2023-10-23T18:25:17,778 Created temporary directory: /tmp/pip-build-tracker-tgn40hga 2023-10-23T18:25:17,779 Initialized build tracking at /tmp/pip-build-tracker-tgn40hga 2023-10-23T18:25:17,780 Created build tracker: /tmp/pip-build-tracker-tgn40hga 2023-10-23T18:25:17,780 Entered build tracker: /tmp/pip-build-tracker-tgn40hga 2023-10-23T18:25:17,781 Created temporary directory: /tmp/pip-wheel-4bwli7b7 2023-10-23T18:25:17,784 Created temporary directory: /tmp/pip-ephem-wheel-cache-cyk3_duo 2023-10-23T18:25:17,806 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-23T18:25:17,809 2 location(s) to search for versions of galaxy-app: 2023-10-23T18:25:17,809 * https://pypi.org/simple/galaxy-app/ 2023-10-23T18:25:17,809 * https://www.piwheels.org/simple/galaxy-app/ 2023-10-23T18:25:17,810 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2023-10-23T18:25:17,811 Getting page https://pypi.org/simple/galaxy-app/ 2023-10-23T18:25:17,813 Found index url https://pypi.org/simple/ 2023-10-23T18:25:18,035 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2023-10-23T18:25:18,039 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2023-10-23T18:25:18,040 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-10-23T18:25:18,041 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2023-10-23T18:25:18,041 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-10-23T18:25:18,042 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2023-10-23T18:25:18,043 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-10-23T18:25:18,043 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2023-10-23T18:25:18,044 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-10-23T18:25:18,045 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2023-10-23T18:25:18,045 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,046 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2023-10-23T18:25:18,047 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,048 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2023-10-23T18:25:18,049 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,050 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2023-10-23T18:25:18,050 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,051 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2023-10-23T18:25:18,052 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,053 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2023-10-23T18:25:18,053 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,054 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2023-10-23T18:25:18,055 Getting page https://www.piwheels.org/simple/galaxy-app/ 2023-10-23T18:25:18,056 Found index url https://www.piwheels.org/simple/ 2023-10-23T18:25:18,224 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2023-10-23T18:25:18,228 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,228 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,229 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,229 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,230 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-10-23T18:25:18,230 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2023-10-23T18:25:18,231 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2023-10-23T18:25:18,232 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2023-10-23T18:25:18,232 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2023-10-23T18:25:18,253 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2023-10-23T18:25:18,272 Collecting galaxy-app==23.0.6 2023-10-23T18:25:18,275 Created temporary directory: /tmp/pip-unpack-0r1r21ri 2023-10-23T18:25:18,508 Downloading galaxy-app-23.0.6.tar.gz (1.1 MB) 2023-10-23T18:25:19,868 Added galaxy-app==23.0.6 from https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-tgn40hga' 2023-10-23T18:25:19,871 Created temporary directory: /tmp/pip-build-env-xoejnbiq 2023-10-23T18:25:19,876 Installing build dependencies: started 2023-10-23T18:25:19,877 Running command pip subprocess to install build dependencies 2023-10-23T18:25:21,062 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2023-10-23T18:25:21,600 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-23T18:25:23,033 Collecting setuptools 2023-10-23T18:25:23,050 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-23T18:25:25,760 Installing collected packages: setuptools 2023-10-23T18:25:28,020 Successfully installed setuptools-68.2.2 2023-10-23T18:25:28,512 Installing build dependencies: finished with status 'done' 2023-10-23T18:25:28,515 Getting requirements to build wheel: started 2023-10-23T18:25:28,517 Running command Getting requirements to build wheel 2023-10-23T18:25:29,172 running egg_info 2023-10-23T18:25:29,176 writing galaxy_app.egg-info/PKG-INFO 2023-10-23T18:25:29,181 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2023-10-23T18:25:29,184 writing entry points to galaxy_app.egg-info/entry_points.txt 2023-10-23T18:25:29,186 writing requirements to galaxy_app.egg-info/requires.txt 2023-10-23T18:25:29,188 writing top-level names to galaxy_app.egg-info/top_level.txt 2023-10-23T18:25:29,239 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:29,291 reading manifest template 'MANIFEST.in' 2023-10-23T18:25:29,822 adding license file 'LICENSE' 2023-10-23T18:25:29,849 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:29,928 Getting requirements to build wheel: finished with status 'done' 2023-10-23T18:25:29,936 Installing backend dependencies: started 2023-10-23T18:25:29,937 Running command pip subprocess to install backend dependencies 2023-10-23T18:25:31,115 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11) 2023-10-23T18:25:31,645 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-23T18:25:32,136 Collecting wheel 2023-10-23T18:25:32,151 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-23T18:25:34,524 Installing collected packages: wheel 2023-10-23T18:25:34,750 Creating /tmp/pip-build-env-xoejnbiq/normal/local/bin 2023-10-23T18:25:34,752 changing mode of /tmp/pip-build-env-xoejnbiq/normal/local/bin/wheel to 755 2023-10-23T18:25:34,763 Successfully installed wheel-0.41.2 2023-10-23T18:25:35,221 Installing backend dependencies: finished with status 'done' 2023-10-23T18:25:35,223 Created temporary directory: /tmp/pip-modern-metadata-uqkmkk3p 2023-10-23T18:25:35,226 Preparing metadata (pyproject.toml): started 2023-10-23T18:25:35,227 Running command Preparing metadata (pyproject.toml) 2023-10-23T18:25:35,784 running dist_info 2023-10-23T18:25:35,804 creating /tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info 2023-10-23T18:25:35,808 writing /tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/PKG-INFO 2023-10-23T18:25:35,813 writing dependency_links to /tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/dependency_links.txt 2023-10-23T18:25:35,815 writing entry points to /tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/entry_points.txt 2023-10-23T18:25:35,817 writing requirements to /tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/requires.txt 2023-10-23T18:25:35,818 writing top-level names to /tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/top_level.txt 2023-10-23T18:25:35,819 writing manifest file '/tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:35,900 reading manifest file '/tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:35,902 reading manifest template 'MANIFEST.in' 2023-10-23T18:25:36,398 adding license file 'LICENSE' 2023-10-23T18:25:36,418 writing manifest file '/tmp/pip-modern-metadata-uqkmkk3p/galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:36,420 creating '/tmp/pip-modern-metadata-uqkmkk3p/galaxy_app-23.0.6.dist-info' 2023-10-23T18:25:36,611 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-23T18:25:36,617 Source in /tmp/pip-wheel-4bwli7b7/galaxy-app_8c8d91a08ffa4ac4be72ee8f96a1af20 has version 23.0.6, which satisfies requirement galaxy-app==23.0.6 from https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz 2023-10-23T18:25:36,618 Removed galaxy-app==23.0.6 from https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-tgn40hga' 2023-10-23T18:25:36,625 Created temporary directory: /tmp/pip-unpack-elheq0u7 2023-10-23T18:25:36,626 Created temporary directory: /tmp/pip-unpack-clwdnwn2 2023-10-23T18:25:36,671 Building wheels for collected packages: galaxy-app 2023-10-23T18:25:36,676 Created temporary directory: /tmp/pip-wheel-fowcwrhu 2023-10-23T18:25:36,676 Destination directory: /tmp/pip-wheel-fowcwrhu 2023-10-23T18:25:36,679 Building wheel for galaxy-app (pyproject.toml): started 2023-10-23T18:25:36,680 Running command Building wheel for galaxy-app (pyproject.toml) 2023-10-23T18:25:37,267 running bdist_wheel 2023-10-23T18:25:37,309 running build 2023-10-23T18:25:37,309 running build_py 2023-10-23T18:25:37,316 creating build 2023-10-23T18:25:37,317 creating build/lib 2023-10-23T18:25:37,317 creating build/lib/galaxy_ext 2023-10-23T18:25:37,319 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2023-10-23T18:25:37,321 creating build/lib/tool_shed_client 2023-10-23T18:25:37,322 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2023-10-23T18:25:37,325 creating build/lib/galaxy 2023-10-23T18:25:37,326 copying galaxy/queues.py -> build/lib/galaxy 2023-10-23T18:25:37,327 copying galaxy/main_config.py -> build/lib/galaxy 2023-10-23T18:25:37,329 copying galaxy/main.py -> build/lib/galaxy 2023-10-23T18:25:37,332 copying galaxy/di.py -> build/lib/galaxy 2023-10-23T18:25:37,333 copying galaxy/config_watchers.py -> build/lib/galaxy 2023-10-23T18:25:37,336 copying galaxy/__init__.py -> build/lib/galaxy 2023-10-23T18:25:37,337 copying galaxy/app.py -> build/lib/galaxy 2023-10-23T18:25:37,340 copying galaxy/structured_app.py -> build/lib/galaxy 2023-10-23T18:25:37,342 copying galaxy/queue_worker.py -> build/lib/galaxy 2023-10-23T18:25:37,346 creating build/lib/galaxy_ext/metadata 2023-10-23T18:25:37,347 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2023-10-23T18:25:37,348 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2023-10-23T18:25:37,351 creating build/lib/galaxy_ext/expressions 2023-10-23T18:25:37,351 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2023-10-23T18:25:37,353 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2023-10-23T18:25:37,355 creating build/lib/galaxy_ext/container_monitor 2023-10-23T18:25:37,356 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2023-10-23T18:25:37,358 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2023-10-23T18:25:37,360 creating build/lib/tool_shed_client/schema 2023-10-23T18:25:37,360 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2023-10-23T18:25:37,363 creating build/lib/galaxy/work 2023-10-23T18:25:37,364 copying galaxy/work/context.py -> build/lib/galaxy/work 2023-10-23T18:25:37,366 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2023-10-23T18:25:37,368 creating build/lib/galaxy/actions 2023-10-23T18:25:37,369 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2023-10-23T18:25:37,370 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2023-10-23T18:25:37,373 creating build/lib/galaxy/forms 2023-10-23T18:25:37,374 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2023-10-23T18:25:37,376 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2023-10-23T18:25:37,378 creating build/lib/galaxy/jobs 2023-10-23T18:25:37,379 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,382 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,384 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,387 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,389 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,391 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,396 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,399 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2023-10-23T18:25:37,402 creating build/lib/galaxy/tools 2023-10-23T18:25:37,403 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,406 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,408 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,409 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,411 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,414 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,417 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,419 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,422 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,427 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,430 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,432 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,435 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,436 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2023-10-23T18:25:37,439 creating build/lib/galaxy/tool_shed 2023-10-23T18:25:37,440 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2023-10-23T18:25:37,442 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2023-10-23T18:25:37,444 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2023-10-23T18:25:37,446 creating build/lib/galaxy/app_unittest_utils 2023-10-23T18:25:37,447 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2023-10-23T18:25:37,450 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2023-10-23T18:25:37,451 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2023-10-23T18:25:37,454 creating build/lib/galaxy/celery 2023-10-23T18:25:37,455 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2023-10-23T18:25:37,457 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2023-10-23T18:25:37,459 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2023-10-23T18:25:37,462 creating build/lib/galaxy/visualization 2023-10-23T18:25:37,463 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2023-10-23T18:25:37,465 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2023-10-23T18:25:37,469 creating build/lib/galaxy/managers 2023-10-23T18:25:37,470 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,472 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,474 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,477 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,480 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,483 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,485 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,487 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,489 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,492 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,495 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,497 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,499 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,501 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,504 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,508 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,511 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,513 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,515 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,517 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,519 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,522 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,524 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,526 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,528 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,530 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,532 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,534 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,536 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,538 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,540 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,542 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,544 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,546 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,549 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,551 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,553 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,555 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,557 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,559 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,561 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,563 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,566 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,568 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,570 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,572 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,574 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,576 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,578 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,580 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,583 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,585 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,587 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,590 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2023-10-23T18:25:37,593 creating build/lib/galaxy/dependencies 2023-10-23T18:25:37,594 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2023-10-23T18:25:37,597 creating build/lib/galaxy/webhooks 2023-10-23T18:25:37,598 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2023-10-23T18:25:37,600 creating build/lib/galaxy/workflow 2023-10-23T18:25:37,601 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,604 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,606 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,608 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,610 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,612 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,613 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,617 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,619 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2023-10-23T18:25:37,623 creating build/lib/galaxy/authnz 2023-10-23T18:25:37,623 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2023-10-23T18:25:37,626 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2023-10-23T18:25:37,628 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2023-10-23T18:25:37,630 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2023-10-23T18:25:37,634 creating build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,634 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,637 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,639 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,642 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,644 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,647 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,650 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,652 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,655 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,657 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,660 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,662 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,664 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,667 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,669 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2023-10-23T18:25:37,671 creating build/lib/galaxy/jobs/rules 2023-10-23T18:25:37,672 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2023-10-23T18:25:37,674 creating build/lib/galaxy/jobs/splitters 2023-10-23T18:25:37,675 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2023-10-23T18:25:37,678 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2023-10-23T18:25:37,679 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2023-10-23T18:25:37,681 creating build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,682 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,684 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,686 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,688 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,689 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,691 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,693 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,695 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2023-10-23T18:25:37,697 creating build/lib/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:37,698 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:37,700 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:37,702 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:37,704 creating build/lib/galaxy/jobs/runners/util/cli 2023-10-23T18:25:37,705 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2023-10-23T18:25:37,707 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2023-10-23T18:25:37,710 creating build/lib/galaxy/jobs/runners/util/condor 2023-10-23T18:25:37,711 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2023-10-23T18:25:37,713 creating build/lib/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:37,714 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:37,717 creating build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,718 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,720 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,722 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,724 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,726 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,728 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:37,730 creating build/lib/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:37,731 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:37,733 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:37,735 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:37,737 creating build/lib/galaxy/tools/search 2023-10-23T18:25:37,737 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2023-10-23T18:25:37,740 creating build/lib/galaxy/tools/actions 2023-10-23T18:25:37,741 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,744 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,746 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,748 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,749 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,751 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,754 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,755 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2023-10-23T18:25:37,759 creating build/lib/galaxy/tools/util 2023-10-23T18:25:37,760 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2023-10-23T18:25:37,763 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2023-10-23T18:25:37,765 creating build/lib/galaxy/tools/filters 2023-10-23T18:25:37,766 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2023-10-23T18:25:37,768 creating build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:37,769 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:37,771 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:37,773 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:37,775 creating build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,776 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,778 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,781 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,783 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,785 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,787 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,790 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,792 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,795 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,798 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,800 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,803 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2023-10-23T18:25:37,807 creating build/lib/galaxy/tools/data 2023-10-23T18:25:37,808 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2023-10-23T18:25:37,811 creating build/lib/galaxy/tools/data_manager 2023-10-23T18:25:37,812 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2023-10-23T18:25:37,814 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2023-10-23T18:25:37,816 creating build/lib/galaxy/tools/expressions 2023-10-23T18:25:37,817 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2023-10-23T18:25:37,819 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2023-10-23T18:25:37,820 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2023-10-23T18:25:37,822 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2023-10-23T18:25:37,824 creating build/lib/galaxy/tools/error_reports 2023-10-23T18:25:37,825 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2023-10-23T18:25:37,827 creating build/lib/galaxy/tools/util/galaxyops 2023-10-23T18:25:37,828 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2023-10-23T18:25:37,830 creating build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,831 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,833 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,834 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,836 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,838 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,840 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,842 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,844 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2023-10-23T18:25:37,847 creating build/lib/galaxy/tool_shed/metadata 2023-10-23T18:25:37,847 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2023-10-23T18:25:37,851 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2023-10-23T18:25:37,853 creating build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,854 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,856 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,859 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,861 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,864 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,866 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,868 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,870 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,871 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,874 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,876 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2023-10-23T18:25:37,879 creating build/lib/galaxy/tool_shed/tools 2023-10-23T18:25:37,880 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2023-10-23T18:25:37,882 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2023-10-23T18:25:37,884 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2023-10-23T18:25:37,887 creating build/lib/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:37,887 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:37,890 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:37,892 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:37,895 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:37,897 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2023-10-23T18:25:37,898 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2023-10-23T18:25:37,900 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2023-10-23T18:25:37,902 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:37,903 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:37,905 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:37,907 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:37,909 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-10-23T18:25:37,910 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-10-23T18:25:37,913 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-10-23T18:25:37,915 creating build/lib/galaxy/visualization/genome 2023-10-23T18:25:37,916 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2023-10-23T18:25:37,919 creating build/lib/galaxy/visualization/tracks 2023-10-23T18:25:37,919 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2023-10-23T18:25:37,922 creating build/lib/galaxy/visualization/data_providers 2023-10-23T18:25:37,923 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2023-10-23T18:25:37,925 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2023-10-23T18:25:37,928 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2023-10-23T18:25:37,930 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2023-10-23T18:25:37,932 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2023-10-23T18:25:37,934 creating build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,936 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,938 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,940 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,943 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,945 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,947 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2023-10-23T18:25:37,949 creating build/lib/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:37,950 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:37,953 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:37,954 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:37,956 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:37,958 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:37,960 creating build/lib/galaxy/workflow/resources 2023-10-23T18:25:37,961 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2023-10-23T18:25:37,964 creating build/lib/galaxy/workflow/reports 2023-10-23T18:25:37,965 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2023-10-23T18:25:37,967 creating build/lib/galaxy/workflow/schedulers 2023-10-23T18:25:37,968 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2023-10-23T18:25:37,971 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2023-10-23T18:25:37,973 creating build/lib/galaxy/workflow/refactor 2023-10-23T18:25:37,974 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2023-10-23T18:25:37,976 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2023-10-23T18:25:37,978 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2023-10-23T18:25:37,980 creating build/lib/galaxy/workflow/reports/generators 2023-10-23T18:25:37,981 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2023-10-23T18:25:37,983 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2023-10-23T18:25:37,986 running egg_info 2023-10-23T18:25:37,989 writing galaxy_app.egg-info/PKG-INFO 2023-10-23T18:25:37,993 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2023-10-23T18:25:37,995 writing entry points to galaxy_app.egg-info/entry_points.txt 2023-10-23T18:25:37,997 writing requirements to galaxy_app.egg-info/requires.txt 2023-10-23T18:25:37,998 writing top-level names to galaxy_app.egg-info/top_level.txt 2023-10-23T18:25:38,034 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:38,049 reading manifest template 'MANIFEST.in' 2023-10-23T18:25:38,537 adding license file 'LICENSE' 2023-10-23T18:25:38,564 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-10-23T18:25:38,569 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2023-10-23T18:25:38,570 !! 2023-10-23T18:25:38,571 ******************************************************************************** 2023-10-23T18:25:38,572 ############################ 2023-10-23T18:25:38,572 # Package would be ignored # 2023-10-23T18:25:38,573 ############################ 2023-10-23T18:25:38,573 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2023-10-23T18:25:38,574 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,575 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,576 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2023-10-23T18:25:38,576 to the `packages` configuration field. 2023-10-23T18:25:38,577 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,578 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,578 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,580 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,581 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,582 If you don't want 'galaxy.tools.bundled' to be distributed and are 2023-10-23T18:25:38,582 already explicitly excluding 'galaxy.tools.bundled' via 2023-10-23T18:25:38,583 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,583 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,584 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,585 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,586 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,588 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,589 even if it does not contain any `.py` files. 2023-10-23T18:25:38,589 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,590 directory, all directories are treated like packages. 2023-10-23T18:25:38,590 ******************************************************************************** 2023-10-23T18:25:38,592 !! 2023-10-23T18:25:38,592 check.warn(importable) 2023-10-23T18:25:38,593 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2023-10-23T18:25:38,593 !! 2023-10-23T18:25:38,594 ******************************************************************************** 2023-10-23T18:25:38,595 ############################ 2023-10-23T18:25:38,595 # Package would be ignored # 2023-10-23T18:25:38,596 ############################ 2023-10-23T18:25:38,597 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2023-10-23T18:25:38,597 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,598 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,598 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2023-10-23T18:25:38,599 to the `packages` configuration field. 2023-10-23T18:25:38,600 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,601 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,602 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,603 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,605 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2023-10-23T18:25:38,605 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2023-10-23T18:25:38,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,606 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,607 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,608 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,611 even if it does not contain any `.py` files. 2023-10-23T18:25:38,612 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,613 directory, all directories are treated like packages. 2023-10-23T18:25:38,613 ******************************************************************************** 2023-10-23T18:25:38,614 !! 2023-10-23T18:25:38,614 check.warn(importable) 2023-10-23T18:25:38,615 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2023-10-23T18:25:38,615 !! 2023-10-23T18:25:38,617 ******************************************************************************** 2023-10-23T18:25:38,617 ############################ 2023-10-23T18:25:38,618 # Package would be ignored # 2023-10-23T18:25:38,618 ############################ 2023-10-23T18:25:38,619 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2023-10-23T18:25:38,619 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,620 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,621 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2023-10-23T18:25:38,621 to the `packages` configuration field. 2023-10-23T18:25:38,623 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,623 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,624 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,625 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,626 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,627 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2023-10-23T18:25:38,628 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2023-10-23T18:25:38,629 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,630 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,631 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,633 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,635 even if it does not contain any `.py` files. 2023-10-23T18:25:38,636 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,636 directory, all directories are treated like packages. 2023-10-23T18:25:38,637 ******************************************************************************** 2023-10-23T18:25:38,638 !! 2023-10-23T18:25:38,638 check.warn(importable) 2023-10-23T18:25:38,639 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.evolution' is absent from the `packages` configuration. 2023-10-23T18:25:38,639 !! 2023-10-23T18:25:38,641 ******************************************************************************** 2023-10-23T18:25:38,642 ############################ 2023-10-23T18:25:38,642 # Package would be ignored # 2023-10-23T18:25:38,643 ############################ 2023-10-23T18:25:38,644 Python recognizes 'galaxy.tools.bundled.evolution' as an importable package[^1], 2023-10-23T18:25:38,645 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,648 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,649 package, please make sure that 'galaxy.tools.bundled.evolution' is explicitly added 2023-10-23T18:25:38,649 to the `packages` configuration field. 2023-10-23T18:25:38,651 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,652 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,653 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,653 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,654 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,655 If you don't want 'galaxy.tools.bundled.evolution' to be distributed and are 2023-10-23T18:25:38,655 already explicitly excluding 'galaxy.tools.bundled.evolution' via 2023-10-23T18:25:38,656 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,656 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,656 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,657 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,658 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,660 even if it does not contain any `.py` files. 2023-10-23T18:25:38,660 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,660 directory, all directories are treated like packages. 2023-10-23T18:25:38,661 ******************************************************************************** 2023-10-23T18:25:38,662 !! 2023-10-23T18:25:38,662 check.warn(importable) 2023-10-23T18:25:38,663 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2023-10-23T18:25:38,663 !! 2023-10-23T18:25:38,665 ******************************************************************************** 2023-10-23T18:25:38,665 ############################ 2023-10-23T18:25:38,666 # Package would be ignored # 2023-10-23T18:25:38,666 ############################ 2023-10-23T18:25:38,667 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2023-10-23T18:25:38,667 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,669 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,669 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2023-10-23T18:25:38,670 to the `packages` configuration field. 2023-10-23T18:25:38,671 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,673 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,674 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,675 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,677 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2023-10-23T18:25:38,678 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2023-10-23T18:25:38,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,680 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,682 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,683 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,685 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,686 even if it does not contain any `.py` files. 2023-10-23T18:25:38,686 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,687 directory, all directories are treated like packages. 2023-10-23T18:25:38,687 ******************************************************************************** 2023-10-23T18:25:38,688 !! 2023-10-23T18:25:38,689 check.warn(importable) 2023-10-23T18:25:38,689 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2023-10-23T18:25:38,690 !! 2023-10-23T18:25:38,691 ******************************************************************************** 2023-10-23T18:25:38,692 ############################ 2023-10-23T18:25:38,692 # Package would be ignored # 2023-10-23T18:25:38,693 ############################ 2023-10-23T18:25:38,693 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2023-10-23T18:25:38,694 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,695 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,695 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2023-10-23T18:25:38,696 to the `packages` configuration field. 2023-10-23T18:25:38,697 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,698 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,698 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,699 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,701 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,702 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2023-10-23T18:25:38,702 already explicitly excluding 'galaxy.tools.bundled.extract' via 2023-10-23T18:25:38,703 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,704 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,704 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,706 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,707 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,708 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,709 even if it does not contain any `.py` files. 2023-10-23T18:25:38,710 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,710 directory, all directories are treated like packages. 2023-10-23T18:25:38,711 ******************************************************************************** 2023-10-23T18:25:38,712 !! 2023-10-23T18:25:38,713 check.warn(importable) 2023-10-23T18:25:38,714 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2023-10-23T18:25:38,714 !! 2023-10-23T18:25:38,717 ******************************************************************************** 2023-10-23T18:25:38,717 ############################ 2023-10-23T18:25:38,718 # Package would be ignored # 2023-10-23T18:25:38,720 ############################ 2023-10-23T18:25:38,722 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2023-10-23T18:25:38,723 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,725 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,726 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2023-10-23T18:25:38,727 to the `packages` configuration field. 2023-10-23T18:25:38,729 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,730 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,731 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,733 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,737 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2023-10-23T18:25:38,738 already explicitly excluding 'galaxy.tools.bundled.filters' via 2023-10-23T18:25:38,739 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,741 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,743 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,744 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,746 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,746 even if it does not contain any `.py` files. 2023-10-23T18:25:38,747 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,747 directory, all directories are treated like packages. 2023-10-23T18:25:38,748 ******************************************************************************** 2023-10-23T18:25:38,749 !! 2023-10-23T18:25:38,749 check.warn(importable) 2023-10-23T18:25:38,750 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2023-10-23T18:25:38,751 !! 2023-10-23T18:25:38,752 ******************************************************************************** 2023-10-23T18:25:38,752 ############################ 2023-10-23T18:25:38,753 # Package would be ignored # 2023-10-23T18:25:38,754 ############################ 2023-10-23T18:25:38,754 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2023-10-23T18:25:38,755 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,756 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,756 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2023-10-23T18:25:38,757 to the `packages` configuration field. 2023-10-23T18:25:38,758 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,760 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,761 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,762 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,763 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2023-10-23T18:25:38,764 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2023-10-23T18:25:38,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,766 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,768 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,771 even if it does not contain any `.py` files. 2023-10-23T18:25:38,772 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,773 directory, all directories are treated like packages. 2023-10-23T18:25:38,773 ******************************************************************************** 2023-10-23T18:25:38,774 !! 2023-10-23T18:25:38,775 check.warn(importable) 2023-10-23T18:25:38,776 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2023-10-23T18:25:38,776 !! 2023-10-23T18:25:38,777 ******************************************************************************** 2023-10-23T18:25:38,778 ############################ 2023-10-23T18:25:38,779 # Package would be ignored # 2023-10-23T18:25:38,779 ############################ 2023-10-23T18:25:38,780 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2023-10-23T18:25:38,780 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,782 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,782 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2023-10-23T18:25:38,783 to the `packages` configuration field. 2023-10-23T18:25:38,784 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,786 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,787 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,788 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,789 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2023-10-23T18:25:38,790 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2023-10-23T18:25:38,791 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,791 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,792 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,793 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,798 even if it does not contain any `.py` files. 2023-10-23T18:25:38,799 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,800 directory, all directories are treated like packages. 2023-10-23T18:25:38,801 ******************************************************************************** 2023-10-23T18:25:38,802 !! 2023-10-23T18:25:38,803 check.warn(importable) 2023-10-23T18:25:38,804 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.interactive.isee' is absent from the `packages` configuration. 2023-10-23T18:25:38,805 !! 2023-10-23T18:25:38,806 ******************************************************************************** 2023-10-23T18:25:38,806 ############################ 2023-10-23T18:25:38,807 # Package would be ignored # 2023-10-23T18:25:38,808 ############################ 2023-10-23T18:25:38,808 Python recognizes 'galaxy.tools.bundled.interactive.isee' as an importable package[^1], 2023-10-23T18:25:38,809 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,810 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,810 package, please make sure that 'galaxy.tools.bundled.interactive.isee' is explicitly added 2023-10-23T18:25:38,811 to the `packages` configuration field. 2023-10-23T18:25:38,812 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,813 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,813 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,814 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,815 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,817 If you don't want 'galaxy.tools.bundled.interactive.isee' to be distributed and are 2023-10-23T18:25:38,817 already explicitly excluding 'galaxy.tools.bundled.interactive.isee' via 2023-10-23T18:25:38,818 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,819 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,820 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,824 even if it does not contain any `.py` files. 2023-10-23T18:25:38,825 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,826 directory, all directories are treated like packages. 2023-10-23T18:25:38,826 ******************************************************************************** 2023-10-23T18:25:38,828 !! 2023-10-23T18:25:38,829 check.warn(importable) 2023-10-23T18:25:38,829 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2023-10-23T18:25:38,830 !! 2023-10-23T18:25:38,832 ******************************************************************************** 2023-10-23T18:25:38,833 ############################ 2023-10-23T18:25:38,834 # Package would be ignored # 2023-10-23T18:25:38,835 ############################ 2023-10-23T18:25:38,836 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2023-10-23T18:25:38,837 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,840 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,841 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2023-10-23T18:25:38,842 to the `packages` configuration field. 2023-10-23T18:25:38,844 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,845 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,846 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,847 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,849 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,851 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2023-10-23T18:25:38,851 already explicitly excluding 'galaxy.tools.bundled.maf' via 2023-10-23T18:25:38,852 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,853 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,854 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,855 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,857 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,859 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,860 even if it does not contain any `.py` files. 2023-10-23T18:25:38,861 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,861 directory, all directories are treated like packages. 2023-10-23T18:25:38,862 ******************************************************************************** 2023-10-23T18:25:38,864 !! 2023-10-23T18:25:38,865 check.warn(importable) 2023-10-23T18:25:38,865 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2023-10-23T18:25:38,866 !! 2023-10-23T18:25:38,868 ******************************************************************************** 2023-10-23T18:25:38,868 ############################ 2023-10-23T18:25:38,869 # Package would be ignored # 2023-10-23T18:25:38,870 ############################ 2023-10-23T18:25:38,871 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2023-10-23T18:25:38,872 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,873 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,874 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2023-10-23T18:25:38,875 to the `packages` configuration field. 2023-10-23T18:25:38,876 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,878 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,880 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,881 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,883 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2023-10-23T18:25:38,884 already explicitly excluding 'galaxy.tools.bundled.meme' via 2023-10-23T18:25:38,885 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,887 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,888 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,890 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,892 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,893 even if it does not contain any `.py` files. 2023-10-23T18:25:38,893 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,894 directory, all directories are treated like packages. 2023-10-23T18:25:38,895 ******************************************************************************** 2023-10-23T18:25:38,896 !! 2023-10-23T18:25:38,897 check.warn(importable) 2023-10-23T18:25:38,898 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2023-10-23T18:25:38,899 !! 2023-10-23T18:25:38,900 ******************************************************************************** 2023-10-23T18:25:38,902 ############################ 2023-10-23T18:25:38,903 # Package would be ignored # 2023-10-23T18:25:38,904 ############################ 2023-10-23T18:25:38,905 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2023-10-23T18:25:38,905 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,907 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,908 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2023-10-23T18:25:38,909 to the `packages` configuration field. 2023-10-23T18:25:38,910 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,912 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,912 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,914 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,916 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,918 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2023-10-23T18:25:38,919 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2023-10-23T18:25:38,920 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,920 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,921 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,924 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,928 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,929 even if it does not contain any `.py` files. 2023-10-23T18:25:38,929 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,930 directory, all directories are treated like packages. 2023-10-23T18:25:38,931 ******************************************************************************** 2023-10-23T18:25:38,933 !! 2023-10-23T18:25:38,933 check.warn(importable) 2023-10-23T18:25:38,934 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2023-10-23T18:25:38,935 !! 2023-10-23T18:25:38,936 ******************************************************************************** 2023-10-23T18:25:38,937 ############################ 2023-10-23T18:25:38,937 # Package would be ignored # 2023-10-23T18:25:38,938 ############################ 2023-10-23T18:25:38,939 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2023-10-23T18:25:38,939 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,941 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,941 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2023-10-23T18:25:38,942 to the `packages` configuration field. 2023-10-23T18:25:38,943 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,943 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,944 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,945 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,947 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,948 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2023-10-23T18:25:38,949 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2023-10-23T18:25:38,949 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,950 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,951 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,952 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,953 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,955 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,956 even if it does not contain any `.py` files. 2023-10-23T18:25:38,956 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,957 directory, all directories are treated like packages. 2023-10-23T18:25:38,957 ******************************************************************************** 2023-10-23T18:25:38,959 !! 2023-10-23T18:25:38,959 check.warn(importable) 2023-10-23T18:25:38,960 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2023-10-23T18:25:38,960 !! 2023-10-23T18:25:38,962 ******************************************************************************** 2023-10-23T18:25:38,962 ############################ 2023-10-23T18:25:38,963 # Package would be ignored # 2023-10-23T18:25:38,963 ############################ 2023-10-23T18:25:38,964 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2023-10-23T18:25:38,965 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,967 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,968 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2023-10-23T18:25:38,969 to the `packages` configuration field. 2023-10-23T18:25:38,970 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,971 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,972 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,973 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:38,974 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:38,975 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2023-10-23T18:25:38,975 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2023-10-23T18:25:38,976 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:38,976 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:38,977 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:38,978 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:38,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:38,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:38,981 even if it does not contain any `.py` files. 2023-10-23T18:25:38,982 On the other hand, currently there is no concept of package data 2023-10-23T18:25:38,983 directory, all directories are treated like packages. 2023-10-23T18:25:38,983 ******************************************************************************** 2023-10-23T18:25:38,985 !! 2023-10-23T18:25:38,986 check.warn(importable) 2023-10-23T18:25:38,986 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2023-10-23T18:25:38,987 !! 2023-10-23T18:25:38,988 ******************************************************************************** 2023-10-23T18:25:38,989 ############################ 2023-10-23T18:25:38,989 # Package would be ignored # 2023-10-23T18:25:38,990 ############################ 2023-10-23T18:25:38,991 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2023-10-23T18:25:38,991 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:38,993 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:38,994 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2023-10-23T18:25:38,995 to the `packages` configuration field. 2023-10-23T18:25:38,997 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:38,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:38,998 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:38,999 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:39,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:39,003 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2023-10-23T18:25:39,003 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2023-10-23T18:25:39,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:39,005 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:39,006 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:39,007 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:39,009 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:39,011 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:39,012 even if it does not contain any `.py` files. 2023-10-23T18:25:39,012 On the other hand, currently there is no concept of package data 2023-10-23T18:25:39,013 directory, all directories are treated like packages. 2023-10-23T18:25:39,013 ******************************************************************************** 2023-10-23T18:25:39,014 !! 2023-10-23T18:25:39,015 check.warn(importable) 2023-10-23T18:25:39,015 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2023-10-23T18:25:39,015 !! 2023-10-23T18:25:39,016 ******************************************************************************** 2023-10-23T18:25:39,017 ############################ 2023-10-23T18:25:39,017 # Package would be ignored # 2023-10-23T18:25:39,018 ############################ 2023-10-23T18:25:39,018 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2023-10-23T18:25:39,019 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:39,020 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:39,020 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2023-10-23T18:25:39,021 to the `packages` configuration field. 2023-10-23T18:25:39,022 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:39,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:39,023 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:39,024 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:39,025 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:39,026 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2023-10-23T18:25:39,026 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2023-10-23T18:25:39,027 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:39,027 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:39,028 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:39,029 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:39,030 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:39,031 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:39,032 even if it does not contain any `.py` files. 2023-10-23T18:25:39,032 On the other hand, currently there is no concept of package data 2023-10-23T18:25:39,033 directory, all directories are treated like packages. 2023-10-23T18:25:39,033 ******************************************************************************** 2023-10-23T18:25:39,035 !! 2023-10-23T18:25:39,035 check.warn(importable) 2023-10-23T18:25:39,036 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2023-10-23T18:25:39,036 !! 2023-10-23T18:25:39,037 ******************************************************************************** 2023-10-23T18:25:39,038 ############################ 2023-10-23T18:25:39,038 # Package would be ignored # 2023-10-23T18:25:39,039 ############################ 2023-10-23T18:25:39,039 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2023-10-23T18:25:39,040 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:39,041 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:39,041 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2023-10-23T18:25:39,042 to the `packages` configuration field. 2023-10-23T18:25:39,043 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:39,043 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:39,044 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:39,045 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:39,045 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:39,046 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2023-10-23T18:25:39,047 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2023-10-23T18:25:39,047 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:39,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:39,048 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:39,049 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:39,050 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:39,052 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:39,052 even if it does not contain any `.py` files. 2023-10-23T18:25:39,053 On the other hand, currently there is no concept of package data 2023-10-23T18:25:39,053 directory, all directories are treated like packages. 2023-10-23T18:25:39,054 ******************************************************************************** 2023-10-23T18:25:39,055 !! 2023-10-23T18:25:39,055 check.warn(importable) 2023-10-23T18:25:39,056 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2023-10-23T18:25:39,056 !! 2023-10-23T18:25:39,057 ******************************************************************************** 2023-10-23T18:25:39,058 ############################ 2023-10-23T18:25:39,058 # Package would be ignored # 2023-10-23T18:25:39,059 ############################ 2023-10-23T18:25:39,059 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2023-10-23T18:25:39,060 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:39,061 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:39,062 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2023-10-23T18:25:39,062 to the `packages` configuration field. 2023-10-23T18:25:39,063 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:39,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:39,065 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:39,066 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:39,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:39,068 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2023-10-23T18:25:39,069 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2023-10-23T18:25:39,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:39,070 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:39,070 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:39,072 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:39,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:39,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:39,074 even if it does not contain any `.py` files. 2023-10-23T18:25:39,075 On the other hand, currently there is no concept of package data 2023-10-23T18:25:39,075 directory, all directories are treated like packages. 2023-10-23T18:25:39,076 ******************************************************************************** 2023-10-23T18:25:39,077 !! 2023-10-23T18:25:39,077 check.warn(importable) 2023-10-23T18:25:39,078 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2023-10-23T18:25:39,078 !! 2023-10-23T18:25:39,079 ******************************************************************************** 2023-10-23T18:25:39,079 ############################ 2023-10-23T18:25:39,080 # Package would be ignored # 2023-10-23T18:25:39,080 ############################ 2023-10-23T18:25:39,081 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2023-10-23T18:25:39,081 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:39,082 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:39,083 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2023-10-23T18:25:39,083 to the `packages` configuration field. 2023-10-23T18:25:39,085 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:39,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:39,086 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:39,087 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:39,088 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:39,089 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2023-10-23T18:25:39,089 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2023-10-23T18:25:39,090 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:39,090 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:39,091 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:39,092 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:39,093 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:39,095 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:39,096 even if it does not contain any `.py` files. 2023-10-23T18:25:39,096 On the other hand, currently there is no concept of package data 2023-10-23T18:25:39,097 directory, all directories are treated like packages. 2023-10-23T18:25:39,097 ******************************************************************************** 2023-10-23T18:25:39,098 !! 2023-10-23T18:25:39,099 check.warn(importable) 2023-10-23T18:25:39,100 /tmp/pip-build-env-xoejnbiq/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2023-10-23T18:25:39,100 !! 2023-10-23T18:25:39,102 ******************************************************************************** 2023-10-23T18:25:39,102 ############################ 2023-10-23T18:25:39,103 # Package would be ignored # 2023-10-23T18:25:39,103 ############################ 2023-10-23T18:25:39,103 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2023-10-23T18:25:39,104 but it is absent from setuptools' `packages` configuration. 2023-10-23T18:25:39,105 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-23T18:25:39,105 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2023-10-23T18:25:39,106 to the `packages` configuration field. 2023-10-23T18:25:39,107 Alternatively, you can also rely on setuptools' discovery methods 2023-10-23T18:25:39,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-23T18:25:39,108 instead of `find_packages(...)`/`find:`). 2023-10-23T18:25:39,109 You can read more about "package discovery" on setuptools documentation page: 2023-10-23T18:25:39,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-23T18:25:39,111 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2023-10-23T18:25:39,111 already explicitly excluding 'galaxy.tools.bundled.stats' via 2023-10-23T18:25:39,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-23T18:25:39,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-23T18:25:39,113 combination with a more fine grained `package-data` configuration. 2023-10-23T18:25:39,114 You can read more about "package data files" on setuptools documentation page: 2023-10-23T18:25:39,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-23T18:25:39,117 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-23T18:25:39,117 even if it does not contain any `.py` files. 2023-10-23T18:25:39,118 On the other hand, currently there is no concept of package data 2023-10-23T18:25:39,119 directory, all directories are treated like packages. 2023-10-23T18:25:39,120 ******************************************************************************** 2023-10-23T18:25:39,121 !! 2023-10-23T18:25:39,121 check.warn(importable) 2023-10-23T18:25:39,122 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2023-10-23T18:25:39,123 copying galaxy/py.typed -> build/lib/galaxy 2023-10-23T18:25:39,123 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,124 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,124 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,125 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,125 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,126 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,126 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,127 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,128 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,128 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,129 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,129 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,130 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,131 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,131 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,132 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2023-10-23T18:25:39,132 creating build/lib/galaxy/tools/bundled 2023-10-23T18:25:39,133 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2023-10-23T18:25:39,134 creating build/lib/galaxy/tools/bundled/data_export 2023-10-23T18:25:39,134 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2023-10-23T18:25:39,135 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2023-10-23T18:25:39,135 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2023-10-23T18:25:39,136 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2023-10-23T18:25:39,136 creating build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,137 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,137 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,138 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,138 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,139 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,139 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,140 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,141 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,142 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,142 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,143 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,143 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,144 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,144 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,145 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,145 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,146 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,146 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,147 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,148 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,148 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,149 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,149 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,150 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,151 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,151 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,152 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,153 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,153 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,154 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,154 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,155 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,155 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,156 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,156 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,157 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,158 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,158 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-10-23T18:25:39,158 creating build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,159 copying galaxy/tools/bundled/evolution/__init__.py -> build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,160 copying galaxy/tools/bundled/evolution/add_scores.py -> build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,160 copying galaxy/tools/bundled/evolution/add_scores.xml -> build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,161 copying galaxy/tools/bundled/evolution/codingSnps.pl -> build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,162 copying galaxy/tools/bundled/evolution/codingSnps.xml -> build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,163 copying galaxy/tools/bundled/evolution/codingSnps_filter.py -> build/lib/galaxy/tools/bundled/evolution 2023-10-23T18:25:39,163 creating build/lib/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:39,164 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:39,164 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:39,165 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:39,165 creating build/lib/galaxy/tools/bundled/extract 2023-10-23T18:25:39,166 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2023-10-23T18:25:39,167 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2023-10-23T18:25:39,167 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2023-10-23T18:25:39,168 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2023-10-23T18:25:39,168 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2023-10-23T18:25:39,169 creating build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,170 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,171 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,171 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,171 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,172 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,172 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,173 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,173 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,174 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,174 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,175 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,175 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,176 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,176 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,177 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,177 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,178 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,178 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,179 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,179 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,180 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,181 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,181 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,182 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,182 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,183 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,183 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,184 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,185 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,185 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,186 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,186 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,187 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,187 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,188 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,188 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,189 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,189 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,190 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,190 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,191 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,191 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,192 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,192 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,193 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,193 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,194 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,194 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,195 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,195 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,196 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,196 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,197 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,197 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,198 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,199 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,199 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,200 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,200 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,201 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,201 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,202 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,202 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,203 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,203 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,204 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,205 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,205 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,206 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,206 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,207 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,207 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,208 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,208 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2023-10-23T18:25:39,209 creating build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,210 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,210 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,211 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,211 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,212 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,213 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,213 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,214 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,215 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:39,215 creating build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,216 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,216 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,217 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,218 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,219 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,221 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,223 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,226 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,228 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,230 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,232 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,234 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,237 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,239 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,242 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,244 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,248 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,250 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,253 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,255 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,258 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,260 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,262 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,264 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,266 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,268 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,271 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,273 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,275 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,278 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,280 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,283 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2023-10-23T18:25:39,286 creating build/lib/galaxy/tools/bundled/interactive/isee 2023-10-23T18:25:39,287 copying galaxy/tools/bundled/interactive/isee/render.py -> build/lib/galaxy/tools/bundled/interactive/isee 2023-10-23T18:25:39,290 creating build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,292 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,294 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,297 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,300 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,304 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,306 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,309 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,312 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,315 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,317 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,320 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,323 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,326 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,328 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,331 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,333 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,335 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,338 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,340 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,343 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,346 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,349 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,351 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,354 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,357 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,359 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,362 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,365 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,367 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,370 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,372 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,375 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,378 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,380 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2023-10-23T18:25:39,383 creating build/lib/galaxy/tools/bundled/meme 2023-10-23T18:25:39,383 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2023-10-23T18:25:39,385 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2023-10-23T18:25:39,388 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2023-10-23T18:25:39,390 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2023-10-23T18:25:39,393 creating build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,394 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,396 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,398 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,400 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,402 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,405 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,408 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:39,411 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,412 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,414 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,416 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,418 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,420 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,422 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,425 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,427 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,429 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:39,432 creating build/lib/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:39,432 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:39,434 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:39,437 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:39,440 creating build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,441 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,443 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,445 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,447 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,449 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,452 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,454 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,456 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,458 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,461 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,463 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,465 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,467 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,470 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,472 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,475 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,477 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,479 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,481 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,483 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,486 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,488 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,490 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,493 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,495 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:39,498 creating build/lib/galaxy/tools/bundled/plotting 2023-10-23T18:25:39,499 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2023-10-23T18:25:39,502 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2023-10-23T18:25:39,504 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2023-10-23T18:25:39,722 creating build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,723 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,725 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,728 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,730 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,732 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,734 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,736 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,739 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:39,741 creating build/lib/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:39,742 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:39,744 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:39,747 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:39,749 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:39,752 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:39,754 creating build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,755 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,758 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,759 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,762 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,765 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,767 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,770 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,772 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:39,775 creating build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,776 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,778 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,780 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,783 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,785 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,787 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,790 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,793 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,795 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,797 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2023-10-23T18:25:39,799 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2023-10-23T18:25:39,804 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2023-10-23T18:25:39,806 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,809 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,811 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,814 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,816 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,818 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,820 copying galaxy/dependencies/typecheck-requirements.txt -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,822 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,824 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2023-10-23T18:25:39,827 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:39,829 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:39,831 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:39,833 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:39,835 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:39,837 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2023-10-23T18:25:39,839 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2023-10-23T18:25:39,841 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2023-10-23T18:25:39,879 installing to build/bdist.linux-armv7l/wheel 2023-10-23T18:25:39,880 running install 2023-10-23T18:25:39,903 running install_lib 2023-10-23T18:25:39,909 creating build/bdist.linux-armv7l 2023-10-23T18:25:39,910 creating build/bdist.linux-armv7l/wheel 2023-10-23T18:25:39,911 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2023-10-23T18:25:39,913 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2023-10-23T18:25:39,914 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2023-10-23T18:25:39,916 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2023-10-23T18:25:39,918 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2023-10-23T18:25:39,919 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2023-10-23T18:25:39,921 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2023-10-23T18:25:39,923 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext 2023-10-23T18:25:39,925 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2023-10-23T18:25:39,926 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2023-10-23T18:25:39,927 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2023-10-23T18:25:39,930 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext 2023-10-23T18:25:39,932 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2023-10-23T18:25:39,933 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2023-10-23T18:25:39,934 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2023-10-23T18:25:39,937 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client 2023-10-23T18:25:39,940 creating build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:39,940 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:39,943 creating build/bdist.linux-armv7l/wheel/galaxy/work 2023-10-23T18:25:39,944 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2023-10-23T18:25:39,946 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work 2023-10-23T18:25:39,948 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2023-10-23T18:25:39,949 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2023-10-23T18:25:39,951 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions 2023-10-23T18:25:39,954 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2023-10-23T18:25:39,955 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2023-10-23T18:25:39,958 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms 2023-10-23T18:25:39,960 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:39,962 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:39,963 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:39,966 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:39,969 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:39,971 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:39,972 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:39,980 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:39,980 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:39,983 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:39,984 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:39,987 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:39,989 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2023-10-23T18:25:39,990 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:39,991 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:39,994 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:39,995 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:39,998 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:40,000 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:40,002 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2023-10-23T18:25:40,003 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2023-10-23T18:25:40,006 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:40,007 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:40,009 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:40,011 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2023-10-23T18:25:40,013 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2023-10-23T18:25:40,015 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2023-10-23T18:25:40,016 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2023-10-23T18:25:40,018 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:40,021 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:40,022 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:40,024 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:40,026 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:40,028 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2023-10-23T18:25:40,030 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:40,032 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:40,033 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2023-10-23T18:25:40,035 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,038 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,040 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,043 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:40,044 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:40,047 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:40,048 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2023-10-23T18:25:40,050 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,053 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,056 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,059 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,063 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,065 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,067 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,070 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,073 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,076 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,078 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2023-10-23T18:25:40,081 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2023-10-23T18:25:40,082 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2023-10-23T18:25:40,084 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:40,087 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:40,091 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2023-10-23T18:25:40,092 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2023-10-23T18:25:40,095 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2023-10-23T18:25:40,097 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2023-10-23T18:25:40,099 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:40,105 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:40,109 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs 2023-10-23T18:25:40,112 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,114 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2023-10-23T18:25:40,115 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search 2023-10-23T18:25:40,118 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,122 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,123 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,127 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,130 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,133 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,136 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,139 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,143 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,145 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2023-10-23T18:25:40,149 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,152 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,155 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,158 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,160 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,163 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2023-10-23T18:25:40,164 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2023-10-23T18:25:40,168 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2023-10-23T18:25:40,169 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2023-10-23T18:25:40,172 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util 2023-10-23T18:25:40,174 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,176 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,179 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,182 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,185 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2023-10-23T18:25:40,186 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2023-10-23T18:25:40,189 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,192 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,194 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,197 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,201 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,202 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,204 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,207 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,209 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,211 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,214 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2023-10-23T18:25:40,216 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,218 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,221 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,223 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,226 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,229 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,232 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,235 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,238 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,242 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,245 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,247 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,251 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2023-10-23T18:25:40,257 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2023-10-23T18:25:40,258 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data 2023-10-23T18:25:40,262 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2023-10-23T18:25:40,263 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2023-10-23T18:25:40,266 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2023-10-23T18:25:40,268 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,270 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,274 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2023-10-23T18:25:40,275 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2023-10-23T18:25:40,278 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2023-10-23T18:25:40,280 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2023-10-23T18:25:40,282 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2023-10-23T18:25:40,284 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2023-10-23T18:25:40,285 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,288 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,289 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,294 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,296 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2023-10-23T18:25:40,297 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2023-10-23T18:25:40,300 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,301 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,303 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,304 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,306 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,309 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,310 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,312 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,314 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2023-10-23T18:25:40,316 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,318 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:40,320 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2023-10-23T18:25:40,322 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2023-10-23T18:25:40,323 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2023-10-23T18:25:40,325 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2023-10-23T18:25:40,327 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2023-10-23T18:25:40,329 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2023-10-23T18:25:40,331 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2023-10-23T18:25:40,335 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,336 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,338 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,340 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,342 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,344 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,346 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,348 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,350 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive/isee 2023-10-23T18:25:40,351 copying build/lib/galaxy/tools/bundled/interactive/isee/render.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive/isee 2023-10-23T18:25:40,353 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,355 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,358 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,360 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,363 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,364 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,366 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,369 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,371 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,372 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,375 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,377 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,379 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,381 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,383 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,384 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,386 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,388 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,390 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,392 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,394 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,395 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,398 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,400 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,402 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2023-10-23T18:25:40,405 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,406 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,408 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,410 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,413 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,416 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,418 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,420 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,422 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2023-10-23T18:25:40,425 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,426 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,428 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,430 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,432 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,435 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,436 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,439 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2023-10-23T18:25:40,441 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,443 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,445 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,448 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,451 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,454 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,457 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,460 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,462 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2023-10-23T18:25:40,467 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,468 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,471 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,474 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,478 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,481 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,485 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,488 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,490 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,493 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,497 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,500 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,504 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,507 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,511 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,515 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,520 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,524 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,528 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,531 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,534 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,537 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,545 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,557 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,562 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,564 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,570 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,573 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,576 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,578 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,581 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,583 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,586 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,588 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,591 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,594 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,597 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,599 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,602 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,604 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,607 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,609 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,612 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,615 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,617 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,620 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,622 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,625 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,627 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,629 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,632 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,635 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,637 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,639 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,642 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,645 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,648 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,650 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,653 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,656 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,658 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,661 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,663 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,666 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,669 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,672 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,674 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,677 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,678 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,681 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,684 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,686 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,689 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,692 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,696 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,698 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,700 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2023-10-23T18:25:40,703 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,705 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,708 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,710 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,713 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,716 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,718 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,721 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2023-10-23T18:25:40,724 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:40,725 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:40,728 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:40,731 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2023-10-23T18:25:40,734 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2023-10-23T18:25:40,735 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2023-10-23T18:25:40,738 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2023-10-23T18:25:40,740 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2023-10-23T18:25:40,744 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2023-10-23T18:25:40,748 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,749 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,752 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,755 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,757 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,760 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,763 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,765 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,768 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,771 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,773 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,775 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,777 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,779 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,782 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,785 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,787 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,789 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,792 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,795 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,798 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,800 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,803 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,806 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,809 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,811 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,814 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,816 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,819 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,821 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,823 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,826 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,828 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,831 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,833 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,835 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,838 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,841 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,843 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2023-10-23T18:25:40,847 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,848 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,851 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,854 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,856 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,860 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,863 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,865 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,869 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,871 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,875 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,877 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,880 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,882 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,885 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,888 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,890 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,893 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,896 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,899 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,902 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,904 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,906 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,909 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,911 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,914 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,917 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,919 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,922 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,925 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,927 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,929 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,931 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,933 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,935 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2023-10-23T18:25:40,937 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2023-10-23T18:25:40,939 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,940 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,942 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,945 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,947 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,949 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,951 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,953 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,955 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,957 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,959 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,961 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,963 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,965 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,967 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,968 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,970 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,971 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,974 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,975 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,978 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,980 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,982 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,984 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,986 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,988 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2023-10-23T18:25:40,991 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:40,992 copying build/lib/galaxy/tools/bundled/evolution/codingSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:40,995 copying build/lib/galaxy/tools/bundled/evolution/add_scores.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:40,998 copying build/lib/galaxy/tools/bundled/evolution/codingSnps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:41,001 copying build/lib/galaxy/tools/bundled/evolution/codingSnps_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:41,004 copying build/lib/galaxy/tools/bundled/evolution/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:41,006 copying build/lib/galaxy/tools/bundled/evolution/add_scores.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/evolution 2023-10-23T18:25:41,009 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2023-10-23T18:25:41,010 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2023-10-23T18:25:41,013 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2023-10-23T18:25:41,015 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2023-10-23T18:25:41,018 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,019 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,022 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,024 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,027 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,029 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,031 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,034 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,037 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,040 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,042 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2023-10-23T18:25:41,045 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,046 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,049 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,051 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,054 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,056 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,059 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,061 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,064 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,066 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2023-10-23T18:25:41,069 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:41,070 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:41,073 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:41,076 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:41,078 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:41,080 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2023-10-23T18:25:41,083 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2023-10-23T18:25:41,084 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2023-10-23T18:25:41,086 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2023-10-23T18:25:41,089 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2023-10-23T18:25:41,091 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2023-10-23T18:25:41,094 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:41,095 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:41,098 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:41,100 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2023-10-23T18:25:41,103 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,106 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,108 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,111 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,114 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,117 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,120 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,122 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools 2023-10-23T18:25:41,125 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,127 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,130 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2023-10-23T18:25:41,131 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2023-10-23T18:25:41,134 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2023-10-23T18:25:41,135 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2023-10-23T18:25:41,139 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2023-10-23T18:25:41,142 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,143 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,146 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,150 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,153 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,156 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,159 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,162 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,164 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,166 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,168 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,171 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2023-10-23T18:25:41,175 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2023-10-23T18:25:41,176 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2023-10-23T18:25:41,179 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2023-10-23T18:25:41,181 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2023-10-23T18:25:41,184 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2023-10-23T18:25:41,186 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2023-10-23T18:25:41,188 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:41,190 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2023-10-23T18:25:41,191 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2023-10-23T18:25:41,194 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2023-10-23T18:25:41,195 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:41,198 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:41,201 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:41,202 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:41,205 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:41,207 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2023-10-23T18:25:41,209 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-10-23T18:25:41,211 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-10-23T18:25:41,214 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-10-23T18:25:41,216 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:41,219 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2023-10-23T18:25:41,220 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2023-10-23T18:25:41,221 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2023-10-23T18:25:41,224 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2023-10-23T18:25:41,226 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2023-10-23T18:25:41,228 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2023-10-23T18:25:41,229 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2023-10-23T18:25:41,231 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2023-10-23T18:25:41,233 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery 2023-10-23T18:25:41,236 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2023-10-23T18:25:41,237 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2023-10-23T18:25:41,238 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2023-10-23T18:25:41,240 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2023-10-23T18:25:41,241 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2023-10-23T18:25:41,243 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2023-10-23T18:25:41,246 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2023-10-23T18:25:41,247 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:41,248 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:41,251 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:41,253 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:41,255 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:41,257 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2023-10-23T18:25:41,259 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2023-10-23T18:25:41,261 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2023-10-23T18:25:41,265 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2023-10-23T18:25:41,267 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2023-10-23T18:25:41,269 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2023-10-23T18:25:41,271 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization 2023-10-23T18:25:41,274 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,275 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,277 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,279 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,282 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,284 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,286 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2023-10-23T18:25:41,289 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,290 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,292 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,294 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,296 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,299 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,302 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,304 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,306 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,308 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,311 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,314 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,316 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,318 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,320 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,323 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,326 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,329 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,331 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,333 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,335 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,338 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,340 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,343 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,345 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,347 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,349 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,350 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,352 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,354 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,356 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,358 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,360 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,362 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,364 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,365 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,368 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,370 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,372 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,374 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,377 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,379 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,381 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,383 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,386 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,389 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,391 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,393 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,395 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,401 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,402 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,404 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,407 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,410 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,412 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,414 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,417 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers 2023-10-23T18:25:41,420 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,421 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,423 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,425 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,427 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,429 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,430 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,432 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,434 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,436 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,437 copying build/lib/galaxy/dependencies/typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies 2023-10-23T18:25:41,439 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,441 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,442 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,444 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2023-10-23T18:25:41,445 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks 2023-10-23T18:25:41,448 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,448 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,451 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,453 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,456 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2023-10-23T18:25:41,457 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2023-10-23T18:25:41,459 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2023-10-23T18:25:41,461 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2023-10-23T18:25:41,462 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2023-10-23T18:25:41,463 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2023-10-23T18:25:41,465 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2023-10-23T18:25:41,467 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2023-10-23T18:25:41,469 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,472 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,474 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2023-10-23T18:25:41,475 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2023-10-23T18:25:41,477 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2023-10-23T18:25:41,479 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2023-10-23T18:25:41,480 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2023-10-23T18:25:41,483 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2023-10-23T18:25:41,485 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2023-10-23T18:25:41,486 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,488 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,492 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,494 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow 2023-10-23T18:25:41,496 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,499 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,501 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy 2023-10-23T18:25:41,504 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2023-10-23T18:25:41,505 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2023-10-23T18:25:41,507 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2023-10-23T18:25:41,510 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2023-10-23T18:25:41,512 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz 2023-10-23T18:25:41,514 running install_egg_info 2023-10-23T18:25:41,525 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-23.0.6-py3.11.egg-info 2023-10-23T18:25:41,537 running install_scripts 2023-10-23T18:25:41,563 creating build/bdist.linux-armv7l/wheel/galaxy_app-23.0.6.dist-info/WHEEL 2023-10-23T18:25:41,565 creating '/tmp/pip-wheel-fowcwrhu/.tmp-dyb6tyqx/galaxy_app-23.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-23T18:25:41,568 adding 'galaxy/__init__.py' 2023-10-23T18:25:41,573 adding 'galaxy/app.py' 2023-10-23T18:25:41,575 adding 'galaxy/config_watchers.py' 2023-10-23T18:25:41,576 adding 'galaxy/di.py' 2023-10-23T18:25:41,578 adding 'galaxy/main.py' 2023-10-23T18:25:41,580 adding 'galaxy/main_config.py' 2023-10-23T18:25:41,582 adding 'galaxy/py.typed' 2023-10-23T18:25:41,584 adding 'galaxy/queue_worker.py' 2023-10-23T18:25:41,586 adding 'galaxy/queues.py' 2023-10-23T18:25:41,588 adding 'galaxy/structured_app.py' 2023-10-23T18:25:41,590 adding 'galaxy/actions/__init__.py' 2023-10-23T18:25:41,592 adding 'galaxy/actions/library.py' 2023-10-23T18:25:41,594 adding 'galaxy/app_unittest_utils/__init__.py' 2023-10-23T18:25:41,597 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2023-10-23T18:25:41,598 adding 'galaxy/app_unittest_utils/tools_support.py' 2023-10-23T18:25:41,601 adding 'galaxy/authnz/__init__.py' 2023-10-23T18:25:41,603 adding 'galaxy/authnz/custos_authnz.py' 2023-10-23T18:25:41,607 adding 'galaxy/authnz/managers.py' 2023-10-23T18:25:41,610 adding 'galaxy/authnz/psa_authnz.py' 2023-10-23T18:25:41,612 adding 'galaxy/celery/__init__.py' 2023-10-23T18:25:41,614 adding 'galaxy/celery/_serialization.py' 2023-10-23T18:25:41,617 adding 'galaxy/celery/tasks.py' 2023-10-23T18:25:41,619 adding 'galaxy/dependencies/__init__.py' 2023-10-23T18:25:41,621 adding 'galaxy/dependencies/conditional-requirements.txt' 2023-10-23T18:25:41,623 adding 'galaxy/dependencies/dev-requirements.txt' 2023-10-23T18:25:41,625 adding 'galaxy/dependencies/lint-requirements.txt' 2023-10-23T18:25:41,626 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2023-10-23T18:25:41,628 adding 'galaxy/dependencies/pinned-requirements.txt' 2023-10-23T18:25:41,629 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2023-10-23T18:25:41,631 adding 'galaxy/dependencies/typecheck-requirements.txt' 2023-10-23T18:25:41,632 adding 'galaxy/dependencies/update.sh' 2023-10-23T18:25:41,634 adding 'galaxy/dependencies/update_lint_requirements.sh' 2023-10-23T18:25:41,636 adding 'galaxy/forms/__init__.py' 2023-10-23T18:25:41,637 adding 'galaxy/forms/forms.py' 2023-10-23T18:25:41,653 adding 'galaxy/jobs/__init__.py' 2023-10-23T18:25:41,656 adding 'galaxy/jobs/command_factory.py' 2023-10-23T18:25:41,664 adding 'galaxy/jobs/dynamic_tool_destination.py' 2023-10-23T18:25:41,672 adding 'galaxy/jobs/handler.py' 2023-10-23T18:25:41,674 adding 'galaxy/jobs/manager.py' 2023-10-23T18:25:41,676 adding 'galaxy/jobs/mapper.py' 2023-10-23T18:25:41,678 adding 'galaxy/jobs/rule_helper.py' 2023-10-23T18:25:41,679 adding 'galaxy/jobs/stock_rules.py' 2023-10-23T18:25:41,681 adding 'galaxy/jobs/rules/__init__.py' 2023-10-23T18:25:41,687 adding 'galaxy/jobs/runners/__init__.py' 2023-10-23T18:25:41,690 adding 'galaxy/jobs/runners/aws.py' 2023-10-23T18:25:41,692 adding 'galaxy/jobs/runners/chronos.py' 2023-10-23T18:25:41,695 adding 'galaxy/jobs/runners/cli.py' 2023-10-23T18:25:41,697 adding 'galaxy/jobs/runners/condor.py' 2023-10-23T18:25:41,700 adding 'galaxy/jobs/runners/drmaa.py' 2023-10-23T18:25:41,703 adding 'galaxy/jobs/runners/godocker.py' 2023-10-23T18:25:41,708 adding 'galaxy/jobs/runners/kubernetes.py' 2023-10-23T18:25:41,711 adding 'galaxy/jobs/runners/local.py' 2023-10-23T18:25:41,714 adding 'galaxy/jobs/runners/pbs.py' 2023-10-23T18:25:41,720 adding 'galaxy/jobs/runners/pulsar.py' 2023-10-23T18:25:41,723 adding 'galaxy/jobs/runners/slurm.py' 2023-10-23T18:25:41,724 adding 'galaxy/jobs/runners/state_handler_factory.py' 2023-10-23T18:25:41,726 adding 'galaxy/jobs/runners/tasks.py' 2023-10-23T18:25:41,730 adding 'galaxy/jobs/runners/univa.py' 2023-10-23T18:25:41,732 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2023-10-23T18:25:41,734 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2023-10-23T18:25:41,736 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2023-10-23T18:25:41,738 adding 'galaxy/jobs/runners/util/__init__.py' 2023-10-23T18:25:41,740 adding 'galaxy/jobs/runners/util/env.py' 2023-10-23T18:25:41,741 adding 'galaxy/jobs/runners/util/external.py' 2023-10-23T18:25:41,743 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2023-10-23T18:25:41,744 adding 'galaxy/jobs/runners/util/kill.py' 2023-10-23T18:25:41,746 adding 'galaxy/jobs/runners/util/process_groups.py' 2023-10-23T18:25:41,748 adding 'galaxy/jobs/runners/util/pykube_util.py' 2023-10-23T18:25:41,749 adding 'galaxy/jobs/runners/util/sudo.py' 2023-10-23T18:25:41,751 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2023-10-23T18:25:41,753 adding 'galaxy/jobs/runners/util/cli/factory.py' 2023-10-23T18:25:41,755 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2023-10-23T18:25:41,757 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2023-10-23T18:25:41,758 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2023-10-23T18:25:41,760 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2023-10-23T18:25:41,761 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2023-10-23T18:25:41,763 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2023-10-23T18:25:41,765 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2023-10-23T18:25:41,766 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2023-10-23T18:25:41,768 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2023-10-23T18:25:41,770 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2023-10-23T18:25:41,773 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2023-10-23T18:25:41,774 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2023-10-23T18:25:41,776 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2023-10-23T18:25:41,778 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2023-10-23T18:25:41,780 adding 'galaxy/jobs/splitters/__init__.py' 2023-10-23T18:25:41,781 adding 'galaxy/jobs/splitters/basic.py' 2023-10-23T18:25:41,783 adding 'galaxy/jobs/splitters/multi.py' 2023-10-23T18:25:41,786 adding 'galaxy/managers/__init__.py' 2023-10-23T18:25:41,787 adding 'galaxy/managers/annotatable.py' 2023-10-23T18:25:41,788 adding 'galaxy/managers/api_keys.py' 2023-10-23T18:25:41,796 adding 'galaxy/managers/base.py' 2023-10-23T18:25:41,798 adding 'galaxy/managers/citations.py' 2023-10-23T18:25:41,801 adding 'galaxy/managers/cloud.py' 2023-10-23T18:25:41,802 adding 'galaxy/managers/cloudauthzs.py' 2023-10-23T18:25:41,807 adding 'galaxy/managers/collections.py' 2023-10-23T18:25:41,809 adding 'galaxy/managers/collections_util.py' 2023-10-23T18:25:41,811 adding 'galaxy/managers/configuration.py' 2023-10-23T18:25:41,813 adding 'galaxy/managers/context.py' 2023-10-23T18:25:41,818 adding 'galaxy/managers/datasets.py' 2023-10-23T18:25:41,820 adding 'galaxy/managers/datatypes.py' 2023-10-23T18:25:41,822 adding 'galaxy/managers/deletable.py' 2023-10-23T18:25:41,823 adding 'galaxy/managers/display_applications.py' 2023-10-23T18:25:41,825 adding 'galaxy/managers/executables.py' 2023-10-23T18:25:41,826 adding 'galaxy/managers/export_tracker.py' 2023-10-23T18:25:41,829 adding 'galaxy/managers/folders.py' 2023-10-23T18:25:41,831 adding 'galaxy/managers/genomes.py' 2023-10-23T18:25:41,833 adding 'galaxy/managers/group_roles.py' 2023-10-23T18:25:41,834 adding 'galaxy/managers/group_users.py' 2023-10-23T18:25:41,836 adding 'galaxy/managers/groups.py' 2023-10-23T18:25:41,839 adding 'galaxy/managers/hdas.py' 2023-10-23T18:25:41,841 adding 'galaxy/managers/hdcas.py' 2023-10-23T18:25:41,845 adding 'galaxy/managers/histories.py' 2023-10-23T18:25:41,848 adding 'galaxy/managers/history_contents.py' 2023-10-23T18:25:41,851 adding 'galaxy/managers/interactivetool.py' 2023-10-23T18:25:41,852 adding 'galaxy/managers/job_connections.py' 2023-10-23T18:25:41,857 adding 'galaxy/managers/jobs.py' 2023-10-23T18:25:41,859 adding 'galaxy/managers/lddas.py' 2023-10-23T18:25:41,862 adding 'galaxy/managers/libraries.py' 2023-10-23T18:25:41,864 adding 'galaxy/managers/library_datasets.py' 2023-10-23T18:25:41,875 adding 'galaxy/managers/licenses.json' 2023-10-23T18:25:41,878 adding 'galaxy/managers/licenses.py' 2023-10-23T18:25:41,879 adding 'galaxy/managers/markdown_export_base.css' 2023-10-23T18:25:41,881 adding 'galaxy/managers/markdown_parse.py' 2023-10-23T18:25:41,885 adding 'galaxy/managers/markdown_util.py' 2023-10-23T18:25:41,887 adding 'galaxy/managers/metrics.py' 2023-10-23T18:25:41,889 adding 'galaxy/managers/model_stores.py' 2023-10-23T18:25:41,891 adding 'galaxy/managers/pages.py' 2023-10-23T18:25:41,893 adding 'galaxy/managers/quotas.py' 2023-10-23T18:25:41,895 adding 'galaxy/managers/ratable.py' 2023-10-23T18:25:41,897 adding 'galaxy/managers/rbac_secured.py' 2023-10-23T18:25:41,898 adding 'galaxy/managers/remote_files.py' 2023-10-23T18:25:41,899 adding 'galaxy/managers/roles.py' 2023-10-23T18:25:41,901 adding 'galaxy/managers/secured.py' 2023-10-23T18:25:41,902 adding 'galaxy/managers/session.py' 2023-10-23T18:25:41,905 adding 'galaxy/managers/sharable.py' 2023-10-23T18:25:41,907 adding 'galaxy/managers/taggable.py' 2023-10-23T18:25:41,908 adding 'galaxy/managers/tags.py' 2023-10-23T18:25:41,909 adding 'galaxy/managers/tasks.py' 2023-10-23T18:25:41,911 adding 'galaxy/managers/tool_data.py' 2023-10-23T18:25:41,913 adding 'galaxy/managers/tools.py' 2023-10-23T18:25:41,917 adding 'galaxy/managers/users.py' 2023-10-23T18:25:41,918 adding 'galaxy/managers/visualizations.py' 2023-10-23T18:25:41,929 adding 'galaxy/managers/workflows.py' 2023-10-23T18:25:41,931 adding 'galaxy/tool_shed/__init__.py' 2023-10-23T18:25:41,933 adding 'galaxy/tool_shed/cache.py' 2023-10-23T18:25:41,934 adding 'galaxy/tool_shed/repository_type.py' 2023-10-23T18:25:41,936 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2023-10-23T18:25:41,941 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2023-10-23T18:25:41,947 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2023-10-23T18:25:41,949 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2023-10-23T18:25:41,951 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2023-10-23T18:25:41,953 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2023-10-23T18:25:41,954 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2023-10-23T18:25:41,958 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2023-10-23T18:25:41,960 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2023-10-23T18:25:41,962 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2023-10-23T18:25:41,966 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2023-10-23T18:25:41,968 adding 'galaxy/tool_shed/metadata/__init__.py' 2023-10-23T18:25:41,974 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2023-10-23T18:25:41,976 adding 'galaxy/tool_shed/tools/__init__.py' 2023-10-23T18:25:41,978 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2023-10-23T18:25:41,979 adding 'galaxy/tool_shed/tools/tool_validator.py' 2023-10-23T18:25:41,981 adding 'galaxy/tool_shed/util/__init__.py' 2023-10-23T18:25:41,982 adding 'galaxy/tool_shed/util/basic_util.py' 2023-10-23T18:25:41,984 adding 'galaxy/tool_shed/util/container_util.py' 2023-10-23T18:25:41,986 adding 'galaxy/tool_shed/util/dependency_display.py' 2023-10-23T18:25:41,988 adding 'galaxy/tool_shed/util/hg_util.py' 2023-10-23T18:25:41,989 adding 'galaxy/tool_shed/util/metadata_util.py' 2023-10-23T18:25:41,993 adding 'galaxy/tool_shed/util/repository_util.py' 2023-10-23T18:25:41,995 adding 'galaxy/tool_shed/util/shed_util_common.py' 2023-10-23T18:25:41,998 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2023-10-23T18:25:42,000 adding 'galaxy/tool_shed/util/tool_util.py' 2023-10-23T18:25:42,004 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2023-10-23T18:25:42,026 adding 'galaxy/tools/__init__.py' 2023-10-23T18:25:42,028 adding 'galaxy/tools/apply_rules.xml' 2023-10-23T18:25:42,030 adding 'galaxy/tools/biotools.py' 2023-10-23T18:25:42,031 adding 'galaxy/tools/build_list.xml' 2023-10-23T18:25:42,033 adding 'galaxy/tools/build_list_1.2.0.xml' 2023-10-23T18:25:42,034 adding 'galaxy/tools/cache.py' 2023-10-23T18:25:42,038 adding 'galaxy/tools/data_fetch.py' 2023-10-23T18:25:42,039 adding 'galaxy/tools/data_fetch.xml' 2023-10-23T18:25:42,041 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2023-10-23T18:25:42,043 adding 'galaxy/tools/errors.py' 2023-10-23T18:25:42,048 adding 'galaxy/tools/evaluation.py' 2023-10-23T18:25:42,082 adding 'galaxy/tools/exception_handling.py' 2023-10-23T18:25:42,086 adding 'galaxy/tools/execute.py' 2023-10-23T18:25:42,087 adding 'galaxy/tools/extract_dataset.xml' 2023-10-23T18:25:42,088 adding 'galaxy/tools/filter_empty_collection.xml' 2023-10-23T18:25:42,090 adding 'galaxy/tools/filter_failed_collection.xml' 2023-10-23T18:25:42,091 adding 'galaxy/tools/filter_from_file.xml' 2023-10-23T18:25:42,093 adding 'galaxy/tools/flatten_collection.xml' 2023-10-23T18:25:42,095 adding 'galaxy/tools/merge_collection.xml' 2023-10-23T18:25:42,097 adding 'galaxy/tools/recommendations.py' 2023-10-23T18:25:42,099 adding 'galaxy/tools/relabel_from_file.xml' 2023-10-23T18:25:42,101 adding 'galaxy/tools/remote_tool_eval.py' 2023-10-23T18:25:42,102 adding 'galaxy/tools/repositories.py' 2023-10-23T18:25:42,104 adding 'galaxy/tools/sort_collection_list.xml' 2023-10-23T18:25:42,106 adding 'galaxy/tools/special_tools.py' 2023-10-23T18:25:42,107 adding 'galaxy/tools/tag_collection_from_file.xml' 2023-10-23T18:25:42,110 adding 'galaxy/tools/test.py' 2023-10-23T18:25:42,111 adding 'galaxy/tools/unzip_collection.xml' 2023-10-23T18:25:42,115 adding 'galaxy/tools/wrappers.py' 2023-10-23T18:25:42,117 adding 'galaxy/tools/zip_collection.xml' 2023-10-23T18:25:42,125 adding 'galaxy/tools/actions/__init__.py' 2023-10-23T18:25:42,126 adding 'galaxy/tools/actions/data_manager.py' 2023-10-23T18:25:42,128 adding 'galaxy/tools/actions/data_source.py' 2023-10-23T18:25:42,129 adding 'galaxy/tools/actions/history_imp_exp.py' 2023-10-23T18:25:42,131 adding 'galaxy/tools/actions/metadata.py' 2023-10-23T18:25:42,132 adding 'galaxy/tools/actions/model_operations.py' 2023-10-23T18:25:42,134 adding 'galaxy/tools/actions/upload.py' 2023-10-23T18:25:42,137 adding 'galaxy/tools/actions/upload_common.py' 2023-10-23T18:25:42,139 adding 'galaxy/tools/bundled/__init__.py' 2023-10-23T18:25:42,140 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2023-10-23T18:25:42,142 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2023-10-23T18:25:42,143 adding 'galaxy/tools/bundled/data_export/send.py' 2023-10-23T18:25:42,145 adding 'galaxy/tools/bundled/data_export/send.xml' 2023-10-23T18:25:42,147 adding 'galaxy/tools/bundled/data_source/__init__.py' 2023-10-23T18:25:42,148 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2023-10-23T18:25:42,149 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2023-10-23T18:25:42,151 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2023-10-23T18:25:42,152 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2023-10-23T18:25:42,154 adding 'galaxy/tools/bundled/data_source/data_source.py' 2023-10-23T18:25:42,155 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2023-10-23T18:25:42,156 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2023-10-23T18:25:42,157 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2023-10-23T18:25:42,158 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2023-10-23T18:25:42,160 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2023-10-23T18:25:42,161 adding 'galaxy/tools/bundled/data_source/genbank.py' 2023-10-23T18:25:42,162 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2023-10-23T18:25:42,163 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2023-10-23T18:25:42,165 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2023-10-23T18:25:42,166 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2023-10-23T18:25:42,167 adding 'galaxy/tools/bundled/data_source/import.py' 2023-10-23T18:25:42,168 adding 'galaxy/tools/bundled/data_source/import.xml' 2023-10-23T18:25:42,170 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2023-10-23T18:25:42,171 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2023-10-23T18:25:42,172 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2023-10-23T18:25:42,174 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2023-10-23T18:25:42,175 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2023-10-23T18:25:42,177 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2023-10-23T18:25:42,178 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2023-10-23T18:25:42,179 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2023-10-23T18:25:42,181 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2023-10-23T18:25:42,182 adding 'galaxy/tools/bundled/data_source/sra.xml' 2023-10-23T18:25:42,183 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2023-10-23T18:25:42,185 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2023-10-23T18:25:42,186 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2023-10-23T18:25:42,188 adding 'galaxy/tools/bundled/data_source/upload.py' 2023-10-23T18:25:42,190 adding 'galaxy/tools/bundled/data_source/upload.xml' 2023-10-23T18:25:42,192 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2023-10-23T18:25:42,193 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2023-10-23T18:25:42,194 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2023-10-23T18:25:42,196 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2023-10-23T18:25:42,197 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2023-10-23T18:25:42,199 adding 'galaxy/tools/bundled/evolution/__init__.py' 2023-10-23T18:25:42,200 adding 'galaxy/tools/bundled/evolution/add_scores.py' 2023-10-23T18:25:42,201 adding 'galaxy/tools/bundled/evolution/add_scores.xml' 2023-10-23T18:25:42,204 adding 'galaxy/tools/bundled/evolution/codingSnps.pl' 2023-10-23T18:25:42,206 adding 'galaxy/tools/bundled/evolution/codingSnps.xml' 2023-10-23T18:25:42,207 adding 'galaxy/tools/bundled/evolution/codingSnps_filter.py' 2023-10-23T18:25:42,209 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2023-10-23T18:25:42,210 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2023-10-23T18:25:42,212 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2023-10-23T18:25:42,213 adding 'galaxy/tools/bundled/extract/__init__.py' 2023-10-23T18:25:42,215 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2023-10-23T18:25:42,217 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2023-10-23T18:25:42,218 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2023-10-23T18:25:42,220 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2023-10-23T18:25:42,223 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2023-10-23T18:25:42,224 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2023-10-23T18:25:42,225 adding 'galaxy/tools/bundled/filters/__init__.py' 2023-10-23T18:25:42,226 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2023-10-23T18:25:42,228 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2023-10-23T18:25:42,229 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2023-10-23T18:25:42,230 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2023-10-23T18:25:42,232 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2023-10-23T18:25:42,233 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2023-10-23T18:25:42,234 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2023-10-23T18:25:42,236 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2023-10-23T18:25:42,237 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2023-10-23T18:25:42,238 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2023-10-23T18:25:42,240 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2023-10-23T18:25:42,241 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2023-10-23T18:25:42,242 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2023-10-23T18:25:42,244 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2023-10-23T18:25:42,245 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2023-10-23T18:25:42,246 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2023-10-23T18:25:42,247 adding 'galaxy/tools/bundled/filters/compare.xml' 2023-10-23T18:25:42,249 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2023-10-23T18:25:42,250 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2023-10-23T18:25:42,251 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2023-10-23T18:25:42,253 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2023-10-23T18:25:42,254 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2023-10-23T18:25:42,256 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2023-10-23T18:25:42,257 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2023-10-23T18:25:42,258 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2023-10-23T18:25:42,259 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2023-10-23T18:25:42,261 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2023-10-23T18:25:42,263 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2023-10-23T18:25:42,264 adding 'galaxy/tools/bundled/filters/grep.py' 2023-10-23T18:25:42,266 adding 'galaxy/tools/bundled/filters/grep.xml' 2023-10-23T18:25:42,267 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2023-10-23T18:25:42,269 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2023-10-23T18:25:42,270 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2023-10-23T18:25:42,271 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2023-10-23T18:25:42,274 adding 'galaxy/tools/bundled/filters/join.py' 2023-10-23T18:25:42,275 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2023-10-23T18:25:42,276 adding 'galaxy/tools/bundled/filters/joiner.xml' 2023-10-23T18:25:42,278 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2023-10-23T18:25:42,279 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2023-10-23T18:25:42,280 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2023-10-23T18:25:42,281 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2023-10-23T18:25:42,282 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2023-10-23T18:25:42,284 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2023-10-23T18:25:42,285 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2023-10-23T18:25:42,286 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2023-10-23T18:25:42,288 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2023-10-23T18:25:42,289 adding 'galaxy/tools/bundled/filters/randomlines.py' 2023-10-23T18:25:42,290 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2023-10-23T18:25:42,291 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2023-10-23T18:25:42,292 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2023-10-23T18:25:42,294 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2023-10-23T18:25:42,295 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2023-10-23T18:25:42,301 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2023-10-23T18:25:42,303 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2023-10-23T18:25:42,304 adding 'galaxy/tools/bundled/filters/sorter.py' 2023-10-23T18:25:42,306 adding 'galaxy/tools/bundled/filters/sorter.xml' 2023-10-23T18:25:42,307 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2023-10-23T18:25:42,309 adding 'galaxy/tools/bundled/filters/trimmer.py' 2023-10-23T18:25:42,310 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2023-10-23T18:25:42,312 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2023-10-23T18:25:42,313 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2023-10-23T18:25:42,315 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2023-10-23T18:25:42,316 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2023-10-23T18:25:42,318 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2023-10-23T18:25:42,319 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2023-10-23T18:25:42,320 adding 'galaxy/tools/bundled/filters/uniq.py' 2023-10-23T18:25:42,322 adding 'galaxy/tools/bundled/filters/uniq.xml' 2023-10-23T18:25:42,323 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2023-10-23T18:25:42,325 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2023-10-23T18:25:42,326 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2023-10-23T18:25:42,328 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2023-10-23T18:25:42,330 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2023-10-23T18:25:42,331 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2023-10-23T18:25:42,333 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2023-10-23T18:25:42,335 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2023-10-23T18:25:42,337 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2023-10-23T18:25:42,338 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2023-10-23T18:25:42,340 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2023-10-23T18:25:42,341 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2023-10-23T18:25:42,343 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2023-10-23T18:25:42,345 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2023-10-23T18:25:42,347 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2023-10-23T18:25:42,348 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2023-10-23T18:25:42,349 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml' 2023-10-23T18:25:42,351 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2023-10-23T18:25:42,352 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2023-10-23T18:25:42,353 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2023-10-23T18:25:42,355 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2023-10-23T18:25:42,356 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2023-10-23T18:25:42,358 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2023-10-23T18:25:42,359 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2023-10-23T18:25:42,361 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2023-10-23T18:25:42,363 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2023-10-23T18:25:42,365 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2023-10-23T18:25:42,367 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2023-10-23T18:25:42,368 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2023-10-23T18:25:42,370 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2023-10-23T18:25:42,371 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2023-10-23T18:25:42,373 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2023-10-23T18:25:42,374 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2023-10-23T18:25:42,375 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2023-10-23T18:25:42,376 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2023-10-23T18:25:42,378 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2023-10-23T18:25:42,379 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2023-10-23T18:25:42,381 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2023-10-23T18:25:42,382 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2023-10-23T18:25:42,383 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2023-10-23T18:25:42,385 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2023-10-23T18:25:42,386 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2023-10-23T18:25:42,387 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2023-10-23T18:25:42,389 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2023-10-23T18:25:42,392 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2023-10-23T18:25:42,394 adding 'galaxy/tools/bundled/interactive/isee/render.py' 2023-10-23T18:25:42,396 adding 'galaxy/tools/bundled/maf/__init__.py' 2023-10-23T18:25:42,398 adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml' 2023-10-23T18:25:42,400 adding 'galaxy/tools/bundled/maf/interval2maf.py' 2023-10-23T18:25:42,402 adding 'galaxy/tools/bundled/maf/interval2maf.xml' 2023-10-23T18:25:42,403 adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml' 2023-10-23T18:25:42,405 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py' 2023-10-23T18:25:42,407 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2023-10-23T18:25:42,408 adding 'galaxy/tools/bundled/maf/macros.xml' 2023-10-23T18:25:42,409 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2023-10-23T18:25:42,410 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2023-10-23T18:25:42,412 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2023-10-23T18:25:42,414 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2023-10-23T18:25:42,415 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2023-10-23T18:25:42,416 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2023-10-23T18:25:42,418 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2023-10-23T18:25:42,419 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2023-10-23T18:25:42,420 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2023-10-23T18:25:42,421 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2023-10-23T18:25:42,423 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2023-10-23T18:25:42,424 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2023-10-23T18:25:42,426 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2023-10-23T18:25:42,427 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2023-10-23T18:25:42,429 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 2023-10-23T18:25:42,430 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml' 2023-10-23T18:25:42,431 adding 'galaxy/tools/bundled/maf/maf_to_bed.py' 2023-10-23T18:25:42,433 adding 'galaxy/tools/bundled/maf/maf_to_bed.xml' 2023-10-23T18:25:42,434 adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py' 2023-10-23T18:25:42,436 adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml' 2023-10-23T18:25:42,437 adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py' 2023-10-23T18:25:42,438 adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py' 2023-10-23T18:25:42,440 adding 'galaxy/tools/bundled/maf/maf_to_interval.py' 2023-10-23T18:25:42,441 adding 'galaxy/tools/bundled/maf/maf_to_interval.xml' 2023-10-23T18:25:42,443 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py' 2023-10-23T18:25:42,444 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml' 2023-10-23T18:25:42,446 adding 'galaxy/tools/bundled/meme/__init__.py' 2023-10-23T18:25:42,448 adding 'galaxy/tools/bundled/meme/fimo.xml' 2023-10-23T18:25:42,449 adding 'galaxy/tools/bundled/meme/fimo_wrapper.py' 2023-10-23T18:25:42,451 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removing build/bdist.linux-armv7l/wheel 2023-10-23T18:25:43,092 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2023-10-23T18:25:43,124 Created wheel for galaxy-app: filename=galaxy_app-23.0.6-py3-none-any.whl size=1385298 sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 2023-10-23T18:25:43,125 Stored in directory: /tmp/pip-ephem-wheel-cache-cyk3_duo/wheels/a9/74/f3/847b6ee3751c025d1fefe4c4c08dca37ca85fafc278b613f3b 2023-10-23T18:25:43,155 Successfully built galaxy-app 2023-10-23T18:25:43,191 Removed build tracker: '/tmp/pip-build-tracker-tgn40hga'