2023-10-23T20:40:36,548 Created temporary directory: /tmp/pip-build-tracker-mwd5bt1y
2023-10-23T20:40:36,549 Initialized build tracking at /tmp/pip-build-tracker-mwd5bt1y
2023-10-23T20:40:36,550 Created build tracker: /tmp/pip-build-tracker-mwd5bt1y
2023-10-23T20:40:36,550 Entered build tracker: /tmp/pip-build-tracker-mwd5bt1y
2023-10-23T20:40:36,551 Created temporary directory: /tmp/pip-wheel-7pj779dn
2023-10-23T20:40:36,554 Created temporary directory: /tmp/pip-ephem-wheel-cache-yr9lkat8
2023-10-23T20:40:36,577 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-23T20:40:36,580 2 location(s) to search for versions of galaxy-app:
2023-10-23T20:40:36,580 * https://pypi.org/simple/galaxy-app/
2023-10-23T20:40:36,580 * https://www.piwheels.org/simple/galaxy-app/
2023-10-23T20:40:36,581 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/
2023-10-23T20:40:36,582 Getting page https://pypi.org/simple/galaxy-app/
2023-10-23T20:40:36,584 Found index url https://pypi.org/simple/
2023-10-23T20:40:36,804 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json
2023-10-23T20:40:36,810   Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0
2023-10-23T20:40:36,810   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2023-10-23T20:40:36,811   Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0
2023-10-23T20:40:36,812   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2023-10-23T20:40:36,813   Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0
2023-10-23T20:40:36,813   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2023-10-23T20:40:36,814   Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1
2023-10-23T20:40:36,815   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2023-10-23T20:40:36,816   Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1
2023-10-23T20:40:36,817   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,817   Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2
2023-10-23T20:40:36,818   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,819   Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3
2023-10-23T20:40:36,820   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,821   Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4
2023-10-23T20:40:36,822   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,822   Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5
2023-10-23T20:40:36,823   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,824   Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6
2023-10-23T20:40:36,824   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,825   Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1
2023-10-23T20:40:36,826   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:36,827 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/
2023-10-23T20:40:36,828 Getting page https://www.piwheels.org/simple/galaxy-app/
2023-10-23T20:40:36,829 Found index url https://www.piwheels.org/simple/
2023-10-23T20:40:37,007 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html
2023-10-23T20:40:37,011   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:37,011   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:37,012   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:37,013   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:37,013   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:37,014   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2023-10-23T20:40:37,014   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/)
2023-10-23T20:40:37,015   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/)
2023-10-23T20:40:37,015 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/
2023-10-23T20:40:37,016 Skipping link: not a file: https://pypi.org/simple/galaxy-app/
2023-10-23T20:40:37,037 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates
2023-10-23T20:40:37,056 Collecting galaxy-app==23.1.1
2023-10-23T20:40:37,059   Created temporary directory: /tmp/pip-unpack-ox40d4o8
2023-10-23T20:40:37,285   Downloading galaxy-app-23.1.1.tar.gz (1.1 MB)
2023-10-23T20:40:38,643   Added galaxy-app==23.1.1 from https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-mwd5bt1y'
2023-10-23T20:40:38,647   Created temporary directory: /tmp/pip-build-env-3nl10e1b
2023-10-23T20:40:38,651   Installing build dependencies: started
2023-10-23T20:40:38,652   Running command pip subprocess to install build dependencies
2023-10-23T20:40:39,828   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-10-23T20:40:40,358   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-23T20:40:41,809   Collecting setuptools
2023-10-23T20:40:41,824     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-10-23T20:40:44,531   Installing collected packages: setuptools
2023-10-23T20:40:46,800   Successfully installed setuptools-68.2.2
2023-10-23T20:40:47,291   Installing build dependencies: finished with status 'done'
2023-10-23T20:40:47,295   Getting requirements to build wheel: started
2023-10-23T20:40:47,296   Running command Getting requirements to build wheel
2023-10-23T20:40:47,936   running egg_info
2023-10-23T20:40:47,939   writing galaxy_app.egg-info/PKG-INFO
2023-10-23T20:40:47,944   writing dependency_links to galaxy_app.egg-info/dependency_links.txt
2023-10-23T20:40:47,946   writing entry points to galaxy_app.egg-info/entry_points.txt
2023-10-23T20:40:47,948   writing requirements to galaxy_app.egg-info/requires.txt
2023-10-23T20:40:47,950   writing top-level names to galaxy_app.egg-info/top_level.txt
2023-10-23T20:40:48,001   reading manifest file 'galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:48,051   reading manifest template 'MANIFEST.in'
2023-10-23T20:40:48,583   adding license file 'LICENSE'
2023-10-23T20:40:48,609   writing manifest file 'galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:48,687   Getting requirements to build wheel: finished with status 'done'
2023-10-23T20:40:48,695   Installing backend dependencies: started
2023-10-23T20:40:48,697   Running command pip subprocess to install backend dependencies
2023-10-23T20:40:49,880   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-10-23T20:40:50,408   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-23T20:40:50,927   Collecting wheel
2023-10-23T20:40:50,942     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-10-23T20:40:53,322   Installing collected packages: wheel
2023-10-23T20:40:53,543     Creating /tmp/pip-build-env-3nl10e1b/normal/local/bin
2023-10-23T20:40:53,545     changing mode of /tmp/pip-build-env-3nl10e1b/normal/local/bin/wheel to 755
2023-10-23T20:40:53,557   Successfully installed wheel-0.41.2
2023-10-23T20:40:54,017   Installing backend dependencies: finished with status 'done'
2023-10-23T20:40:54,019   Created temporary directory: /tmp/pip-modern-metadata-w_rjxkwk
2023-10-23T20:40:54,021   Preparing metadata (pyproject.toml): started
2023-10-23T20:40:54,022   Running command Preparing metadata (pyproject.toml)
2023-10-23T20:40:54,584   running dist_info
2023-10-23T20:40:54,604   creating /tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info
2023-10-23T20:40:54,608   writing /tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/PKG-INFO
2023-10-23T20:40:54,614   writing dependency_links to /tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/dependency_links.txt
2023-10-23T20:40:54,616   writing entry points to /tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/entry_points.txt
2023-10-23T20:40:54,617   writing requirements to /tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/requires.txt
2023-10-23T20:40:54,619   writing top-level names to /tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/top_level.txt
2023-10-23T20:40:54,620   writing manifest file '/tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:54,696   reading manifest file '/tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:54,698   reading manifest template 'MANIFEST.in'
2023-10-23T20:40:55,208   adding license file 'LICENSE'
2023-10-23T20:40:55,227   writing manifest file '/tmp/pip-modern-metadata-w_rjxkwk/galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:55,229   creating '/tmp/pip-modern-metadata-w_rjxkwk/galaxy_app-23.1.1.dist-info'
2023-10-23T20:40:55,424   Preparing metadata (pyproject.toml): finished with status 'done'
2023-10-23T20:40:55,430   Source in /tmp/pip-wheel-7pj779dn/galaxy-app_227c942ba48f48c1bcfd0cd1629e8669 has version 23.1.1, which satisfies requirement galaxy-app==23.1.1 from https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz
2023-10-23T20:40:55,431   Removed galaxy-app==23.1.1 from https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-mwd5bt1y'
2023-10-23T20:40:55,439 Created temporary directory: /tmp/pip-unpack-91uf8bee
2023-10-23T20:40:55,440 Created temporary directory: /tmp/pip-unpack-_okolv99
2023-10-23T20:40:55,487 Building wheels for collected packages: galaxy-app
2023-10-23T20:40:55,491   Created temporary directory: /tmp/pip-wheel-cj4u7686
2023-10-23T20:40:55,492   Destination directory: /tmp/pip-wheel-cj4u7686
2023-10-23T20:40:55,494   Building wheel for galaxy-app (pyproject.toml): started
2023-10-23T20:40:55,495   Running command Building wheel for galaxy-app (pyproject.toml)
2023-10-23T20:40:56,071   running bdist_wheel
2023-10-23T20:40:56,112   running build
2023-10-23T20:40:56,113   running build_py
2023-10-23T20:40:56,119   creating build
2023-10-23T20:40:56,120   creating build/lib
2023-10-23T20:40:56,120   creating build/lib/galaxy_ext
2023-10-23T20:40:56,122   copying galaxy_ext/__init__.py -> build/lib/galaxy_ext
2023-10-23T20:40:56,125   creating build/lib/tool_shed_client
2023-10-23T20:40:56,126   copying tool_shed_client/__init__.py -> build/lib/tool_shed_client
2023-10-23T20:40:56,128   creating build/lib/galaxy
2023-10-23T20:40:56,129   copying galaxy/queues.py -> build/lib/galaxy
2023-10-23T20:40:56,131   copying galaxy/main_config.py -> build/lib/galaxy
2023-10-23T20:40:56,133   copying galaxy/main.py -> build/lib/galaxy
2023-10-23T20:40:56,135   copying galaxy/di.py -> build/lib/galaxy
2023-10-23T20:40:56,137   copying galaxy/config_watchers.py -> build/lib/galaxy
2023-10-23T20:40:56,139   copying galaxy/__init__.py -> build/lib/galaxy
2023-10-23T20:40:56,140   copying galaxy/app.py -> build/lib/galaxy
2023-10-23T20:40:56,143   copying galaxy/structured_app.py -> build/lib/galaxy
2023-10-23T20:40:56,145   copying galaxy/queue_worker.py -> build/lib/galaxy
2023-10-23T20:40:56,148   creating build/lib/galaxy_ext/metadata
2023-10-23T20:40:56,149   copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata
2023-10-23T20:40:56,150   copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata
2023-10-23T20:40:56,152   creating build/lib/galaxy_ext/expressions
2023-10-23T20:40:56,153   copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions
2023-10-23T20:40:56,155   copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions
2023-10-23T20:40:56,157   creating build/lib/galaxy_ext/container_monitor
2023-10-23T20:40:56,158   copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor
2023-10-23T20:40:56,159   copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor
2023-10-23T20:40:56,162   creating build/lib/tool_shed_client/schema
2023-10-23T20:40:56,162   copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema
2023-10-23T20:40:56,165   creating build/lib/galaxy/work
2023-10-23T20:40:56,166   copying galaxy/work/context.py -> build/lib/galaxy/work
2023-10-23T20:40:56,168   copying galaxy/work/__init__.py -> build/lib/galaxy/work
2023-10-23T20:40:56,170   creating build/lib/galaxy/actions
2023-10-23T20:40:56,171   copying galaxy/actions/__init__.py -> build/lib/galaxy/actions
2023-10-23T20:40:56,172   copying galaxy/actions/library.py -> build/lib/galaxy/actions
2023-10-23T20:40:56,175   creating build/lib/galaxy/forms
2023-10-23T20:40:56,176   copying galaxy/forms/forms.py -> build/lib/galaxy/forms
2023-10-23T20:40:56,179   copying galaxy/forms/__init__.py -> build/lib/galaxy/forms
2023-10-23T20:40:56,181   creating build/lib/galaxy/jobs
2023-10-23T20:40:56,182   copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,185   copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,187   copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,190   copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,192   copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,194   copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,199   copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,203   copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs
2023-10-23T20:40:56,205   creating build/lib/galaxy/tools
2023-10-23T20:40:56,206   copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,210   copying galaxy/tools/biotools.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,211   copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,213   copying galaxy/tools/errors.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,215   copying galaxy/tools/execute.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,218   copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,221   copying galaxy/tools/cache.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,223   copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,225   copying galaxy/tools/__init__.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,231   copying galaxy/tools/test.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,234   copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,236   copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,239   copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,241   copying galaxy/tools/repositories.py -> build/lib/galaxy/tools
2023-10-23T20:40:56,243   creating build/lib/galaxy/tool_shed
2023-10-23T20:40:56,244   copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed
2023-10-23T20:40:56,246   copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed
2023-10-23T20:40:56,247   copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed
2023-10-23T20:40:56,249   creating build/lib/galaxy/app_unittest_utils
2023-10-23T20:40:56,250   copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils
2023-10-23T20:40:56,253   copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils
2023-10-23T20:40:56,254   copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils
2023-10-23T20:40:56,257   creating build/lib/galaxy/celery
2023-10-23T20:40:56,258   copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery
2023-10-23T20:40:56,259   copying galaxy/celery/tasks.py -> build/lib/galaxy/celery
2023-10-23T20:40:56,262   copying galaxy/celery/__init__.py -> build/lib/galaxy/celery
2023-10-23T20:40:56,264   creating build/lib/galaxy/visualization
2023-10-23T20:40:56,265   copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization
2023-10-23T20:40:56,267   copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization
2023-10-23T20:40:56,271   creating build/lib/galaxy/managers
2023-10-23T20:40:56,272   copying galaxy/managers/secured.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,274   copying galaxy/managers/roles.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,276   copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,278   copying galaxy/managers/collections.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,281   copying galaxy/managers/hdas.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,283   copying galaxy/managers/licenses.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,285   copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,287   copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,289   copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,292   copying galaxy/managers/pages.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,295   copying galaxy/managers/context.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,297   copying galaxy/managers/tools.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,299   copying galaxy/managers/notification.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,302   copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,304   copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,306   copying galaxy/managers/workflows.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,310   copying galaxy/managers/groups.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,313   copying galaxy/managers/libraries.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,315   copying galaxy/managers/genomes.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,317   copying galaxy/managers/tags.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,319   copying galaxy/managers/quotas.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,322   copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,324   copying galaxy/managers/cloud.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,327   copying galaxy/managers/configuration.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,329   copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,331   copying galaxy/managers/taggable.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,333   copying galaxy/managers/citations.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,335   copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,337   copying galaxy/managers/metrics.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,339   copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,341   copying galaxy/managers/group_users.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,343   copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,345   copying galaxy/managers/executables.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,347   copying galaxy/managers/lddas.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,348   copying galaxy/managers/base.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,352   copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,355   copying galaxy/managers/tasks.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,357   copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,359   copying galaxy/managers/users.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,362   copying galaxy/managers/__init__.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,364   copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,366   copying galaxy/managers/deletable.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,368   copying galaxy/managers/jobs.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,371   copying galaxy/managers/sharable.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,374   copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,376   copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,378   copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,380   copying galaxy/managers/session.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,382   copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,384   copying galaxy/managers/folders.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,387   copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,390   copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,392   copying galaxy/managers/ratable.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,394   copying galaxy/managers/datasets.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,397   copying galaxy/managers/histories.py -> build/lib/galaxy/managers
2023-10-23T20:40:56,400   creating build/lib/galaxy/dependencies
2023-10-23T20:40:56,401   copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies
2023-10-23T20:40:56,410   creating build/lib/galaxy/webhooks
2023-10-23T20:40:56,411   copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks
2023-10-23T20:40:56,413   creating build/lib/galaxy/workflow
2023-10-23T20:40:56,414   copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,417   copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,420   copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,422   copying galaxy/workflow/run.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,425   copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,427   copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,429   copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,433   copying galaxy/workflow/render.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,436   copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow
2023-10-23T20:40:56,439   creating build/lib/galaxy/authnz
2023-10-23T20:40:56,441   copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz
2023-10-23T20:40:56,444   copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz
2023-10-23T20:40:56,447   copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz
2023-10-23T20:40:56,449   copying galaxy/authnz/util.py -> build/lib/galaxy/authnz
2023-10-23T20:40:56,451   copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz
2023-10-23T20:40:56,455   creating build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,455   copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,458   copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,460   copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,463   copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,465   copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,468   copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,470   copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,473   copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,476   copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,478   copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,480   copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,483   copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,485   copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,487   copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,489   copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners
2023-10-23T20:40:56,491   creating build/lib/galaxy/jobs/rules
2023-10-23T20:40:56,492   copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules
2023-10-23T20:40:56,494   creating build/lib/galaxy/jobs/splitters
2023-10-23T20:40:56,495   copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters
2023-10-23T20:40:56,497   copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters
2023-10-23T20:40:56,499   copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters
2023-10-23T20:40:56,501   creating build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,502   copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,503   copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,505   copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,507   copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,509   copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,511   copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,512   copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,514   copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util
2023-10-23T20:40:56,516   creating build/lib/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:56,517   copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:56,519   copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:56,521   copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:56,523   creating build/lib/galaxy/jobs/runners/util/cli
2023-10-23T20:40:56,524   copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli
2023-10-23T20:40:56,527   copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli
2023-10-23T20:40:56,529   creating build/lib/galaxy/jobs/runners/util/condor
2023-10-23T20:40:56,530   copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor
2023-10-23T20:40:56,532   creating build/lib/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:56,533   copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:56,535   creating build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,536   copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,538   copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,539   copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,541   copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,543   copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,545   copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:56,547   creating build/lib/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:56,548   copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:56,550   copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:56,551   copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:56,553   creating build/lib/galaxy/tools/search
2023-10-23T20:40:56,555   copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search
2023-10-23T20:40:56,558   creating build/lib/galaxy/tools/actions
2023-10-23T20:40:56,558   copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,561   copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,563   copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,565   copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,566   copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,568   copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,571   copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,572   copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions
2023-10-23T20:40:56,575   creating build/lib/galaxy/tools/util
2023-10-23T20:40:56,576   copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util
2023-10-23T20:40:56,579   copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util
2023-10-23T20:40:56,581   creating build/lib/galaxy/tools/filters
2023-10-23T20:40:56,582   copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters
2023-10-23T20:40:56,584   creating build/lib/galaxy/tools/imp_exp
2023-10-23T20:40:56,585   copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp
2023-10-23T20:40:56,587   copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp
2023-10-23T20:40:56,589   copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp
2023-10-23T20:40:56,591   creating build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,592   copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,594   copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,596   copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,598   copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,601   copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,602   copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,605   copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,607   copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,609   copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,612   copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,614   copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,616   copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters
2023-10-23T20:40:56,620   creating build/lib/galaxy/tools/data
2023-10-23T20:40:56,621   copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data
2023-10-23T20:40:56,624   creating build/lib/galaxy/tools/data_manager
2023-10-23T20:40:56,625   copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager
2023-10-23T20:40:56,627   copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager
2023-10-23T20:40:56,629   creating build/lib/galaxy/tools/expressions
2023-10-23T20:40:56,630   copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions
2023-10-23T20:40:56,632   copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions
2023-10-23T20:40:56,633   copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions
2023-10-23T20:40:56,635   copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions
2023-10-23T20:40:56,637   creating build/lib/galaxy/tools/error_reports
2023-10-23T20:40:56,638   copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports
2023-10-23T20:40:56,640   creating build/lib/galaxy/tools/util/galaxyops
2023-10-23T20:40:56,641   copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops
2023-10-23T20:40:56,643   creating build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,644   copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,646   copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,647   copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,649   copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,651   copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,653   copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,655   copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,657   copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,658   copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins
2023-10-23T20:40:56,661   creating build/lib/galaxy/tool_shed/metadata
2023-10-23T20:40:56,662   copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata
2023-10-23T20:40:56,665   copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata
2023-10-23T20:40:56,667   creating build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,668   copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,671   copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,674   copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,675   copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,678   copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,680   copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,682   copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,683   copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,685   copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,687   copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,689   copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util
2023-10-23T20:40:56,691   creating build/lib/galaxy/tool_shed/tools
2023-10-23T20:40:56,692   copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools
2023-10-23T20:40:56,694   copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools
2023-10-23T20:40:56,695   copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools
2023-10-23T20:40:56,698   creating build/lib/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:56,699   copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:56,702   copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:56,704   copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:56,706   copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:56,708   creating build/lib/galaxy/tool_shed/galaxy_install/metadata
2023-10-23T20:40:56,709   copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata
2023-10-23T20:40:56,712   copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata
2023-10-23T20:40:56,713   creating build/lib/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:56,714   copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:56,717   copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:56,719   copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:56,721   creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2023-10-23T20:40:56,722   copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2023-10-23T20:40:56,724   copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2023-10-23T20:40:56,726   creating build/lib/galaxy/visualization/genome
2023-10-23T20:40:56,727   copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome
2023-10-23T20:40:56,729   creating build/lib/galaxy/visualization/tracks
2023-10-23T20:40:56,730   copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks
2023-10-23T20:40:56,733   creating build/lib/galaxy/visualization/data_providers
2023-10-23T20:40:56,734   copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers
2023-10-23T20:40:56,736   copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers
2023-10-23T20:40:56,739   copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers
2023-10-23T20:40:56,741   copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers
2023-10-23T20:40:56,742   copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers
2023-10-23T20:40:56,745   creating build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,745   copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,747   copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,749   copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,752   copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,754   copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,756   copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins
2023-10-23T20:40:56,758   creating build/lib/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:56,759   copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:56,761   copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:56,763   copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:56,765   copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:56,767   copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:56,770   creating build/lib/galaxy/workflow/resources
2023-10-23T20:40:56,770   copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources
2023-10-23T20:40:56,773   creating build/lib/galaxy/workflow/reports
2023-10-23T20:40:56,774   copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports
2023-10-23T20:40:56,776   creating build/lib/galaxy/workflow/schedulers
2023-10-23T20:40:56,777   copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers
2023-10-23T20:40:56,779   copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers
2023-10-23T20:40:56,781   creating build/lib/galaxy/workflow/refactor
2023-10-23T20:40:56,782   copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor
2023-10-23T20:40:56,785   copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor
2023-10-23T20:40:56,787   copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor
2023-10-23T20:40:56,789   creating build/lib/galaxy/workflow/reports/generators
2023-10-23T20:40:56,790   copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators
2023-10-23T20:40:56,792   copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators
2023-10-23T20:40:56,794   running egg_info
2023-10-23T20:40:56,798   writing galaxy_app.egg-info/PKG-INFO
2023-10-23T20:40:56,802   writing dependency_links to galaxy_app.egg-info/dependency_links.txt
2023-10-23T20:40:56,804   writing entry points to galaxy_app.egg-info/entry_points.txt
2023-10-23T20:40:56,805   writing requirements to galaxy_app.egg-info/requires.txt
2023-10-23T20:40:56,806   writing top-level names to galaxy_app.egg-info/top_level.txt
2023-10-23T20:40:56,841   reading manifest file 'galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:56,855   reading manifest template 'MANIFEST.in'
2023-10-23T20:40:57,369   adding license file 'LICENSE'
2023-10-23T20:40:57,394   writing manifest file 'galaxy_app.egg-info/SOURCES.txt'
2023-10-23T20:40:57,400   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration.
2023-10-23T20:40:57,400   !!

2023-10-23T20:40:57,402           ********************************************************************************
2023-10-23T20:40:57,402           ############################
2023-10-23T20:40:57,402           # Package would be ignored #
2023-10-23T20:40:57,403           ############################
2023-10-23T20:40:57,403           Python recognizes 'galaxy.tools.bundled' as an importable package[^1],
2023-10-23T20:40:57,404           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,405           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,405           package, please make sure that 'galaxy.tools.bundled' is explicitly added
2023-10-23T20:40:57,406           to the `packages` configuration field.

2023-10-23T20:40:57,406           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,407           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,407           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,408           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,409           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,410           If you don't want 'galaxy.tools.bundled' to be distributed and are
2023-10-23T20:40:57,410           already explicitly excluding 'galaxy.tools.bundled' via
2023-10-23T20:40:57,411           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,411           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,412           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,413           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,414           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,415           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,416                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,416                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,417                 directory, all directories are treated like packages.
2023-10-23T20:40:57,417           ********************************************************************************

2023-10-23T20:40:57,418   !!
2023-10-23T20:40:57,419     check.warn(importable)
2023-10-23T20:40:57,420   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration.
2023-10-23T20:40:57,420   !!

2023-10-23T20:40:57,421           ********************************************************************************
2023-10-23T20:40:57,422           ############################
2023-10-23T20:40:57,423           # Package would be ignored #
2023-10-23T20:40:57,423           ############################
2023-10-23T20:40:57,424           Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1],
2023-10-23T20:40:57,424           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,426           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,426           package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added
2023-10-23T20:40:57,427           to the `packages` configuration field.

2023-10-23T20:40:57,428           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,428           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,429           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,430           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,431           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,432           If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are
2023-10-23T20:40:57,432           already explicitly excluding 'galaxy.tools.bundled.data_export' via
2023-10-23T20:40:57,432           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,433           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,433           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,434           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,435           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,436           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,436                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,437                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,437                 directory, all directories are treated like packages.
2023-10-23T20:40:57,438           ********************************************************************************

2023-10-23T20:40:57,438   !!
2023-10-23T20:40:57,439     check.warn(importable)
2023-10-23T20:40:57,439   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration.
2023-10-23T20:40:57,440   !!

2023-10-23T20:40:57,440           ********************************************************************************
2023-10-23T20:40:57,441           ############################
2023-10-23T20:40:57,442           # Package would be ignored #
2023-10-23T20:40:57,442           ############################
2023-10-23T20:40:57,443           Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1],
2023-10-23T20:40:57,443           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,444           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,445           package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added
2023-10-23T20:40:57,445           to the `packages` configuration field.

2023-10-23T20:40:57,446           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,447           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,447           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,448           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,449           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,450           If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are
2023-10-23T20:40:57,451           already explicitly excluding 'galaxy.tools.bundled.data_source' via
2023-10-23T20:40:57,451           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,452           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,452           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,453           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,455           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,456           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,457                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,457                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,458                 directory, all directories are treated like packages.
2023-10-23T20:40:57,458           ********************************************************************************

2023-10-23T20:40:57,459   !!
2023-10-23T20:40:57,460     check.warn(importable)
2023-10-23T20:40:57,460   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration.
2023-10-23T20:40:57,460   !!

2023-10-23T20:40:57,462           ********************************************************************************
2023-10-23T20:40:57,462           ############################
2023-10-23T20:40:57,462           # Package would be ignored #
2023-10-23T20:40:57,463           ############################
2023-10-23T20:40:57,463           Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1],
2023-10-23T20:40:57,464           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,465           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,465           package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added
2023-10-23T20:40:57,465           to the `packages` configuration field.

2023-10-23T20:40:57,466           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,467           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,467           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,468           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,469           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,470           If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are
2023-10-23T20:40:57,470           already explicitly excluding 'galaxy.tools.bundled.expression_tools' via
2023-10-23T20:40:57,471           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,471           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,472           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,473           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,474           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,476           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,476                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,477                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,477                 directory, all directories are treated like packages.
2023-10-23T20:40:57,478           ********************************************************************************

2023-10-23T20:40:57,479   !!
2023-10-23T20:40:57,479     check.warn(importable)
2023-10-23T20:40:57,480   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration.
2023-10-23T20:40:57,480   !!

2023-10-23T20:40:57,481           ********************************************************************************
2023-10-23T20:40:57,482           ############################
2023-10-23T20:40:57,482           # Package would be ignored #
2023-10-23T20:40:57,483           ############################
2023-10-23T20:40:57,483           Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1],
2023-10-23T20:40:57,484           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,485           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,485           package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added
2023-10-23T20:40:57,486           to the `packages` configuration field.

2023-10-23T20:40:57,487           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,487           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,487           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,488           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,489           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,490           If you don't want 'galaxy.tools.bundled.extract' to be distributed and are
2023-10-23T20:40:57,491           already explicitly excluding 'galaxy.tools.bundled.extract' via
2023-10-23T20:40:57,491           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,491           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,492           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,493           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,494           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,495           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,496                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,496                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,497                 directory, all directories are treated like packages.
2023-10-23T20:40:57,498           ********************************************************************************

2023-10-23T20:40:57,498   !!
2023-10-23T20:40:57,499     check.warn(importable)
2023-10-23T20:40:57,499   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration.
2023-10-23T20:40:57,500   !!

2023-10-23T20:40:57,501           ********************************************************************************
2023-10-23T20:40:57,502           ############################
2023-10-23T20:40:57,502           # Package would be ignored #
2023-10-23T20:40:57,502           ############################
2023-10-23T20:40:57,503           Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1],
2023-10-23T20:40:57,503           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,505           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,505           package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added
2023-10-23T20:40:57,506           to the `packages` configuration field.

2023-10-23T20:40:57,507           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,507           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,508           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,509           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,510           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,511           If you don't want 'galaxy.tools.bundled.filters' to be distributed and are
2023-10-23T20:40:57,511           already explicitly excluding 'galaxy.tools.bundled.filters' via
2023-10-23T20:40:57,512           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,512           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,513           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,514           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,515           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,516           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,516                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,516                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,517                 directory, all directories are treated like packages.
2023-10-23T20:40:57,517           ********************************************************************************

2023-10-23T20:40:57,518   !!
2023-10-23T20:40:57,518     check.warn(importable)
2023-10-23T20:40:57,519   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration.
2023-10-23T20:40:57,519   !!

2023-10-23T20:40:57,520           ********************************************************************************
2023-10-23T20:40:57,521           ############################
2023-10-23T20:40:57,521           # Package would be ignored #
2023-10-23T20:40:57,522           ############################
2023-10-23T20:40:57,522           Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1],
2023-10-23T20:40:57,522           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,523           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,524           package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added
2023-10-23T20:40:57,524           to the `packages` configuration field.

2023-10-23T20:40:57,525           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,526           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,526           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,527           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,529           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,530           If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are
2023-10-23T20:40:57,530           already explicitly excluding 'galaxy.tools.bundled.filters.gff' via
2023-10-23T20:40:57,531           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,531           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,532           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,533           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,534           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,535           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,536                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,536                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,537                 directory, all directories are treated like packages.
2023-10-23T20:40:57,537           ********************************************************************************

2023-10-23T20:40:57,539   !!
2023-10-23T20:40:57,539     check.warn(importable)
2023-10-23T20:40:57,540   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration.
2023-10-23T20:40:57,540   !!

2023-10-23T20:40:57,542           ********************************************************************************
2023-10-23T20:40:57,542           ############################
2023-10-23T20:40:57,542           # Package would be ignored #
2023-10-23T20:40:57,543           ############################
2023-10-23T20:40:57,543           Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1],
2023-10-23T20:40:57,544           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,544           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,545           package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added
2023-10-23T20:40:57,545           to the `packages` configuration field.

2023-10-23T20:40:57,546           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,547           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,547           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,548           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,549           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,549           If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are
2023-10-23T20:40:57,550           already explicitly excluding 'galaxy.tools.bundled.interactive' via
2023-10-23T20:40:57,550           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,551           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,551           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,552           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,553           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,555           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,555                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,555                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,556                 directory, all directories are treated like packages.
2023-10-23T20:40:57,556           ********************************************************************************

2023-10-23T20:40:57,557   !!
2023-10-23T20:40:57,558     check.warn(importable)
2023-10-23T20:40:57,558   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration.
2023-10-23T20:40:57,559   !!

2023-10-23T20:40:57,560           ********************************************************************************
2023-10-23T20:40:57,560           ############################
2023-10-23T20:40:57,561           # Package would be ignored #
2023-10-23T20:40:57,561           ############################
2023-10-23T20:40:57,562           Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1],
2023-10-23T20:40:57,563           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,564           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,564           package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added
2023-10-23T20:40:57,565           to the `packages` configuration field.

2023-10-23T20:40:57,566           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,566           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,567           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,568           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,569           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,570           If you don't want 'galaxy.tools.bundled.maf' to be distributed and are
2023-10-23T20:40:57,570           already explicitly excluding 'galaxy.tools.bundled.maf' via
2023-10-23T20:40:57,571           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,571           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,571           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,572           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,573           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,574           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,575                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,575                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,575                 directory, all directories are treated like packages.
2023-10-23T20:40:57,576           ********************************************************************************

2023-10-23T20:40:57,577   !!
2023-10-23T20:40:57,577     check.warn(importable)
2023-10-23T20:40:57,578   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration.
2023-10-23T20:40:57,578   !!

2023-10-23T20:40:57,579           ********************************************************************************
2023-10-23T20:40:57,579           ############################
2023-10-23T20:40:57,580           # Package would be ignored #
2023-10-23T20:40:57,580           ############################
2023-10-23T20:40:57,581           Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1],
2023-10-23T20:40:57,581           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,582           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,583           package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added
2023-10-23T20:40:57,583           to the `packages` configuration field.

2023-10-23T20:40:57,584           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,585           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,585           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,586           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,587           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,588           If you don't want 'galaxy.tools.bundled.meme' to be distributed and are
2023-10-23T20:40:57,588           already explicitly excluding 'galaxy.tools.bundled.meme' via
2023-10-23T20:40:57,589           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,589           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,590           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,591           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,592           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,593           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,594                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,594                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,595                 directory, all directories are treated like packages.
2023-10-23T20:40:57,596           ********************************************************************************

2023-10-23T20:40:57,596   !!
2023-10-23T20:40:57,597     check.warn(importable)
2023-10-23T20:40:57,597   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration.
2023-10-23T20:40:57,598   !!

2023-10-23T20:40:57,598           ********************************************************************************
2023-10-23T20:40:57,599           ############################
2023-10-23T20:40:57,599           # Package would be ignored #
2023-10-23T20:40:57,600           ############################
2023-10-23T20:40:57,600           Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1],
2023-10-23T20:40:57,600           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,601           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,602           package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added
2023-10-23T20:40:57,602           to the `packages` configuration field.

2023-10-23T20:40:57,603           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,603           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,604           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,605           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,606           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,607           If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are
2023-10-23T20:40:57,607           already explicitly excluding 'galaxy.tools.bundled.metag_tools' via
2023-10-23T20:40:57,608           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,608           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,608           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,609           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,611           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,612           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,613                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,613                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,614                 directory, all directories are treated like packages.
2023-10-23T20:40:57,614           ********************************************************************************

2023-10-23T20:40:57,615   !!
2023-10-23T20:40:57,616     check.warn(importable)
2023-10-23T20:40:57,616   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration.
2023-10-23T20:40:57,617   !!

2023-10-23T20:40:57,618           ********************************************************************************
2023-10-23T20:40:57,618           ############################
2023-10-23T20:40:57,619           # Package would be ignored #
2023-10-23T20:40:57,619           ############################
2023-10-23T20:40:57,620           Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1],
2023-10-23T20:40:57,620           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,622           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,622           package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added
2023-10-23T20:40:57,623           to the `packages` configuration field.

2023-10-23T20:40:57,623           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,624           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,624           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,625           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,626           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,626           If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are
2023-10-23T20:40:57,627           already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via
2023-10-23T20:40:57,627           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,628           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,628           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,629           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,630           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,631           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,631                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,632                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,632                 directory, all directories are treated like packages.
2023-10-23T20:40:57,633           ********************************************************************************

2023-10-23T20:40:57,634   !!
2023-10-23T20:40:57,634     check.warn(importable)
2023-10-23T20:40:57,635   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration.
2023-10-23T20:40:57,635   !!

2023-10-23T20:40:57,636           ********************************************************************************
2023-10-23T20:40:57,637           ############################
2023-10-23T20:40:57,637           # Package would be ignored #
2023-10-23T20:40:57,638           ############################
2023-10-23T20:40:57,638           Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1],
2023-10-23T20:40:57,639           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,640           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,640           package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added
2023-10-23T20:40:57,641           to the `packages` configuration field.

2023-10-23T20:40:57,642           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,642           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,643           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,644           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,645           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,646           If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are
2023-10-23T20:40:57,646           already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via
2023-10-23T20:40:57,647           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,647           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,648           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,649           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,650           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,651           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,651                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,652                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,652                 directory, all directories are treated like packages.
2023-10-23T20:40:57,652           ********************************************************************************

2023-10-23T20:40:57,653   !!
2023-10-23T20:40:57,654     check.warn(importable)
2023-10-23T20:40:57,654   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration.
2023-10-23T20:40:57,655   !!

2023-10-23T20:40:57,656           ********************************************************************************
2023-10-23T20:40:57,656           ############################
2023-10-23T20:40:57,657           # Package would be ignored #
2023-10-23T20:40:57,657           ############################
2023-10-23T20:40:57,658           Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1],
2023-10-23T20:40:57,658           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,659           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,660           package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added
2023-10-23T20:40:57,660           to the `packages` configuration field.

2023-10-23T20:40:57,661           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,662           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,662           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,663           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,664           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,665           If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are
2023-10-23T20:40:57,666           already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via
2023-10-23T20:40:57,666           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,667           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,667           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,668           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,669           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,671           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,672                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,672                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,672                 directory, all directories are treated like packages.
2023-10-23T20:40:57,673           ********************************************************************************

2023-10-23T20:40:57,674   !!
2023-10-23T20:40:57,675     check.warn(importable)
2023-10-23T20:40:57,675   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration.
2023-10-23T20:40:57,676   !!

2023-10-23T20:40:57,677           ********************************************************************************
2023-10-23T20:40:57,677           ############################
2023-10-23T20:40:57,678           # Package would be ignored #
2023-10-23T20:40:57,678           ############################
2023-10-23T20:40:57,678           Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1],
2023-10-23T20:40:57,679           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,680           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,680           package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added
2023-10-23T20:40:57,680           to the `packages` configuration field.

2023-10-23T20:40:57,682           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,682           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,682           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,683           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,684           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,685           If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are
2023-10-23T20:40:57,685           already explicitly excluding 'galaxy.tools.bundled.plotting' via
2023-10-23T20:40:57,686           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,686           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,687           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,688           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,689           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,690           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,690                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,691                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,691                 directory, all directories are treated like packages.
2023-10-23T20:40:57,692           ********************************************************************************

2023-10-23T20:40:57,693   !!
2023-10-23T20:40:57,693     check.warn(importable)
2023-10-23T20:40:57,694   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration.
2023-10-23T20:40:57,694   !!

2023-10-23T20:40:57,695           ********************************************************************************
2023-10-23T20:40:57,696           ############################
2023-10-23T20:40:57,696           # Package would be ignored #
2023-10-23T20:40:57,697           ############################
2023-10-23T20:40:57,697           Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1],
2023-10-23T20:40:57,698           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,699           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,699           package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added
2023-10-23T20:40:57,700           to the `packages` configuration field.

2023-10-23T20:40:57,701           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,702           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,702           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,703           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,704           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,705           If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are
2023-10-23T20:40:57,706           already explicitly excluding 'galaxy.tools.bundled.solid_tools' via
2023-10-23T20:40:57,706           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,707           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,707           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,708           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,709           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,710           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,711                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,711                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,712                 directory, all directories are treated like packages.
2023-10-23T20:40:57,712           ********************************************************************************

2023-10-23T20:40:57,713   !!
2023-10-23T20:40:57,714     check.warn(importable)
2023-10-23T20:40:57,714   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration.
2023-10-23T20:40:57,714   !!

2023-10-23T20:40:57,715           ********************************************************************************
2023-10-23T20:40:57,716           ############################
2023-10-23T20:40:57,716           # Package would be ignored #
2023-10-23T20:40:57,717           ############################
2023-10-23T20:40:57,717           Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1],
2023-10-23T20:40:57,718           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,719           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,719           package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added
2023-10-23T20:40:57,720           to the `packages` configuration field.

2023-10-23T20:40:57,721           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,721           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,722           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,723           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,724           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,725           If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are
2023-10-23T20:40:57,726           already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via
2023-10-23T20:40:57,726           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,727           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,727           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,728           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,730           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,731           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,731                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,732                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,732                 directory, all directories are treated like packages.
2023-10-23T20:40:57,733           ********************************************************************************

2023-10-23T20:40:57,734   !!
2023-10-23T20:40:57,734     check.warn(importable)
2023-10-23T20:40:57,735   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration.
2023-10-23T20:40:57,735   !!

2023-10-23T20:40:57,736           ********************************************************************************
2023-10-23T20:40:57,736           ############################
2023-10-23T20:40:57,736           # Package would be ignored #
2023-10-23T20:40:57,737           ############################
2023-10-23T20:40:57,737           Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1],
2023-10-23T20:40:57,738           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,739           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,739           package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added
2023-10-23T20:40:57,740           to the `packages` configuration field.

2023-10-23T20:40:57,740           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,741           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,741           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,742           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,743           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,744           If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are
2023-10-23T20:40:57,744           already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via
2023-10-23T20:40:57,745           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,745           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,746           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,747           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,748           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,749           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,750                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,750                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,751                 directory, all directories are treated like packages.
2023-10-23T20:40:57,751           ********************************************************************************

2023-10-23T20:40:57,752   !!
2023-10-23T20:40:57,753     check.warn(importable)
2023-10-23T20:40:57,753   /tmp/pip-build-env-3nl10e1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration.
2023-10-23T20:40:57,754   !!

2023-10-23T20:40:57,755           ********************************************************************************
2023-10-23T20:40:57,755           ############################
2023-10-23T20:40:57,756           # Package would be ignored #
2023-10-23T20:40:57,756           ############################
2023-10-23T20:40:57,757           Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1],
2023-10-23T20:40:57,757           but it is absent from setuptools' `packages` configuration.

2023-10-23T20:40:57,758           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-23T20:40:57,759           package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added
2023-10-23T20:40:57,759           to the `packages` configuration field.

2023-10-23T20:40:57,760           Alternatively, you can also rely on setuptools' discovery methods
2023-10-23T20:40:57,761           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-23T20:40:57,761           instead of `find_packages(...)`/`find:`).

2023-10-23T20:40:57,762           You can read more about "package discovery" on setuptools documentation page:

2023-10-23T20:40:57,763           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-23T20:40:57,764           If you don't want 'galaxy.tools.bundled.stats' to be distributed and are
2023-10-23T20:40:57,764           already explicitly excluding 'galaxy.tools.bundled.stats' via
2023-10-23T20:40:57,765           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-23T20:40:57,765           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-23T20:40:57,765           combination with a more fine grained `package-data` configuration.

2023-10-23T20:40:57,766           You can read more about "package data files" on setuptools documentation page:

2023-10-23T20:40:57,767           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-23T20:40:57,768           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-23T20:40:57,769                 even if it does not contain any `.py` files.
2023-10-23T20:40:57,769                 On the other hand, currently there is no concept of package data
2023-10-23T20:40:57,770                 directory, all directories are treated like packages.
2023-10-23T20:40:57,770           ********************************************************************************

2023-10-23T20:40:57,771   !!
2023-10-23T20:40:57,772     check.warn(importable)
2023-10-23T20:40:57,772   copying galaxy_ext/py.typed -> build/lib/galaxy_ext
2023-10-23T20:40:57,773   copying galaxy/py.typed -> build/lib/galaxy
2023-10-23T20:40:57,773   copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,774   copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,774   copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,775   copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,775   copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,776   copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,776   copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,777   copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,777   copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,778   copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,778   copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,779   copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,779   copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,780   copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,780   copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,781   copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools
2023-10-23T20:40:57,782   creating build/lib/galaxy/tools/bundled
2023-10-23T20:40:57,782   copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled
2023-10-23T20:40:57,783   creating build/lib/galaxy/tools/bundled/data_export
2023-10-23T20:40:57,783   copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export
2023-10-23T20:40:57,784   copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export
2023-10-23T20:40:57,784   copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export
2023-10-23T20:40:57,785   copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export
2023-10-23T20:40:57,785   creating build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,785   copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,786   copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,786   copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,787   copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,787   copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source
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2023-10-23T20:40:57,789   copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,790   copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source
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2023-10-23T20:40:57,791   copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,792   copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source
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2023-10-23T20:40:57,796   copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source
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2023-10-23T20:40:57,797   copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,798   copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,798   copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,799   copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,799   copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source
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2023-10-23T20:40:57,801   copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,801   copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,802   copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,802   copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,803   copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source
2023-10-23T20:40:57,803   creating build/lib/galaxy/tools/bundled/expression_tools
2023-10-23T20:40:57,804   copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools
2023-10-23T20:40:57,804   copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools
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2023-10-23T20:40:57,805   creating build/lib/galaxy/tools/bundled/extract
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2023-10-23T20:40:57,806   copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract
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2023-10-23T20:40:57,807   copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract
2023-10-23T20:40:57,808   copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract
2023-10-23T20:40:57,808   creating build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,809   copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,810   copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,812   copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,812   copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,813   copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,813   copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,814   copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,814   copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,815   copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,816   copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,826   copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,828   copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,830   copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,830   copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,832   copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,835   copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,835   copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,835   copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters
2023-10-23T20:40:57,836   copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,838   copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,840   copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,843   copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters
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2023-10-23T20:40:57,844   creating build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,844   copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,845   copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,846   copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,846   copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,847   copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,847   copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,848   copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,848   copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,848   copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:57,849   creating build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,849   copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,850   copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,850   copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,851   copying galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,851   copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,852   copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,853   copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,855   copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,857   copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,859   copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,861   copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,864   copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,866   copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,869   copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,871   copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,873   copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,876   copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,878   copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,880   copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,882   copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,884   copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,886   copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,889   copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,891   copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,894   copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,896   copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive
2023-10-23T20:40:57,898   copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive
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2023-10-23T20:40:58,042   creating build/lib/galaxy/tools/bundled/ngs_simulation
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2023-10-23T20:40:58,052   creating build/lib/galaxy/tools/bundled/phenotype_association
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2023-10-23T20:40:58,122   creating build/lib/galaxy/tools/bundled/solid_tools
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2023-10-23T20:40:58,145   creating build/lib/galaxy/tools/bundled/sr_assembly
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2023-10-23T20:40:58,159   creating build/lib/galaxy/tools/bundled/sr_mapping
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2023-10-23T20:40:58,300   installing to build/bdist.linux-armv7l/wheel
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2023-10-23T20:40:58,341   creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2023-10-23T20:40:58,342   copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2023-10-23T20:40:58,344   copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2023-10-23T20:40:58,346   copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext
2023-10-23T20:40:58,348   creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2023-10-23T20:40:58,349   copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2023-10-23T20:40:58,350   copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2023-10-23T20:40:58,352   copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext
2023-10-23T20:40:58,354   creating build/bdist.linux-armv7l/wheel/tool_shed_client
2023-10-23T20:40:58,356   creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2023-10-23T20:40:58,357   copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2023-10-23T20:40:58,359   copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client
2023-10-23T20:40:58,362   creating build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:58,363   copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:58,366   creating build/bdist.linux-armv7l/wheel/galaxy/work
2023-10-23T20:40:58,367   copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work
2023-10-23T20:40:58,370   copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work
2023-10-23T20:40:58,373   creating build/bdist.linux-armv7l/wheel/galaxy/actions
2023-10-23T20:40:58,374   copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions
2023-10-23T20:40:58,376   copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions
2023-10-23T20:40:58,380   creating build/bdist.linux-armv7l/wheel/galaxy/forms
2023-10-23T20:40:58,382   copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms
2023-10-23T20:40:58,385   copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms
2023-10-23T20:40:58,388   copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:58,391   creating build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,393   copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,398   copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,402   copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,407   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,409   copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,414   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,415   copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,418   copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,421   copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,425   copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,428   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2023-10-23T20:40:58,430   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,432   copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,435   copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,438   copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,441   copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,444   copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,447   copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2023-10-23T20:40:58,449   copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2023-10-23T20:40:58,453   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:58,455   copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:58,458   copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:58,461   copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2023-10-23T20:40:58,464   copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2023-10-23T20:40:58,467   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor
2023-10-23T20:40:58,468   copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor
2023-10-23T20:40:58,472   copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,475   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:58,476   copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:58,479   copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:58,481   copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:58,483   copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2023-10-23T20:40:58,486   copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,488   copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,490   copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2023-10-23T20:40:58,492   copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,496   copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,499   copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,502   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:58,504   copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:58,507   copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:58,509   copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2023-10-23T20:40:58,511   copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,516   copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,519   copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,523   copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,527   copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,530   copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,532   copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,536   copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,539   copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,542   copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,544   copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2023-10-23T20:40:58,547   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules
2023-10-23T20:40:58,549   copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules
2023-10-23T20:40:58,551   copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,553   copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,556   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2023-10-23T20:40:58,558   copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2023-10-23T20:40:58,560   copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2023-10-23T20:40:58,562   copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2023-10-23T20:40:58,564   copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,568   copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,572   copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2023-10-23T20:40:58,574   creating build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,576   creating build/bdist.linux-armv7l/wheel/galaxy/tools/search
2023-10-23T20:40:58,577   copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search
2023-10-23T20:40:58,579   copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,582   creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,583   copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,585   copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,588   copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,590   copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,592   copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,594   copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,597   copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,599   copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2023-10-23T20:40:58,602   copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,604   copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,607   copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,610   copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,611   copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,613   creating build/bdist.linux-armv7l/wheel/galaxy/tools/util
2023-10-23T20:40:58,614   copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util
2023-10-23T20:40:58,618   creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops
2023-10-23T20:40:58,618   copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops
2023-10-23T20:40:58,620   copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util
2023-10-23T20:40:58,622   copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,624   copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,626   copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,628   copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,631   creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters
2023-10-23T20:40:58,632   copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters
2023-10-23T20:40:58,634   copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,636   copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,638   copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,640   copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,643   creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,644   copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,646   copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,648   copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,650   copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,652   copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,653   copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2023-10-23T20:40:58,656   creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,657   copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,659   copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,661   copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,664   copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,666   copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,668   copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,671   copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,673   copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,676   copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,678   copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,680   copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,683   copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2023-10-23T20:40:58,689   creating build/bdist.linux-armv7l/wheel/galaxy/tools/data
2023-10-23T20:40:58,690   copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data
2023-10-23T20:40:58,692   creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2023-10-23T20:40:58,693   copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2023-10-23T20:40:58,696   copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2023-10-23T20:40:58,698   copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,700   copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,703   creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2023-10-23T20:40:58,703   copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2023-10-23T20:40:58,705   copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2023-10-23T20:40:58,707   copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2023-10-23T20:40:58,709   copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2023-10-23T20:40:58,711   copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2023-10-23T20:40:58,713   copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,715   copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,717   copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,722   copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,725   creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports
2023-10-23T20:40:58,726   copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports
2023-10-23T20:40:58,728   creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,729   copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,731   copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,733   copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,735   copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,737   copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,739   copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,741   copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,743   copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,744   copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2023-10-23T20:40:58,747   copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,748   copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:58,750   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled
2023-10-23T20:40:58,752   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2023-10-23T20:40:58,753   copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2023-10-23T20:40:58,755   copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2023-10-23T20:40:58,757   copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2023-10-23T20:40:58,759   copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2023-10-23T20:40:58,760   copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2023-10-23T20:40:58,763   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,764   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,766   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,768   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,770   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,772   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,774   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,776   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,778   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,779   copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,782   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,784   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,787   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,788   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,790   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,792   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,794   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,795   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,797   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,799   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,801   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,803   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,804   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,806   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,808   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,810   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,812   copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,813   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,815   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,817   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,819   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,821   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,823   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2023-10-23T20:40:58,826   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,827   copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,829   copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,832   copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,834   copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,836   copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,838   copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,840   copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,842   copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2023-10-23T20:40:58,845   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,846   copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,848   copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,849   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,851   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,854   copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,855   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,858   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2023-10-23T20:40:58,860   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,861   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,863   copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,865   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,867   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,869   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,871   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,874   copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,875   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2023-10-23T20:40:58,879   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,880   copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,882   copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,884   copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,886   copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,888   copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,890   copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,892   copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,894   copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,895   copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,897   copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,899   copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,901   copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,903   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,905   copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,907   copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,909   copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,911   copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,913   copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,914   copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,916   copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,918   copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,920   copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,921   copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,923   copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,925   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,927   copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,929   copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,931   copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,933   copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,935   copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,936   copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,938   copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,940   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,942   copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,944   copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,946   copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,948   copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,950   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,951   copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,953   copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,955   copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,957   copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,958   copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,960   copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,962   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,964   copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,966   copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,967   copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,969   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,971   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,973   copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,974   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,976   copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,978   copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,980   copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,982   copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,984   copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,985   copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,987   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,989   copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,991   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,993   copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,994   copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,997   copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:58,999   copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,001   copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,003   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,004   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,006   copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,008   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,013   copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,015   copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,017   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,019   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,021   copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,023   copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2023-10-23T20:40:59,024   copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,026   copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,028   copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,030   copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,032   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,034   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,036   copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,038   copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2023-10-23T20:40:59,040   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2023-10-23T20:40:59,041   copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2023-10-23T20:40:59,043   copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2023-10-23T20:40:59,045   copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2023-10-23T20:40:59,047   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2023-10-23T20:40:59,048   copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2023-10-23T20:40:59,050   copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2023-10-23T20:40:59,052   copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2023-10-23T20:40:59,054   copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2023-10-23T20:40:59,057   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,058   copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,060   copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,063   copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,065   copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,067   copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,068   copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,070   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,072   copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,074   copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,076   copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,078   copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,080   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,082   copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,084   copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,086   copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,087   copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,089   copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,091   copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,093   copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,095   copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,097   copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,099   copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,101   copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,103   copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,105   copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,107   copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,109   copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,111   copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,113   copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,114   copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,116   copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,119   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,121   copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,123   copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,125   copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,127   copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,129   copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,130   copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2023-10-23T20:40:59,133   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,134   copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,136   copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,138   copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,140   copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,142   copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,144   copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,146   copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,148   copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,150   copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,152   copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,154   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,156   copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,158   copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,160   copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,162   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,164   copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,166   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,168   copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,170   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,172   copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,174   copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,176   copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,177   copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,179   copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,182   copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,185   copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,187   copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,190   copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,192   copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,194   copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,196   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,199   copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,202   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,204   copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2023-10-23T20:40:59,207   copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled
2023-10-23T20:40:59,210   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,211   copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,214   copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,217   copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,219   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,222   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,224   copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,227   copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,229   copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,231   copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,234   copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,237   copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,239   copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,242   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,244   copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,246   copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,248   copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,250   copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,253   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,255   copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,258   copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,260   copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,262   copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,264   copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,267   copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,269   copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2023-10-23T20:40:59,272   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2023-10-23T20:40:59,274   copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2023-10-23T20:40:59,276   copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2023-10-23T20:40:59,279   copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2023-10-23T20:40:59,282   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,282   copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,285   copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,287   copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,289   copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,292   copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,293   copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,296   copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,298   copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,300   copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,302   copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2023-10-23T20:40:59,304   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,305   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,308   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,310   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,312   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,314   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,315   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,317   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,319   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,321   copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2023-10-23T20:40:59,323   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2023-10-23T20:40:59,324   copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2023-10-23T20:40:59,327   copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2023-10-23T20:40:59,329   copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2023-10-23T20:40:59,331   copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2023-10-23T20:40:59,333   copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2023-10-23T20:40:59,335   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2023-10-23T20:40:59,336   copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2023-10-23T20:40:59,338   copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2023-10-23T20:40:59,340   copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2023-10-23T20:40:59,342   copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2023-10-23T20:40:59,344   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2023-10-23T20:40:59,345   copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2023-10-23T20:40:59,347   copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2023-10-23T20:40:59,349   copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2023-10-23T20:40:59,352   copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,355   copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,357   copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,359   copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,362   copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,365   copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,368   copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,369   copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2023-10-23T20:40:59,371   copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,374   copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,376   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2023-10-23T20:40:59,377   copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2023-10-23T20:40:59,379   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2023-10-23T20:40:59,380   copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2023-10-23T20:40:59,384   copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2023-10-23T20:40:59,386   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,386   copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,389   copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,392   copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,394   copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,396   copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,399   copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,400   copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,402   copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,404   copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,406   copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,408   copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2023-10-23T20:40:59,411   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2023-10-23T20:40:59,412   copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2023-10-23T20:40:59,414   copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2023-10-23T20:40:59,416   copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2023-10-23T20:40:59,418   copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2023-10-23T20:40:59,420   copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2023-10-23T20:40:59,422   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:59,423   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2023-10-23T20:40:59,424   copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2023-10-23T20:40:59,427   copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2023-10-23T20:40:59,429   copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:59,432   copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:59,434   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:59,435   copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:59,438   copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:59,440   copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2023-10-23T20:40:59,442   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2023-10-23T20:40:59,443   copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2023-10-23T20:40:59,446   copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2023-10-23T20:40:59,447   copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:59,450   copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2023-10-23T20:40:59,452   creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2023-10-23T20:40:59,452   copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2023-10-23T20:40:59,455   copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2023-10-23T20:40:59,456   copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2023-10-23T20:40:59,459   creating build/bdist.linux-armv7l/wheel/galaxy/celery
2023-10-23T20:40:59,460   copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2023-10-23T20:40:59,462   copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2023-10-23T20:40:59,464   copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2023-10-23T20:40:59,466   creating build/bdist.linux-armv7l/wheel/galaxy/visualization
2023-10-23T20:40:59,467   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome
2023-10-23T20:40:59,468   copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome
2023-10-23T20:40:59,471   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks
2023-10-23T20:40:59,472   copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks
2023-10-23T20:40:59,474   copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization
2023-10-23T20:40:59,476   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2023-10-23T20:40:59,478   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:59,479   copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:59,481   copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:59,483   copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:59,485   copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:59,487   copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2023-10-23T20:40:59,489   copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2023-10-23T20:40:59,492   copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2023-10-23T20:40:59,494   copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2023-10-23T20:40:59,496   copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2023-10-23T20:40:59,498   copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2023-10-23T20:40:59,500   copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization
2023-10-23T20:40:59,502   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,503   copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,505   copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,507   copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,509   copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,512   copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,514   copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2023-10-23T20:40:59,516   creating build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,517   copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,520   copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,521   copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,524   copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,527   copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,529   copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,531   copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,534   copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,536   copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,538   copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,541   copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,543   copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,545   copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,548   copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,550   copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,553   copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,556   copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,558   copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,560   copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,562   copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,564   copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,566   copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,568   copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,570   copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,573   copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,574   copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,576   copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,578   copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,580   copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,582   copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,584   copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,586   copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,588   copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,590   copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,591   copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,593   copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,596   copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,598   copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,600   copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,602   copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,604   copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,606   copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,608   copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,610   copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,614   copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,616   copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,619   copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,621   copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,622   copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,627   copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,629   copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,631   copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,633   copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,636   copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,638   copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,640   copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,642   copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2023-10-23T20:40:59,646   creating build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,646   copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,649   copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,651   copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,653   copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,655   copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,657   copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,659   copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,661   copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,663   copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,664   copying build/lib/galaxy/dependencies/typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2023-10-23T20:40:59,666   copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,668   copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,670   copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,672   creating build/bdist.linux-armv7l/wheel/galaxy/webhooks
2023-10-23T20:40:59,673   copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks
2023-10-23T20:40:59,676   creating build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,677   copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,679   copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,682   copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,684   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2023-10-23T20:40:59,686   copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2023-10-23T20:40:59,687   copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2023-10-23T20:40:59,690   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports
2023-10-23T20:40:59,691   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2023-10-23T20:40:59,692   copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2023-10-23T20:40:59,694   copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2023-10-23T20:40:59,696   copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports
2023-10-23T20:40:59,697   copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,700   copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,702   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2023-10-23T20:40:59,703   copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2023-10-23T20:40:59,705   copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2023-10-23T20:40:59,707   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2023-10-23T20:40:59,708   copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2023-10-23T20:40:59,712   copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2023-10-23T20:40:59,714   copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2023-10-23T20:40:59,715   copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,717   copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,721   copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,723   copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2023-10-23T20:40:59,726   copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,729   copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,731   copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-10-23T20:40:59,734   creating build/bdist.linux-armv7l/wheel/galaxy/authnz
2023-10-23T20:40:59,734   copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2023-10-23T20:40:59,737   copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2023-10-23T20:40:59,740   copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2023-10-23T20:40:59,742   copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2023-10-23T20:40:59,744   copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2023-10-23T20:40:59,746   running install_egg_info
2023-10-23T20:40:59,757   Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-23.1.1-py3.11.egg-info
2023-10-23T20:40:59,771   running install_scripts
2023-10-23T20:40:59,798   creating build/bdist.linux-armv7l/wheel/galaxy_app-23.1.1.dist-info/WHEEL
2023-10-23T20:40:59,800   creating '/tmp/pip-wheel-cj4u7686/.tmp-d8sh2ztg/galaxy_app-23.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-23T20:40:59,803   adding 'galaxy/__init__.py'
2023-10-23T20:40:59,808   adding 'galaxy/app.py'
2023-10-23T20:40:59,810   adding 'galaxy/config_watchers.py'
2023-10-23T20:40:59,812   adding 'galaxy/di.py'
2023-10-23T20:40:59,814   adding 'galaxy/main.py'
2023-10-23T20:40:59,816   adding 'galaxy/main_config.py'
2023-10-23T20:40:59,818   adding 'galaxy/py.typed'
2023-10-23T20:40:59,820   adding 'galaxy/queue_worker.py'
2023-10-23T20:40:59,822   adding 'galaxy/queues.py'
2023-10-23T20:40:59,824   adding 'galaxy/structured_app.py'
2023-10-23T20:40:59,826   adding 'galaxy/actions/__init__.py'
2023-10-23T20:40:59,828   adding 'galaxy/actions/library.py'
2023-10-23T20:40:59,830   adding 'galaxy/app_unittest_utils/__init__.py'
2023-10-23T20:40:59,833   adding 'galaxy/app_unittest_utils/galaxy_mock.py'
2023-10-23T20:40:59,834   adding 'galaxy/app_unittest_utils/tools_support.py'
2023-10-23T20:40:59,836   adding 'galaxy/authnz/__init__.py'
2023-10-23T20:40:59,839   adding 'galaxy/authnz/custos_authnz.py'
2023-10-23T20:40:59,843   adding 'galaxy/authnz/managers.py'
2023-10-23T20:40:59,846   adding 'galaxy/authnz/psa_authnz.py'
2023-10-23T20:40:59,848   adding 'galaxy/authnz/util.py'
2023-10-23T20:40:59,850   adding 'galaxy/celery/__init__.py'
2023-10-23T20:40:59,851   adding 'galaxy/celery/_serialization.py'
2023-10-23T20:40:59,854   adding 'galaxy/celery/tasks.py'
2023-10-23T20:40:59,857   adding 'galaxy/dependencies/__init__.py'
2023-10-23T20:40:59,858   adding 'galaxy/dependencies/conditional-requirements.txt'
2023-10-23T20:40:59,860   adding 'galaxy/dependencies/dev-requirements.txt'
2023-10-23T20:40:59,862   adding 'galaxy/dependencies/lint-requirements.txt'
2023-10-23T20:40:59,863   adding 'galaxy/dependencies/pinned-lint-requirements.txt'
2023-10-23T20:40:59,865   adding 'galaxy/dependencies/pinned-requirements.txt'
2023-10-23T20:40:59,866   adding 'galaxy/dependencies/pinned-typecheck-requirements.txt'
2023-10-23T20:40:59,868   adding 'galaxy/dependencies/typecheck-requirements.txt'
2023-10-23T20:40:59,869   adding 'galaxy/dependencies/update.sh'
2023-10-23T20:40:59,871   adding 'galaxy/dependencies/update_lint_requirements.sh'
2023-10-23T20:40:59,873   adding 'galaxy/forms/__init__.py'
2023-10-23T20:40:59,875   adding 'galaxy/forms/forms.py'
2023-10-23T20:40:59,890   adding 'galaxy/jobs/__init__.py'
2023-10-23T20:40:59,894   adding 'galaxy/jobs/command_factory.py'
2023-10-23T20:40:59,902   adding 'galaxy/jobs/dynamic_tool_destination.py'
2023-10-23T20:40:59,909   adding 'galaxy/jobs/handler.py'
2023-10-23T20:40:59,911   adding 'galaxy/jobs/manager.py'
2023-10-23T20:40:59,914   adding 'galaxy/jobs/mapper.py'
2023-10-23T20:40:59,916   adding 'galaxy/jobs/rule_helper.py'
2023-10-23T20:40:59,917   adding 'galaxy/jobs/stock_rules.py'
2023-10-23T20:40:59,919   adding 'galaxy/jobs/rules/__init__.py'
2023-10-23T20:40:59,925   adding 'galaxy/jobs/runners/__init__.py'
2023-10-23T20:40:59,928   adding 'galaxy/jobs/runners/aws.py'
2023-10-23T20:40:59,930   adding 'galaxy/jobs/runners/chronos.py'
2023-10-23T20:40:59,933   adding 'galaxy/jobs/runners/cli.py'
2023-10-23T20:40:59,935   adding 'galaxy/jobs/runners/condor.py'
2023-10-23T20:40:59,938   adding 'galaxy/jobs/runners/drmaa.py'
2023-10-23T20:40:59,941   adding 'galaxy/jobs/runners/godocker.py'
2023-10-23T20:40:59,946   adding 'galaxy/jobs/runners/kubernetes.py'
2023-10-23T20:40:59,949   adding 'galaxy/jobs/runners/local.py'
2023-10-23T20:40:59,952   adding 'galaxy/jobs/runners/pbs.py'
2023-10-23T20:40:59,959   adding 'galaxy/jobs/runners/pulsar.py'
2023-10-23T20:40:59,961   adding 'galaxy/jobs/runners/slurm.py'
2023-10-23T20:40:59,962   adding 'galaxy/jobs/runners/state_handler_factory.py'
2023-10-23T20:40:59,965   adding 'galaxy/jobs/runners/tasks.py'
2023-10-23T20:40:59,969   adding 'galaxy/jobs/runners/univa.py'
2023-10-23T20:40:59,971   adding 'galaxy/jobs/runners/state_handlers/__init__.py'
2023-10-23T20:40:59,973   adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py'
2023-10-23T20:40:59,975   adding 'galaxy/jobs/runners/state_handlers/resubmit.py'
2023-10-23T20:40:59,977   adding 'galaxy/jobs/runners/util/__init__.py'
2023-10-23T20:40:59,978   adding 'galaxy/jobs/runners/util/env.py'
2023-10-23T20:40:59,980   adding 'galaxy/jobs/runners/util/external.py'
2023-10-23T20:40:59,981   adding 'galaxy/jobs/runners/util/fork_safe_write.py'
2023-10-23T20:40:59,983   adding 'galaxy/jobs/runners/util/kill.py'
2023-10-23T20:40:59,984   adding 'galaxy/jobs/runners/util/process_groups.py'
2023-10-23T20:40:59,987   adding 'galaxy/jobs/runners/util/pykube_util.py'
2023-10-23T20:40:59,989   adding 'galaxy/jobs/runners/util/sudo.py'
2023-10-23T20:40:59,991   adding 'galaxy/jobs/runners/util/cli/__init__.py'
2023-10-23T20:40:59,993   adding 'galaxy/jobs/runners/util/cli/factory.py'
2023-10-23T20:40:59,995   adding 'galaxy/jobs/runners/util/cli/job/__init__.py'
2023-10-23T20:40:59,998   adding 'galaxy/jobs/runners/util/cli/job/lsf.py'
2023-10-23T20:40:59,999   adding 'galaxy/jobs/runners/util/cli/job/pbs.py'
2023-10-23T20:41:00,001   adding 'galaxy/jobs/runners/util/cli/job/slurm.py'
2023-10-23T20:41:00,003   adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py'
2023-10-23T20:41:00,005   adding 'galaxy/jobs/runners/util/cli/job/torque.py'
2023-10-23T20:41:00,008   adding 'galaxy/jobs/runners/util/cli/shell/__init__.py'
2023-10-23T20:41:00,010   adding 'galaxy/jobs/runners/util/cli/shell/local.py'
2023-10-23T20:41:00,012   adding 'galaxy/jobs/runners/util/cli/shell/rsh.py'
2023-10-23T20:41:00,015   adding 'galaxy/jobs/runners/util/condor/__init__.py'
2023-10-23T20:41:00,017   adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh'
2023-10-23T20:41:00,019   adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh'
2023-10-23T20:41:00,021   adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh'
2023-10-23T20:41:00,024   adding 'galaxy/jobs/runners/util/job_script/__init__.py'
2023-10-23T20:41:00,026   adding 'galaxy/jobs/splitters/__init__.py'
2023-10-23T20:41:00,028   adding 'galaxy/jobs/splitters/basic.py'
2023-10-23T20:41:00,031   adding 'galaxy/jobs/splitters/multi.py'
2023-10-23T20:41:00,038   adding 'galaxy/managers/__init__.py'
2023-10-23T20:41:00,040   adding 'galaxy/managers/annotatable.py'
2023-10-23T20:41:00,042   adding 'galaxy/managers/api_keys.py'
2023-10-23T20:41:00,053   adding 'galaxy/managers/base.py'
2023-10-23T20:41:00,056   adding 'galaxy/managers/citations.py'
2023-10-23T20:41:00,059   adding 'galaxy/managers/cloud.py'
2023-10-23T20:41:00,062   adding 'galaxy/managers/cloudauthzs.py'
2023-10-23T20:41:00,068   adding 'galaxy/managers/collections.py'
2023-10-23T20:41:00,071   adding 'galaxy/managers/collections_util.py'
2023-10-23T20:41:00,074   adding 'galaxy/managers/configuration.py'
2023-10-23T20:41:00,078   adding 'galaxy/managers/context.py'
2023-10-23T20:41:00,085   adding 'galaxy/managers/datasets.py'
2023-10-23T20:41:00,087   adding 'galaxy/managers/datatypes.py'
2023-10-23T20:41:00,089   adding 'galaxy/managers/deletable.py'
2023-10-23T20:41:00,090   adding 'galaxy/managers/display_applications.py'
2023-10-23T20:41:00,092   adding 'galaxy/managers/executables.py'
2023-10-23T20:41:00,093   adding 'galaxy/managers/export_tracker.py'
2023-10-23T20:41:00,096   adding 'galaxy/managers/folders.py'
2023-10-23T20:41:00,098   adding 'galaxy/managers/genomes.py'
2023-10-23T20:41:00,100   adding 'galaxy/managers/group_roles.py'
2023-10-23T20:41:00,102   adding 'galaxy/managers/group_users.py'
2023-10-23T20:41:00,103   adding 'galaxy/managers/groups.py'
2023-10-23T20:41:00,107   adding 'galaxy/managers/hdas.py'
2023-10-23T20:41:00,109   adding 'galaxy/managers/hdcas.py'
2023-10-23T20:41:00,114   adding 'galaxy/managers/histories.py'
2023-10-23T20:41:00,118   adding 'galaxy/managers/history_contents.py'
2023-10-23T20:41:00,120   adding 'galaxy/managers/interactivetool.py'
2023-10-23T20:41:00,122   adding 'galaxy/managers/job_connections.py'
2023-10-23T20:41:00,127   adding 'galaxy/managers/jobs.py'
2023-10-23T20:41:00,129   adding 'galaxy/managers/lddas.py'
2023-10-23T20:41:00,131   adding 'galaxy/managers/libraries.py'
2023-10-23T20:41:00,133   adding 'galaxy/managers/library_datasets.py'
2023-10-23T20:41:00,145   adding 'galaxy/managers/licenses.json'
2023-10-23T20:41:00,148   adding 'galaxy/managers/licenses.py'
2023-10-23T20:41:00,149   adding 'galaxy/managers/markdown_export_base.css'
2023-10-23T20:41:00,151   adding 'galaxy/managers/markdown_parse.py'
2023-10-23T20:41:00,155   adding 'galaxy/managers/markdown_util.py'
2023-10-23T20:41:00,156   adding 'galaxy/managers/metrics.py'
2023-10-23T20:41:00,158   adding 'galaxy/managers/model_stores.py'
2023-10-23T20:41:00,161   adding 'galaxy/managers/notification.py'
2023-10-23T20:41:00,164   adding 'galaxy/managers/pages.py'
2023-10-23T20:41:00,166   adding 'galaxy/managers/quotas.py'
2023-10-23T20:41:00,167   adding 'galaxy/managers/ratable.py'
2023-10-23T20:41:00,169   adding 'galaxy/managers/rbac_secured.py'
2023-10-23T20:41:00,170   adding 'galaxy/managers/remote_files.py'
2023-10-23T20:41:00,172   adding 'galaxy/managers/roles.py'
2023-10-23T20:41:00,173   adding 'galaxy/managers/secured.py'
2023-10-23T20:41:00,175   adding 'galaxy/managers/session.py'
2023-10-23T20:41:00,177   adding 'galaxy/managers/sharable.py'
2023-10-23T20:41:00,179   adding 'galaxy/managers/taggable.py'
2023-10-23T20:41:00,180   adding 'galaxy/managers/tags.py'
2023-10-23T20:41:00,181   adding 'galaxy/managers/tasks.py'
2023-10-23T20:41:00,183   adding 'galaxy/managers/tool_data.py'
2023-10-23T20:41:00,184   adding 'galaxy/managers/tools.py'
2023-10-23T20:41:00,188   adding 'galaxy/managers/users.py'
2023-10-23T20:41:00,190   adding 'galaxy/managers/visualizations.py'
2023-10-23T20:41:00,200   adding 'galaxy/managers/workflows.py'
2023-10-23T20:41:00,203   adding 'galaxy/tool_shed/__init__.py'
2023-10-23T20:41:00,204   adding 'galaxy/tool_shed/cache.py'
2023-10-23T20:41:00,205   adding 'galaxy/tool_shed/repository_type.py'
2023-10-23T20:41:00,207   adding 'galaxy/tool_shed/galaxy_install/__init__.py'
2023-10-23T20:41:00,212   adding 'galaxy/tool_shed/galaxy_install/install_manager.py'
2023-10-23T20:41:00,218   adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py'
2023-10-23T20:41:00,220   adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py'
2023-10-23T20:41:00,221   adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py'
2023-10-23T20:41:00,223   adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py'
2023-10-23T20:41:00,225   adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py'
2023-10-23T20:41:00,229   adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py'
2023-10-23T20:41:00,231   adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py'
2023-10-23T20:41:00,233   adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py'
2023-10-23T20:41:00,236   adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py'
2023-10-23T20:41:00,238   adding 'galaxy/tool_shed/metadata/__init__.py'
2023-10-23T20:41:00,244   adding 'galaxy/tool_shed/metadata/metadata_generator.py'
2023-10-23T20:41:00,246   adding 'galaxy/tool_shed/tools/__init__.py'
2023-10-23T20:41:00,248   adding 'galaxy/tool_shed/tools/data_table_manager.py'
2023-10-23T20:41:00,250   adding 'galaxy/tool_shed/tools/tool_validator.py'
2023-10-23T20:41:00,252   adding 'galaxy/tool_shed/util/__init__.py'
2023-10-23T20:41:00,253   adding 'galaxy/tool_shed/util/basic_util.py'
2023-10-23T20:41:00,255   adding 'galaxy/tool_shed/util/container_util.py'
2023-10-23T20:41:00,257   adding 'galaxy/tool_shed/util/dependency_display.py'
2023-10-23T20:41:00,259   adding 'galaxy/tool_shed/util/hg_util.py'
2023-10-23T20:41:00,260   adding 'galaxy/tool_shed/util/metadata_util.py'
2023-10-23T20:41:00,264   adding 'galaxy/tool_shed/util/repository_util.py'
2023-10-23T20:41:00,266   adding 'galaxy/tool_shed/util/shed_util_common.py'
2023-10-23T20:41:00,268   adding 'galaxy/tool_shed/util/tool_dependency_util.py'
2023-10-23T20:41:00,270   adding 'galaxy/tool_shed/util/tool_util.py'
2023-10-23T20:41:00,274   adding 'galaxy/tool_shed/util/utility_container_manager.py'
2023-10-23T20:41:00,297   adding 'galaxy/tools/__init__.py'
2023-10-23T20:41:00,299   adding 'galaxy/tools/apply_rules.xml'
2023-10-23T20:41:00,301   adding 'galaxy/tools/biotools.py'
2023-10-23T20:41:00,302   adding 'galaxy/tools/build_list.xml'
2023-10-23T20:41:00,304   adding 'galaxy/tools/build_list_1.2.0.xml'
2023-10-23T20:41:00,305   adding 'galaxy/tools/cache.py'
2023-10-23T20:41:00,309   adding 'galaxy/tools/data_fetch.py'
2023-10-23T20:41:00,310   adding 'galaxy/tools/data_fetch.xml'
2023-10-23T20:41:00,311   adding 'galaxy/tools/duplicate_file_to_collection.xml'
2023-10-23T20:41:00,313   adding 'galaxy/tools/errors.py'
2023-10-23T20:41:00,318   adding 'galaxy/tools/evaluation.py'
2023-10-23T20:41:00,320   adding 'galaxy/tools/exception_handling.py'
2023-10-23T20:41:00,323   adding 'galaxy/tools/execute.py'
2023-10-23T20:41:00,325   adding 'galaxy/tools/extract_dataset.xml'
2023-10-23T20:41:00,326   adding 'galaxy/tools/filter_empty_collection.xml'
2023-10-23T20:41:00,327   adding 'galaxy/tools/filter_failed_collection.xml'
2023-10-23T20:41:00,328   adding 'galaxy/tools/filter_from_file.xml'
2023-10-23T20:41:00,330   adding 'galaxy/tools/flatten_collection.xml'
2023-10-23T20:41:00,331   adding 'galaxy/tools/merge_collection.xml'
2023-10-23T20:41:00,334   adding 'galaxy/tools/recommendations.py'
2023-10-23T20:41:00,336   adding 'galaxy/tools/relabel_from_file.xml'
2023-10-23T20:41:00,337   adding 'galaxy/tools/remote_tool_eval.py'
2023-10-23T20:41:00,338   adding 'galaxy/tools/repositories.py'
2023-10-23T20:41:00,340   adding 'galaxy/tools/sort_collection_list.xml'
2023-10-23T20:41:00,341   adding 'galaxy/tools/special_tools.py'
2023-10-23T20:41:00,343   adding 'galaxy/tools/tag_collection_from_file.xml'
2023-10-23T20:41:00,345   adding 'galaxy/tools/test.py'
2023-10-23T20:41:00,346   adding 'galaxy/tools/unzip_collection.xml'
2023-10-23T20:41:00,350   adding 'galaxy/tools/wrappers.py'
2023-10-23T20:41:00,351   adding 'galaxy/tools/zip_collection.xml'
2023-10-23T20:41:00,359   adding 'galaxy/tools/actions/__init__.py'
2023-10-23T20:41:00,360   adding 'galaxy/tools/actions/data_manager.py'
2023-10-23T20:41:00,362   adding 'galaxy/tools/actions/data_source.py'
2023-10-23T20:41:00,363   adding 'galaxy/tools/actions/history_imp_exp.py'
2023-10-23T20:41:00,365   adding 'galaxy/tools/actions/metadata.py'
2023-10-23T20:41:00,366   adding 'galaxy/tools/actions/model_operations.py'
2023-10-23T20:41:00,368   adding 'galaxy/tools/actions/upload.py'
2023-10-23T20:41:00,371   adding 'galaxy/tools/actions/upload_common.py'
2023-10-23T20:41:00,372   adding 'galaxy/tools/bundled/__init__.py'
2023-10-23T20:41:00,374   adding 'galaxy/tools/bundled/data_export/export_remote.py'
2023-10-23T20:41:00,376   adding 'galaxy/tools/bundled/data_export/export_remote.xml'
2023-10-23T20:41:00,377   adding 'galaxy/tools/bundled/data_export/send.py'
2023-10-23T20:41:00,378   adding 'galaxy/tools/bundled/data_export/send.xml'
2023-10-23T20:41:00,381   adding 'galaxy/tools/bundled/data_source/__init__.py'
2023-10-23T20:41:00,382   adding 'galaxy/tools/bundled/data_source/access_libraries.xml'
2023-10-23T20:41:00,383   adding 'galaxy/tools/bundled/data_source/biomart.xml'
2023-10-23T20:41:00,384   adding 'galaxy/tools/bundled/data_source/biomart_test.xml'
2023-10-23T20:41:00,386   adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml'
2023-10-23T20:41:00,388   adding 'galaxy/tools/bundled/data_source/data_source.py'
2023-10-23T20:41:00,390   adding 'galaxy/tools/bundled/data_source/ebi_sra.xml'
2023-10-23T20:41:00,391   adding 'galaxy/tools/bundled/data_source/eupathdb.xml'
2023-10-23T20:41:00,392   adding 'galaxy/tools/bundled/data_source/fly_modencode.xml'
2023-10-23T20:41:00,393   adding 'galaxy/tools/bundled/data_source/flymine.xml'
2023-10-23T20:41:00,395   adding 'galaxy/tools/bundled/data_source/flymine_test.xml'
2023-10-23T20:41:00,396   adding 'galaxy/tools/bundled/data_source/genbank.py'
2023-10-23T20:41:00,397   adding 'galaxy/tools/bundled/data_source/genbank.xml'
2023-10-23T20:41:00,399   adding 'galaxy/tools/bundled/data_source/gramene_mart.xml'
2023-10-23T20:41:00,400   adding 'galaxy/tools/bundled/data_source/hapmapmart.xml'
2023-10-23T20:41:00,402   adding 'galaxy/tools/bundled/data_source/hbvar.xml'
2023-10-23T20:41:00,403   adding 'galaxy/tools/bundled/data_source/import.py'
2023-10-23T20:41:00,404   adding 'galaxy/tools/bundled/data_source/import.xml'
2023-10-23T20:41:00,406   adding 'galaxy/tools/bundled/data_source/intermine.xml'
2023-10-23T20:41:00,407   adding 'galaxy/tools/bundled/data_source/metabolicmine.xml'
2023-10-23T20:41:00,408   adding 'galaxy/tools/bundled/data_source/microbial_import.py'
2023-10-23T20:41:00,410   adding 'galaxy/tools/bundled/data_source/microbial_import.xml'
2023-10-23T20:41:00,411   adding 'galaxy/tools/bundled/data_source/microbial_import_code.py'
2023-10-23T20:41:00,413   adding 'galaxy/tools/bundled/data_source/modmine.xml'
2023-10-23T20:41:00,414   adding 'galaxy/tools/bundled/data_source/mousemine.xml'
2023-10-23T20:41:00,415   adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml'
2023-10-23T20:41:00,416   adding 'galaxy/tools/bundled/data_source/ratmine.xml'
2023-10-23T20:41:00,418   adding 'galaxy/tools/bundled/data_source/sra.xml'
2023-10-23T20:41:00,419   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml'
2023-10-23T20:41:00,420   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml'
2023-10-23T20:41:00,422   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml'
2023-10-23T20:41:00,643   adding 'galaxy/tools/bundled/data_source/upload.py'
2023-10-23T20:41:00,645   adding 'galaxy/tools/bundled/data_source/upload.xml'
2023-10-23T20:41:00,646   adding 'galaxy/tools/bundled/data_source/worm_modencode.xml'
2023-10-23T20:41:00,648   adding 'galaxy/tools/bundled/data_source/wormbase.xml'
2023-10-23T20:41:00,649   adding 'galaxy/tools/bundled/data_source/wormbase_test.xml'
2023-10-23T20:41:00,650   adding 'galaxy/tools/bundled/data_source/yeastmine.xml'
2023-10-23T20:41:00,651   adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml'
2023-10-23T20:41:00,653   adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml'
2023-10-23T20:41:00,655   adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml'
2023-10-23T20:41:00,656   adding 'galaxy/tools/bundled/expression_tools/pick_value.xml'
2023-10-23T20:41:00,658   adding 'galaxy/tools/bundled/extract/__init__.py'
2023-10-23T20:41:00,660   adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py'
2023-10-23T20:41:00,662   adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml'
2023-10-23T20:41:00,663   adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py'
2023-10-23T20:41:00,665   adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml'
2023-10-23T20:41:00,668   adding 'galaxy/tools/bundled/filters/CreateInterval.pl'
2023-10-23T20:41:00,669   adding 'galaxy/tools/bundled/filters/CreateInterval.xml'
2023-10-23T20:41:00,670   adding 'galaxy/tools/bundled/filters/__init__.py'
2023-10-23T20:41:00,672   adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py'
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2023-10-23T20:41:00,674   adding 'galaxy/tools/bundled/filters/axt_to_fasta.py'
2023-10-23T20:41:00,676   adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml'
2023-10-23T20:41:00,677   adding 'galaxy/tools/bundled/filters/axt_to_lav.py'
2023-10-23T20:41:00,679   adding 'galaxy/tools/bundled/filters/axt_to_lav.xml'
2023-10-23T20:41:00,680   adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py'
2023-10-23T20:41:00,681   adding 'galaxy/tools/bundled/filters/bed2gff.xml'
2023-10-23T20:41:00,683   adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml'
2023-10-23T20:41:00,685   adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py'
2023-10-23T20:41:00,686   adding 'galaxy/tools/bundled/filters/catWrapper.py'
2023-10-23T20:41:00,687   adding 'galaxy/tools/bundled/filters/catWrapper.xml'
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2023-10-23T20:41:00,694   adding 'galaxy/tools/bundled/filters/compare.xml'
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2023-10-23T20:41:00,698   adding 'galaxy/tools/bundled/filters/convert_characters.py'
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2023-10-23T20:41:00,708   adding 'galaxy/tools/bundled/filters/gff2bed.xml'
2023-10-23T20:41:00,709   adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py'
2023-10-23T20:41:00,711   adding 'galaxy/tools/bundled/filters/grep.py'
2023-10-23T20:41:00,712   adding 'galaxy/tools/bundled/filters/grep.xml'
2023-10-23T20:41:00,714   adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml'
2023-10-23T20:41:00,715   adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml'
2023-10-23T20:41:00,717   adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py'
2023-10-23T20:41:00,718   adding 'galaxy/tools/bundled/filters/headWrapper.xml'
2023-10-23T20:41:00,721   adding 'galaxy/tools/bundled/filters/join.py'
2023-10-23T20:41:00,722   adding 'galaxy/tools/bundled/filters/joinWrapper.py'
2023-10-23T20:41:00,724   adding 'galaxy/tools/bundled/filters/joiner.xml'
2023-10-23T20:41:00,725   adding 'galaxy/tools/bundled/filters/joiner2.xml'
2023-10-23T20:41:00,726   adding 'galaxy/tools/bundled/filters/lav_to_bed.py'
2023-10-23T20:41:00,728   adding 'galaxy/tools/bundled/filters/lav_to_bed.xml'
2023-10-23T20:41:00,729   adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py'
2023-10-23T20:41:00,730   adding 'galaxy/tools/bundled/filters/mergeCols.py'
2023-10-23T20:41:00,732   adding 'galaxy/tools/bundled/filters/mergeCols.xml'
2023-10-23T20:41:00,733   adding 'galaxy/tools/bundled/filters/pasteWrapper.pl'
2023-10-23T20:41:00,734   adding 'galaxy/tools/bundled/filters/pasteWrapper.xml'
2023-10-23T20:41:00,736   adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py'
2023-10-23T20:41:00,737   adding 'galaxy/tools/bundled/filters/randomlines.py'
2023-10-23T20:41:00,738   adding 'galaxy/tools/bundled/filters/randomlines.xml'
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2023-10-23T20:41:00,741   adding 'galaxy/tools/bundled/filters/remove_beginning.xml'
2023-10-23T20:41:00,742   adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py'
2023-10-23T20:41:00,743   adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml'
2023-10-23T20:41:00,750   adding 'galaxy/tools/bundled/filters/sff_extract.py'
2023-10-23T20:41:00,751   adding 'galaxy/tools/bundled/filters/sff_extractor.xml'
2023-10-23T20:41:00,753   adding 'galaxy/tools/bundled/filters/sorter.py'
2023-10-23T20:41:00,755   adding 'galaxy/tools/bundled/filters/sorter.xml'
2023-10-23T20:41:00,756   adding 'galaxy/tools/bundled/filters/tailWrapper.xml'
2023-10-23T20:41:00,758   adding 'galaxy/tools/bundled/filters/trimmer.py'
2023-10-23T20:41:00,759   adding 'galaxy/tools/bundled/filters/trimmer.xml'
2023-10-23T20:41:00,760   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py'
2023-10-23T20:41:00,762   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml'
2023-10-23T20:41:00,764   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py'
2023-10-23T20:41:00,766   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml'
2023-10-23T20:41:00,767   adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py'
2023-10-23T20:41:00,769   adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml'
2023-10-23T20:41:00,771   adding 'galaxy/tools/bundled/filters/uniq.py'
2023-10-23T20:41:00,773   adding 'galaxy/tools/bundled/filters/uniq.xml'
2023-10-23T20:41:00,774   adding 'galaxy/tools/bundled/filters/wc_gnu.xml'
2023-10-23T20:41:00,775   adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml'
2023-10-23T20:41:00,777   adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py'
2023-10-23T20:41:00,778   adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml'
2023-10-23T20:41:00,781   adding 'galaxy/tools/bundled/filters/gff/__init__.py'
2023-10-23T20:41:00,783   adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py'
2023-10-23T20:41:00,785   adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml'
2023-10-23T20:41:00,789   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py'
2023-10-23T20:41:00,790   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml'
2023-10-23T20:41:00,792   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py'
2023-10-23T20:41:00,793   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml'
2023-10-23T20:41:00,795   adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py'
2023-10-23T20:41:00,797   adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml'
2023-10-23T20:41:00,799   adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb'
2023-10-23T20:41:00,801   adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml'
2023-10-23T20:41:00,803   adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml'
2023-10-23T20:41:00,805   adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml'
2023-10-23T20:41:00,807   adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml'
2023-10-23T20:41:00,809   adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml'
2023-10-23T20:41:00,811   adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml'
2023-10-23T20:41:00,813   adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml'
2023-10-23T20:41:00,815   adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml'
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2023-10-23T20:41:00,819   adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml'
2023-10-23T20:41:00,821   adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml'
2023-10-23T20:41:00,823   adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml'
2023-10-23T20:41:00,825   adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml'
2023-10-23T20:41:00,827   adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml'
2023-10-23T20:41:00,829   adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml'
2023-10-23T20:41:00,831   adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml'
2023-10-23T20:41:00,833   adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml'
2023-10-23T20:41:00,835   adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml'
2023-10-23T20:41:00,836   adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml'
2023-10-23T20:41:00,838   adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml'
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2023-10-23T20:41:00,844   adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml'
2023-10-23T20:41:00,846   adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml'
2023-10-23T20:41:00,847   adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml'
2023-10-23T20:41:00,848   adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml'
2023-10-23T20:41:00,850   adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml'
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2023-10-23T20:41:00,853   adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml'
2023-10-23T20:41:00,855   adding 'galaxy/tools/bundled/interactive/simtext_app.R'
2023-10-23T20:41:00,858   adding 'galaxy/tools/bundled/maf/__init__.py'
2023-10-23T20:41:00,859   adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml'
2023-10-23T20:41:00,861   adding 'galaxy/tools/bundled/maf/interval2maf.py'
2023-10-23T20:41:00,862   adding 'galaxy/tools/bundled/maf/interval2maf.xml'
2023-10-23T20:41:00,864   adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml'
2023-10-23T20:41:00,865   adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py'
2023-10-23T20:41:00,867   adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml'
2023-10-23T20:41:00,868   adding 'galaxy/tools/bundled/maf/macros.xml'
2023-10-23T20:41:00,869   adding 'galaxy/tools/bundled/maf/maf_by_block_number.py'
2023-10-23T20:41:00,870   adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml'
2023-10-23T20:41:00,872   adding 'galaxy/tools/bundled/maf/maf_filter.py'
2023-10-23T20:41:00,873   adding 'galaxy/tools/bundled/maf/maf_filter.xml'
2023-10-23T20:41:00,875   adding 'galaxy/tools/bundled/maf/maf_limit_size.py'
2023-10-23T20:41:00,876   adding 'galaxy/tools/bundled/maf/maf_limit_size.xml'
2023-10-23T20:41:00,877   adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py'
2023-10-23T20:41:00,878   adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml'
2023-10-23T20:41:00,879   adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py'
2023-10-23T20:41:00,880   adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml'
2023-10-23T20:41:00,882   adding 'galaxy/tools/bundled/maf/maf_split_by_species.py'
2023-10-23T20:41:00,883   adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml'
2023-10-23T20:41:00,885   adding 'galaxy/tools/bundled/maf/maf_stats.py'
2023-10-23T20:41:00,886   adding 'galaxy/tools/bundled/maf/maf_stats.xml'
2023-10-23T20:41:00,887   adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py'
2023-10-23T20:41:00,889   adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml'
2023-10-23T20:41:00,890   adding 'galaxy/tools/bundled/maf/maf_to_bed.py'
2023-10-23T20:41:00,892   adding 'galaxy/tools/bundled/maf/maf_to_bed.xml'
2023-10-23T20:41:00,893   adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py'
2023-10-23T20:41:00,895   adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml'
2023-10-23T20:41:00,896   adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py'
2023-10-23T20:41:00,897   adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py'
2023-10-23T20:41:00,899   adding 'galaxy/tools/bundled/maf/maf_to_interval.py'
2023-10-23T20:41:00,900   adding 'galaxy/tools/bundled/maf/maf_to_interval.xml'
2023-10-23T20:41:00,902   adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py'
2023-10-23T20:41:00,904   adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml'
2023-10-23T20:41:00,905   adding 'galaxy/tools/bundled/meme/__init__.py'
2023-10-23T20:41:00,907   adding 'galaxy/tools/bundled/meme/fimo.xml'
2023-10-23T20:41:00,908   adding 'galaxy/tools/bundled/meme/fimo_wrapper.py'
2023-10-23T20:41:00,910   adding 'galaxy/tools/bundled/meme/meme.xml'
2023-10-23T20:41:00,912   adding 'galaxy/tools/bundled/metag_tools/__init__.py'
2023-10-23T20:41:00,914   adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py'
2023-10-23T20:41:00,915   adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml'
2023-10-23T20:41:00,916   adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py'
2023-10-23T20:41:00,918   adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml'
2023-10-23T20:41:00,921   adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py'
2023-10-23T20:41:00,924   adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml'
2023-10-23T20:41:00,926   adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl'
2023-10-23T20:41:00,927   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py'
2023-10-23T20:41:00,928   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml'
2023-10-23T20:41:00,930   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py'
2023-10-23T20:41:00,932   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml'
2023-10-23T20:41:00,933   adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py'
2023-10-23T20:41:00,935   adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml'
2023-10-23T20:41:00,936   adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py'
2023-10-23T20:41:00,937   adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml'
2023-10-23T20:41:00,939   adding 'galaxy/tools/bundled/ngs_simulation/__init__.py'
2023-10-23T20:41:00,941   adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py'
2023-10-23T20:41:00,942   adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml'
2023-10-23T20:41:00,944   adding 'galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh'
2023-10-23T20:41:00,945   adding 'galaxy/tools/bundled/phenotype_association/__init__.py'
2023-10-23T20:41:00,947   adding 'galaxy/tools/bundled/phenotype_association/beam.xml'
2023-10-23T20:41:00,948   adding 'galaxy/tools/bundled/phenotype_association/gpass.pl'
2023-10-23T20:41:00,950   adding 'galaxy/tools/bundled/phenotype_association/gpass.xml'
2023-10-23T20:41:00,951   adding 'galaxy/tools/bundled/phenotype_association/ldtools.xml'
2023-10-23T20:41:00,952   adding 'galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh'
2023-10-23T20:41:00,954   adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.pl'
2023-10-23T20:41:00,955   adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.xml'
2023-10-23T20:41:00,956   adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.pl'
2023-10-23T20:41:00,958   adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.xml'
2023-10-23T20:41:00,959   adding 'galaxy/tools/bundled/phenotype_association/lped_to_geno.pl'
2023-10-23T20:41:00,961   adding 'galaxy/tools/bundled/phenotype_association/lps.xml'
2023-10-23T20:41:00,963   adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh'
2023-10-23T20:41:00,964   adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl'
2023-10-23T20:41:00,966   adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.xml'
2023-10-23T20:41:00,967   adding 'galaxy/tools/bundled/phenotype_association/master2pg.pl'
2023-10-23T20:41:00,969   adding 'galaxy/tools/bundled/phenotype_association/master2pg.xml'
2023-10-23T20:41:00,970   adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl'
2023-10-23T20:41:00,972   adding 'galaxy/tools/bundled/phenotype_association/pagetag.py'
2023-10-23T20:41:00,973   adding 'galaxy/tools/bundled/phenotype_association/pass.xml'
2023-10-23T20:41:00,975   adding 'galaxy/tools/bundled/phenotype_association/pass_wrapper.sh'
2023-10-23T20:41:00,976   adding 'galaxy/tools/bundled/phenotype_association/senatag.py'
2023-10-23T20:41:00,978   adding 'galaxy/tools/bundled/phenotype_association/sift.xml'
2023-10-23T20:41:00,979   adding 'galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh'
2023-10-23T20:41:00,982   adding 'galaxy/tools/bundled/plotting/bar_chart.py'
2023-10-23T20:41:00,983   adding 'galaxy/tools/bundled/plotting/bar_chart.xml'
2023-10-23T20:41:00,985   adding 'galaxy/tools/bundled/plotting/boxplot.xml'
2023-10-23T20:41:00,987   adding 'galaxy/tools/bundled/solid_tools/__init__.py'
2023-10-23T20:41:00,988   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py'
2023-10-23T20:41:00,990   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml'
2023-10-23T20:41:00,991   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py'
2023-10-23T20:41:00,993   adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh'
2023-10-23T20:41:00,994   adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml'
2023-10-23T20:41:00,996   adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py'
2023-10-23T20:41:00,997   adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml'
2023-10-23T20:41:00,999   adding 'galaxy/tools/bundled/sr_assembly/__init__.py'
2023-10-23T20:41:01,001   adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml'
2023-10-23T20:41:01,003   adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py'
2023-10-23T20:41:01,004   adding 'galaxy/tools/bundled/sr_assembly/velveth.xml'
2023-10-23T20:41:01,005   adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py'
2023-10-23T20:41:01,009   adding 'galaxy/tools/bundled/sr_mapping/PerM.xml'
2023-10-23T20:41:01,010   adding 'galaxy/tools/bundled/sr_mapping/__init__.py'
2023-10-23T20:41:01,012   adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py'
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2023-10-23T20:41:01,017   adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml'
2023-10-23T20:41:01,018   adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml'
2023-10-23T20:41:01,020   adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py'
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2023-10-23T20:41:01,024   adding 'galaxy/tools/bundled/stats/__init__.py'
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2023-10-23T20:41:01,030   adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py'
2023-10-23T20:41:01,032   adding 'galaxy/tools/bundled/stats/filtering.py'
2023-10-23T20:41:01,034   adding 'galaxy/tools/bundled/stats/filtering.xml'
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2023-10-23T20:41:01,037   adding 'galaxy/tools/bundled/stats/grouping.xml'
2023-10-23T20:41:01,038   adding 'galaxy/tools/bundled/stats/gsummary.py'
2023-10-23T20:41:01,040   adding 'galaxy/tools/bundled/stats/gsummary.xml'
2023-10-23T20:41:01,041   adding 'galaxy/tools/bundled/stats/r_wrapper.sh'
2023-10-23T20:41:01,043   adding 'galaxy/tools/data/__init__.py'
2023-10-23T20:41:01,045   adding 'galaxy/tools/data_manager/__init__.py'
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2023-10-23T20:41:01,048   adding 'galaxy/tools/error_reports/__init__.py'
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2023-10-23T20:41:01,053   adding 'galaxy/tools/error_reports/plugins/email.py'
2023-10-23T20:41:01,055   adding 'galaxy/tools/error_reports/plugins/github.py'
2023-10-23T20:41:01,057   adding 'galaxy/tools/error_reports/plugins/gitlab.py'
2023-10-23T20:41:01,058   adding 'galaxy/tools/error_reports/plugins/influxdb.py'
2023-10-23T20:41:01,059   adding 'galaxy/tools/error_reports/plugins/json.py'
2023-10-23T20:41:01,061   adding 'galaxy/tools/error_reports/plugins/sentry.py'
2023-10-23T20:41:01,062   adding 'galaxy/tools/error_reports/plugins/slack.py'
2023-10-23T20:41:01,064   adding 'galaxy/tools/expressions/__init__.py'
2023-10-23T20:41:01,065   adding 'galaxy/tools/expressions/cwlNodeEngine.js'
2023-10-23T20:41:01,066   adding 'galaxy/tools/expressions/evaluation.py'
2023-10-23T20:41:01,068   adding 'galaxy/tools/expressions/script.py'
2023-10-23T20:41:01,069   adding 'galaxy/tools/expressions/util.py'
2023-10-23T20:41:01,070   adding 'galaxy/tools/filters/__init__.py'
2023-10-23T20:41:01,073   adding 'galaxy/tools/imp_exp/__init__.py'
2023-10-23T20:41:01,074   adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml'
2023-10-23T20:41:01,075   adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml'
2023-10-23T20:41:01,076   adding 'galaxy/tools/imp_exp/export_history.py'
2023-10-23T20:41:01,078   adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml'
2023-10-23T20:41:01,079   adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py'
2023-10-23T20:41:01,083   adding 'galaxy/tools/parameters/__init__.py'
2023-10-23T20:41:01,095   adding 'galaxy/tools/parameters/basic.py'
2023-10-23T20:41:01,098   adding 'galaxy/tools/parameters/dataset_matcher.py'
2023-10-23T20:41:01,102   adding 'galaxy/tools/parameters/dynamic_options.py'
2023-10-23T20:41:01,106   adding 'galaxy/tools/parameters/grouping.py'
2023-10-23T20:41:01,108   adding 'galaxy/tools/parameters/history_query.py'
2023-10-23T20:41:01,109   adding 'galaxy/tools/parameters/input_translation.py'
2023-10-23T20:41:01,111   adding 'galaxy/tools/parameters/meta.py'
2023-10-23T20:41:01,113   adding 'galaxy/tools/parameters/sanitize.py'
2023-10-23T20:41:01,117   adding 'galaxy/tools/parameters/validation.py'
2023-10-23T20:41:01,119   adding 'galaxy/tools/parameters/wrapped.py'
2023-10-23T20:41:01,120   adding 'galaxy/tools/parameters/wrapped_json.py'
2023-10-23T20:41:01,123   adding 'galaxy/tools/search/__init__.py'
2023-10-23T20:41:01,124   adding 'galaxy/tools/util/__init__.py'
2023-10-23T20:41:01,128   adding 'galaxy/tools/util/maf_utilities.py'
2023-10-23T20:41:01,130   adding 'galaxy/tools/util/galaxyops/__init__.py'
2023-10-23T20:41:01,132   adding 'galaxy/visualization/__init__.py'
2023-10-23T20:41:01,134   adding 'galaxy/visualization/genomes.py'
2023-10-23T20:41:01,135   adding 'galaxy/visualization/data_providers/__init__.py'
2023-10-23T20:41:01,137   adding 'galaxy/visualization/data_providers/basic.py'
2023-10-23T20:41:01,138   adding 'galaxy/visualization/data_providers/cigar.py'
2023-10-23T20:41:01,145   adding 'galaxy/visualization/data_providers/genome.py'
2023-10-23T20:41:01,147   adding 'galaxy/visualization/data_providers/registry.py'
2023-10-23T20:41:01,149   adding 'galaxy/visualization/data_providers/phyloviz/__init__.py'
2023-10-23T20:41:01,151   adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py'
2023-10-23T20:41:01,153   adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py'
2023-10-23T20:41:01,154   adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py'
2023-10-23T20:41:01,155   adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py'
2023-10-23T20:41:01,157   adding 'galaxy/visualization/genome/__init__.py'
2023-10-23T20:41:01,158   adding 'galaxy/visualization/plugins/__init__.py'
2023-10-23T20:41:01,162   adding 'galaxy/visualization/plugins/config_parser.py'
2023-10-23T20:41:01,164   adding 'galaxy/visualization/plugins/plugin.py'
2023-10-23T20:41:01,166   adding 'galaxy/visualization/plugins/registry.py'
2023-10-23T20:41:01,168   adding 'galaxy/visualization/plugins/resource_parser.py'
2023-10-23T20:41:01,169   adding 'galaxy/visualization/plugins/utils.py'
2023-10-23T20:41:01,170   adding 'galaxy/visualization/tracks/__init__.py'
2023-10-23T20:41:01,172   adding 'galaxy/webhooks/__init__.py'
2023-10-23T20:41:01,174   adding 'galaxy/work/__init__.py'
2023-10-23T20:41:01,175   adding 'galaxy/work/context.py'
2023-10-23T20:41:01,177   adding 'galaxy/workflow/__init__.py'
2023-10-23T20:41:01,179   adding 'galaxy/workflow/extract.py'
2023-10-23T20:41:01,193   adding 'galaxy/workflow/modules.py'
2023-10-23T20:41:01,196   adding 'galaxy/workflow/render.py'
2023-10-23T20:41:01,199   adding 'galaxy/workflow/run.py'
2023-10-23T20:41:01,203   adding 'galaxy/workflow/run_request.py'
2023-10-23T20:41:01,206   adding 'galaxy/workflow/scheduling_manager.py'
2023-10-23T20:41:01,207   adding 'galaxy/workflow/steps.py'
2023-10-23T20:41:01,209   adding 'galaxy/workflow/trs_proxy.py'
2023-10-23T20:41:01,211   adding 'galaxy/workflow/refactor/__init__.py'
2023-10-23T20:41:01,214   adding 'galaxy/workflow/refactor/execute.py'
2023-10-23T20:41:01,216   adding 'galaxy/workflow/refactor/schema.py'
2023-10-23T20:41:01,218   adding 'galaxy/workflow/reports/__init__.py'
2023-10-23T20:41:01,219   adding 'galaxy/workflow/reports/generators/__init__.py'
2023-10-23T20:41:01,221   adding 'galaxy/workflow/reports/generators/markdown.py'
2023-10-23T20:41:01,223   adding 'galaxy/workflow/resources/__init__.py'
2023-10-23T20:41:01,224   adding 'galaxy/workflow/resources/example.py.sample'
2023-10-23T20:41:01,226   adding 'galaxy/workflow/schedulers/__init__.py'
2023-10-23T20:41:01,227   adding 'galaxy/workflow/schedulers/core.py'
2023-10-23T20:41:01,230   adding 'galaxy_ext/__init__.py'
2023-10-23T20:41:01,231   adding 'galaxy_ext/py.typed'
2023-10-23T20:41:01,232   adding 'galaxy_ext/container_monitor/__init__.py'
2023-10-23T20:41:01,233   adding 'galaxy_ext/container_monitor/monitor.py'
2023-10-23T20:41:01,235   adding 'galaxy_ext/expressions/__init__.py'
2023-10-23T20:41:01,236   adding 'galaxy_ext/expressions/handle_job.py'
2023-10-23T20:41:01,237   adding 'galaxy_ext/metadata/__init__.py'
2023-10-23T20:41:01,238   adding 'galaxy_ext/metadata/set_metadata.py'
2023-10-23T20:41:01,240   adding 'tool_shed_client/__init__.py'
2023-10-23T20:41:01,242   adding 'tool_shed_client/schema/__init__.py'
2023-10-23T20:41:01,244   adding 'galaxy_app-23.1.1.dist-info/LICENSE'
2023-10-23T20:41:01,247   adding 'galaxy_app-23.1.1.dist-info/METADATA'
2023-10-23T20:41:01,248   adding 'galaxy_app-23.1.1.dist-info/WHEEL'
2023-10-23T20:41:01,249   adding 'galaxy_app-23.1.1.dist-info/entry_points.txt'
2023-10-23T20:41:01,250   adding 'galaxy_app-23.1.1.dist-info/top_level.txt'
2023-10-23T20:41:01,260   adding 'galaxy_app-23.1.1.dist-info/RECORD'
2023-10-23T20:41:01,281   removing build/bdist.linux-armv7l/wheel
2023-10-23T20:41:01,521   Building wheel for galaxy-app (pyproject.toml): finished with status 'done'
2023-10-23T20:41:01,555   Created wheel for galaxy-app: filename=galaxy_app-23.1.1-py3-none-any.whl size=1395985 sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b
2023-10-23T20:41:01,556   Stored in directory: /tmp/pip-ephem-wheel-cache-yr9lkat8/wheels/a5/5a/7d/0b362429df386d261a4a510b821fffb8c1c584dd5e1f008f9a
2023-10-23T20:41:01,587 Successfully built galaxy-app
2023-10-23T20:41:01,631 Removed build tracker: '/tmp/pip-build-tracker-mwd5bt1y'