2023-10-26T17:36:29,493 Created temporary directory: /tmp/pip-build-tracker-wk2oxte9 2023-10-26T17:36:29,494 Initialized build tracking at /tmp/pip-build-tracker-wk2oxte9 2023-10-26T17:36:29,494 Created build tracker: /tmp/pip-build-tracker-wk2oxte9 2023-10-26T17:36:29,495 Entered build tracker: /tmp/pip-build-tracker-wk2oxte9 2023-10-26T17:36:29,496 Created temporary directory: /tmp/pip-wheel-e6113gf8 2023-10-26T17:36:29,499 Created temporary directory: /tmp/pip-ephem-wheel-cache-1kk8fp54 2023-10-26T17:36:29,520 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-26T17:36:29,524 2 location(s) to search for versions of abutils: 2023-10-26T17:36:29,524 * https://pypi.org/simple/abutils/ 2023-10-26T17:36:29,524 * https://www.piwheels.org/simple/abutils/ 2023-10-26T17:36:29,525 Fetching project page and analyzing links: https://pypi.org/simple/abutils/ 2023-10-26T17:36:29,526 Getting page https://pypi.org/simple/abutils/ 2023-10-26T17:36:29,527 Found index url https://pypi.org/simple/ 2023-10-26T17:36:29,744 Fetched page https://pypi.org/simple/abutils/ as application/vnd.pypi.simple.v1+json 2023-10-26T17:36:29,752 Found link https://files.pythonhosted.org/packages/50/68/e90af4390a5bf4ae7f4d4c320618c21938407e2cbccb1d8eb9e2128129f7/abutils-0.0.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.1 2023-10-26T17:36:29,753 Found link https://files.pythonhosted.org/packages/2a/34/20450169e044c8a5b3f0789cb6792ac3f0d94ee7314aecda4332460d3996/abutils-0.0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.2 2023-10-26T17:36:29,754 Found link https://files.pythonhosted.org/packages/e7/0b/92eacaadffa6dbe5536af17cd2288991862e5ca8a5193bc3f5f0c511939b/abutils-0.0.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.3 2023-10-26T17:36:29,754 Found link https://files.pythonhosted.org/packages/66/9c/c88a230d9a7df70ed076345a5697bffbac79affa98de6bc7335cbe399508/abutils-0.0.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.4 2023-10-26T17:36:29,755 Found link https://files.pythonhosted.org/packages/36/3e/e6b030787fca71eedbaaa8be3b8b0169a655c7403622bc0c418918121b72/abutils-0.0.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.5 2023-10-26T17:36:29,756 Found link https://files.pythonhosted.org/packages/c2/4b/a1c076b09bf2ab1f5545d0f9fe05c7861166c49ea9846f2d72f6306e792c/abutils-0.0.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.6 2023-10-26T17:36:29,756 Found link https://files.pythonhosted.org/packages/ba/48/ccd3a0f5de7c0b2857f163b24120b027f9b2d88b5b8898646a6126d2ce6b/abutils-0.0.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.7 2023-10-26T17:36:29,757 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/8e/ba/0b774748bc954d98e3246982d1017d09459ecbc21a76628161aa49d4e3fc/abutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-10-26T17:36:29,758 Found link 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(requires-python:>=3.8), version: 0.4.4 2023-10-26T17:36:29,782 Fetching project page and analyzing links: https://www.piwheels.org/simple/abutils/ 2023-10-26T17:36:29,782 Getting page https://www.piwheels.org/simple/abutils/ 2023-10-26T17:36:29,784 Found index url https://www.piwheels.org/simple/ 2023-10-26T17:36:29,942 Fetched page https://www.piwheels.org/simple/abutils/ as text/html 2023-10-26T17:36:29,949 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.3-py3-none-any.whl#sha256=5057eda1cd8d00800ffc6c3f7d9134301b04e1a27f67f2d2126809d2463da701 (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2023-10-26T17:36:29,950 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.4.2-py3-none-any.whl#sha256=e3a66b81fd28bee5d6aad0c69329e384cb67263a57a72a62a56b7aa63f4d295e (from https://www.piwheels.org/simple/abutils/) (requires-python:>=3.8) 2023-10-26T17:36:29,951 Skipping 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https://www.piwheels.org/simple/abutils/abutils-0.1.0-py3-none-any.whl#sha256=4546e6994f84194f448c4af73e9ac961b6cee59d5825bce6b688a7eb31f173f8 (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,959 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.7-py3-none-any.whl#sha256=54b0191660cee12eae66a1c9a280779122ee367b18dc31f5386ed7d9695ba86d (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,960 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.6-py3-none-any.whl#sha256=fa097decefc770e42b78c47c6b74e544cb886b2913fdd2a9764d1649c1083edc (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,960 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.5-py3-none-any.whl#sha256=82da39e304387e62441d40c8da3e8b8e4f88b62838f0cfa01c9ac53272fd9322 (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,961 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.4-py3-none-any.whl#sha256=a857179e2e3aacd72f0100ab26ddd429e314d0484d9dea700b6e3df6e7b08bfc (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,961 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.3-py3-none-any.whl#sha256=3f9161ddaf87fcf6397f20c643a10e6c64dcc028dd9d608e3ba95e9eb4b42301 (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,962 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.2-py3-none-any.whl#sha256=fb1485c1bdfebb4961c6b63db9ae9c45af6af544bf5a1d88830bff9601c333f7 (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,962 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.1-py3-none-any.whl#sha256=80befe258b5d18e6293ffa5f53b4c6fca19cd9c57418df3ad521a374f3827c35 (from https://www.piwheels.org/simple/abutils/) 2023-10-26T17:36:29,963 Skipping link: not a file: https://www.piwheels.org/simple/abutils/ 2023-10-26T17:36:29,963 Skipping link: not a file: https://pypi.org/simple/abutils/ 2023-10-26T17:36:29,986 Given no hashes to check 1 links for project 'abutils': discarding no candidates 2023-10-26T17:36:30,006 Collecting abutils==0.4.4 2023-10-26T17:36:30,008 Created temporary directory: /tmp/pip-unpack-42_612_n 2023-10-26T17:36:30,351 Downloading abutils-0.4.4.tar.gz (93.8 MB) 2023-10-26T17:36:54,481 Added abutils==0.4.4 from https://files.pythonhosted.org/packages/38/35/b3ec5ecbd44bfb5d81d6d76f4eae2a5c6f8d19b31e4a2e98526ccfe98a83/abutils-0.4.4.tar.gz to build tracker '/tmp/pip-build-tracker-wk2oxte9' 2023-10-26T17:36:54,483 Running setup.py (path:/tmp/pip-wheel-e6113gf8/abutils_d4be9fb7f3474c3781b8be1e246eed60/setup.py) egg_info for package abutils 2023-10-26T17:36:54,484 Created temporary directory: /tmp/pip-pip-egg-info-1_jp8_nl 2023-10-26T17:36:54,485 Preparing metadata (setup.py): started 2023-10-26T17:36:54,486 Running command python setup.py egg_info 2023-10-26T17:36:54,953 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-26T17:36:54,953 !! 2023-10-26T17:36:54,955 ******************************************************************************** 2023-10-26T17:36:54,955 Usage of dash-separated 'description-file' will not be supported in future 2023-10-26T17:36:54,956 versions. Please use the underscore name 'description_file' instead. 2023-10-26T17:36:54,957 This deprecation is overdue, please update your project and remove deprecated 2023-10-26T17:36:54,957 calls to avoid build errors in the future. 2023-10-26T17:36:54,959 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-26T17:36:54,959 ******************************************************************************** 2023-10-26T17:36:54,961 !! 2023-10-26T17:36:54,961 opt = self.warn_dash_deprecation(opt, section) 2023-10-26T17:36:55,496 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-26T17:36:55,496 !! 2023-10-26T17:36:55,497 ******************************************************************************** 2023-10-26T17:36:55,498 Usage of dash-separated 'description-file' will not be supported in future 2023-10-26T17:36:55,498 versions. Please use the underscore name 'description_file' instead. 2023-10-26T17:36:55,499 This deprecation is overdue, please update your project and remove deprecated 2023-10-26T17:36:55,500 calls to avoid build errors in the future. 2023-10-26T17:36:55,501 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-26T17:36:55,501 ******************************************************************************** 2023-10-26T17:36:55,502 !! 2023-10-26T17:36:55,503 opt = self.warn_dash_deprecation(opt, section) 2023-10-26T17:36:55,535 running egg_info 2023-10-26T17:36:55,537 creating /tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info 2023-10-26T17:36:55,561 writing /tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/PKG-INFO 2023-10-26T17:36:55,565 writing dependency_links to /tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/dependency_links.txt 2023-10-26T17:36:55,567 writing requirements to /tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/requires.txt 2023-10-26T17:36:55,568 writing top-level names to /tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/top_level.txt 2023-10-26T17:36:55,569 writing manifest file '/tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/SOURCES.txt' 2023-10-26T17:36:55,651 reading manifest file '/tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/SOURCES.txt' 2023-10-26T17:36:55,653 reading manifest template 'MANIFEST.in' 2023-10-26T17:36:55,657 warning: no files found matching 'abutils/tenx/*' 2023-10-26T17:36:55,662 warning: no files found matching 'abutils/bin/mafft_darwin_amd64/mafftdir/*' 2023-10-26T17:36:55,666 warning: no files found matching 'abutils/bin/mafft_darwin_arm64/mafftdir/*' 2023-10-26T17:36:55,669 warning: no files found matching 'abutils/bin/mafft_linux_amd64/mafftdir/*' 2023-10-26T17:36:55,673 adding license file 'LICENSE' 2023-10-26T17:36:55,681 writing manifest file '/tmp/pip-pip-egg-info-1_jp8_nl/abutils.egg-info/SOURCES.txt' 2023-10-26T17:36:55,789 Preparing metadata (setup.py): finished with status 'done' 2023-10-26T17:36:55,793 Source in /tmp/pip-wheel-e6113gf8/abutils_d4be9fb7f3474c3781b8be1e246eed60 has version 0.4.4, which satisfies requirement abutils==0.4.4 from https://files.pythonhosted.org/packages/38/35/b3ec5ecbd44bfb5d81d6d76f4eae2a5c6f8d19b31e4a2e98526ccfe98a83/abutils-0.4.4.tar.gz 2023-10-26T17:36:55,794 Removed abutils==0.4.4 from https://files.pythonhosted.org/packages/38/35/b3ec5ecbd44bfb5d81d6d76f4eae2a5c6f8d19b31e4a2e98526ccfe98a83/abutils-0.4.4.tar.gz from build tracker '/tmp/pip-build-tracker-wk2oxte9' 2023-10-26T17:36:55,801 Created temporary directory: /tmp/pip-unpack-at4xy2j9 2023-10-26T17:36:55,802 Created temporary directory: /tmp/pip-unpack-thlsw3ju 2023-10-26T17:36:55,827 Building wheels for collected packages: abutils 2023-10-26T17:36:55,832 Created temporary directory: /tmp/pip-wheel-fs1pg3g_ 2023-10-26T17:36:55,833 Building wheel for abutils (setup.py): started 2023-10-26T17:36:55,834 Destination directory: /tmp/pip-wheel-fs1pg3g_ 2023-10-26T17:36:55,834 Running command python setup.py bdist_wheel 2023-10-26T17:36:56,312 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-26T17:36:56,312 !! 2023-10-26T17:36:56,313 ******************************************************************************** 2023-10-26T17:36:56,314 Usage of dash-separated 'description-file' will not be supported in future 2023-10-26T17:36:56,315 versions. Please use the underscore name 'description_file' instead. 2023-10-26T17:36:56,316 This deprecation is overdue, please update your project and remove deprecated 2023-10-26T17:36:56,316 calls to avoid build errors in the future. 2023-10-26T17:36:56,317 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-26T17:36:56,318 ******************************************************************************** 2023-10-26T17:36:56,318 !! 2023-10-26T17:36:56,319 opt = self.warn_dash_deprecation(opt, section) 2023-10-26T17:36:56,849 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-10-26T17:36:56,850 !! 2023-10-26T17:36:56,851 ******************************************************************************** 2023-10-26T17:36:56,851 Usage of dash-separated 'description-file' will not be supported in future 2023-10-26T17:36:56,852 versions. Please use the underscore name 'description_file' instead. 2023-10-26T17:36:56,853 This deprecation is overdue, please update your project and remove deprecated 2023-10-26T17:36:56,853 calls to avoid build errors in the future. 2023-10-26T17:36:56,854 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-10-26T17:36:56,855 ******************************************************************************** 2023-10-26T17:36:56,856 !! 2023-10-26T17:36:56,857 opt = self.warn_dash_deprecation(opt, section) 2023-10-26T17:36:56,883 running bdist_wheel 2023-10-26T17:36:56,978 running build 2023-10-26T17:36:56,979 running build_py 2023-10-26T17:36:57,006 creating build 2023-10-26T17:36:57,006 creating build/lib 2023-10-26T17:36:57,007 creating build/lib/abutils 2023-10-26T17:36:57,008 copying abutils/pl.py -> build/lib/abutils 2023-10-26T17:36:57,010 copying abutils/__init__.py -> build/lib/abutils 2023-10-26T17:36:57,012 copying abutils/cl.py -> build/lib/abutils 2023-10-26T17:36:57,014 copying abutils/version.py -> build/lib/abutils 2023-10-26T17:36:57,015 copying abutils/tl.py -> build/lib/abutils 2023-10-26T17:36:57,017 copying abutils/io.py -> build/lib/abutils 2023-10-26T17:36:57,020 creating build/lib/abutils/utils 2023-10-26T17:36:57,021 copying abutils/utils/decorators.py -> build/lib/abutils/utils 2023-10-26T17:36:57,023 copying abutils/utils/phylogeny.py -> build/lib/abutils/utils 2023-10-26T17:36:57,025 copying abutils/utils/progbar.py -> build/lib/abutils/utils 2023-10-26T17:36:57,027 copying abutils/utils/log.py -> build/lib/abutils/utils 2023-10-26T17:36:57,029 copying abutils/utils/color.py -> build/lib/abutils/utils 2023-10-26T17:36:57,032 copying abutils/utils/alignment.py -> build/lib/abutils/utils 2023-10-26T17:36:57,036 copying abutils/utils/cluster.py -> build/lib/abutils/utils 2023-10-26T17:36:57,040 copying abutils/utils/__init__.py -> build/lib/abutils/utils 2023-10-26T17:36:57,042 copying abutils/utils/database.py -> build/lib/abutils/utils 2023-10-26T17:36:57,044 copying abutils/utils/utilities.py -> build/lib/abutils/utils 2023-10-26T17:36:57,046 copying abutils/utils/convert.py -> build/lib/abutils/utils 2023-10-26T17:36:57,048 copying abutils/utils/pipeline.py -> build/lib/abutils/utils 2023-10-26T17:36:57,050 copying abutils/utils/seqio.py -> build/lib/abutils/utils 2023-10-26T17:36:57,052 copying abutils/utils/codons.py -> build/lib/abutils/utils 2023-10-26T17:36:57,054 copying abutils/utils/germlines.py -> build/lib/abutils/utils 2023-10-26T17:36:57,057 copying abutils/utils/circos.py -> build/lib/abutils/utils 2023-10-26T17:36:57,058 copying abutils/utils/mongodb.py -> build/lib/abutils/utils 2023-10-26T17:36:57,061 copying abutils/utils/jobs.py -> build/lib/abutils/utils 2023-10-26T17:36:57,063 copying abutils/utils/s3.py -> build/lib/abutils/utils 2023-10-26T17:36:57,065 copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils 2023-10-26T17:36:57,068 creating build/lib/abutils/core 2023-10-26T17:36:57,069 copying abutils/core/__init__.py -> build/lib/abutils/core 2023-10-26T17:36:57,071 copying abutils/core/pair.py -> build/lib/abutils/core 2023-10-26T17:36:57,073 copying abutils/core/lineage.py -> build/lib/abutils/core 2023-10-26T17:36:57,076 copying abutils/core/sequence.py -> build/lib/abutils/core 2023-10-26T17:36:57,080 creating build/lib/abutils/tests 2023-10-26T17:36:57,080 copying abutils/tests/test_sequence.py -> build/lib/abutils/tests 2023-10-26T17:36:57,082 copying abutils/tests/test_cluster.py -> build/lib/abutils/tests 2023-10-26T17:36:57,085 copying abutils/tests/test_alignment.py -> build/lib/abutils/tests 2023-10-26T17:36:57,087 copying abutils/tests/__init__.py -> build/lib/abutils/tests 2023-10-26T17:36:57,089 copying abutils/tests/test_utilities.py -> build/lib/abutils/tests 2023-10-26T17:36:57,090 copying abutils/tests/test_phylo.py -> build/lib/abutils/tests 2023-10-26T17:36:57,093 copying abutils/tests/test_color.py -> build/lib/abutils/tests 2023-10-26T17:36:57,095 copying abutils/tests/test_clonify.py -> build/lib/abutils/tests 2023-10-26T17:36:57,097 copying abutils/tests/test_pair.py -> build/lib/abutils/tests 2023-10-26T17:36:57,100 creating build/lib/abutils/plots 2023-10-26T17:36:57,101 copying abutils/plots/bar.py -> build/lib/abutils/plots 2023-10-26T17:36:57,103 copying abutils/plots/ring.py -> build/lib/abutils/plots 2023-10-26T17:36:57,105 copying abutils/plots/__init__.py -> build/lib/abutils/plots 2023-10-26T17:36:57,107 copying abutils/plots/scatter.py -> build/lib/abutils/plots 2023-10-26T17:36:57,109 copying abutils/plots/summary.py -> build/lib/abutils/plots 2023-10-26T17:36:57,111 copying abutils/plots/lineage.py -> build/lib/abutils/plots 2023-10-26T17:36:57,114 copying abutils/plots/ridge.py -> build/lib/abutils/plots 2023-10-26T17:36:57,116 copying abutils/plots/utils.py -> build/lib/abutils/plots 2023-10-26T17:36:57,118 copying abutils/plots/donut.py -> build/lib/abutils/plots 2023-10-26T17:36:57,120 copying abutils/plots/data.py -> build/lib/abutils/plots 2023-10-26T17:36:57,123 copying abutils/plots/base.py -> build/lib/abutils/plots 2023-10-26T17:36:57,124 copying abutils/plots/kde.py -> build/lib/abutils/plots 2023-10-26T17:36:57,128 copying abutils/plots/heatmap.py -> build/lib/abutils/plots 2023-10-26T17:36:57,131 creating build/lib/abutils/tools 2023-10-26T17:36:57,132 copying abutils/tools/alignment.py -> build/lib/abutils/tools 2023-10-26T17:36:57,136 copying abutils/tools/cluster.py -> build/lib/abutils/tools 2023-10-26T17:36:57,139 copying abutils/tools/__init__.py -> build/lib/abutils/tools 2023-10-26T17:36:57,141 copying abutils/tools/similarity.py -> build/lib/abutils/tools 2023-10-26T17:36:57,144 copying abutils/tools/phylo.py -> build/lib/abutils/tools 2023-10-26T17:36:57,147 copying abutils/tools/clonify.py -> build/lib/abutils/tools 2023-10-26T17:36:57,149 creating build/lib/abutils/plots/mixins 2023-10-26T17:36:57,150 copying abutils/plots/mixins/hue.py -> build/lib/abutils/plots/mixins 2023-10-26T17:36:57,152 copying abutils/plots/mixins/__init__.py -> build/lib/abutils/plots/mixins 2023-10-26T17:36:57,154 creating build/lib/abutils/plots/models 2023-10-26T17:36:57,155 copying abutils/plots/models/__init__.py -> build/lib/abutils/plots/models 2023-10-26T17:36:57,157 copying abutils/plots/models/data.py -> build/lib/abutils/plots/models 2023-10-26T17:36:57,160 running egg_info 2023-10-26T17:36:57,215 writing abutils.egg-info/PKG-INFO 2023-10-26T17:36:57,218 writing dependency_links to abutils.egg-info/dependency_links.txt 2023-10-26T17:36:57,220 writing requirements to abutils.egg-info/requires.txt 2023-10-26T17:36:57,222 writing top-level names to abutils.egg-info/top_level.txt 2023-10-26T17:36:57,252 reading manifest file 'abutils.egg-info/SOURCES.txt' 2023-10-26T17:36:57,259 reading manifest template 'MANIFEST.in' 2023-10-26T17:36:57,263 warning: no files found matching 'abutils/tenx/*' 2023-10-26T17:36:57,266 warning: no files found matching 'abutils/bin/mafft_darwin_amd64/mafftdir/*' 2023-10-26T17:36:57,269 warning: no files found matching 'abutils/bin/mafft_darwin_arm64/mafftdir/*' 2023-10-26T17:36:57,272 warning: no files found matching 'abutils/bin/mafft_linux_amd64/mafftdir/*' 2023-10-26T17:36:57,274 adding license file 'LICENSE' 2023-10-26T17:36:57,285 writing manifest file 'abutils.egg-info/SOURCES.txt' 2023-10-26T17:36:57,288 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin' is absent from the `packages` configuration. 2023-10-26T17:36:57,288 !! 2023-10-26T17:36:57,289 ******************************************************************************** 2023-10-26T17:36:57,290 ############################ 2023-10-26T17:36:57,290 # Package would be ignored # 2023-10-26T17:36:57,291 ############################ 2023-10-26T17:36:57,291 Python recognizes 'abutils.bin' as an importable package[^1], 2023-10-26T17:36:57,291 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,292 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,293 package, please make sure that 'abutils.bin' is explicitly added 2023-10-26T17:36:57,293 to the `packages` configuration field. 2023-10-26T17:36:57,294 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,295 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,296 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,298 If you don't want 'abutils.bin' to be distributed and are 2023-10-26T17:36:57,298 already explicitly excluding 'abutils.bin' via 2023-10-26T17:36:57,299 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,300 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,300 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,302 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,303 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,305 even if it does not contain any `.py` files. 2023-10-26T17:36:57,306 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,306 directory, all directories are treated like packages. 2023-10-26T17:36:57,307 ******************************************************************************** 2023-10-26T17:36:57,308 !! 2023-10-26T17:36:57,308 check.warn(importable) 2023-10-26T17:36:57,309 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_amd64' is absent from the `packages` configuration. 2023-10-26T17:36:57,309 !! 2023-10-26T17:36:57,310 ******************************************************************************** 2023-10-26T17:36:57,311 ############################ 2023-10-26T17:36:57,311 # Package would be ignored # 2023-10-26T17:36:57,312 ############################ 2023-10-26T17:36:57,313 Python recognizes 'abutils.bin.mafft_darwin_amd64' as an importable package[^1], 2023-10-26T17:36:57,313 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,314 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,315 package, please make sure that 'abutils.bin.mafft_darwin_amd64' is explicitly added 2023-10-26T17:36:57,316 to the `packages` configuration field. 2023-10-26T17:36:57,317 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,317 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,318 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,319 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,320 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,321 If you don't want 'abutils.bin.mafft_darwin_amd64' to be distributed and are 2023-10-26T17:36:57,321 already explicitly excluding 'abutils.bin.mafft_darwin_amd64' via 2023-10-26T17:36:57,322 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,323 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,324 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,327 even if it does not contain any `.py` files. 2023-10-26T17:36:57,327 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,328 directory, all directories are treated like packages. 2023-10-26T17:36:57,329 ******************************************************************************** 2023-10-26T17:36:57,330 !! 2023-10-26T17:36:57,330 check.warn(importable) 2023-10-26T17:36:57,331 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' is absent from the `packages` configuration. 2023-10-26T17:36:57,331 !! 2023-10-26T17:36:57,332 ******************************************************************************** 2023-10-26T17:36:57,333 ############################ 2023-10-26T17:36:57,333 # Package would be ignored # 2023-10-26T17:36:57,334 ############################ 2023-10-26T17:36:57,334 Python recognizes 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' as an importable package[^1], 2023-10-26T17:36:57,335 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,336 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,336 package, please make sure that 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' is explicitly added 2023-10-26T17:36:57,337 to the `packages` configuration field. 2023-10-26T17:36:57,338 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,339 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,340 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,341 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,342 If you don't want 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' to be distributed and are 2023-10-26T17:36:57,343 already explicitly excluding 'abutils.bin.mafft_darwin_amd64.mafftdir.bin' via 2023-10-26T17:36:57,343 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,344 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,345 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,348 even if it does not contain any `.py` files. 2023-10-26T17:36:57,348 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,349 directory, all directories are treated like packages. 2023-10-26T17:36:57,349 ******************************************************************************** 2023-10-26T17:36:57,350 !! 2023-10-26T17:36:57,351 check.warn(importable) 2023-10-26T17:36:57,351 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' is absent from the `packages` configuration. 2023-10-26T17:36:57,352 !! 2023-10-26T17:36:57,353 ******************************************************************************** 2023-10-26T17:36:57,353 ############################ 2023-10-26T17:36:57,354 # Package would be ignored # 2023-10-26T17:36:57,354 ############################ 2023-10-26T17:36:57,355 Python recognizes 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' as an importable package[^1], 2023-10-26T17:36:57,356 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,357 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,357 package, please make sure that 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' is explicitly added 2023-10-26T17:36:57,358 to the `packages` configuration field. 2023-10-26T17:36:57,359 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,360 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,361 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,362 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,363 If you don't want 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' to be distributed and are 2023-10-26T17:36:57,364 already explicitly excluding 'abutils.bin.mafft_darwin_amd64.mafftdir.libexec' via 2023-10-26T17:36:57,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,365 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,366 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,367 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,369 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,371 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,371 even if it does not contain any `.py` files. 2023-10-26T17:36:57,372 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,372 directory, all directories are treated like packages. 2023-10-26T17:36:57,373 ******************************************************************************** 2023-10-26T17:36:57,374 !! 2023-10-26T17:36:57,377 check.warn(importable) 2023-10-26T17:36:57,378 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_arm64' is absent from the `packages` configuration. 2023-10-26T17:36:57,379 !! 2023-10-26T17:36:57,380 ******************************************************************************** 2023-10-26T17:36:57,380 ############################ 2023-10-26T17:36:57,381 # Package would be ignored # 2023-10-26T17:36:57,382 ############################ 2023-10-26T17:36:57,383 Python recognizes 'abutils.bin.mafft_darwin_arm64' as an importable package[^1], 2023-10-26T17:36:57,384 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,386 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,387 package, please make sure that 'abutils.bin.mafft_darwin_arm64' is explicitly added 2023-10-26T17:36:57,387 to the `packages` configuration field. 2023-10-26T17:36:57,388 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,389 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,390 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,398 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,399 If you don't want 'abutils.bin.mafft_darwin_arm64' to be distributed and are 2023-10-26T17:36:57,400 already explicitly excluding 'abutils.bin.mafft_darwin_arm64' via 2023-10-26T17:36:57,400 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,400 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,401 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,402 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,403 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,405 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,405 even if it does not contain any `.py` files. 2023-10-26T17:36:57,405 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,406 directory, all directories are treated like packages. 2023-10-26T17:36:57,407 ******************************************************************************** 2023-10-26T17:36:57,408 !! 2023-10-26T17:36:57,408 check.warn(importable) 2023-10-26T17:36:57,409 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' is absent from the `packages` configuration. 2023-10-26T17:36:57,410 !! 2023-10-26T17:36:57,411 ******************************************************************************** 2023-10-26T17:36:57,412 ############################ 2023-10-26T17:36:57,412 # Package would be ignored # 2023-10-26T17:36:57,413 ############################ 2023-10-26T17:36:57,413 Python recognizes 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' as an importable package[^1], 2023-10-26T17:36:57,414 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,415 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,415 package, please make sure that 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' is explicitly added 2023-10-26T17:36:57,416 to the `packages` configuration field. 2023-10-26T17:36:57,417 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,418 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,420 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,491 If you don't want 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' to be distributed and are 2023-10-26T17:36:57,492 already explicitly excluding 'abutils.bin.mafft_darwin_arm64.mafftdir.bin' via 2023-10-26T17:36:57,492 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,493 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,493 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,494 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,494 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,497 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,498 even if it does not contain any `.py` files. 2023-10-26T17:36:57,498 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,499 directory, all directories are treated like packages. 2023-10-26T17:36:57,499 ******************************************************************************** 2023-10-26T17:36:57,500 !! 2023-10-26T17:36:57,501 check.warn(importable) 2023-10-26T17:36:57,501 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' is absent from the `packages` configuration. 2023-10-26T17:36:57,502 !! 2023-10-26T17:36:57,503 ******************************************************************************** 2023-10-26T17:36:57,503 ############################ 2023-10-26T17:36:57,504 # Package would be ignored # 2023-10-26T17:36:57,504 ############################ 2023-10-26T17:36:57,505 Python recognizes 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' as an importable package[^1], 2023-10-26T17:36:57,506 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,507 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,507 package, please make sure that 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' is explicitly added 2023-10-26T17:36:57,508 to the `packages` configuration field. 2023-10-26T17:36:57,509 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,510 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,511 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,512 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,513 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,514 If you don't want 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' to be distributed and are 2023-10-26T17:36:57,515 already explicitly excluding 'abutils.bin.mafft_darwin_arm64.mafftdir.libexec' via 2023-10-26T17:36:57,515 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,516 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,516 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,518 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,519 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,521 even if it does not contain any `.py` files. 2023-10-26T17:36:57,522 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,523 directory, all directories are treated like packages. 2023-10-26T17:36:57,523 ******************************************************************************** 2023-10-26T17:36:57,524 !! 2023-10-26T17:36:57,525 check.warn(importable) 2023-10-26T17:36:57,525 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_linux_amd64' is absent from the `packages` configuration. 2023-10-26T17:36:57,526 !! 2023-10-26T17:36:57,526 ******************************************************************************** 2023-10-26T17:36:57,527 ############################ 2023-10-26T17:36:57,527 # Package would be ignored # 2023-10-26T17:36:57,528 ############################ 2023-10-26T17:36:57,528 Python recognizes 'abutils.bin.mafft_linux_amd64' as an importable package[^1], 2023-10-26T17:36:57,529 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,530 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,530 package, please make sure that 'abutils.bin.mafft_linux_amd64' is explicitly added 2023-10-26T17:36:57,531 to the `packages` configuration field. 2023-10-26T17:36:57,532 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,533 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,534 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,535 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,536 If you don't want 'abutils.bin.mafft_linux_amd64' to be distributed and are 2023-10-26T17:36:57,537 already explicitly excluding 'abutils.bin.mafft_linux_amd64' via 2023-10-26T17:36:57,538 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,538 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,539 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,540 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,544 even if it does not contain any `.py` files. 2023-10-26T17:36:57,545 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,546 directory, all directories are treated like packages. 2023-10-26T17:36:57,546 ******************************************************************************** 2023-10-26T17:36:57,547 !! 2023-10-26T17:36:57,548 check.warn(importable) 2023-10-26T17:36:57,548 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_linux_amd64.mafftdir.bin' is absent from the `packages` configuration. 2023-10-26T17:36:57,549 !! 2023-10-26T17:36:57,550 ******************************************************************************** 2023-10-26T17:36:57,551 ############################ 2023-10-26T17:36:57,551 # Package would be ignored # 2023-10-26T17:36:57,552 ############################ 2023-10-26T17:36:57,553 Python recognizes 'abutils.bin.mafft_linux_amd64.mafftdir.bin' as an importable package[^1], 2023-10-26T17:36:57,553 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,554 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,555 package, please make sure that 'abutils.bin.mafft_linux_amd64.mafftdir.bin' is explicitly added 2023-10-26T17:36:57,556 to the `packages` configuration field. 2023-10-26T17:36:57,557 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,557 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,558 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,559 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,559 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,560 If you don't want 'abutils.bin.mafft_linux_amd64.mafftdir.bin' to be distributed and are 2023-10-26T17:36:57,561 already explicitly excluding 'abutils.bin.mafft_linux_amd64.mafftdir.bin' via 2023-10-26T17:36:57,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,562 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,562 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,563 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,566 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,566 even if it does not contain any `.py` files. 2023-10-26T17:36:57,566 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,567 directory, all directories are treated like packages. 2023-10-26T17:36:57,568 ******************************************************************************** 2023-10-26T17:36:57,569 !! 2023-10-26T17:36:57,569 check.warn(importable) 2023-10-26T17:36:57,570 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' is absent from the `packages` configuration. 2023-10-26T17:36:57,571 !! 2023-10-26T17:36:57,572 ******************************************************************************** 2023-10-26T17:36:57,572 ############################ 2023-10-26T17:36:57,573 # Package would be ignored # 2023-10-26T17:36:57,573 ############################ 2023-10-26T17:36:57,574 Python recognizes 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' as an importable package[^1], 2023-10-26T17:36:57,575 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,576 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,577 package, please make sure that 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' is explicitly added 2023-10-26T17:36:57,577 to the `packages` configuration field. 2023-10-26T17:36:57,578 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,579 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,579 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,581 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,583 If you don't want 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' to be distributed and are 2023-10-26T17:36:57,584 already explicitly excluding 'abutils.bin.mafft_linux_amd64.mafftdir.libexec' via 2023-10-26T17:36:57,584 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,585 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,586 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,587 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,590 even if it does not contain any `.py` files. 2023-10-26T17:36:57,590 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,591 directory, all directories are treated like packages. 2023-10-26T17:36:57,591 ******************************************************************************** 2023-10-26T17:36:57,592 !! 2023-10-26T17:36:57,592 check.warn(importable) 2023-10-26T17:36:57,593 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration. 2023-10-26T17:36:57,593 !! 2023-10-26T17:36:57,594 ******************************************************************************** 2023-10-26T17:36:57,595 ############################ 2023-10-26T17:36:57,595 # Package would be ignored # 2023-10-26T17:36:57,596 ############################ 2023-10-26T17:36:57,596 Python recognizes 'abutils.utils.matrices' as an importable package[^1], 2023-10-26T17:36:57,597 but it is absent from setuptools' `packages` configuration. 2023-10-26T17:36:57,598 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T17:36:57,598 package, please make sure that 'abutils.utils.matrices' is explicitly added 2023-10-26T17:36:57,599 to the `packages` configuration field. 2023-10-26T17:36:57,600 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T17:36:57,601 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T17:36:57,602 instead of `find_packages(...)`/`find:`). 2023-10-26T17:36:57,603 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T17:36:57,604 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T17:36:57,605 If you don't want 'abutils.utils.matrices' to be distributed and are 2023-10-26T17:36:57,606 already explicitly excluding 'abutils.utils.matrices' via 2023-10-26T17:36:57,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T17:36:57,607 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T17:36:57,608 combination with a more fine grained `package-data` configuration. 2023-10-26T17:36:57,609 You can read more about "package data files" on setuptools documentation page: 2023-10-26T17:36:57,610 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T17:36:57,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T17:36:57,612 even if it does not contain any `.py` files. 2023-10-26T17:36:57,613 On the other hand, currently there is no concept of package data 2023-10-26T17:36:57,614 directory, all directories are treated like packages. 2023-10-26T17:36:57,614 ******************************************************************************** 2023-10-26T17:36:57,615 !! 2023-10-26T17:36:57,616 check.warn(importable) 2023-10-26T17:36:57,617 creating build/lib/abutils/bin 2023-10-26T17:36:57,618 copying abutils/bin/cdhit_darwin_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:57,618 copying abutils/bin/cdhit_darwin_arm64 -> build/lib/abutils/bin 2023-10-26T17:36:57,619 copying abutils/bin/cdhit_linux_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:57,620 copying abutils/bin/fasttree_darwin_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:57,620 copying abutils/bin/fasttree_darwin_arm64 -> build/lib/abutils/bin 2023-10-26T17:36:57,621 copying abutils/bin/fasttree_linux_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:57,621 copying abutils/bin/mafft_darwin -> build/lib/abutils/bin 2023-10-26T17:36:57,622 copying abutils/bin/mafft_linux -> build/lib/abutils/bin 2023-10-26T17:36:57,622 copying abutils/bin/mmseqs_darwin_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:57,623 copying abutils/bin/mmseqs_darwin_arm64 -> build/lib/abutils/bin 2023-10-26T17:36:58,074 copying abutils/bin/mmseqs_linux_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:58,752 copying abutils/bin/muscle3_darwin -> build/lib/abutils/bin 2023-10-26T17:36:58,761 copying abutils/bin/muscle3_linux -> build/lib/abutils/bin 2023-10-26T17:36:58,769 copying abutils/bin/muscle_darwin_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:58,787 copying abutils/bin/muscle_darwin_arm64 -> build/lib/abutils/bin 2023-10-26T17:36:58,804 copying abutils/bin/muscle_linux_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:58,849 copying abutils/bin/vsearch_darwin_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:58,859 copying abutils/bin/vsearch_darwin_arm64 -> build/lib/abutils/bin 2023-10-26T17:36:58,868 copying abutils/bin/vsearch_linux_amd64 -> build/lib/abutils/bin 2023-10-26T17:36:58,905 creating build/lib/abutils/bin/mafft_darwin_amd64 2023-10-26T17:36:58,907 copying abutils/bin/mafft_darwin_amd64/in -> build/lib/abutils/bin/mafft_darwin_amd64 2023-10-26T17:36:58,909 copying abutils/bin/mafft_darwin_amd64/mafft.bat -> build/lib/abutils/bin/mafft_darwin_amd64 2023-10-26T17:36:58,912 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir 2023-10-26T17:36:58,912 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-10-26T17:36:58,914 copying abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-10-26T17:36:58,918 creating build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:58,919 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:58,946 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:58,961 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:58,969 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,165 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,193 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,209 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,226 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,243 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,271 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,281 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,294 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,318 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,323 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,344 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,347 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,373 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,376 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,379 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,385 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,418 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,434 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,453 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,480 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,507 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,534 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,547 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,562 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,575 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,593 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,595 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,604 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,637 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,650 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,666 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,694 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,762 copying abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:36:59,767 creating build/lib/abutils/bin/mafft_darwin_arm64 2023-10-26T17:36:59,768 copying abutils/bin/mafft_darwin_arm64/in -> build/lib/abutils/bin/mafft_darwin_arm64 2023-10-26T17:36:59,770 copying abutils/bin/mafft_darwin_arm64/mafft.bat -> build/lib/abutils/bin/mafft_darwin_arm64 2023-10-26T17:36:59,772 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir 2023-10-26T17:36:59,772 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-10-26T17:36:59,773 copying abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-10-26T17:36:59,778 creating build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:36:59,778 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:36:59,811 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:36:59,826 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:36:59,835 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,038 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,070 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,086 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,101 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,119 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,147 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,156 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,170 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,194 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,198 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,219 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,221 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,246 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,249 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,252 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,257 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,283 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,298 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,314 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,344 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,369 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,394 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,408 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,423 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,436 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,452 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,454 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,463 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,491 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,505 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,521 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,549 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,579 copying abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:00,584 creating build/lib/abutils/bin/mafft_linux_amd64 2023-10-26T17:37:00,584 copying abutils/bin/mafft_linux_amd64/mafft.bat -> build/lib/abutils/bin/mafft_linux_amd64 2023-10-26T17:37:00,586 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir 2023-10-26T17:37:00,587 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-10-26T17:37:00,588 copying abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-10-26T17:37:00,592 creating build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,593 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,615 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,631 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,642 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,646 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,713 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,716 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,744 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,760 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,776 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,792 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,812 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,826 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,840 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,860 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,862 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,872 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,892 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,894 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,916 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,919 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,922 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,932 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,954 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,970 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:00,987 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,009 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,031 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,055 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,073 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,088 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,103 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/score -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,120 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,122 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,133 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,155 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,170 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5 -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,186 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,209 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,231 copying abutils/bin/mafft_linux_amd64/mafftdir/libexec/version -> build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:01,241 creating build/lib/abutils/utils/matrices 2023-10-26T17:37:01,241 copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices 2023-10-26T17:37:01,244 copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices 2023-10-26T17:37:01,246 copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices 2023-10-26T17:37:01,276 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-26T17:37:01,276 !! 2023-10-26T17:37:01,277 ******************************************************************************** 2023-10-26T17:37:01,278 Please avoid running ``setup.py`` directly. 2023-10-26T17:37:01,278 Instead, use pypa/build, pypa/installer or other 2023-10-26T17:37:01,279 standards-based tools. 2023-10-26T17:37:01,280 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-26T17:37:01,280 ******************************************************************************** 2023-10-26T17:37:01,281 !! 2023-10-26T17:37:01,281 self.initialize_options() 2023-10-26T17:37:01,300 installing to build/bdist.linux-armv7l/wheel 2023-10-26T17:37:01,301 running install 2023-10-26T17:37:01,324 running install_lib 2023-10-26T17:37:01,347 creating build/bdist.linux-armv7l 2023-10-26T17:37:01,348 creating build/bdist.linux-armv7l/wheel 2023-10-26T17:37:01,349 creating build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:01,351 creating build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,352 copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,354 copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,357 copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,359 copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,360 copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,363 copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,366 copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,369 copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,371 copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,373 copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,375 copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,377 copying build/lib/abutils/utils/pipeline.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,379 copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,381 copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,382 copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,385 creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-10-26T17:37:01,386 copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-10-26T17:37:01,388 copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-10-26T17:37:01,390 copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-10-26T17:37:01,392 copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,393 copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,395 copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,397 copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,399 copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-10-26T17:37:01,401 copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:01,403 creating build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:01,404 copying build/lib/abutils/bin/muscle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:01,421 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2023-10-26T17:37:01,422 copying build/lib/abutils/bin/mafft_darwin_amd64/in -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2023-10-26T17:37:01,424 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir 2023-10-26T17:37:01,425 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-10-26T17:37:01,426 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/bin 2023-10-26T17:37:01,431 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,431 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,457 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,459 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,474 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,503 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,532 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,546 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,561 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,584 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,589 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,604 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,606 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,635 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,844 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,909 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,931 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,952 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,958 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:01,998 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,019 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,024 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,050 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,059 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,073 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,089 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,118 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,121 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,147 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,165 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,192 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,199 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,217 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,219 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,256 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,280 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,290 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,303 copying build/lib/abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64/mafftdir/libexec 2023-10-26T17:37:02,321 copying build/lib/abutils/bin/mafft_darwin_amd64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_amd64 2023-10-26T17:37:02,323 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64 2023-10-26T17:37:02,325 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir 2023-10-26T17:37:02,326 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-10-26T17:37:02,328 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/bin 2023-10-26T17:37:02,333 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,334 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,357 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,359 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,376 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,396 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,419 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,434 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,450 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,470 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,481 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,496 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,499 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,519 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,593 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,595 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,610 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,629 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,645 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,656 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,677 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,694 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,704 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,725 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,740 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,755 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,759 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,776 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,795 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,797 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,816 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,819 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,834 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,856 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,867 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,883 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,886 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,910 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,930 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,942 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,956 copying build/lib/abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64/mafftdir/libexec 2023-10-26T17:37:02,972 copying build/lib/abutils/bin/mafft_linux_amd64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_linux_amd64 2023-10-26T17:37:02,974 copying build/lib/abutils/bin/vsearch_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:02,982 copying build/lib/abutils/bin/mafft_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:02,985 copying build/lib/abutils/bin/vsearch_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:02,995 copying build/lib/abutils/bin/cdhit_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:02,999 copying build/lib/abutils/bin/fasttree_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:03,007 copying build/lib/abutils/bin/muscle3_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:03,016 copying build/lib/abutils/bin/fasttree_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:03,023 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2023-10-26T17:37:03,024 copying build/lib/abutils/bin/mafft_darwin_arm64/in -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2023-10-26T17:37:03,026 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir 2023-10-26T17:37:03,028 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-10-26T17:37:03,029 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/bin 2023-10-26T17:37:03,033 creating build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,034 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,062 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,065 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,078 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,103 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,130 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,143 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,158 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,181 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,186 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,201 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,204 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,229 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,423 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,436 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,451 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,467 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,471 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,509 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,527 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,531 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,558 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,567 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,580 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,596 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,620 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,623 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,649 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,663 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,688 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,696 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,719 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,722 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,748 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,777 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,785 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,799 copying build/lib/abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64/mafftdir/libexec 2023-10-26T17:37:03,815 copying build/lib/abutils/bin/mafft_darwin_arm64/mafft.bat -> build/bdist.linux-armv7l/wheel/abutils/bin/mafft_darwin_arm64 2023-10-26T17:37:03,817 copying build/lib/abutils/bin/vsearch_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:03,848 copying build/lib/abutils/bin/cdhit_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:03,853 copying build/lib/abutils/bin/mmseqs_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:04,415 copying build/lib/abutils/bin/muscle3_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:04,422 copying build/lib/abutils/bin/cdhit_darwin_arm64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:04,428 copying build/lib/abutils/bin/mmseqs_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:04,530 copying build/lib/abutils/bin/mmseqs_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:05,186 copying build/lib/abutils/bin/muscle_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:05,204 copying build/lib/abutils/bin/mafft_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:05,208 copying build/lib/abutils/bin/muscle_linux_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:05,254 copying build/lib/abutils/bin/fasttree_darwin_amd64 -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-10-26T17:37:05,261 copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:05,263 copying build/lib/abutils/cl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:05,265 creating build/bdist.linux-armv7l/wheel/abutils/core 2023-10-26T17:37:05,266 copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-10-26T17:37:05,269 copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-10-26T17:37:05,272 copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-10-26T17:37:05,275 copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-10-26T17:37:05,279 creating build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,280 copying build/lib/abutils/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,283 copying build/lib/abutils/tests/test_cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,285 copying build/lib/abutils/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,288 copying build/lib/abutils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,290 copying build/lib/abutils/tests/test_utilities.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,292 copying build/lib/abutils/tests/test_phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,295 copying build/lib/abutils/tests/test_color.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,297 copying build/lib/abutils/tests/test_clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,300 copying build/lib/abutils/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/abutils/tests 2023-10-26T17:37:05,303 copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:05,305 copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:05,307 creating build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,309 copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,311 copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,314 copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,316 creating build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2023-10-26T17:37:05,317 copying build/lib/abutils/plots/mixins/hue.py -> build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2023-10-26T17:37:05,319 copying build/lib/abutils/plots/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots/mixins 2023-10-26T17:37:05,321 copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,324 copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,326 copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,329 copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,332 copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,334 copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,337 creating build/bdist.linux-armv7l/wheel/abutils/plots/models 2023-10-26T17:37:05,338 copying build/lib/abutils/plots/models/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots/models 2023-10-26T17:37:05,340 copying build/lib/abutils/plots/models/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots/models 2023-10-26T17:37:05,343 copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,346 copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,348 copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,352 copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-10-26T17:37:05,355 creating build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,356 copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,360 copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,363 copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,365 copying build/lib/abutils/tools/similarity.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,368 copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,371 copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-10-26T17:37:05,374 copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/abutils 2023-10-26T17:37:05,376 running install_egg_info 2023-10-26T17:37:05,406 Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/abutils-0.4.4-py3.11.egg-info 2023-10-26T17:37:05,417 running install_scripts 2023-10-26T17:37:05,435 creating build/bdist.linux-armv7l/wheel/abutils-0.4.4.dist-info/WHEEL 2023-10-26T17:37:05,437 creating '/tmp/pip-wheel-fs1pg3g_/abutils-0.4.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-26T17:37:05,439 adding 'abutils/__init__.py' 2023-10-26T17:37:05,441 adding 'abutils/cl.py' 2023-10-26T17:37:05,443 adding 'abutils/io.py' 2023-10-26T17:37:05,444 adding 'abutils/pl.py' 2023-10-26T17:37:05,445 adding 'abutils/tl.py' 2023-10-26T17:37:05,446 adding 'abutils/version.py' 2023-10-26T17:37:05,474 adding 'abutils/bin/cdhit_darwin_amd64' 2023-10-26T17:37:05,502 adding 'abutils/bin/cdhit_darwin_arm64' 2023-10-26T17:37:05,526 adding 'abutils/bin/cdhit_linux_amd64' 2023-10-26T17:37:05,569 adding 'abutils/bin/fasttree_darwin_amd64' 2023-10-26T17:37:05,630 adding 'abutils/bin/fasttree_darwin_arm64' 2023-10-26T17:37:05,702 adding 'abutils/bin/fasttree_linux_amd64' 2023-10-26T17:37:05,714 adding 'abutils/bin/mafft_darwin' 2023-10-26T17:37:05,723 adding 'abutils/bin/mafft_linux' 2023-10-26T17:37:06,823 adding 'abutils/bin/mmseqs_darwin_amd64' 2023-10-26T17:37:16,326 adding 'abutils/bin/mmseqs_darwin_arm64' 2023-10-26T17:37:23,625 adding 'abutils/bin/mmseqs_linux_amd64' 2023-10-26T17:37:24,066 adding 'abutils/bin/muscle3_darwin' 2023-10-26T17:37:24,131 adding 'abutils/bin/muscle3_linux' 2023-10-26T17:37:24,308 adding 'abutils/bin/muscle_darwin_amd64' 2023-10-26T17:37:24,465 adding 'abutils/bin/muscle_darwin_arm64' 2023-10-26T17:37:24,977 adding 'abutils/bin/muscle_linux_amd64' 2023-10-26T17:37:25,074 adding 'abutils/bin/vsearch_darwin_amd64' 2023-10-26T17:37:25,141 adding 'abutils/bin/vsearch_darwin_arm64' 2023-10-26T17:37:25,454 adding 'abutils/bin/vsearch_linux_amd64' 2023-10-26T17:37:25,472 adding 'abutils/bin/mafft_darwin_amd64/in' 2023-10-26T17:37:25,473 adding 'abutils/bin/mafft_darwin_amd64/mafft.bat' 2023-10-26T17:37:25,485 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/bin/mafft' 2023-10-26T17:37:25,797 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/addsingle' 2023-10-26T17:37:25,962 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/contrafoldwrap' 2023-10-26T17:37:26,013 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/countlen' 2023-10-26T17:37:28,314 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dash_client' 2023-10-26T17:37:28,736 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/disttbfast' 2023-10-26T17:37:28,908 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndblast' 2023-10-26T17:37:29,073 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndfast7' 2023-10-26T17:37:29,232 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dndpre' 2023-10-26T17:37:29,557 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/dvtditr' 2023-10-26T17:37:29,639 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/f2cl' 2023-10-26T17:37:29,771 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/filter' 2023-10-26T17:37:30,067 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/getlag' 2023-10-26T17:37:30,081 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/hex2maffttext' 2023-10-26T17:37:30,246 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-distance' 2023-10-26T17:37:30,248 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-homologs.1' 2023-10-26T17:37:30,531 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft-profile' 2023-10-26T17:37:30,546 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafft.1' 2023-10-26T17:37:30,548 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mafftash_premafft.pl' 2023-10-26T17:37:30,554 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/maffttext2hex' 2023-10-26T17:37:30,852 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/makedirectionlist' 2023-10-26T17:37:31,017 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/mccaskillwrap' 2023-10-26T17:37:31,190 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/multi2hat3s' 2023-10-26T17:37:31,513 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/nodepair' 2023-10-26T17:37:31,818 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairash' 2023-10-26T17:37:32,132 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/pairlocalalign' 2023-10-26T17:37:32,275 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/regtable2seq' 2023-10-26T17:37:32,431 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/replaceu' 2023-10-26T17:37:32,566 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/restoreu' 2023-10-26T17:37:32,724 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/score' 2023-10-26T17:37:32,733 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seekquencer_premafft.pl' 2023-10-26T17:37:32,778 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/seq2regtable' 2023-10-26T17:37:33,064 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setcore' 2023-10-26T17:37:33,205 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/setdirection' 2023-10-26T17:37:33,370 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/sextet5' 2023-10-26T17:37:33,673 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/splittbfast' 2023-10-26T17:37:34,023 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/tbfast' 2023-10-26T17:37:34,043 adding 'abutils/bin/mafft_darwin_amd64/mafftdir/libexec/version' 2023-10-26T17:37:34,045 adding 'abutils/bin/mafft_darwin_arm64/in' 2023-10-26T17:37:34,046 adding 'abutils/bin/mafft_darwin_arm64/mafft.bat' 2023-10-26T17:37:34,058 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/bin/mafft' 2023-10-26T17:37:34,370 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/addsingle' 2023-10-26T17:37:34,537 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/contrafoldwrap' 2023-10-26T17:37:34,587 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/countlen' 2023-10-26T17:37:36,887 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dash_client' 2023-10-26T17:37:37,454 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/disttbfast' 2023-10-26T17:37:37,626 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndblast' 2023-10-26T17:37:37,792 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndfast7' 2023-10-26T17:37:37,951 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dndpre' 2023-10-26T17:37:38,277 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/dvtditr' 2023-10-26T17:37:38,359 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/f2cl' 2023-10-26T17:37:38,491 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/filter' 2023-10-26T17:37:38,781 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/getlag' 2023-10-26T17:37:38,800 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/hex2maffttext' 2023-10-26T17:37:38,959 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-distance' 2023-10-26T17:37:38,969 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-homologs.1' 2023-10-26T17:37:39,252 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft-profile' 2023-10-26T17:37:39,267 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafft.1' 2023-10-26T17:37:39,269 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mafftash_premafft.pl' 2023-10-26T17:37:39,276 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/maffttext2hex' 2023-10-26T17:37:39,574 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/makedirectionlist' 2023-10-26T17:37:39,740 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/mccaskillwrap' 2023-10-26T17:37:39,913 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/multi2hat3s' 2023-10-26T17:37:40,236 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/nodepair' 2023-10-26T17:37:40,542 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairash' 2023-10-26T17:37:40,856 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/pairlocalalign' 2023-10-26T17:37:40,999 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/regtable2seq' 2023-10-26T17:37:41,135 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/replaceu' 2023-10-26T17:37:41,271 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/restoreu' 2023-10-26T17:37:41,428 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/score' 2023-10-26T17:37:41,439 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seekquencer_premafft.pl' 2023-10-26T17:37:41,483 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/seq2regtable' 2023-10-26T17:37:41,770 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setcore' 2023-10-26T17:37:41,912 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/setdirection' 2023-10-26T17:37:42,077 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/sextet5' 2023-10-26T17:37:42,381 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/splittbfast' 2023-10-26T17:37:42,731 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/tbfast' 2023-10-26T17:37:42,751 adding 'abutils/bin/mafft_darwin_arm64/mafftdir/libexec/version' 2023-10-26T17:37:42,754 adding 'abutils/bin/mafft_linux_amd64/mafft.bat' 2023-10-26T17:37:42,766 adding 'abutils/bin/mafft_linux_amd64/mafftdir/bin/mafft' 2023-10-26T17:37:43,022 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/addsingle' 2023-10-26T17:37:43,205 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/contrafoldwrap' 2023-10-26T17:37:43,330 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/countlen' 2023-10-26T17:37:43,341 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_alignments' 2023-10-26T17:37:44,124 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_client' 2023-10-26T17:37:44,160 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dash_sequences.fa' 2023-10-26T17:37:44,419 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/disttbfast' 2023-10-26T17:37:44,604 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndblast' 2023-10-26T17:37:44,787 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndfast7' 2023-10-26T17:37:44,967 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dndpre' 2023-10-26T17:37:45,221 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/dvtditr' 2023-10-26T17:37:45,365 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/f2cl' 2023-10-26T17:37:45,535 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/filter' 2023-10-26T17:37:45,775 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/getlag' 2023-10-26T17:37:45,786 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/hat3' 2023-10-26T17:37:45,889 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/hex2maffttext' 2023-10-26T17:37:46,068 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-distance' 2023-10-26T17:37:46,077 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-homologs.1' 2023-10-26T17:37:46,310 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft-profile' 2023-10-26T17:37:46,322 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafft.1' 2023-10-26T17:37:46,324 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mafftash_premafft.pl' 2023-10-26T17:37:46,428 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/maffttext2hex' 2023-10-26T17:37:46,668 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/makedirectionlist' 2023-10-26T17:37:46,850 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/mccaskillwrap' 2023-10-26T17:37:47,043 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/multi2hat3s' 2023-10-26T17:37:47,294 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/nodepair' 2023-10-26T17:37:47,539 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairash' 2023-10-26T17:37:47,789 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/pairlocalalign' 2023-10-26T17:37:47,962 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/regtable2seq' 2023-10-26T17:37:48,132 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/replaceu' 2023-10-26T17:37:48,303 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/restoreu' 2023-10-26T17:37:48,482 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/score' 2023-10-26T17:37:48,492 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/seekquencer_premafft.pl' 2023-10-26T17:37:48,610 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/seq2regtable' 2023-10-26T17:37:48,848 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/setcore' 2023-10-26T17:37:49,021 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/setdirection' 2023-10-26T17:37:49,202 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/sextet5' 2023-10-26T17:37:49,447 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/splittbfast' 2023-10-26T17:37:49,711 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/tbfast' 2023-10-26T17:37:49,824 adding 'abutils/bin/mafft_linux_amd64/mafftdir/libexec/version' 2023-10-26T17:37:49,831 adding 'abutils/core/__init__.py' 2023-10-26T17:37:49,836 adding 'abutils/core/lineage.py' 2023-10-26T17:37:49,840 adding 'abutils/core/pair.py' 2023-10-26T17:37:49,843 adding 'abutils/core/sequence.py' 2023-10-26T17:37:49,846 adding 'abutils/plots/__init__.py' 2023-10-26T17:37:49,848 adding 'abutils/plots/bar.py' 2023-10-26T17:37:49,850 adding 'abutils/plots/base.py' 2023-10-26T17:37:49,852 adding 'abutils/plots/data.py' 2023-10-26T17:37:49,856 adding 'abutils/plots/donut.py' 2023-10-26T17:37:49,859 adding 'abutils/plots/heatmap.py' 2023-10-26T17:37:49,865 adding 'abutils/plots/kde.py' 2023-10-26T17:37:49,867 adding 'abutils/plots/lineage.py' 2023-10-26T17:37:49,870 adding 'abutils/plots/ridge.py' 2023-10-26T17:37:49,872 adding 'abutils/plots/ring.py' 2023-10-26T17:37:49,875 adding 'abutils/plots/scatter.py' 2023-10-26T17:37:49,878 adding 'abutils/plots/summary.py' 2023-10-26T17:37:49,879 adding 'abutils/plots/utils.py' 2023-10-26T17:37:49,881 adding 'abutils/plots/mixins/__init__.py' 2023-10-26T17:37:49,883 adding 'abutils/plots/mixins/hue.py' 2023-10-26T17:37:49,884 adding 'abutils/plots/models/__init__.py' 2023-10-26T17:37:49,888 adding 'abutils/plots/models/data.py' 2023-10-26T17:37:49,890 adding 'abutils/tests/__init__.py' 2023-10-26T17:37:49,892 adding 'abutils/tests/test_alignment.py' 2023-10-26T17:37:49,894 adding 'abutils/tests/test_clonify.py' 2023-10-26T17:37:49,896 adding 'abutils/tests/test_cluster.py' 2023-10-26T17:37:49,898 adding 'abutils/tests/test_color.py' 2023-10-26T17:37:49,900 adding 'abutils/tests/test_pair.py' 2023-10-26T17:37:49,902 adding 'abutils/tests/test_phylo.py' 2023-10-26T17:37:49,904 adding 'abutils/tests/test_sequence.py' 2023-10-26T17:37:49,905 adding 'abutils/tests/test_utilities.py' 2023-10-26T17:37:49,907 adding 'abutils/tools/__init__.py' 2023-10-26T17:37:49,912 adding 'abutils/tools/alignment.py' 2023-10-26T17:37:49,915 adding 'abutils/tools/clonify.py' 2023-10-26T17:37:49,922 adding 'abutils/tools/cluster.py' 2023-10-26T17:37:49,927 adding 'abutils/tools/phylo.py' 2023-10-26T17:37:49,930 adding 'abutils/tools/similarity.py' 2023-10-26T17:37:49,932 adding 'abutils/utils/__init__.py' 2023-10-26T17:37:49,940 adding 'abutils/utils/alignment.py' 2023-10-26T17:37:49,942 adding 'abutils/utils/circos.py' 2023-10-26T17:37:49,947 adding 'abutils/utils/cluster.py' 2023-10-26T17:37:49,949 adding 'abutils/utils/codons.py' 2023-10-26T17:37:49,951 adding 'abutils/utils/color.py' 2023-10-26T17:37:49,953 adding 'abutils/utils/convert.py' 2023-10-26T17:37:49,955 adding 'abutils/utils/database.py' 2023-10-26T17:37:49,957 adding 'abutils/utils/decorators.py' 2023-10-26T17:37:49,959 adding 'abutils/utils/germlines.py' 2023-10-26T17:37:49,961 adding 'abutils/utils/jobs.py' 2023-10-26T17:37:49,962 adding 'abutils/utils/log.py' 2023-10-26T17:37:49,965 adding 'abutils/utils/mongodb.py' 2023-10-26T17:37:49,969 adding 'abutils/utils/phylogeny.py' 2023-10-26T17:37:49,971 adding 'abutils/utils/pipeline.py' 2023-10-26T17:37:49,973 adding 'abutils/utils/progbar.py' 2023-10-26T17:37:49,975 adding 'abutils/utils/s3.py' 2023-10-26T17:37:49,977 adding 'abutils/utils/seqio.py' 2023-10-26T17:37:49,979 adding 'abutils/utils/ssh_tunnel.py' 2023-10-26T17:37:49,981 adding 'abutils/utils/utilities.py' 2023-10-26T17:37:49,983 adding 'abutils/utils/matrices/blosum62' 2023-10-26T17:37:49,985 adding 'abutils/utils/matrices/match1mismatch0' 2023-10-26T17:37:49,986 adding 'abutils/utils/matrices/match3mismatch2' 2023-10-26T17:37:49,989 adding 'abutils-0.4.4.dist-info/LICENSE' 2023-10-26T17:37:49,990 adding 'abutils-0.4.4.dist-info/METADATA' 2023-10-26T17:37:49,992 adding 'abutils-0.4.4.dist-info/WHEEL' 2023-10-26T17:37:49,993 adding 'abutils-0.4.4.dist-info/top_level.txt' 2023-10-26T17:37:49,996 adding 'abutils-0.4.4.dist-info/RECORD' 2023-10-26T17:37:50,300 removing build/bdist.linux-armv7l/wheel 2023-10-26T17:37:50,560 Building wheel for abutils (setup.py): finished with status 'done' 2023-10-26T17:37:51,661 Created wheel for abutils: filename=abutils-0.4.4-py3-none-any.whl size=94376613 sha256=c6431239a8778cec21099f85b769106599aeb18efcb2b95b7da0a6803add1fc3 2023-10-26T17:37:51,662 Stored in directory: /tmp/pip-ephem-wheel-cache-1kk8fp54/wheels/57/8d/2e/9fa28570d8542b24fa4feff61b464e4a91e139f8296633d1e8 2023-10-26T17:37:51,706 Successfully built abutils 2023-10-26T17:37:53,854 Removed build tracker: '/tmp/pip-build-tracker-wk2oxte9'