return type on the function to allow an error code to be returned. 2023-10-22T13:11:24,239 performance hint: pyhmmer/plan7.pyx:2262:28: Exception check will always require the GIL to be acquired. 2023-10-22T13:11:24,240 Possible solutions: 2023-10-22T13:11:24,241 1. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:24,241 2. Use an 'int' return type on the function to allow an error code to be returned. 2023-10-22T13:11:25,425 performance hint: pyhmmer/plan7.pyx:6076:52: Exception check will always require the GIL to be acquired. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:25,680 performance hint: pyhmmer/plan7.pyx:7184:54: Exception check will always require the GIL to be acquired. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:25,685 performance hint: pyhmmer/plan7.pyx:7209:58: Exception check will always require the GIL to be acquired. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:25,686 performance hint: pyhmmer/plan7.pyx:7214:62: Exception check will always require the GIL to be acquired. Declare the function as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2023-10-22T13:11:26,593 Compiling pyhmmer/errors.pyx because it changed. 2023-10-22T13:11:26,594 Compiling pyhmmer/easel.pyx because it changed. 2023-10-22T13:11:26,594 Compiling pyhmmer/plan7.pyx because it changed. 2023-10-22T13:11:26,595 Compiling pyhmmer/daemon.pyx because it changed. 2023-10-22T13:11:26,595 [1/4] Cythonizing pyhmmer/daemon.pyx 2023-10-22T13:11:26,596 [2/4] Cythonizing pyhmmer/easel.pyx 2023-10-22T13:11:26,596 [3/4] Cythonizing pyhmmer/errors.pyx 2023-10-22T13:11:26,597 [4/4] Cythonizing pyhmmer/plan7.pyx 2023-10-22T13:11:26,597 checking whether `PyInterpreterState_GetID` is available 2023-10-22T13:11:26,598 creating tmp 2023-10-22T13:11:26,598 creating tmp/pip-wheel-7mi90ebu 2023-10-22T13:11:26,599 creating tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6 2023-10-22T13:11:26,600 creating tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6/build 2023-10-22T13:11:26,600 creating tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6/build/temp.linux-armv7l-cpython-311 2023-10-22T13:11:26,601 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c /tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6/build/temp.linux-armv7l-cpython-311/have_getid1bek8xpr.c -o tmp/pip-wheel-7mi90ebu/pyhmmer_426bf67058364ad985b98133b9d9dac6/build/temp.linux-armv7l-cpython-311/have_getid1bek8xpr.o -Werror=implicit-function-declaration 2023-10-22T13:11:26,938 yes 2023-10-22T13:11:26,939 building pyhmmer.errors for linux-armv7l with unix compiler 2023-10-22T13:11:26,945 building 'pyhmmer.errors' extension 2023-10-22T13:11:26,946 creating build/temp.linux-armv7l-cpython-311/pyhmmer 2023-10-22T13:11:26,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-311 -Ivendor/easel -I/usr/include/python3.11 -c pyhmmer/errors.c -o build/temp.linux-armv7l-cpython-311/pyhmmer/errors.o -mfpu=neon -Wno-unused-variable 2023-10-22T13:11:45,406 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pyhmmer/errors.o build/temp.linux-armv7l-cpython-311/libeasel.a -Lbuild/temp.linux-armv7l-cpython-311 -L/usr/lib/arm-linux-gnueabihf -Lbuild/temp.linux-armv7l-cpython-311 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-311/pyhmmer/errors.cpython-311-arm-linux-gnueabihf.so -mfpu=neon 2023-10-22T13:11:45,537 building pyhmmer.easel for linux-armv7l with unix compiler 2023-10-22T13:11:45,538 building 'pyhmmer.easel' extension 2023-10-22T13:11:45,539 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-311 -Ivendor/easel -I/usr/include/python3.11 -c pyhmmer/easel.c -o build/temp.linux-armv7l-cpython-311/pyhmmer/easel.o -mfpu=neon -Wno-unused-variable 2023-10-22T13:11:45,978 In file included from pyhmmer/easel.c:1236: 2023-10-22T13:11:45,978 pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’: 2023-10-22T13:11:45,979 pyhmmer/fileobj/linux.h:48:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:11:45,979 48 | if (len > size) { 2023-10-22T13:11:45,980 | ^ 2023-10-22T13:16:09,775 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pyhmmer/easel.o build/temp.linux-armv7l-cpython-311/libeasel.a -Lbuild/temp.linux-armv7l-cpython-311 -L/usr/lib/arm-linux-gnueabihf -Lbuild/temp.linux-armv7l-cpython-311 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-311/pyhmmer/easel.cpython-311-arm-linux-gnueabihf.so -mfpu=neon 2023-10-22T13:16:10,341 building pyhmmer.plan7 for linux-armv7l with unix compiler 2023-10-22T13:16:10,343 building 'pyhmmer.plan7' extension 2023-10-22T13:16:10,343 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-311 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.11 -c pyhmmer/plan7.c -o build/temp.linux-armv7l-cpython-311/pyhmmer/plan7.o -mfpu=neon -Wno-unused-variable 2023-10-22T13:16:11,190 In file included from pyhmmer/plan7.c:1235: 2023-10-22T13:16:11,191 pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’: 2023-10-22T13:16:11,192 pyhmmer/fileobj/linux.h:48:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:16:11,192 48 | if (len > size) { 2023-10-22T13:16:11,193 | ^ 2023-10-22T13:16:14,914 pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_21OptimizedProfileBlock__allocate’: 2023-10-22T13:16:14,969 pyhmmer/plan7.c:61465:66: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:16:14,969 61465 | for (__pyx_t_10 = __pyx_v_self->_block->listSize; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-10-22T13:16:14,970 | ^ 2023-10-22T13:16:15,950 pyhmmer/plan7.c: In function ‘__pyx_fuse_1__pyx_f_7pyhmmer_5plan7_8Pipeline_search_hmm’: 2023-10-22T13:16:16,013 pyhmmer/plan7.c:70883:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-10-22T13:16:16,014 70883 | __pyx_t_6 = (__pyx_t_10 > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT); 2023-10-22T13:16:16,014 | ^ 2023-10-22T13:22:24,079 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pyhmmer/plan7.o build/temp.linux-armv7l-cpython-311/libhmmer.a build/temp.linux-armv7l-cpython-311/libeasel.a build/temp.linux-armv7l-cpython-311/libdivsufsort.a -Lbuild/temp.linux-armv7l-cpython-311 -L/usr/lib/arm-linux-gnueabihf -Lbuild/temp.linux-armv7l-cpython-311 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-311/pyhmmer/plan7.cpython-311-arm-linux-gnueabihf.so -mfpu=neon 2023-10-22T13:22:24,941 building pyhmmer.daemon for linux-armv7l with unix compiler 2023-10-22T13:22:24,942 building 'pyhmmer.daemon' extension 2023-10-22T13:22:24,943 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-311 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.11 -c pyhmmer/daemon.c -o build/temp.linux-armv7l-cpython-311/pyhmmer/daemon.o -mfpu=neon -Wno-unused-variable 2023-10-22T13:23:08,907 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pyhmmer/daemon.o build/temp.linux-armv7l-cpython-311/libhmmer.a build/temp.linux-armv7l-cpython-311/libeasel.a build/temp.linux-armv7l-cpython-311/libdivsufsort.a -Lbuild/temp.linux-armv7l-cpython-311 -L/usr/lib/arm-linux-gnueabihf -Lbuild/temp.linux-armv7l-cpython-311 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-311/pyhmmer/daemon.cpython-311-arm-linux-gnueabihf.so -mfpu=neon 2023-10-22T13:23:09,179 installing to build/bdist.linux-armv7l/wheel 2023-10-22T13:23:09,179 running install 2023-10-22T13:23:09,204 running install_lib 2023-10-22T13:23:09,211 creating build/bdist.linux-armv7l 2023-10-22T13:23:09,212 creating build/bdist.linux-armv7l/wheel 2023-10-22T13:23:09,214 creating build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:09,215 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,216 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/utils.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,218 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,219 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_msa.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,222 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_bitfield.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,224 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_block.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,226 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_sequence.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,228 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_keyhash.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,230 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_gencode.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,232 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_msafile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,235 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_alphabet.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,237 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_randomness.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,239 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,241 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_ssi.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,243 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_vector.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,246 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_sequencefile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,248 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_easel/test_matrix.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-10-22T13:23:09,251 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,252 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_tracealigner.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,255 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_block.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,257 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_hmm.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,260 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_hmmfile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,262 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_tophits.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,264 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,266 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_builder.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,268 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,270 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_hit.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,273 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_profile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,275 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_pipeline.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,277 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_traces.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,279 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_plan7/test_background.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-10-22T13:23:09,281 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_errors.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,284 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data 2023-10-22T13:23:09,285 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-10-22T13:23:09,286 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa/LuxC.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-10-22T13:23:09,289 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa/LuxC.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-10-22T13:23:09,291 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-10-22T13:23:09,294 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/msa/laccase.clw -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-10-22T13:23:09,297 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms 2023-10-22T13:23:09,298 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/make.sh -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms 2023-10-22T13:23:09,300 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:23:09,301 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:23:09,375 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:23:09,379 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:23:09,383 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-10-22T13:23:09,386 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,387 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,390 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,394 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,398 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,401 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,457 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,493 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,580 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,584 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,585 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,587 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,590 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,592 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,595 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,597 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,600 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,603 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,623 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,625 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,629 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-10-22T13:23:09,632 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-10-22T13:23:09,634 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-10-22T13:23:09,637 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-10-22T13:23:09,640 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-10-22T13:23:09,643 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-10-22T13:23:09,680 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,681 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,685 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,689 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,694 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,778 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,781 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,790 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-10-22T13:23:09,797 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,798 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/LuxC.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,801 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,824 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,828 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/CP000560.2.fna -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,886 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/PKSI.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,888 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,893 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/seqs/bmyD.fna -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-10-22T13:23:09,896 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,897 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,899 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,902 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,904 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,906 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,909 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,911 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,914 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,916 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,918 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-10-22T13:23:09,920 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/README.md -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data 2023-10-22T13:23:09,922 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,923 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,925 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/t2pks.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,928 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/PF02826.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,930 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,933 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/t2pks.domtbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,935 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/bmyD2.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,937 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/PF02826.domtbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,940 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/bmyD3.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,942 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/data/tables/bmyD1.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-10-22T13:23:09,943 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/requirements.txt -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,945 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_hmmer.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,948 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,950 copying build/lib.linux-armv7l-cpython-311/pyhmmer/tests/test_doctest.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-10-22T13:23:09,952 copying build/lib.linux-armv7l-cpython-311/pyhmmer/utils.py -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:09,954 creating build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,955 copying build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj/bsd.h -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,958 copying build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj/__init__.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,960 copying build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj/util.h -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,962 copying build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj/linux.h -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,964 copying build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj/bsd.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,965 copying build/lib.linux-armv7l-cpython-311/pyhmmer/fileobj/linux.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-10-22T13:23:09,967 copying build/lib.linux-armv7l-cpython-311/pyhmmer/exceptions.pxi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:09,969 copying build/lib.linux-armv7l-cpython-311/pyhmmer/errors.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:09,971 copying build/lib.linux-armv7l-cpython-311/pyhmmer/easel.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:09,973 copying build/lib.linux-armv7l-cpython-311/pyhmmer/errors.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:09,975 copying build/lib.linux-armv7l-cpython-311/pyhmmer/daemon.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,018 copying build/lib.linux-armv7l-cpython-311/pyhmmer/plan7.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,226 copying build/lib.linux-armv7l-cpython-311/pyhmmer/hmmer.py -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,230 copying build/lib.linux-armv7l-cpython-311/pyhmmer/plan7.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,232 copying build/lib.linux-armv7l-cpython-311/pyhmmer/daemon.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,234 copying build/lib.linux-armv7l-cpython-311/pyhmmer/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,236 creating build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,237 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/esl_sqio_ascii.h -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,239 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/__init__.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,240 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/p7_tophits.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,242 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/esl_sqio_ascii.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,244 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/p7_hmmfile.h -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,246 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/p7_tophits.h -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,248 copying build/lib.linux-armv7l-cpython-311/pyhmmer/reexports/p7_hmmfile.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-10-22T13:23:10,250 copying build/lib.linux-armv7l-cpython-311/pyhmmer/errors.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,267 copying build/lib.linux-armv7l-cpython-311/pyhmmer/easel.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,270 copying build/lib.linux-armv7l-cpython-311/pyhmmer/daemon.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,272 copying build/lib.linux-armv7l-cpython-311/pyhmmer/_getid.pxi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,274 copying build/lib.linux-armv7l-cpython-311/pyhmmer/py.typed -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,276 copying build/lib.linux-armv7l-cpython-311/pyhmmer/easel.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,283 copying build/lib.linux-armv7l-cpython-311/pyhmmer/easel.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,402 copying build/lib.linux-armv7l-cpython-311/pyhmmer/plan7.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,404 copying build/lib.linux-armv7l-cpython-311/pyhmmer/daemon.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,407 copying build/lib.linux-armv7l-cpython-311/pyhmmer/plan7.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-10-22T13:23:10,414 running install_egg_info 2023-10-22T13:23:10,432 Copying pyhmmer.egg-info to build/bdist.linux-armv7l/wheel/pyhmmer-0.10.3-py3.11.egg-info 2023-10-22T13:23:10,445 running install_scripts 2023-10-22T13:23:10,496 creating build/bdist.linux-armv7l/wheel/pyhmmer-0.10.3.dist-info/WHEEL 2023-10-22T13:23:10,499 creating '/tmp/pip-wheel-hewklm7b/.tmp-4zg403v6/pyhmmer-0.10.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-22T13:23:10,501 adding 'pyhmmer/__init__.py' 2023-10-22T13:23:10,503 adding 'pyhmmer/_getid.pxi' 2023-10-22T13:23:11,019 adding 'pyhmmer/daemon.cpython-311-arm-linux-gnueabihf.so' 2023-10-22T13:23:11,039 adding 'pyhmmer/daemon.pxd' 2023-10-22T13:23:11,040 adding 'pyhmmer/daemon.pyi' 2023-10-22T13:23:11,043 adding 'pyhmmer/daemon.pyx' 2023-10-22T13:23:12,578 adding 'pyhmmer/easel.cpython-311-arm-linux-gnueabihf.so' 2023-10-22T13:23:12,644 adding 'pyhmmer/easel.pxd' 2023-10-22T13:23:12,647 adding 'pyhmmer/easel.pyi' 2023-10-22T13:23:12,668 adding 'pyhmmer/easel.pyx' 2023-10-22T13:23:12,804 adding 'pyhmmer/errors.cpython-311-arm-linux-gnueabihf.so' 2023-10-22T13:23:12,811 adding 'pyhmmer/errors.pyi' 2023-10-22T13:23:12,812 adding 'pyhmmer/errors.pyx' 2023-10-22T13:23:12,814 adding 'pyhmmer/exceptions.pxi' 2023-10-22T13:23:12,821 adding 'pyhmmer/hmmer.py' 2023-10-22T13:23:15,349 adding 'pyhmmer/plan7.cpython-311-arm-linux-gnueabihf.so' 2023-10-22T13:23:15,463 adding 'pyhmmer/plan7.pxd' 2023-10-22T13:23:15,466 adding 'pyhmmer/plan7.pyi' 2023-10-22T13:23:15,496 adding 'pyhmmer/plan7.pyx' 2023-10-22T13:23:15,500 adding 'pyhmmer/py.typed' 2023-10-22T13:23:15,501 adding 'pyhmmer/utils.py' 2023-10-22T13:23:15,503 adding 'pyhmmer/fileobj/__init__.pxd' 2023-10-22T13:23:15,505 adding 'pyhmmer/fileobj/bsd.h' 2023-10-22T13:23:15,506 adding 'pyhmmer/fileobj/bsd.pxd' 2023-10-22T13:23:15,507 adding 'pyhmmer/fileobj/linux.h' 2023-10-22T13:23:15,509 adding 'pyhmmer/fileobj/linux.pxd' 2023-10-22T13:23:15,510 adding 'pyhmmer/fileobj/util.h' 2023-10-22T13:23:15,512 adding 'pyhmmer/reexports/__init__.pxd' 2023-10-22T13:23:15,513 adding 'pyhmmer/reexports/esl_sqio_ascii.h' 2023-10-22T13:23:15,514 adding 'pyhmmer/reexports/esl_sqio_ascii.pxd' 2023-10-22T13:23:15,516 adding 'pyhmmer/reexports/p7_hmmfile.h' 2023-10-22T13:23:15,517 adding 'pyhmmer/reexports/p7_hmmfile.pxd' 2023-10-22T13:23:15,518 adding 'pyhmmer/reexports/p7_tophits.h' 2023-10-22T13:23:15,519 adding 'pyhmmer/reexports/p7_tophits.pxd' 2023-10-22T13:23:15,521 adding 'pyhmmer/tests/__init__.py' 2023-10-22T13:23:15,522 adding 'pyhmmer/tests/requirements.txt' 2023-10-22T13:23:15,524 adding 'pyhmmer/tests/test_doctest.py' 2023-10-22T13:23:15,525 adding 'pyhmmer/tests/test_errors.py' 2023-10-22T13:23:15,528 adding 'pyhmmer/tests/test_hmmer.py' 2023-10-22T13:23:15,530 adding 'pyhmmer/tests/utils.py' 2023-10-22T13:23:15,531 adding 'pyhmmer/tests/data/README.md' 2023-10-22T13:23:15,533 adding 'pyhmmer/tests/data/hmms/make.sh' 2023-10-22T13:23:15,537 adding 'pyhmmer/tests/data/hmms/bin/PF02826.h3m' 2023-10-22T13:23:15,541 adding 'pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m' 2023-10-22T13:23:15,546 adding 'pyhmmer/tests/data/hmms/bin/Thioesterase.h3m' 2023-10-22T13:23:15,709 adding 'pyhmmer/tests/data/hmms/bin/t2pks.h3m' 2023-10-22T13:23:15,743 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm' 2023-10-22T13:23:15,746 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f' 2023-10-22T13:23:15,747 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i' 2023-10-22T13:23:15,750 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m' 2023-10-22T13:23:15,755 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p' 2023-10-22T13:23:15,781 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm' 2023-10-22T13:23:15,785 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f' 2023-10-22T13:23:15,786 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i' 2023-10-22T13:23:15,790 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m' 2023-10-22T13:23:15,798 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p' 2023-10-22T13:23:15,819 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm' 2023-10-22T13:23:15,822 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f' 2023-10-22T13:23:15,823 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i' 2023-10-22T13:23:15,827 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m' 2023-10-22T13:23:15,834 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p' 2023-10-22T13:23:16,698 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm' 2023-10-22T13:23:16,865 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f' 2023-10-22T13:23:16,875 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i' 2023-10-22T13:23:17,038 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m' 2023-10-22T13:23:17,365 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p' 2023-10-22T13:23:17,420 adding 'pyhmmer/tests/data/hmms/txt/LuxC.hmm' 2023-10-22T13:23:17,435 adding 'pyhmmer/tests/data/hmms/txt/PF02826.hmm' 2023-10-22T13:23:17,460 adding 'pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm' 2023-10-22T13:23:17,482 adding 'pyhmmer/tests/data/hmms/txt/Thioesterase.hmm' 2023-10-22T13:23:17,492 adding 'pyhmmer/tests/data/hmms/txt/bmyD.hmm' 2023-10-22T13:23:17,528 adding 'pyhmmer/tests/data/hmms/txt/laccase.hmm' 2023-10-22T13:23:18,394 adding 'pyhmmer/tests/data/hmms/txt/t2pks.hmm' 2023-10-22T13:23:18,451 adding 'pyhmmer/tests/data/hmms/txt2/PF02826.hmm2' 2023-10-22T13:23:18,466 adding 'pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2' 2023-10-22T13:23:18,480 adding 'pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2' 2023-10-22T13:23:19,063 adding 'pyhmmer/tests/data/hmms/txt2/t2pks.hmm2' 2023-10-22T13:23:19,103 adding 'pyhmmer/tests/data/jackhmmer/KR-1.sto' 2023-10-22T13:23:19,105 adding 'pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto' 2023-10-22T13:23:19,107 adding 'pyhmmer/tests/data/jackhmmer/KR-2.sto' 2023-10-22T13:23:19,109 adding 'pyhmmer/tests/data/jackhmmer/KR-3.sto' 2023-10-22T13:23:19,111 adding 'pyhmmer/tests/data/jackhmmer/KR-4.sto' 2023-10-22T13:23:19,113 adding 'pyhmmer/tests/data/jackhmmer/KR-5.sto' 2023-10-22T13:23:19,116 adding 'pyhmmer/tests/data/jackhmmer/KR-6.sto' 2023-10-22T13:23:19,117 adding 'pyhmmer/tests/data/jackhmmer/p12748-1.sto' 2023-10-22T13:23:19,119 adding 'pyhmmer/tests/data/jackhmmer/p12748-2.sto' 2023-10-22T13:23:19,120 adding 'pyhmmer/tests/data/jackhmmer/p12748-3.sto' 2023-10-22T13:23:19,122 adding 'pyhmmer/tests/data/msa/LuxC.faa' 2023-10-22T13:23:19,125 adding 'pyhmmer/tests/data/msa/LuxC.hmmalign.sto' 2023-10-22T13:23:19,127 adding 'pyhmmer/tests/data/msa/LuxC.sto' 2023-10-22T13:23:19,128 adding 'pyhmmer/tests/data/msa/laccase.clw' 2023-10-22T13:23:19,257 adding 'pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa' 2023-10-22T13:23:19,302 adding 'pyhmmer/tests/data/seqs/BGC0001090.gbk' 2023-10-22T13:23:21,376 adding 'pyhmmer/tests/data/seqs/CP000560.2.fna' 2023-10-22T13:23:21,455 adding 'pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna' 2023-10-22T13:23:21,457 adding 'pyhmmer/tests/data/seqs/LuxC.faa' 2023-10-22T13:23:21,460 adding 'pyhmmer/tests/data/seqs/PKSI.faa' 2023-10-22T13:23:21,462 adding 'pyhmmer/tests/data/seqs/bmyD.fna' 2023-10-22T13:23:21,464 adding 'pyhmmer/tests/data/tables/A0A089QRB9.domtbl' 2023-10-22T13:23:21,466 adding 'pyhmmer/tests/data/tables/PF02826.domtbl' 2023-10-22T13:23:21,468 adding 'pyhmmer/tests/data/tables/PF02826.tbl' 2023-10-22T13:23:21,469 adding 'pyhmmer/tests/data/tables/bmyD1.tbl' 2023-10-22T13:23:21,471 adding 'pyhmmer/tests/data/tables/bmyD2.tbl' 2023-10-22T13:23:21,472 adding 'pyhmmer/tests/data/tables/bmyD3.tbl' 2023-10-22T13:23:21,478 adding 'pyhmmer/tests/data/tables/t2pks.domtbl' 2023-10-22T13:23:21,480 adding 'pyhmmer/tests/data/tables/t2pks.scan.tbl' 2023-10-22T13:23:21,483 adding 'pyhmmer/tests/data/tables/t2pks.tbl' 2023-10-22T13:23:21,485 adding 'pyhmmer/tests/test_easel/__init__.py' 2023-10-22T13:23:21,486 adding 'pyhmmer/tests/test_easel/test_alphabet.py' 2023-10-22T13:23:21,488 adding 'pyhmmer/tests/test_easel/test_bitfield.py' 2023-10-22T13:23:21,489 adding 'pyhmmer/tests/test_easel/test_block.py' 2023-10-22T13:23:21,490 adding 'pyhmmer/tests/test_easel/test_gencode.py' 2023-10-22T13:23:21,492 adding 'pyhmmer/tests/test_easel/test_keyhash.py' 2023-10-22T13:23:21,493 adding 'pyhmmer/tests/test_easel/test_matrix.py' 2023-10-22T13:23:21,495 adding 'pyhmmer/tests/test_easel/test_msa.py' 2023-10-22T13:23:21,496 adding 'pyhmmer/tests/test_easel/test_msafile.py' 2023-10-22T13:23:21,498 adding 'pyhmmer/tests/test_easel/test_randomness.py' 2023-10-22T13:23:21,499 adding 'pyhmmer/tests/test_easel/test_sequence.py' 2023-10-22T13:23:21,501 adding 'pyhmmer/tests/test_easel/test_sequencefile.py' 2023-10-22T13:23:21,502 adding 'pyhmmer/tests/test_easel/test_ssi.py' 2023-10-22T13:23:21,504 adding 'pyhmmer/tests/test_easel/test_vector.py' 2023-10-22T13:23:21,506 adding 'pyhmmer/tests/test_plan7/__init__.py' 2023-10-22T13:23:21,507 adding 'pyhmmer/tests/test_plan7/test_background.py' 2023-10-22T13:23:21,509 adding 'pyhmmer/tests/test_plan7/test_block.py' 2023-10-22T13:23:21,511 adding 'pyhmmer/tests/test_plan7/test_builder.py' 2023-10-22T13:23:21,512 adding 'pyhmmer/tests/test_plan7/test_hit.py' 2023-10-22T13:23:21,514 adding 'pyhmmer/tests/test_plan7/test_hmm.py' 2023-10-22T13:23:21,515 adding 'pyhmmer/tests/test_plan7/test_hmmfile.py' 2023-10-22T13:23:21,517 adding 'pyhmmer/tests/test_plan7/test_optimizedprofile.py' 2023-10-22T13:23:21,519 adding 'pyhmmer/tests/test_plan7/test_pipeline.py' 2023-10-22T13:23:21,520 adding 'pyhmmer/tests/test_plan7/test_profile.py' 2023-10-22T13:23:21,522 adding 'pyhmmer/tests/test_plan7/test_tophits.py' 2023-10-22T13:23:21,524 adding 'pyhmmer/tests/test_plan7/test_tracealigner.py' 2023-10-22T13:23:21,525 adding 'pyhmmer/tests/test_plan7/test_traces.py' 2023-10-22T13:23:21,528 adding 'pyhmmer-0.10.3.dist-info/COPYING' 2023-10-22T13:23:21,530 adding 'pyhmmer-0.10.3.dist-info/METADATA' 2023-10-22T13:23:21,531 adding 'pyhmmer-0.10.3.dist-info/WHEEL' 2023-10-22T13:23:21,532 adding 'pyhmmer-0.10.3.dist-info/top_level.txt' 2023-10-22T13:23:21,534 adding 'pyhmmer-0.10.3.dist-info/RECORD' 2023-10-22T13:23:21,732 removing build/bdist.linux-armv7l/wheel 2023-10-22T13:23:23,549 Building wheel for pyhmmer (pyproject.toml): finished with status 'done' 2023-10-22T13:23:24,000 Created wheel for pyhmmer: filename=pyhmmer-0.10.3-cp311-cp311-linux_armv7l.whl size=18814858 sha256=b9211b42cab8b22f0db51d215afc34ee1dc797a653ca5862d538c9f28819f3a6 2023-10-22T13:23:24,002 Stored in directory: /tmp/pip-ephem-wheel-cache-zgpayn1a/wheels/61/27/bc/4d0ab72c97b3789f4187b65d73dad33e4aded951075d650f22 2023-10-22T13:23:24,025 Successfully built pyhmmer 2023-10-22T13:23:24,472 Removed build tracker: '/tmp/pip-build-tracker-y2wdn8un'