2023-10-24T22:17:13,630 Created temporary directory: /tmp/pip-build-tracker-a0rvdut6
2023-10-24T22:17:13,631 Initialized build tracking at /tmp/pip-build-tracker-a0rvdut6
2023-10-24T22:17:13,631 Created build tracker: /tmp/pip-build-tracker-a0rvdut6
2023-10-24T22:17:13,632 Entered build tracker: /tmp/pip-build-tracker-a0rvdut6
2023-10-24T22:17:13,633 Created temporary directory: /tmp/pip-wheel-2zzt8l5t
2023-10-24T22:17:13,636 Created temporary directory: /tmp/pip-ephem-wheel-cache-tre3w6jn
2023-10-24T22:17:13,657 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-10-24T22:17:13,661 2 location(s) to search for versions of buscolite:
2023-10-24T22:17:13,661 * https://pypi.org/simple/buscolite/
2023-10-24T22:17:13,661 * https://www.piwheels.org/simple/buscolite/
2023-10-24T22:17:13,662 Fetching project page and analyzing links: https://pypi.org/simple/buscolite/
2023-10-24T22:17:13,662 Getting page https://pypi.org/simple/buscolite/
2023-10-24T22:17:13,664 Found index url https://pypi.org/simple/
2023-10-24T22:17:13,883 Fetched page https://pypi.org/simple/buscolite/ as application/vnd.pypi.simple.v1+json
2023-10-24T22:17:13,885   Skipping link: No binaries permitted for buscolite: https://files.pythonhosted.org/packages/35/36/070f75fc59144b90f5e6ca51c6b2bc966d3b702e0bcd56c510f785670b86/buscolite-0.4.8-py3-none-any.whl (from https://pypi.org/simple/buscolite/) (requires-python:>=3.6.0)
2023-10-24T22:17:13,886   Found link https://files.pythonhosted.org/packages/6d/94/b821ee2c252992a6737e28f3e15ea5e2162560d18035ed8c0cd7f33b8fc3/buscolite-0.4.8.tar.gz (from https://pypi.org/simple/buscolite/) (requires-python:>=3.6.0), version: 0.4.8
2023-10-24T22:17:13,887   Skipping link: No binaries permitted for buscolite: https://files.pythonhosted.org/packages/00/1f/4f850471570253c62c4d7f4f5d0f85d4fcdf9eaec50f052e24071cc136e1/buscolite-0.5.1-py3-none-any.whl (from https://pypi.org/simple/buscolite/) (requires-python:>=3.6.0)
2023-10-24T22:17:13,888   Found link https://files.pythonhosted.org/packages/8b/5f/2575c8412879dbf3fb7300cd0f4eac73afba099bb08e3886a68081a366ed/buscolite-0.5.1.tar.gz (from https://pypi.org/simple/buscolite/) (requires-python:>=3.6.0), version: 0.5.1
2023-10-24T22:17:13,889 Fetching project page and analyzing links: https://www.piwheels.org/simple/buscolite/
2023-10-24T22:17:13,890 Getting page https://www.piwheels.org/simple/buscolite/
2023-10-24T22:17:13,891 Found index url https://www.piwheels.org/simple/
2023-10-24T22:17:14,051 Fetched page https://www.piwheels.org/simple/buscolite/ as text/html
2023-10-24T22:17:14,053   Skipping link: No binaries permitted for buscolite: https://www.piwheels.org/simple/buscolite/buscolite-0.4.8-py3-none-any.whl#sha256=6cb3d705569a682171f0f71bffa146ea815d8489a3e2954bd741e1e3c56e12dc (from https://www.piwheels.org/simple/buscolite/) (requires-python:>=3.6.0)
2023-10-24T22:17:14,054 Skipping link: not a file: https://www.piwheels.org/simple/buscolite/
2023-10-24T22:17:14,054 Skipping link: not a file: https://pypi.org/simple/buscolite/
2023-10-24T22:17:14,073 Given no hashes to check 1 links for project 'buscolite': discarding no candidates
2023-10-24T22:17:14,091 Collecting buscolite==0.5.1
2023-10-24T22:17:14,093   Created temporary directory: /tmp/pip-unpack-3lyijt9u
2023-10-24T22:17:14,308   Downloading buscolite-0.5.1.tar.gz (135 kB)
2023-10-24T22:17:14,440   Added buscolite==0.5.1 from https://files.pythonhosted.org/packages/8b/5f/2575c8412879dbf3fb7300cd0f4eac73afba099bb08e3886a68081a366ed/buscolite-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-a0rvdut6'
2023-10-24T22:17:14,441   Running setup.py (path:/tmp/pip-wheel-2zzt8l5t/buscolite_3530a051579b409c8623b9657ce0e356/setup.py) egg_info for package buscolite
2023-10-24T22:17:14,442   Created temporary directory: /tmp/pip-pip-egg-info-nc1eu4n1
2023-10-24T22:17:14,443   Preparing metadata (setup.py): started
2023-10-24T22:17:14,444   Running command python setup.py egg_info
2023-10-24T22:17:15,495   running egg_info
2023-10-24T22:17:15,497   creating /tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info
2023-10-24T22:17:15,521   writing /tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/PKG-INFO
2023-10-24T22:17:15,524   writing dependency_links to /tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/dependency_links.txt
2023-10-24T22:17:15,526   writing entry points to /tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/entry_points.txt
2023-10-24T22:17:15,527   writing requirements to /tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/requires.txt
2023-10-24T22:17:15,528   writing top-level names to /tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/top_level.txt
2023-10-24T22:17:15,529   writing manifest file '/tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/SOURCES.txt'
2023-10-24T22:17:15,605   reading manifest file '/tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/SOURCES.txt'
2023-10-24T22:17:15,606   reading manifest template 'MANIFEST.in'
2023-10-24T22:17:15,608   adding license file 'LICENSE.md'
2023-10-24T22:17:15,610   writing manifest file '/tmp/pip-pip-egg-info-nc1eu4n1/buscolite.egg-info/SOURCES.txt'
2023-10-24T22:17:15,718   Preparing metadata (setup.py): finished with status 'done'
2023-10-24T22:17:15,722   Source in /tmp/pip-wheel-2zzt8l5t/buscolite_3530a051579b409c8623b9657ce0e356 has version 0.5.1, which satisfies requirement buscolite==0.5.1 from https://files.pythonhosted.org/packages/8b/5f/2575c8412879dbf3fb7300cd0f4eac73afba099bb08e3886a68081a366ed/buscolite-0.5.1.tar.gz
2023-10-24T22:17:15,723   Removed buscolite==0.5.1 from https://files.pythonhosted.org/packages/8b/5f/2575c8412879dbf3fb7300cd0f4eac73afba099bb08e3886a68081a366ed/buscolite-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-a0rvdut6'
2023-10-24T22:17:15,728 Created temporary directory: /tmp/pip-unpack-clpm34pz
2023-10-24T22:17:15,729 Created temporary directory: /tmp/pip-unpack-vf1pzdh0
2023-10-24T22:17:15,735 Building wheels for collected packages: buscolite
2023-10-24T22:17:15,739   Created temporary directory: /tmp/pip-wheel-ra3zusbj
2023-10-24T22:17:15,740   Building wheel for buscolite (setup.py): started
2023-10-24T22:17:15,742   Destination directory: /tmp/pip-wheel-ra3zusbj
2023-10-24T22:17:15,742   Running command python setup.py bdist_wheel
2023-10-24T22:17:16,748   running bdist_wheel
2023-10-24T22:17:16,844   running build
2023-10-24T22:17:16,845   running build_py
2023-10-24T22:17:16,872   creating build
2023-10-24T22:17:16,873   creating build/lib
2023-10-24T22:17:16,874   creating build/lib/buscolite
2023-10-24T22:17:16,875   copying buscolite/__init__.py -> build/lib/buscolite
2023-10-24T22:17:16,877   copying buscolite/__version__.py -> build/lib/buscolite
2023-10-24T22:17:16,879   copying buscolite/utilities.py -> build/lib/buscolite
2023-10-24T22:17:16,881   copying buscolite/log.py -> build/lib/buscolite
2023-10-24T22:17:16,883   copying buscolite/busco.py -> build/lib/buscolite
2023-10-24T22:17:16,886   copying buscolite/augustus.py -> build/lib/buscolite
2023-10-24T22:17:16,887   copying buscolite/search.py -> build/lib/buscolite
2023-10-24T22:17:16,890   copying buscolite/fasta.py -> build/lib/buscolite
2023-10-24T22:17:16,892   copying buscolite/fastx.py -> build/lib/buscolite
2023-10-24T22:17:16,894   copying buscolite/gff.py -> build/lib/buscolite
2023-10-24T22:17:16,897   copying buscolite/__main__.py -> build/lib/buscolite
2023-10-24T22:17:16,899   copying buscolite/help_formatter.py -> build/lib/buscolite
2023-10-24T22:17:16,901   running egg_info
2023-10-24T22:17:16,957   writing buscolite.egg-info/PKG-INFO
2023-10-24T22:17:16,960   writing dependency_links to buscolite.egg-info/dependency_links.txt
2023-10-24T22:17:16,961   writing entry points to buscolite.egg-info/entry_points.txt
2023-10-24T22:17:16,962   writing requirements to buscolite.egg-info/requires.txt
2023-10-24T22:17:16,963   writing top-level names to buscolite.egg-info/top_level.txt
2023-10-24T22:17:16,990   reading manifest file 'buscolite.egg-info/SOURCES.txt'
2023-10-24T22:17:16,992   reading manifest template 'MANIFEST.in'
2023-10-24T22:17:16,993   adding license file 'LICENSE.md'
2023-10-24T22:17:16,996   writing manifest file 'buscolite.egg-info/SOURCES.txt'
2023-10-24T22:17:16,998   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'buscolite.data' is absent from the `packages` configuration.
2023-10-24T22:17:16,999   !!

2023-10-24T22:17:17,000           ********************************************************************************
2023-10-24T22:17:17,000           ############################
2023-10-24T22:17:17,001           # Package would be ignored #
2023-10-24T22:17:17,001           ############################
2023-10-24T22:17:17,001           Python recognizes 'buscolite.data' as an importable package[^1],
2023-10-24T22:17:17,002           but it is absent from setuptools' `packages` configuration.

2023-10-24T22:17:17,004           This leads to an ambiguous overall configuration. If you want to distribute this
2023-10-24T22:17:17,004           package, please make sure that 'buscolite.data' is explicitly added
2023-10-24T22:17:17,005           to the `packages` configuration field.

2023-10-24T22:17:17,006           Alternatively, you can also rely on setuptools' discovery methods
2023-10-24T22:17:17,006           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-10-24T22:17:17,007           instead of `find_packages(...)`/`find:`).

2023-10-24T22:17:17,008           You can read more about "package discovery" on setuptools documentation page:

2023-10-24T22:17:17,010           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-10-24T22:17:17,011           If you don't want 'buscolite.data' to be distributed and are
2023-10-24T22:17:17,012           already explicitly excluding 'buscolite.data' via
2023-10-24T22:17:17,012           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-10-24T22:17:17,013           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-10-24T22:17:17,013           combination with a more fine grained `package-data` configuration.

2023-10-24T22:17:17,015           You can read more about "package data files" on setuptools documentation page:

2023-10-24T22:17:17,016           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-10-24T22:17:17,017           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-10-24T22:17:17,017                 even if it does not contain any `.py` files.
2023-10-24T22:17:17,018                 On the other hand, currently there is no concept of package data
2023-10-24T22:17:17,018                 directory, all directories are treated like packages.
2023-10-24T22:17:17,019           ********************************************************************************

2023-10-24T22:17:17,020   !!
2023-10-24T22:17:17,021     check.warn(importable)
2023-10-24T22:17:17,021   creating build/lib/buscolite/data
2023-10-24T22:17:17,022   copying buscolite/data/EOG092C0B3U.prfl -> build/lib/buscolite/data
2023-10-24T22:17:17,022   copying buscolite/data/HsDHC.prfl -> build/lib/buscolite/data
2023-10-24T22:17:17,023   copying buscolite/data/busco_test.fa -> build/lib/buscolite/data
2023-10-24T22:17:17,023   copying buscolite/data/example.fa -> build/lib/buscolite/data
2023-10-24T22:17:17,045   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-10-24T22:17:17,046   !!

2023-10-24T22:17:17,047           ********************************************************************************
2023-10-24T22:17:17,048           Please avoid running ``setup.py`` directly.
2023-10-24T22:17:17,048           Instead, use pypa/build, pypa/installer or other
2023-10-24T22:17:17,049           standards-based tools.

2023-10-24T22:17:17,050           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-10-24T22:17:17,051           ********************************************************************************

2023-10-24T22:17:17,052   !!
2023-10-24T22:17:17,052     self.initialize_options()
2023-10-24T22:17:17,071   installing to build/bdist.linux-armv7l/wheel
2023-10-24T22:17:17,072   running install
2023-10-24T22:17:17,096   running install_lib
2023-10-24T22:17:17,121   creating build/bdist.linux-armv7l
2023-10-24T22:17:17,121   creating build/bdist.linux-armv7l/wheel
2023-10-24T22:17:17,123   creating build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,124   creating build/bdist.linux-armv7l/wheel/buscolite/data
2023-10-24T22:17:17,125   copying build/lib/buscolite/data/example.fa -> build/bdist.linux-armv7l/wheel/buscolite/data
2023-10-24T22:17:17,127   copying build/lib/buscolite/data/EOG092C0B3U.prfl -> build/bdist.linux-armv7l/wheel/buscolite/data
2023-10-24T22:17:17,131   copying build/lib/buscolite/data/busco_test.fa -> build/bdist.linux-armv7l/wheel/buscolite/data
2023-10-24T22:17:17,133   copying build/lib/buscolite/data/HsDHC.prfl -> build/bdist.linux-armv7l/wheel/buscolite/data
2023-10-24T22:17:17,140   copying build/lib/buscolite/__init__.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,142   copying build/lib/buscolite/__version__.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,144   copying build/lib/buscolite/utilities.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,146   copying build/lib/buscolite/log.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,148   copying build/lib/buscolite/busco.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,150   copying build/lib/buscolite/augustus.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,152   copying build/lib/buscolite/search.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,155   copying build/lib/buscolite/fasta.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,158   copying build/lib/buscolite/fastx.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,160   copying build/lib/buscolite/gff.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,163   copying build/lib/buscolite/__main__.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,165   copying build/lib/buscolite/help_formatter.py -> build/bdist.linux-armv7l/wheel/buscolite
2023-10-24T22:17:17,168   running install_egg_info
2023-10-24T22:17:17,198   Copying buscolite.egg-info to build/bdist.linux-armv7l/wheel/buscolite-0.5.1-py3.11.egg-info
2023-10-24T22:17:17,210   running install_scripts
2023-10-24T22:17:17,225   creating build/bdist.linux-armv7l/wheel/buscolite-0.5.1.dist-info/WHEEL
2023-10-24T22:17:17,227   creating '/tmp/pip-wheel-ra3zusbj/buscolite-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-10-24T22:17:17,230   adding 'buscolite/__init__.py'
2023-10-24T22:17:17,232   adding 'buscolite/__main__.py'
2023-10-24T22:17:17,233   adding 'buscolite/__version__.py'
2023-10-24T22:17:17,235   adding 'buscolite/augustus.py'
2023-10-24T22:17:17,238   adding 'buscolite/busco.py'
2023-10-24T22:17:17,240   adding 'buscolite/fasta.py'
2023-10-24T22:17:17,243   adding 'buscolite/fastx.py'
2023-10-24T22:17:17,246   adding 'buscolite/gff.py'
2023-10-24T22:17:17,248   adding 'buscolite/help_formatter.py'
2023-10-24T22:17:17,249   adding 'buscolite/log.py'
2023-10-24T22:17:17,252   adding 'buscolite/search.py'
2023-10-24T22:17:17,255   adding 'buscolite/utilities.py'
2023-10-24T22:17:17,281   adding 'buscolite/data/EOG092C0B3U.prfl'
2023-10-24T22:17:17,330   adding 'buscolite/data/HsDHC.prfl'
2023-10-24T22:17:17,334   adding 'buscolite/data/busco_test.fa'
2023-10-24T22:17:17,340   adding 'buscolite/data/example.fa'
2023-10-24T22:17:17,343   adding 'buscolite-0.5.1.dist-info/LICENSE.md'
2023-10-24T22:17:17,344   adding 'buscolite-0.5.1.dist-info/METADATA'
2023-10-24T22:17:17,346   adding 'buscolite-0.5.1.dist-info/WHEEL'
2023-10-24T22:17:17,347   adding 'buscolite-0.5.1.dist-info/entry_points.txt'
2023-10-24T22:17:17,348   adding 'buscolite-0.5.1.dist-info/top_level.txt'
2023-10-24T22:17:17,350   adding 'buscolite-0.5.1.dist-info/RECORD'
2023-10-24T22:17:17,354   removing build/bdist.linux-armv7l/wheel
2023-10-24T22:17:17,472   Building wheel for buscolite (setup.py): finished with status 'done'
2023-10-24T22:17:17,476   Created wheel for buscolite: filename=buscolite-0.5.1-py3-none-any.whl size=139549 sha256=d0a8a2472df33f8e3c6e1b0e852f126136720fdfe566fc4ab3db4a80f9ae5db5
2023-10-24T22:17:17,477   Stored in directory: /tmp/pip-ephem-wheel-cache-tre3w6jn/wheels/b1/f3/a9/6e803580a1a0c23d5d6b365f54850432561cd9ceb92e458c3f
2023-10-24T22:17:17,487 Successfully built buscolite
2023-10-24T22:17:17,495 Removed build tracker: '/tmp/pip-build-tracker-a0rvdut6'