2023-10-26T01:44:48,155 Created temporary directory: /tmp/pip-build-tracker-d9ltnn9c 2023-10-26T01:44:48,156 Initialized build tracking at /tmp/pip-build-tracker-d9ltnn9c 2023-10-26T01:44:48,156 Created build tracker: /tmp/pip-build-tracker-d9ltnn9c 2023-10-26T01:44:48,157 Entered build tracker: /tmp/pip-build-tracker-d9ltnn9c 2023-10-26T01:44:48,157 Created temporary directory: /tmp/pip-wheel-fpoctiqy 2023-10-26T01:44:48,161 Created temporary directory: /tmp/pip-ephem-wheel-cache-thl9g6f1 2023-10-26T01:44:48,182 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-26T01:44:48,186 2 location(s) to search for versions of microhapdb: 2023-10-26T01:44:48,186 * https://pypi.org/simple/microhapdb/ 2023-10-26T01:44:48,186 * https://www.piwheels.org/simple/microhapdb/ 2023-10-26T01:44:48,187 Fetching project page and analyzing links: https://pypi.org/simple/microhapdb/ 2023-10-26T01:44:48,188 Getting page https://pypi.org/simple/microhapdb/ 2023-10-26T01:44:48,189 Found index url https://pypi.org/simple/ 2023-10-26T01:44:48,405 Fetched page https://pypi.org/simple/microhapdb/ as application/vnd.pypi.simple.v1+json 2023-10-26T01:44:48,408 Found link https://files.pythonhosted.org/packages/ee/b9/90172ce0bd8dc37c5526c0674e88001a1c8dbc79067b860e4ac6b306ecf3/microhapdb-0.1.0.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.1.0 2023-10-26T01:44:48,409 Found link https://files.pythonhosted.org/packages/aa/72/2afb13e19bd12c8b2f01c4bf90765e286d187c9f8bdda7023018d30cdb2e/microhapdb-0.1.1.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.1.1 2023-10-26T01:44:48,409 Found link https://files.pythonhosted.org/packages/1a/17/225f5ce31fdad8554b08a97c7777ed210156768868b3be7b82d85dff86d3/microhapdb-0.1.2.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.1.2 2023-10-26T01:44:48,410 Found link https://files.pythonhosted.org/packages/79/93/42989a5c94cff6e2be24185e240319ad7bd1402858d944efa81e52ae3e5a/microhapdb-0.2.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.2 2023-10-26T01:44:48,411 Found link https://files.pythonhosted.org/packages/50/45/d65815c6c175568cf697302430ebf30bf5dab5f224c218c94e1e663af338/microhapdb-0.4.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.4 2023-10-26T01:44:48,411 Found link https://files.pythonhosted.org/packages/f8/37/a2430a19c7329b2f7b6c448f6f77f2856cdeb2a96ef28cf2ac252f010bee/microhapdb-0.4.1.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.4.1 2023-10-26T01:44:48,412 Found link https://files.pythonhosted.org/packages/df/d3/2e76b9ddd603a07ec37966e91dc1a01ca6207a5b51e90e8b59010d3bd2db/microhapdb-0.4.3.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.4.3 2023-10-26T01:44:48,413 Found link https://files.pythonhosted.org/packages/87/8d/6680f68c36ab955b2ea417ddd235181fa4dec042a89dff156b693ccc4632/microhapdb-0.7rc1.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.7rc1 2023-10-26T01:44:48,414 Found link https://files.pythonhosted.org/packages/2a/d8/af81dbd145449f53f85ef8e7b566c37a1404cbf04e96c57eafdc3eab3416/microhapdb-0.7.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.7 2023-10-26T01:44:48,414 Found link https://files.pythonhosted.org/packages/ce/88/18a43eb68cbc4f7138c4487357dff70804f333a539c9b860d694f29fc20f/microhapdb-0.9.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.9 2023-10-26T01:44:48,415 Found link https://files.pythonhosted.org/packages/59/65/3f7eb2ad92aad6974e50f5712184efb1d8f24bc2bf11f5cca298d9247b43/microhapdb-0.10.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.10 2023-10-26T01:44:48,416 Found link https://files.pythonhosted.org/packages/af/81/237a3bd05d78138ca75d525f4d49c74d2244e1adbae88a8a237655722b46/microhapdb-0.10.1.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.10.1 2023-10-26T01:44:48,417 Found link https://files.pythonhosted.org/packages/a7/25/187c32ed3989a8c9d1634336ddfc27c3c671a3ace77eb07572f70d3e80d7/microhapdb-0.11.tar.gz (from https://pypi.org/simple/microhapdb/), version: 0.11 2023-10-26T01:44:48,418 Fetching project page and analyzing links: https://www.piwheels.org/simple/microhapdb/ 2023-10-26T01:44:48,418 Getting page https://www.piwheels.org/simple/microhapdb/ 2023-10-26T01:44:48,420 Found index url https://www.piwheels.org/simple/ 2023-10-26T01:44:48,588 Fetched page https://www.piwheels.org/simple/microhapdb/ as text/html 2023-10-26T01:44:48,592 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.10.1-py3-none-any.whl#sha256=8ae7beab7c482545282850e553ff1f59ef29d789b24727de226dacc21a232d1d (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,592 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.10-py3-none-any.whl#sha256=7c7d05df7360e2cba7a6ca007b6d42f6c7a3d5b6b91ddd2a2fc917aadc4884bc (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,593 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.9-py3-none-any.whl#sha256=489efe16019e247dd5155f961eb6b9c76b77a453abb0075f45a900bc7cb06995 (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,593 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.7-py3-none-any.whl#sha256=ffe13337fcdc037eb816d8c3b2f57e39ca471ee3ead5ba49a66d4dd0f5f9e6d9 (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,594 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.7rc1-py3-none-any.whl#sha256=f2d5893791a08ef67b280b72732fe231d767f0a8572992036bd83818edf924fa (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,594 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.4.3-py3-none-any.whl#sha256=7d8040588f572616f753f06cb829ad8f002a267a2656cbc6e7e09b466d6f52df (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,595 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.4.1-py3-none-any.whl#sha256=a92f6453b9b18d3582c80d6aff80ea2c17a08bd7642c7c09cb410424f83c5d47 (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,595 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.4-py3-none-any.whl#sha256=88c02e5b9587d96de30d2c84c6b1dfd5a2a700fb622acadaf8dbe1d9bc06471e (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,596 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.2-py3-none-any.whl#sha256=c418728a24013838b304b761cb75b3570bc65edc0ce9885d0d5d9d2d1ace8cb4 (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,597 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.1.2-py3-none-any.whl#sha256=bc4af643ad1cc8004d29be98c89dca8079570732c2d928212c3c29e2c5e7c628 (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,597 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.1.1-py3-none-any.whl#sha256=a624754af6799a07ec6f8ff071b813408eb663a9e0540f7eb5a409cc8298c74d (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,598 Skipping link: No binaries permitted for microhapdb: https://www.piwheels.org/simple/microhapdb/microhapdb-0.1.0-py3-none-any.whl#sha256=8dca684951b11e03b1b1b391060c778c4011e80153ce3f4d3f23645de5421f0b (from https://www.piwheels.org/simple/microhapdb/) 2023-10-26T01:44:48,598 Skipping link: not a file: https://www.piwheels.org/simple/microhapdb/ 2023-10-26T01:44:48,599 Skipping link: not a file: https://pypi.org/simple/microhapdb/ 2023-10-26T01:44:48,619 Given no hashes to check 1 links for project 'microhapdb': discarding no candidates 2023-10-26T01:44:48,637 Collecting microhapdb==0.11 2023-10-26T01:44:48,640 Created temporary directory: /tmp/pip-unpack-3dn708k1 2023-10-26T01:44:48,863 Downloading microhapdb-0.11.tar.gz (6.5 MB) 2023-10-26T01:44:50,424 Added microhapdb==0.11 from https://files.pythonhosted.org/packages/a7/25/187c32ed3989a8c9d1634336ddfc27c3c671a3ace77eb07572f70d3e80d7/microhapdb-0.11.tar.gz to build tracker '/tmp/pip-build-tracker-d9ltnn9c' 2023-10-26T01:44:50,425 Running setup.py (path:/tmp/pip-wheel-fpoctiqy/microhapdb_324028cd8c224ac195e7b5ede47f1cf2/setup.py) egg_info for package microhapdb 2023-10-26T01:44:50,426 Created temporary directory: /tmp/pip-pip-egg-info-n3v09564 2023-10-26T01:44:50,427 Preparing metadata (setup.py): started 2023-10-26T01:44:50,428 Running command python setup.py egg_info 2023-10-26T01:44:51,497 running egg_info 2023-10-26T01:44:51,499 creating /tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info 2023-10-26T01:44:51,524 writing /tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/PKG-INFO 2023-10-26T01:44:51,528 writing dependency_links to /tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/dependency_links.txt 2023-10-26T01:44:51,530 writing entry points to /tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/entry_points.txt 2023-10-26T01:44:51,531 writing requirements to /tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/requires.txt 2023-10-26T01:44:51,532 writing top-level names to /tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/top_level.txt 2023-10-26T01:44:51,534 writing manifest file '/tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/SOURCES.txt' 2023-10-26T01:44:51,588 reading manifest file '/tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/SOURCES.txt' 2023-10-26T01:44:51,590 reading manifest template 'MANIFEST.in' 2023-10-26T01:44:51,593 adding license file 'LICENSE.txt' 2023-10-26T01:44:51,595 writing manifest file '/tmp/pip-pip-egg-info-n3v09564/microhapdb.egg-info/SOURCES.txt' 2023-10-26T01:44:51,704 Preparing metadata (setup.py): finished with status 'done' 2023-10-26T01:44:51,708 Source in /tmp/pip-wheel-fpoctiqy/microhapdb_324028cd8c224ac195e7b5ede47f1cf2 has version 0.11, which satisfies requirement microhapdb==0.11 from https://files.pythonhosted.org/packages/a7/25/187c32ed3989a8c9d1634336ddfc27c3c671a3ace77eb07572f70d3e80d7/microhapdb-0.11.tar.gz 2023-10-26T01:44:51,709 Removed microhapdb==0.11 from https://files.pythonhosted.org/packages/a7/25/187c32ed3989a8c9d1634336ddfc27c3c671a3ace77eb07572f70d3e80d7/microhapdb-0.11.tar.gz from build tracker '/tmp/pip-build-tracker-d9ltnn9c' 2023-10-26T01:44:51,714 Created temporary directory: /tmp/pip-unpack-803aru__ 2023-10-26T01:44:51,715 Created temporary directory: /tmp/pip-unpack-h2_7bwb_ 2023-10-26T01:44:51,720 Building wheels for collected packages: microhapdb 2023-10-26T01:44:51,724 Created temporary directory: /tmp/pip-wheel-moygkhpq 2023-10-26T01:44:51,725 Building wheel for microhapdb (setup.py): started 2023-10-26T01:44:51,726 Destination directory: /tmp/pip-wheel-moygkhpq 2023-10-26T01:44:51,727 Running command python setup.py bdist_wheel 2023-10-26T01:44:52,754 running bdist_wheel 2023-10-26T01:44:52,849 running build 2023-10-26T01:44:52,850 running build_py 2023-10-26T01:44:52,854 creating build 2023-10-26T01:44:52,855 creating build/lib 2023-10-26T01:44:52,856 creating build/lib/microhapdb 2023-10-26T01:44:52,857 copying microhapdb/__init__.py -> build/lib/microhapdb 2023-10-26T01:44:52,859 copying microhapdb/nomenclature.py -> build/lib/microhapdb 2023-10-26T01:44:52,861 copying microhapdb/conftest.py -> build/lib/microhapdb 2023-10-26T01:44:52,863 copying microhapdb/tables.py -> build/lib/microhapdb 2023-10-26T01:44:52,865 copying microhapdb/marker.py -> build/lib/microhapdb 2023-10-26T01:44:52,867 copying microhapdb/_version.py -> build/lib/microhapdb 2023-10-26T01:44:52,869 copying microhapdb/population.py -> build/lib/microhapdb 2023-10-26T01:44:52,871 copying microhapdb/panel.py -> build/lib/microhapdb 2023-10-26T01:44:52,873 creating build/lib/microhapdb/cli 2023-10-26T01:44:52,874 copying microhapdb/cli/__init__.py -> build/lib/microhapdb/cli 2023-10-26T01:44:52,877 copying microhapdb/cli/marker.py -> build/lib/microhapdb/cli 2023-10-26T01:44:52,879 copying microhapdb/cli/lookup.py -> build/lib/microhapdb/cli 2023-10-26T01:44:52,880 copying microhapdb/cli/summarize.py -> build/lib/microhapdb/cli 2023-10-26T01:44:52,882 copying microhapdb/cli/population.py -> build/lib/microhapdb/cli 2023-10-26T01:44:52,884 copying microhapdb/cli/frequency.py -> build/lib/microhapdb/cli 2023-10-26T01:44:52,886 creating build/lib/microhapdb/tests 2023-10-26T01:44:52,887 copying microhapdb/tests/test_marker.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,890 copying microhapdb/tests/test_population.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,892 copying microhapdb/tests/test_nomenclature.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,894 copying microhapdb/tests/test_frequency.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,896 copying microhapdb/tests/test_repeats.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,897 copying microhapdb/tests/test_retrieve.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,899 copying microhapdb/tests/test_cli.py -> build/lib/microhapdb/tests 2023-10-26T01:44:52,902 running egg_info 2023-10-26T01:44:52,957 writing microhapdb.egg-info/PKG-INFO 2023-10-26T01:44:52,960 writing dependency_links to microhapdb.egg-info/dependency_links.txt 2023-10-26T01:44:52,961 writing entry points to microhapdb.egg-info/entry_points.txt 2023-10-26T01:44:52,962 writing requirements to microhapdb.egg-info/requires.txt 2023-10-26T01:44:52,963 writing top-level names to microhapdb.egg-info/top_level.txt 2023-10-26T01:44:52,991 reading manifest file 'microhapdb.egg-info/SOURCES.txt' 2023-10-26T01:44:52,994 reading manifest template 'MANIFEST.in' 2023-10-26T01:44:52,996 adding license file 'LICENSE.txt' 2023-10-26T01:44:52,999 writing manifest file 'microhapdb.egg-info/SOURCES.txt' 2023-10-26T01:44:53,001 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'microhapdb.data' is absent from the `packages` configuration. 2023-10-26T01:44:53,002 !! 2023-10-26T01:44:53,003 ******************************************************************************** 2023-10-26T01:44:53,004 ############################ 2023-10-26T01:44:53,004 # Package would be ignored # 2023-10-26T01:44:53,005 ############################ 2023-10-26T01:44:53,005 Python recognizes 'microhapdb.data' as an importable package[^1], 2023-10-26T01:44:53,006 but it is absent from setuptools' `packages` configuration. 2023-10-26T01:44:53,007 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T01:44:53,007 package, please make sure that 'microhapdb.data' is explicitly added 2023-10-26T01:44:53,008 to the `packages` configuration field. 2023-10-26T01:44:53,009 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T01:44:53,010 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T01:44:53,010 instead of `find_packages(...)`/`find:`). 2023-10-26T01:44:53,011 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T01:44:53,012 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T01:44:53,014 If you don't want 'microhapdb.data' to be distributed and are 2023-10-26T01:44:53,014 already explicitly excluding 'microhapdb.data' via 2023-10-26T01:44:53,015 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T01:44:53,015 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T01:44:53,016 combination with a more fine grained `package-data` configuration. 2023-10-26T01:44:53,017 You can read more about "package data files" on setuptools documentation page: 2023-10-26T01:44:53,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T01:44:53,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T01:44:53,021 even if it does not contain any `.py` files. 2023-10-26T01:44:53,021 On the other hand, currently there is no concept of package data 2023-10-26T01:44:53,022 directory, all directories are treated like packages. 2023-10-26T01:44:53,022 ******************************************************************************** 2023-10-26T01:44:53,023 !! 2023-10-26T01:44:53,024 check.warn(importable) 2023-10-26T01:44:53,024 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'microhapdb.tests.data' is absent from the `packages` configuration. 2023-10-26T01:44:53,024 !! 2023-10-26T01:44:53,025 ******************************************************************************** 2023-10-26T01:44:53,026 ############################ 2023-10-26T01:44:53,026 # Package would be ignored # 2023-10-26T01:44:53,027 ############################ 2023-10-26T01:44:53,027 Python recognizes 'microhapdb.tests.data' as an importable package[^1], 2023-10-26T01:44:53,028 but it is absent from setuptools' `packages` configuration. 2023-10-26T01:44:53,029 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T01:44:53,029 package, please make sure that 'microhapdb.tests.data' is explicitly added 2023-10-26T01:44:53,029 to the `packages` configuration field. 2023-10-26T01:44:53,030 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T01:44:53,031 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T01:44:53,031 instead of `find_packages(...)`/`find:`). 2023-10-26T01:44:53,032 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T01:44:53,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T01:44:53,035 If you don't want 'microhapdb.tests.data' to be distributed and are 2023-10-26T01:44:53,036 already explicitly excluding 'microhapdb.tests.data' via 2023-10-26T01:44:53,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T01:44:53,037 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T01:44:53,038 combination with a more fine grained `package-data` configuration. 2023-10-26T01:44:53,039 You can read more about "package data files" on setuptools documentation page: 2023-10-26T01:44:53,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T01:44:53,042 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T01:44:53,042 even if it does not contain any `.py` files. 2023-10-26T01:44:53,043 On the other hand, currently there is no concept of package data 2023-10-26T01:44:53,044 directory, all directories are treated like packages. 2023-10-26T01:44:53,044 ******************************************************************************** 2023-10-26T01:44:53,068 !! 2023-10-26T01:44:53,088 check.warn(importable) 2023-10-26T01:44:53,103 creating build/lib/microhapdb/data 2023-10-26T01:44:53,105 copying microhapdb/data/frequency.csv.gz -> build/lib/microhapdb/data 2023-10-26T01:44:53,106 copying microhapdb/data/indels.csv -> build/lib/microhapdb/data 2023-10-26T01:44:53,108 copying microhapdb/data/marker-aes.csv -> build/lib/microhapdb/data 2023-10-26T01:44:53,144 copying microhapdb/data/marker.csv -> build/lib/microhapdb/data 2023-10-26T01:44:53,156 copying microhapdb/data/merged.csv -> build/lib/microhapdb/data 2023-10-26T01:44:53,159 copying microhapdb/data/population.csv -> build/lib/microhapdb/data 2023-10-26T01:44:53,162 copying microhapdb/data/repeats.csv -> build/lib/microhapdb/data 2023-10-26T01:44:53,165 creating build/lib/microhapdb/tests/data 2023-10-26T01:44:53,166 copying microhapdb/tests/data/multi2.tsv -> build/lib/microhapdb/tests/data 2023-10-26T01:44:53,168 copying microhapdb/tests/data/panel-alpha.fasta -> build/lib/microhapdb/tests/data 2023-10-26T01:44:53,171 copying microhapdb/tests/data/panel-beta.fasta -> build/lib/microhapdb/tests/data 2023-10-26T01:44:53,175 UPDATING build/lib/microhapdb/_version.py 2023-10-26T01:44:53,177 set build/lib/microhapdb/_version.py to '0.11' 2023-10-26T01:44:53,202 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-26T01:44:53,202 !! 2023-10-26T01:44:53,203 ******************************************************************************** 2023-10-26T01:44:53,204 Please avoid running ``setup.py`` directly. 2023-10-26T01:44:53,204 Instead, use pypa/build, pypa/installer or other 2023-10-26T01:44:53,205 standards-based tools. 2023-10-26T01:44:53,205 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-26T01:44:53,206 ******************************************************************************** 2023-10-26T01:44:53,207 !! 2023-10-26T01:44:53,207 self.initialize_options() 2023-10-26T01:44:53,229 installing to build/bdist.linux-armv7l/wheel 2023-10-26T01:44:53,230 running install 2023-10-26T01:44:53,255 running install_lib 2023-10-26T01:44:53,279 creating build/bdist.linux-armv7l 2023-10-26T01:44:53,280 creating build/bdist.linux-armv7l/wheel 2023-10-26T01:44:53,282 creating build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,284 creating build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,285 copying build/lib/microhapdb/data/merged.csv -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,288 copying build/lib/microhapdb/data/marker.csv -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,301 copying build/lib/microhapdb/data/population.csv -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,303 copying build/lib/microhapdb/data/frequency.csv.gz -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,387 copying build/lib/microhapdb/data/repeats.csv -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,389 copying build/lib/microhapdb/data/marker-aes.csv -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,425 copying build/lib/microhapdb/data/indels.csv -> build/bdist.linux-armv7l/wheel/microhapdb/data 2023-10-26T01:44:53,426 copying build/lib/microhapdb/__init__.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,428 copying build/lib/microhapdb/nomenclature.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,431 creating build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,432 copying build/lib/microhapdb/cli/__init__.py -> build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,434 copying build/lib/microhapdb/cli/marker.py -> build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,436 copying build/lib/microhapdb/cli/lookup.py -> build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,438 copying build/lib/microhapdb/cli/summarize.py -> build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,440 copying build/lib/microhapdb/cli/population.py -> build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,441 copying build/lib/microhapdb/cli/frequency.py -> build/bdist.linux-armv7l/wheel/microhapdb/cli 2023-10-26T01:44:53,444 copying build/lib/microhapdb/conftest.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,445 copying build/lib/microhapdb/tables.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,447 copying build/lib/microhapdb/marker.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,450 copying build/lib/microhapdb/_version.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,452 creating build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,454 creating build/bdist.linux-armv7l/wheel/microhapdb/tests/data 2023-10-26T01:44:53,454 copying build/lib/microhapdb/tests/data/panel-beta.fasta -> build/bdist.linux-armv7l/wheel/microhapdb/tests/data 2023-10-26T01:44:53,457 copying build/lib/microhapdb/tests/data/multi2.tsv -> build/bdist.linux-armv7l/wheel/microhapdb/tests/data 2023-10-26T01:44:53,459 copying build/lib/microhapdb/tests/data/panel-alpha.fasta -> build/bdist.linux-armv7l/wheel/microhapdb/tests/data 2023-10-26T01:44:53,461 copying build/lib/microhapdb/tests/test_marker.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,464 copying build/lib/microhapdb/tests/test_population.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,466 copying build/lib/microhapdb/tests/test_nomenclature.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,468 copying build/lib/microhapdb/tests/test_frequency.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,470 copying build/lib/microhapdb/tests/test_repeats.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,472 copying build/lib/microhapdb/tests/test_retrieve.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,473 copying build/lib/microhapdb/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/microhapdb/tests 2023-10-26T01:44:53,476 copying build/lib/microhapdb/population.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,478 copying build/lib/microhapdb/panel.py -> build/bdist.linux-armv7l/wheel/microhapdb 2023-10-26T01:44:53,480 running install_egg_info 2023-10-26T01:44:53,510 Copying microhapdb.egg-info to build/bdist.linux-armv7l/wheel/microhapdb-0.11-py3.11.egg-info 2023-10-26T01:44:53,523 running install_scripts 2023-10-26T01:44:53,538 creating build/bdist.linux-armv7l/wheel/microhapdb-0.11.dist-info/WHEEL 2023-10-26T01:44:53,541 creating '/tmp/pip-wheel-moygkhpq/microhapdb-0.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-26T01:44:53,543 adding 'microhapdb/__init__.py' 2023-10-26T01:44:53,545 adding 'microhapdb/_version.py' 2023-10-26T01:44:53,546 adding 'microhapdb/conftest.py' 2023-10-26T01:44:53,549 adding 'microhapdb/marker.py' 2023-10-26T01:44:53,550 adding 'microhapdb/nomenclature.py' 2023-10-26T01:44:53,552 adding 'microhapdb/panel.py' 2023-10-26T01:44:53,554 adding 'microhapdb/population.py' 2023-10-26T01:44:53,555 adding 'microhapdb/tables.py' 2023-10-26T01:44:53,558 adding 'microhapdb/cli/__init__.py' 2023-10-26T01:44:53,559 adding 'microhapdb/cli/frequency.py' 2023-10-26T01:44:53,560 adding 'microhapdb/cli/lookup.py' 2023-10-26T01:44:53,562 adding 'microhapdb/cli/marker.py' 2023-10-26T01:44:53,564 adding 'microhapdb/cli/population.py' 2023-10-26T01:44:53,565 adding 'microhapdb/cli/summarize.py' 2023-10-26T01:44:54,242 adding 'microhapdb/data/frequency.csv.gz' 2023-10-26T01:44:54,290 adding 'microhapdb/data/indels.csv' 2023-10-26T01:44:54,609 adding 'microhapdb/data/marker-aes.csv' 2023-10-26T01:44:54,729 adding 'microhapdb/data/marker.csv' 2023-10-26T01:44:54,737 adding 'microhapdb/data/merged.csv' 2023-10-26T01:44:54,739 adding 'microhapdb/data/population.csv' 2023-10-26T01:44:54,745 adding 'microhapdb/data/repeats.csv' 2023-10-26T01:44:54,749 adding 'microhapdb/tests/test_cli.py' 2023-10-26T01:44:54,751 adding 'microhapdb/tests/test_frequency.py' 2023-10-26T01:44:54,755 adding 'microhapdb/tests/test_marker.py' 2023-10-26T01:44:54,757 adding 'microhapdb/tests/test_nomenclature.py' 2023-10-26T01:44:54,759 adding 'microhapdb/tests/test_population.py' 2023-10-26T01:44:54,760 adding 'microhapdb/tests/test_repeats.py' 2023-10-26T01:44:54,761 adding 'microhapdb/tests/test_retrieve.py' 2023-10-26T01:44:54,763 adding 'microhapdb/tests/data/multi2.tsv' 2023-10-26T01:44:54,766 adding 'microhapdb/tests/data/panel-alpha.fasta' 2023-10-26T01:44:54,773 adding 'microhapdb/tests/data/panel-beta.fasta' 2023-10-26T01:44:54,775 adding 'microhapdb-0.11.dist-info/LICENSE.txt' 2023-10-26T01:44:54,776 adding 'microhapdb-0.11.dist-info/METADATA' 2023-10-26T01:44:54,777 adding 'microhapdb-0.11.dist-info/WHEEL' 2023-10-26T01:44:54,778 adding 'microhapdb-0.11.dist-info/entry_points.txt' 2023-10-26T01:44:54,779 adding 'microhapdb-0.11.dist-info/top_level.txt' 2023-10-26T01:44:54,779 adding 'microhapdb-0.11.dist-info/zip-safe' 2023-10-26T01:44:54,781 adding 'microhapdb-0.11.dist-info/RECORD' 2023-10-26T01:44:54,864 removing build/bdist.linux-armv7l/wheel 2023-10-26T01:44:54,990 Building wheel for microhapdb (setup.py): finished with status 'done' 2023-10-26T01:44:55,068 Created wheel for microhapdb: filename=microhapdb-0.11-py3-none-any.whl size=6513239 sha256=22cdfcd47e47c6bba89bcfe978ff124b92bd5824a6817ca8cc49944f48aa39b4 2023-10-26T01:44:55,070 Stored in directory: /tmp/pip-ephem-wheel-cache-thl9g6f1/wheels/a6/cc/97/5fc0990e1543f69d9a66ff3b74fe316700b0885f5245133788 2023-10-26T01:44:55,083 Successfully built microhapdb 2023-10-26T01:44:55,243 Removed build tracker: '/tmp/pip-build-tracker-d9ltnn9c'