2023-10-26T18:52:55,985 Created temporary directory: /tmp/pip-build-tracker-ztjj4db9 2023-10-26T18:52:55,986 Initialized build tracking at /tmp/pip-build-tracker-ztjj4db9 2023-10-26T18:52:55,987 Created build tracker: /tmp/pip-build-tracker-ztjj4db9 2023-10-26T18:52:55,987 Entered build tracker: /tmp/pip-build-tracker-ztjj4db9 2023-10-26T18:52:55,988 Created temporary directory: /tmp/pip-wheel-qzy9uia8 2023-10-26T18:52:55,991 Created temporary directory: /tmp/pip-ephem-wheel-cache-blgrhfaa 2023-10-26T18:52:56,014 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-26T18:52:56,017 2 location(s) to search for versions of cwl-utils: 2023-10-26T18:52:56,017 * https://pypi.org/simple/cwl-utils/ 2023-10-26T18:52:56,017 * https://www.piwheels.org/simple/cwl-utils/ 2023-10-26T18:52:56,018 Fetching project page and analyzing links: https://pypi.org/simple/cwl-utils/ 2023-10-26T18:52:56,019 Getting page https://pypi.org/simple/cwl-utils/ 2023-10-26T18:52:56,020 Found index url https://pypi.org/simple/ 2023-10-26T18:52:56,240 Fetched page https://pypi.org/simple/cwl-utils/ as application/vnd.pypi.simple.v1+json 2023-10-26T18:52:56,250 Found link https://files.pythonhosted.org/packages/0b/d6/9e1315cdaf68c85a4d94d1aae2c1cc50af122bca762588e8ae3c297f272b/cwl-utils-0.1.tar.gz (from https://pypi.org/simple/cwl-utils/) (requires-python:>=3.6), version: 0.1 2023-10-26T18:52:56,251 Found link https://files.pythonhosted.org/packages/64/ca/a591b71c37c2e9aa50766dd98c8b8c32fd51325df81086f5e60201a788c3/cwl-utils-0.2.tar.gz (from https://pypi.org/simple/cwl-utils/) (requires-python:>=3.6), version: 0.2 2023-10-26T18:52:56,252 Skipping link: No binaries permitted for cwl-utils: https://files.pythonhosted.org/packages/93/5c/a7b590dcd52f551d564704cce30a5d6e9f81b6225fb12b3bf51f87c1dada/cwl_utils-0.2-py3-none-any.whl (from https://pypi.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,253 Found link 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https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.13-py3-none-any.whl#sha256=730e728649e1b368cc0215a26032314ff63ed56fab99cfcd62b93deb40574874 (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,478 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.12-py3-none-any.whl#sha256=07ed331c5b05460a00d0043fca891f955a09428ef54114b8c7bd0baab28d2955 (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,478 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.11-py3-none-any.whl#sha256=8172d1856ac407d5e7a7d6e83d150904c8f03350420cf32a3ffd26bfa92f123e (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,478 Skipping link: No binaries permitted for cwl-utils: 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https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.7-py3-none-any.whl#sha256=7e9cf8cf6f91b119d177fa4fb46f926b4cb4a3a152ab88fc0f0aff7196f28395 (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,480 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.6-py3-none-any.whl#sha256=82f7be644023ebabc3f5c071ba9c8a2a8e67ddaefbc22c93209d6a4e7d4f2b6b (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,481 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.5-py3-none-any.whl#sha256=c6a0e6a7b31fbbb13ed1a19acda1f5799d39a2f6417ec153cf02fdca97306718 (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,481 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.4-py3-none-any.whl#sha256=41c00592aaf0e80d3f312de81e1d60d9858fb128a45a2743bb58c7f8291398d1 (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,482 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.3-py3-none-any.whl#sha256=64e0e094726c13419a2b0b7a1e82b8d93b3f4142625c3c4ac90c8f73b4374146 (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,482 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.2-py3-none-any.whl#sha256=50d2590f63f89085c48eeccf5de1278700f73f25b2fcd9b3405feb38b4e5bcff (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,483 Skipping link: No binaries permitted for cwl-utils: https://www.piwheels.org/simple/cwl-utils/cwl_utils-0.1-py3-none-any.whl#sha256=033e34d4ce8ef5c9b9fa5f5b8fbc9a5f79faec2821bac352829a8ed95c7bca9c (from https://www.piwheels.org/simple/cwl-utils/) (requires-python:>=3.6) 2023-10-26T18:52:56,483 Skipping link: not a file: https://www.piwheels.org/simple/cwl-utils/ 2023-10-26T18:52:56,484 Skipping link: not a file: https://pypi.org/simple/cwl-utils/ 2023-10-26T18:52:56,507 Given no hashes to check 1 links for project 'cwl-utils': discarding no candidates 2023-10-26T18:52:56,527 Collecting cwl-utils==0.30 2023-10-26T18:52:56,529 Created temporary directory: /tmp/pip-unpack-nboe6htk 2023-10-26T18:52:56,746 Downloading cwl-utils-0.30.tar.gz (298 kB) 2023-10-26T18:52:57,226 Added cwl-utils==0.30 from https://files.pythonhosted.org/packages/62/22/472f441d29df8fe45a8cf65d6ecef2b9216606dc3649b80774f510004cd0/cwl-utils-0.30.tar.gz to build tracker '/tmp/pip-build-tracker-ztjj4db9' 2023-10-26T18:52:57,229 Running setup.py (path:/tmp/pip-wheel-qzy9uia8/cwl-utils_5d9ae58c900148dc8a4a3b147ac379ef/setup.py) egg_info for package cwl-utils 2023-10-26T18:52:57,230 Created temporary directory: /tmp/pip-pip-egg-info-6jugxd2f 2023-10-26T18:52:57,231 Preparing metadata (setup.py): started 2023-10-26T18:52:57,233 Running command python setup.py egg_info 2023-10-26T18:52:58,319 running egg_info 2023-10-26T18:52:58,321 creating /tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info 2023-10-26T18:52:58,346 writing /tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/PKG-INFO 2023-10-26T18:52:58,350 writing dependency_links to /tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/dependency_links.txt 2023-10-26T18:52:58,352 writing entry points to /tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/entry_points.txt 2023-10-26T18:52:58,354 writing requirements to /tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/requires.txt 2023-10-26T18:52:58,355 writing top-level names to /tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/top_level.txt 2023-10-26T18:52:58,356 writing manifest file '/tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/SOURCES.txt' 2023-10-26T18:52:58,448 reading manifest file '/tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/SOURCES.txt' 2023-10-26T18:52:58,450 reading manifest template 'MANIFEST.in' 2023-10-26T18:52:58,452 warning: no files found matching 'LICENSE.txt' 2023-10-26T18:52:58,458 warning: no files found matching 'testdata/*.yaml' 2023-10-26T18:52:58,466 warning: no previously-included files matching '*~' found anywhere in distribution 2023-10-26T18:52:58,467 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-26T18:52:58,473 writing manifest file '/tmp/pip-pip-egg-info-6jugxd2f/cwl_utils.egg-info/SOURCES.txt' 2023-10-26T18:52:58,584 Preparing metadata (setup.py): finished with status 'done' 2023-10-26T18:52:58,588 Source in /tmp/pip-wheel-qzy9uia8/cwl-utils_5d9ae58c900148dc8a4a3b147ac379ef has version 0.30, which satisfies requirement cwl-utils==0.30 from https://files.pythonhosted.org/packages/62/22/472f441d29df8fe45a8cf65d6ecef2b9216606dc3649b80774f510004cd0/cwl-utils-0.30.tar.gz 2023-10-26T18:52:58,589 Removed cwl-utils==0.30 from https://files.pythonhosted.org/packages/62/22/472f441d29df8fe45a8cf65d6ecef2b9216606dc3649b80774f510004cd0/cwl-utils-0.30.tar.gz from build tracker '/tmp/pip-build-tracker-ztjj4db9' 2023-10-26T18:52:58,595 Created temporary directory: /tmp/pip-unpack-722rkwuk 2023-10-26T18:52:58,596 Created temporary directory: /tmp/pip-unpack-woxfhyxg 2023-10-26T18:52:58,609 Building wheels for collected packages: cwl-utils 2023-10-26T18:52:58,613 Created temporary directory: /tmp/pip-wheel-1lfmhejp 2023-10-26T18:52:58,614 Building wheel for cwl-utils (setup.py): started 2023-10-26T18:52:58,615 Destination directory: /tmp/pip-wheel-1lfmhejp 2023-10-26T18:52:58,616 Running command python setup.py bdist_wheel 2023-10-26T18:52:59,697 running bdist_wheel 2023-10-26T18:52:59,838 running build 2023-10-26T18:52:59,839 running build_py 2023-10-26T18:52:59,869 creating build 2023-10-26T18:52:59,869 creating build/lib 2023-10-26T18:52:59,870 creating build/lib/cwl_utils 2023-10-26T18:52:59,872 copying cwl_utils/cwl_v1_2_expression_refactor.py -> build/lib/cwl_utils 2023-10-26T18:52:59,875 copying cwl_utils/utils.py -> build/lib/cwl_utils 2023-10-26T18:52:59,878 copying cwl_utils/cwl_v1_1_expression_refactor.py -> build/lib/cwl_utils 2023-10-26T18:52:59,881 copying cwl_utils/errors.py -> build/lib/cwl_utils 2023-10-26T18:52:59,883 copying cwl_utils/docker_extract.py -> build/lib/cwl_utils 2023-10-26T18:52:59,885 copying cwl_utils/cite_extract.py -> build/lib/cwl_utils 2023-10-26T18:52:59,887 copying cwl_utils/types.py -> build/lib/cwl_utils 2023-10-26T18:52:59,889 copying cwl_utils/file_formats.py -> build/lib/cwl_utils 2023-10-26T18:52:59,891 copying cwl_utils/image_puller.py -> build/lib/cwl_utils 2023-10-26T18:52:59,894 copying cwl_utils/expression.py -> build/lib/cwl_utils 2023-10-26T18:52:59,896 copying cwl_utils/schemadef.py -> build/lib/cwl_utils 2023-10-26T18:52:59,898 copying cwl_utils/normalizer.py -> build/lib/cwl_utils 2023-10-26T18:52:59,900 copying cwl_utils/expression_refactor.py -> build/lib/cwl_utils 2023-10-26T18:52:59,903 copying cwl_utils/singularity.py -> build/lib/cwl_utils 2023-10-26T18:52:59,905 copying cwl_utils/__init__.py -> build/lib/cwl_utils 2023-10-26T18:52:59,906 copying cwl_utils/pack.py -> build/lib/cwl_utils 2023-10-26T18:52:59,909 copying cwl_utils/loghandler.py -> build/lib/cwl_utils 2023-10-26T18:52:59,911 copying cwl_utils/__meta__.py -> build/lib/cwl_utils 2023-10-26T18:52:59,913 copying cwl_utils/sandboxjs.py -> build/lib/cwl_utils 2023-10-26T18:52:59,916 copying cwl_utils/cwl_v1_0_expression_refactor.py -> build/lib/cwl_utils 2023-10-26T18:52:59,919 copying cwl_utils/graph_split.py -> build/lib/cwl_utils 2023-10-26T18:52:59,922 creating build/lib/cwl_utils/parser 2023-10-26T18:52:59,923 copying cwl_utils/parser/utils.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,926 copying cwl_utils/parser/latest.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,927 copying cwl_utils/parser/cwl_v1_0_utils.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,930 copying cwl_utils/parser/cwl_v1_0.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,944 copying cwl_utils/parser/cwl_v1_2_utils.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,946 copying cwl_utils/parser/cwl_v1_2.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,966 copying cwl_utils/parser/cwl_v1_1_utils.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,968 copying cwl_utils/parser/cwl_v1_1.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,984 copying cwl_utils/parser/__init__.py -> build/lib/cwl_utils/parser 2023-10-26T18:52:59,987 creating build/lib/cwl_utils/tests 2023-10-26T18:52:59,988 copying tests/test_docker_extract.py -> build/lib/cwl_utils/tests 2023-10-26T18:52:59,990 copying tests/test_parser_utils.py -> build/lib/cwl_utils/tests 2023-10-26T18:52:59,993 copying tests/test_format.py -> build/lib/cwl_utils/tests 2023-10-26T18:52:59,995 copying tests/test_js_sandbox.py -> build/lib/cwl_utils/tests 2023-10-26T18:52:59,997 copying tests/test_meta.py -> build/lib/cwl_utils/tests 2023-10-26T18:52:59,999 copying tests/test_utils.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,001 copying tests/test_examples.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,003 copying tests/test_graph_split.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,005 copying tests/test_etools_to_clt.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,007 copying tests/__init__.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,008 copying tests/test_parser.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,011 copying tests/load_cwl_by_path.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,013 copying tests/test_subscope.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,014 copying tests/util.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,016 copying tests/test_cite_extract.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,018 copying tests/test_packing.py -> build/lib/cwl_utils/tests 2023-10-26T18:53:00,020 running egg_info 2023-10-26T18:53:00,051 writing cwl_utils.egg-info/PKG-INFO 2023-10-26T18:53:00,055 writing dependency_links to cwl_utils.egg-info/dependency_links.txt 2023-10-26T18:53:00,057 writing entry points to cwl_utils.egg-info/entry_points.txt 2023-10-26T18:53:00,058 writing requirements to cwl_utils.egg-info/requires.txt 2023-10-26T18:53:00,060 writing top-level names to cwl_utils.egg-info/top_level.txt 2023-10-26T18:53:00,092 reading manifest file 'cwl_utils.egg-info/SOURCES.txt' 2023-10-26T18:53:00,098 reading manifest template 'MANIFEST.in' 2023-10-26T18:53:00,099 warning: no files found matching 'LICENSE.txt' 2023-10-26T18:53:00,104 warning: no files found matching 'testdata/*.yaml' 2023-10-26T18:53:00,111 warning: no previously-included files matching '*~' found anywhere in distribution 2023-10-26T18:53:00,113 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-10-26T18:53:00,121 writing manifest file 'cwl_utils.egg-info/SOURCES.txt' 2023-10-26T18:53:00,125 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'cwl_utils.testdata.checker_wf' is absent from the `packages` configuration. 2023-10-26T18:53:00,125 !! 2023-10-26T18:53:00,126 ******************************************************************************** 2023-10-26T18:53:00,127 ############################ 2023-10-26T18:53:00,127 # Package would be ignored # 2023-10-26T18:53:00,128 ############################ 2023-10-26T18:53:00,128 Python recognizes 'cwl_utils.testdata.checker_wf' as an importable package[^1], 2023-10-26T18:53:00,129 but it is absent from setuptools' `packages` configuration. 2023-10-26T18:53:00,130 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T18:53:00,130 package, please make sure that 'cwl_utils.testdata.checker_wf' is explicitly added 2023-10-26T18:53:00,131 to the `packages` configuration field. 2023-10-26T18:53:00,132 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T18:53:00,133 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T18:53:00,133 instead of `find_packages(...)`/`find:`). 2023-10-26T18:53:00,134 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T18:53:00,135 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T18:53:00,136 If you don't want 'cwl_utils.testdata.checker_wf' to be distributed and are 2023-10-26T18:53:00,137 already explicitly excluding 'cwl_utils.testdata.checker_wf' via 2023-10-26T18:53:00,137 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T18:53:00,138 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T18:53:00,138 combination with a more fine grained `package-data` configuration. 2023-10-26T18:53:00,139 You can read more about "package data files" on setuptools documentation page: 2023-10-26T18:53:00,140 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T18:53:00,142 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T18:53:00,142 even if it does not contain any `.py` files. 2023-10-26T18:53:00,143 On the other hand, currently there is no concept of package data 2023-10-26T18:53:00,144 directory, all directories are treated like packages. 2023-10-26T18:53:00,144 ******************************************************************************** 2023-10-26T18:53:00,145 !! 2023-10-26T18:53:00,146 check.warn(importable) 2023-10-26T18:53:00,147 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'cwl_utils.testdata.types' is absent from the `packages` configuration. 2023-10-26T18:53:00,148 !! 2023-10-26T18:53:00,149 ******************************************************************************** 2023-10-26T18:53:00,150 ############################ 2023-10-26T18:53:00,151 # Package would be ignored # 2023-10-26T18:53:00,151 ############################ 2023-10-26T18:53:00,152 Python recognizes 'cwl_utils.testdata.types' as an importable package[^1], 2023-10-26T18:53:00,152 but it is absent from setuptools' `packages` configuration. 2023-10-26T18:53:00,153 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T18:53:00,153 package, please make sure that 'cwl_utils.testdata.types' is explicitly added 2023-10-26T18:53:00,154 to the `packages` configuration field. 2023-10-26T18:53:00,155 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T18:53:00,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T18:53:00,156 instead of `find_packages(...)`/`find:`). 2023-10-26T18:53:00,157 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T18:53:00,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T18:53:00,158 If you don't want 'cwl_utils.testdata.types' to be distributed and are 2023-10-26T18:53:00,159 already explicitly excluding 'cwl_utils.testdata.types' via 2023-10-26T18:53:00,159 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T18:53:00,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T18:53:00,161 combination with a more fine grained `package-data` configuration. 2023-10-26T18:53:00,162 You can read more about "package data files" on setuptools documentation page: 2023-10-26T18:53:00,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T18:53:00,165 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T18:53:00,165 even if it does not contain any `.py` files. 2023-10-26T18:53:00,166 On the other hand, currently there is no concept of package data 2023-10-26T18:53:00,167 directory, all directories are treated like packages. 2023-10-26T18:53:00,167 ******************************************************************************** 2023-10-26T18:53:00,169 !! 2023-10-26T18:53:00,170 check.warn(importable) 2023-10-26T18:53:00,170 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'cwl_utils.testdata.workflows' is absent from the `packages` configuration. 2023-10-26T18:53:00,171 !! 2023-10-26T18:53:00,172 ******************************************************************************** 2023-10-26T18:53:00,173 ############################ 2023-10-26T18:53:00,173 # Package would be ignored # 2023-10-26T18:53:00,174 ############################ 2023-10-26T18:53:00,175 Python recognizes 'cwl_utils.testdata.workflows' as an importable package[^1], 2023-10-26T18:53:00,176 but it is absent from setuptools' `packages` configuration. 2023-10-26T18:53:00,177 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-26T18:53:00,178 package, please make sure that 'cwl_utils.testdata.workflows' is explicitly added 2023-10-26T18:53:00,180 to the `packages` configuration field. 2023-10-26T18:53:00,182 Alternatively, you can also rely on setuptools' discovery methods 2023-10-26T18:53:00,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-26T18:53:00,184 instead of `find_packages(...)`/`find:`). 2023-10-26T18:53:00,185 You can read more about "package discovery" on setuptools documentation page: 2023-10-26T18:53:00,187 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-26T18:53:00,189 If you don't want 'cwl_utils.testdata.workflows' to be distributed and are 2023-10-26T18:53:00,190 already explicitly excluding 'cwl_utils.testdata.workflows' via 2023-10-26T18:53:00,190 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-26T18:53:00,192 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-26T18:53:00,193 combination with a more fine grained `package-data` configuration. 2023-10-26T18:53:00,194 You can read more about "package data files" on setuptools documentation page: 2023-10-26T18:53:00,195 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-26T18:53:00,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-26T18:53:00,198 even if it does not contain any `.py` files. 2023-10-26T18:53:00,199 On the other hand, currently there is no concept of package data 2023-10-26T18:53:00,199 directory, all directories are treated like packages. 2023-10-26T18:53:00,200 ******************************************************************************** 2023-10-26T18:53:00,202 !! 2023-10-26T18:53:00,202 check.warn(importable) 2023-10-26T18:53:00,203 copying cwl_utils/cwlNodeEngine.js -> build/lib/cwl_utils 2023-10-26T18:53:00,204 copying cwl_utils/cwlNodeEngineJSConsole.js -> build/lib/cwl_utils 2023-10-26T18:53:00,205 copying cwl_utils/cwlNodeEngineWithContext.js -> build/lib/cwl_utils 2023-10-26T18:53:00,205 copying cwl_utils/py.typed -> build/lib/cwl_utils 2023-10-26T18:53:00,206 creating build/lib/cwl_utils/testdata 2023-10-26T18:53:00,206 copying testdata/EDAM_subset.owl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,207 copying testdata/cond-single-source-wf-003.1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,208 copying testdata/cond-single-source-wf-004.1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,209 copying testdata/cond-single-source-wf-005.1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,209 copying testdata/cond-wf-003.1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,210 copying testdata/cond-wf-004.1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,211 copying testdata/cond-wf-005.1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,212 copying testdata/count-lines6-single-source-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,213 copying testdata/count-lines6-single-source-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,213 copying testdata/count-lines6-single-source-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,214 copying testdata/count-lines6-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,215 copying testdata/count-lines6-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,216 copying testdata/count-lines6-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,216 copying testdata/count-lines7-single-source-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,217 copying testdata/count-lines7-single-source-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,218 copying testdata/count-lines7-single-source-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,219 copying testdata/count-lines7-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,219 copying testdata/count-lines7-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,220 copying testdata/count-lines7-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,221 copying testdata/debian_image_id.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,222 copying testdata/dockstore-tool-md5sum.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,222 copying testdata/dockstore-tool-md5sum_v11.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,223 copying testdata/dockstore-tool-md5sum_v12.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,223 copying testdata/echo-tool-packed.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,224 copying testdata/echo_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,225 copying testdata/echo_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,225 copying testdata/echo_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,226 copying testdata/foo-array.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,226 copying testdata/foo.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,227 copying testdata/formattest2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,228 copying testdata/formattest2_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,230 copying testdata/formattest2_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,232 copying testdata/gx_edam.ttl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,234 copying testdata/js-expr-req-wf.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,236 copying testdata/lib.js -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,238 copying testdata/md5sum.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,240 copying testdata/md5sum.input -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,242 copying testdata/md5sum_v11.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,244 copying testdata/md5sum_v12.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,246 copying testdata/record-output-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,248 copying testdata/record-output-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,250 copying testdata/record-output-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,253 copying testdata/record-output_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,255 copying testdata/record-output_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,257 copying testdata/record-output_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,259 copying testdata/scatter-wf1_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,261 copying testdata/scatter-wf1_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,263 copying testdata/scatter-wf1_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,265 copying testdata/scatter-wf2_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,267 copying testdata/scatter-wf2_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,269 copying testdata/scatter-wf2_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,271 copying testdata/scatter-wf3_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,273 copying testdata/scatter-wf3_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,275 copying testdata/scatter-wf3_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,277 copying testdata/seqtk_seq.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,279 copying testdata/stdout-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,281 copying testdata/stdout-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,283 copying testdata/stdout-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,285 copying testdata/step-valuefrom2-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,287 copying testdata/step-valuefrom2-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,289 copying testdata/step-valuefrom2-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,291 copying testdata/step-valuefrom3-wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,293 copying testdata/step-valuefrom3-wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,295 copying testdata/step-valuefrom3-wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,297 copying testdata/step_valuefrom5_wf_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,300 copying testdata/step_valuefrom5_wf_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,302 copying testdata/step_valuefrom5_wf_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,304 copying testdata/step_valuefrom5_wf_with_id_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,306 copying testdata/step_valuefrom5_wf_with_id_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,308 copying testdata/step_valuefrom5_wf_with_id_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,310 copying testdata/wc3-tool_v1_0.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,312 copying testdata/wc3-tool_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,314 copying testdata/wc3-tool_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,316 copying testdata/wf2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,318 copying testdata/workflow_input_format_expr.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,320 copying testdata/workflow_input_format_expr_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,322 copying testdata/workflow_input_format_expr_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,324 copying testdata/workflow_input_sf_expr.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,325 copying testdata/workflow_input_sf_expr_array.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,327 copying testdata/workflow_input_sf_expr_array_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,329 copying testdata/workflow_input_sf_expr_array_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,332 copying testdata/workflow_input_sf_expr_v1_1.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,333 copying testdata/workflow_input_sf_expr_v1_2.cwl -> build/lib/cwl_utils/testdata 2023-10-26T18:53:00,335 creating build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,336 copying testdata/checker_wf/broken-wf.cwl -> build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,338 copying testdata/checker_wf/broken-wf2.cwl -> build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,340 copying testdata/checker_wf/broken-wf3.cwl -> build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,342 copying testdata/checker_wf/cat.cwl -> build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,344 copying testdata/checker_wf/echo.cwl -> build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,346 copying testdata/checker_wf/functional-wf.cwl -> build/lib/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,348 creating build/lib/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,349 copying testdata/remote-cwl/tool1.cwl -> build/lib/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,351 copying testdata/remote-cwl/tool2.cwl -> build/lib/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,353 copying testdata/remote-cwl/wf1.cwl -> build/lib/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,355 creating build/lib/cwl_utils/testdata/types 2023-10-26T18:53:00,356 copying testdata/types/array.yml -> build/lib/cwl_utils/testdata/types 2023-10-26T18:53:00,358 copying testdata/types/recursive.yml -> build/lib/cwl_utils/testdata/types 2023-10-26T18:53:00,360 copying testdata/types/singletype.yml -> build/lib/cwl_utils/testdata/types 2023-10-26T18:53:00,362 copying testdata/types/singletype2.yml -> build/lib/cwl_utils/testdata/types 2023-10-26T18:53:00,363 copying testdata/types/testtypes.yml -> build/lib/cwl_utils/testdata/types 2023-10-26T18:53:00,365 creating build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,366 copying testdata/workflows/count-lines16-wf.cwl -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,368 copying testdata/workflows/import-in-type.cwl -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,370 copying testdata/workflows/parseInt-tool.cwl -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,372 copying testdata/workflows/scatter-wf4.cwl -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,374 copying testdata/workflows/type-import.yaml -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,376 copying testdata/workflows/wc-tool.cwl -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,378 copying testdata/workflows/wf5.cwl -> build/lib/cwl_utils/testdata/workflows 2023-10-26T18:53:00,409 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-26T18:53:00,410 !! 2023-10-26T18:53:00,411 ******************************************************************************** 2023-10-26T18:53:00,412 Please avoid running ``setup.py`` directly. 2023-10-26T18:53:00,412 Instead, use pypa/build, pypa/installer or other 2023-10-26T18:53:00,413 standards-based tools. 2023-10-26T18:53:00,414 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-26T18:53:00,414 ******************************************************************************** 2023-10-26T18:53:00,415 !! 2023-10-26T18:53:00,415 self.initialize_options() 2023-10-26T18:53:00,437 installing to build/bdist.linux-armv7l/wheel 2023-10-26T18:53:00,438 running install 2023-10-26T18:53:00,462 running install_lib 2023-10-26T18:53:00,489 creating build/bdist.linux-armv7l 2023-10-26T18:53:00,489 creating build/bdist.linux-armv7l/wheel 2023-10-26T18:53:00,491 creating build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,492 copying build/lib/cwl_utils/cwl_v1_2_expression_refactor.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,497 creating build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,498 copying build/lib/cwl_utils/tests/test_docker_extract.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,500 copying build/lib/cwl_utils/tests/test_parser_utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,503 copying build/lib/cwl_utils/tests/test_format.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,505 copying build/lib/cwl_utils/tests/test_js_sandbox.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,508 copying build/lib/cwl_utils/tests/test_meta.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,509 copying build/lib/cwl_utils/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,511 copying build/lib/cwl_utils/tests/test_examples.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,513 copying build/lib/cwl_utils/tests/test_graph_split.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,515 copying build/lib/cwl_utils/tests/test_etools_to_clt.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,517 copying build/lib/cwl_utils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,519 copying build/lib/cwl_utils/tests/test_parser.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,521 copying build/lib/cwl_utils/tests/load_cwl_by_path.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,523 copying build/lib/cwl_utils/tests/test_subscope.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,525 copying build/lib/cwl_utils/tests/util.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,527 copying build/lib/cwl_utils/tests/test_cite_extract.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,529 copying build/lib/cwl_utils/tests/test_packing.py -> build/bdist.linux-armv7l/wheel/cwl_utils/tests 2023-10-26T18:53:00,531 copying build/lib/cwl_utils/utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,533 copying build/lib/cwl_utils/cwl_v1_1_expression_refactor.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,537 copying build/lib/cwl_utils/cwlNodeEngineJSConsole.js -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,540 copying build/lib/cwl_utils/errors.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,541 copying build/lib/cwl_utils/docker_extract.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,544 copying build/lib/cwl_utils/cwlNodeEngineWithContext.js -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,545 copying build/lib/cwl_utils/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,547 copying build/lib/cwl_utils/cite_extract.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,549 copying build/lib/cwl_utils/types.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,550 copying build/lib/cwl_utils/file_formats.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,552 copying build/lib/cwl_utils/image_puller.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,554 copying build/lib/cwl_utils/expression.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,557 copying build/lib/cwl_utils/schemadef.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,561 creating build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,562 copying build/lib/cwl_utils/testdata/seqtk_seq.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,564 copying build/lib/cwl_utils/testdata/count-lines7-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,566 copying build/lib/cwl_utils/testdata/step-valuefrom3-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,568 copying build/lib/cwl_utils/testdata/workflow_input_format_expr_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,569 copying build/lib/cwl_utils/testdata/EDAM_subset.owl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,573 copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,574 copying build/lib/cwl_utils/testdata/gx_edam.ttl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,576 copying build/lib/cwl_utils/testdata/stdout-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,578 copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_array.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,580 copying build/lib/cwl_utils/testdata/count-lines7-single-source-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,581 copying build/lib/cwl_utils/testdata/echo-tool-packed.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,584 creating build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,585 copying build/lib/cwl_utils/testdata/checker_wf/broken-wf.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,587 copying build/lib/cwl_utils/testdata/checker_wf/broken-wf2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,588 copying build/lib/cwl_utils/testdata/checker_wf/functional-wf.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,590 copying build/lib/cwl_utils/testdata/checker_wf/echo.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,592 copying build/lib/cwl_utils/testdata/checker_wf/cat.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,594 copying build/lib/cwl_utils/testdata/checker_wf/broken-wf3.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/checker_wf 2023-10-26T18:53:00,596 copying build/lib/cwl_utils/testdata/wc3-tool_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,598 copying build/lib/cwl_utils/testdata/workflow_input_sf_expr.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,600 copying build/lib/cwl_utils/testdata/scatter-wf3_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,601 copying build/lib/cwl_utils/testdata/cond-wf-004.1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,603 copying build/lib/cwl_utils/testdata/wc3-tool_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,605 copying build/lib/cwl_utils/testdata/dockstore-tool-md5sum.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,607 copying build/lib/cwl_utils/testdata/record-output_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,609 copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_array_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,610 copying build/lib/cwl_utils/testdata/count-lines6-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,612 copying build/lib/cwl_utils/testdata/formattest2_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,614 copying build/lib/cwl_utils/testdata/stdout-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,616 copying build/lib/cwl_utils/testdata/foo.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,618 creating build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,618 copying build/lib/cwl_utils/testdata/workflows/wc-tool.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,620 copying build/lib/cwl_utils/testdata/workflows/import-in-type.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,622 copying build/lib/cwl_utils/testdata/workflows/parseInt-tool.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,624 copying build/lib/cwl_utils/testdata/workflows/type-import.yaml -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,625 copying build/lib/cwl_utils/testdata/workflows/wf5.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,627 copying build/lib/cwl_utils/testdata/workflows/count-lines16-wf.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,629 copying build/lib/cwl_utils/testdata/workflows/scatter-wf4.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/workflows 2023-10-26T18:53:00,630 copying build/lib/cwl_utils/testdata/workflow_input_format_expr_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,632 copying build/lib/cwl_utils/testdata/cond-single-source-wf-005.1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,634 copying build/lib/cwl_utils/testdata/formattest2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,636 copying build/lib/cwl_utils/testdata/scatter-wf3_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,637 copying build/lib/cwl_utils/testdata/md5sum_v12.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,639 copying build/lib/cwl_utils/testdata/count-lines6-single-source-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,641 copying build/lib/cwl_utils/testdata/scatter-wf2_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,643 copying build/lib/cwl_utils/testdata/scatter-wf2_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,644 copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_array_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,646 copying build/lib/cwl_utils/testdata/md5sum_v11.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,648 copying build/lib/cwl_utils/testdata/cond-single-source-wf-004.1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,650 copying build/lib/cwl_utils/testdata/workflow_input_format_expr.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,652 copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,653 copying build/lib/cwl_utils/testdata/scatter-wf2_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,655 copying build/lib/cwl_utils/testdata/record-output-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,657 copying build/lib/cwl_utils/testdata/count-lines7-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,659 copying build/lib/cwl_utils/testdata/foo-array.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,660 copying build/lib/cwl_utils/testdata/count-lines6-single-source-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,662 copying build/lib/cwl_utils/testdata/scatter-wf3_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,664 copying build/lib/cwl_utils/testdata/record-output-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,666 copying build/lib/cwl_utils/testdata/step-valuefrom3-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,667 copying build/lib/cwl_utils/testdata/step-valuefrom2-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,669 copying build/lib/cwl_utils/testdata/stdout-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,671 copying build/lib/cwl_utils/testdata/echo_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,673 copying build/lib/cwl_utils/testdata/count-lines6-single-source-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,676 copying build/lib/cwl_utils/testdata/count-lines7-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,677 copying build/lib/cwl_utils/testdata/echo_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,679 copying build/lib/cwl_utils/testdata/scatter-wf1_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,681 copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,683 copying build/lib/cwl_utils/testdata/record-output_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,685 copying build/lib/cwl_utils/testdata/scatter-wf1_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,686 copying build/lib/cwl_utils/testdata/cond-single-source-wf-003.1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,688 copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,690 copying build/lib/cwl_utils/testdata/dockstore-tool-md5sum_v11.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,692 copying build/lib/cwl_utils/testdata/record-output-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,694 copying build/lib/cwl_utils/testdata/count-lines7-single-source-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,695 copying build/lib/cwl_utils/testdata/count-lines6-wf_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,698 creating build/bdist.linux-armv7l/wheel/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,699 copying build/lib/cwl_utils/testdata/remote-cwl/tool1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,701 copying build/lib/cwl_utils/testdata/remote-cwl/tool2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,703 copying build/lib/cwl_utils/testdata/remote-cwl/wf1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/remote-cwl 2023-10-26T18:53:00,705 copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,706 copying build/lib/cwl_utils/testdata/md5sum.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,708 copying build/lib/cwl_utils/testdata/step-valuefrom3-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,710 copying build/lib/cwl_utils/testdata/count-lines6-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,712 creating build/bdist.linux-armv7l/wheel/cwl_utils/testdata/types 2023-10-26T18:53:00,713 copying build/lib/cwl_utils/testdata/types/array.yml -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/types 2023-10-26T18:53:00,715 copying build/lib/cwl_utils/testdata/types/testtypes.yml -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/types 2023-10-26T18:53:00,717 copying build/lib/cwl_utils/testdata/types/singletype.yml -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/types 2023-10-26T18:53:00,718 copying build/lib/cwl_utils/testdata/types/recursive.yml -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/types 2023-10-26T18:53:00,720 copying build/lib/cwl_utils/testdata/types/singletype2.yml -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata/types 2023-10-26T18:53:00,722 copying build/lib/cwl_utils/testdata/lib.js -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,723 copying build/lib/cwl_utils/testdata/dockstore-tool-md5sum_v12.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,725 copying build/lib/cwl_utils/testdata/scatter-wf1_v1_1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,727 copying build/lib/cwl_utils/testdata/debian_image_id.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,728 copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,730 copying build/lib/cwl_utils/testdata/record-output_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,732 copying build/lib/cwl_utils/testdata/echo_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,734 copying build/lib/cwl_utils/testdata/formattest2_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,735 copying build/lib/cwl_utils/testdata/step-valuefrom2-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,737 copying build/lib/cwl_utils/testdata/cond-wf-005.1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,739 copying build/lib/cwl_utils/testdata/md5sum.input -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,741 copying build/lib/cwl_utils/testdata/workflow_input_sf_expr_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,743 copying build/lib/cwl_utils/testdata/cond-wf-003.1.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,744 copying build/lib/cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,746 copying build/lib/cwl_utils/testdata/js-expr-req-wf.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,748 copying build/lib/cwl_utils/testdata/step-valuefrom2-wf_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,750 copying build/lib/cwl_utils/testdata/wc3-tool_v1_2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,752 copying build/lib/cwl_utils/testdata/wf2.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,754 copying build/lib/cwl_utils/testdata/count-lines7-single-source-wf_v1_0.cwl -> build/bdist.linux-armv7l/wheel/cwl_utils/testdata 2023-10-26T18:53:00,756 copying build/lib/cwl_utils/normalizer.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,758 copying build/lib/cwl_utils/expression_refactor.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,760 copying build/lib/cwl_utils/singularity.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,763 creating build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,763 copying build/lib/cwl_utils/parser/utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,766 copying build/lib/cwl_utils/parser/latest.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,768 copying build/lib/cwl_utils/parser/cwl_v1_0_utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,771 copying build/lib/cwl_utils/parser/cwl_v1_0.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,787 copying build/lib/cwl_utils/parser/cwl_v1_2_utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,790 copying build/lib/cwl_utils/parser/cwl_v1_2.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,808 copying build/lib/cwl_utils/parser/cwl_v1_1_utils.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,811 copying build/lib/cwl_utils/parser/cwl_v1_1.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,828 copying build/lib/cwl_utils/parser/__init__.py -> build/bdist.linux-armv7l/wheel/cwl_utils/parser 2023-10-26T18:53:00,831 copying build/lib/cwl_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,833 copying build/lib/cwl_utils/pack.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,836 copying build/lib/cwl_utils/loghandler.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,838 copying build/lib/cwl_utils/__meta__.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,840 copying build/lib/cwl_utils/py.typed -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,842 copying build/lib/cwl_utils/sandboxjs.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,845 copying build/lib/cwl_utils/cwl_v1_0_expression_refactor.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,849 copying build/lib/cwl_utils/graph_split.py -> build/bdist.linux-armv7l/wheel/cwl_utils 2023-10-26T18:53:00,852 running install_egg_info 2023-10-26T18:53:00,898 Copying cwl_utils.egg-info to build/bdist.linux-armv7l/wheel/cwl_utils-0.30-py3.11.egg-info 2023-10-26T18:53:00,912 running install_scripts 2023-10-26T18:53:00,929 creating build/bdist.linux-armv7l/wheel/cwl_utils-0.30.dist-info/WHEEL 2023-10-26T18:53:00,932 creating '/tmp/pip-wheel-1lfmhejp/cwl_utils-0.30-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-26T18:53:00,934 adding 'cwl_utils/__init__.py' 2023-10-26T18:53:00,936 adding 'cwl_utils/__meta__.py' 2023-10-26T18:53:00,937 adding 'cwl_utils/cite_extract.py' 2023-10-26T18:53:00,938 adding 'cwl_utils/cwlNodeEngine.js' 2023-10-26T18:53:00,940 adding 'cwl_utils/cwlNodeEngineJSConsole.js' 2023-10-26T18:53:00,941 adding 'cwl_utils/cwlNodeEngineWithContext.js' 2023-10-26T18:53:00,949 adding 'cwl_utils/cwl_v1_0_expression_refactor.py' 2023-10-26T18:53:00,958 adding 'cwl_utils/cwl_v1_1_expression_refactor.py' 2023-10-26T18:53:00,967 adding 'cwl_utils/cwl_v1_2_expression_refactor.py' 2023-10-26T18:53:00,969 adding 'cwl_utils/docker_extract.py' 2023-10-26T18:53:00,970 adding 'cwl_utils/errors.py' 2023-10-26T18:53:00,973 adding 'cwl_utils/expression.py' 2023-10-26T18:53:00,974 adding 'cwl_utils/expression_refactor.py' 2023-10-26T18:53:00,976 adding 'cwl_utils/file_formats.py' 2023-10-26T18:53:00,978 adding 'cwl_utils/graph_split.py' 2023-10-26T18:53:00,980 adding 'cwl_utils/image_puller.py' 2023-10-26T18:53:00,981 adding 'cwl_utils/loghandler.py' 2023-10-26T18:53:00,982 adding 'cwl_utils/normalizer.py' 2023-10-26T18:53:00,984 adding 'cwl_utils/pack.py' 2023-10-26T18:53:00,985 adding 'cwl_utils/py.typed' 2023-10-26T18:53:00,988 adding 'cwl_utils/sandboxjs.py' 2023-10-26T18:53:00,990 adding 'cwl_utils/schemadef.py' 2023-10-26T18:53:00,991 adding 'cwl_utils/singularity.py' 2023-10-26T18:53:00,992 adding 'cwl_utils/types.py' 2023-10-26T18:53:00,994 adding 'cwl_utils/utils.py' 2023-10-26T18:53:00,996 adding 'cwl_utils/parser/__init__.py' 2023-10-26T18:53:01,034 adding 'cwl_utils/parser/cwl_v1_0.py' 2023-10-26T18:53:01,043 adding 'cwl_utils/parser/cwl_v1_0_utils.py' 2023-10-26T18:53:01,086 adding 'cwl_utils/parser/cwl_v1_1.py' 2023-10-26T18:53:01,096 adding 'cwl_utils/parser/cwl_v1_1_utils.py' 2023-10-26T18:53:01,144 adding 'cwl_utils/parser/cwl_v1_2.py' 2023-10-26T18:53:01,155 adding 'cwl_utils/parser/cwl_v1_2_utils.py' 2023-10-26T18:53:01,156 adding 'cwl_utils/parser/latest.py' 2023-10-26T18:53:01,158 adding 'cwl_utils/parser/utils.py' 2023-10-26T18:53:01,164 adding 'cwl_utils/testdata/EDAM_subset.owl' 2023-10-26T18:53:01,165 adding 'cwl_utils/testdata/cond-single-source-wf-003.1.cwl' 2023-10-26T18:53:01,166 adding 'cwl_utils/testdata/cond-single-source-wf-004.1.cwl' 2023-10-26T18:53:01,168 adding 'cwl_utils/testdata/cond-single-source-wf-005.1.cwl' 2023-10-26T18:53:01,169 adding 'cwl_utils/testdata/cond-wf-003.1.cwl' 2023-10-26T18:53:01,170 adding 'cwl_utils/testdata/cond-wf-004.1.cwl' 2023-10-26T18:53:01,171 adding 'cwl_utils/testdata/cond-wf-005.1.cwl' 2023-10-26T18:53:01,172 adding 'cwl_utils/testdata/count-lines6-single-source-wf_v1_0.cwl' 2023-10-26T18:53:01,173 adding 'cwl_utils/testdata/count-lines6-single-source-wf_v1_1.cwl' 2023-10-26T18:53:01,174 adding 'cwl_utils/testdata/count-lines6-single-source-wf_v1_2.cwl' 2023-10-26T18:53:01,176 adding 'cwl_utils/testdata/count-lines6-wf_v1_0.cwl' 2023-10-26T18:53:01,177 adding 'cwl_utils/testdata/count-lines6-wf_v1_1.cwl' 2023-10-26T18:53:01,178 adding 'cwl_utils/testdata/count-lines6-wf_v1_2.cwl' 2023-10-26T18:53:01,179 adding 'cwl_utils/testdata/count-lines7-single-source-wf_v1_0.cwl' 2023-10-26T18:53:01,180 adding 'cwl_utils/testdata/count-lines7-single-source-wf_v1_1.cwl' 2023-10-26T18:53:01,182 adding 'cwl_utils/testdata/count-lines7-single-source-wf_v1_2.cwl' 2023-10-26T18:53:01,183 adding 'cwl_utils/testdata/count-lines7-wf_v1_0.cwl' 2023-10-26T18:53:01,184 adding 'cwl_utils/testdata/count-lines7-wf_v1_1.cwl' 2023-10-26T18:53:01,185 adding 'cwl_utils/testdata/count-lines7-wf_v1_2.cwl' 2023-10-26T18:53:01,186 adding 'cwl_utils/testdata/debian_image_id.cwl' 2023-10-26T18:53:01,187 adding 'cwl_utils/testdata/dockstore-tool-md5sum.cwl' 2023-10-26T18:53:01,189 adding 'cwl_utils/testdata/dockstore-tool-md5sum_v11.cwl' 2023-10-26T18:53:01,190 adding 'cwl_utils/testdata/dockstore-tool-md5sum_v12.cwl' 2023-10-26T18:53:01,191 adding 'cwl_utils/testdata/echo-tool-packed.cwl' 2023-10-26T18:53:01,192 adding 'cwl_utils/testdata/echo_v1_0.cwl' 2023-10-26T18:53:01,193 adding 'cwl_utils/testdata/echo_v1_1.cwl' 2023-10-26T18:53:01,195 adding 'cwl_utils/testdata/echo_v1_2.cwl' 2023-10-26T18:53:01,196 adding 'cwl_utils/testdata/foo-array.cwl' 2023-10-26T18:53:01,197 adding 'cwl_utils/testdata/foo.cwl' 2023-10-26T18:53:01,198 adding 'cwl_utils/testdata/formattest2.cwl' 2023-10-26T18:53:01,199 adding 'cwl_utils/testdata/formattest2_v1_0.cwl' 2023-10-26T18:53:01,200 adding 'cwl_utils/testdata/formattest2_v1_1.cwl' 2023-10-26T18:53:01,202 adding 'cwl_utils/testdata/gx_edam.ttl' 2023-10-26T18:53:01,203 adding 'cwl_utils/testdata/js-expr-req-wf.cwl' 2023-10-26T18:53:01,204 adding 'cwl_utils/testdata/lib.js' 2023-10-26T18:53:01,205 adding 'cwl_utils/testdata/md5sum.cwl' 2023-10-26T18:53:01,206 adding 'cwl_utils/testdata/md5sum.input' 2023-10-26T18:53:01,207 adding 'cwl_utils/testdata/md5sum_v11.cwl' 2023-10-26T18:53:01,208 adding 'cwl_utils/testdata/md5sum_v12.cwl' 2023-10-26T18:53:01,210 adding 'cwl_utils/testdata/record-output-wf_v1_0.cwl' 2023-10-26T18:53:01,211 adding 'cwl_utils/testdata/record-output-wf_v1_1.cwl' 2023-10-26T18:53:01,212 adding 'cwl_utils/testdata/record-output-wf_v1_2.cwl' 2023-10-26T18:53:01,213 adding 'cwl_utils/testdata/record-output_v1_0.cwl' 2023-10-26T18:53:01,214 adding 'cwl_utils/testdata/record-output_v1_1.cwl' 2023-10-26T18:53:01,216 adding 'cwl_utils/testdata/record-output_v1_2.cwl' 2023-10-26T18:53:01,217 adding 'cwl_utils/testdata/scatter-wf1_v1_0.cwl' 2023-10-26T18:53:01,218 adding 'cwl_utils/testdata/scatter-wf1_v1_1.cwl' 2023-10-26T18:53:01,219 adding 'cwl_utils/testdata/scatter-wf1_v1_2.cwl' 2023-10-26T18:53:01,220 adding 'cwl_utils/testdata/scatter-wf2_v1_0.cwl' 2023-10-26T18:53:01,221 adding 'cwl_utils/testdata/scatter-wf2_v1_1.cwl' 2023-10-26T18:53:01,222 adding 'cwl_utils/testdata/scatter-wf2_v1_2.cwl' 2023-10-26T18:53:01,224 adding 'cwl_utils/testdata/scatter-wf3_v1_0.cwl' 2023-10-26T18:53:01,225 adding 'cwl_utils/testdata/scatter-wf3_v1_1.cwl' 2023-10-26T18:53:01,226 adding 'cwl_utils/testdata/scatter-wf3_v1_2.cwl' 2023-10-26T18:53:01,227 adding 'cwl_utils/testdata/seqtk_seq.cwl' 2023-10-26T18:53:01,228 adding 'cwl_utils/testdata/stdout-wf_v1_0.cwl' 2023-10-26T18:53:01,229 adding 'cwl_utils/testdata/stdout-wf_v1_1.cwl' 2023-10-26T18:53:01,231 adding 'cwl_utils/testdata/stdout-wf_v1_2.cwl' 2023-10-26T18:53:01,232 adding 'cwl_utils/testdata/step-valuefrom2-wf_v1_0.cwl' 2023-10-26T18:53:01,233 adding 'cwl_utils/testdata/step-valuefrom2-wf_v1_1.cwl' 2023-10-26T18:53:01,234 adding 'cwl_utils/testdata/step-valuefrom2-wf_v1_2.cwl' 2023-10-26T18:53:01,235 adding 'cwl_utils/testdata/step-valuefrom3-wf_v1_0.cwl' 2023-10-26T18:53:01,236 adding 'cwl_utils/testdata/step-valuefrom3-wf_v1_1.cwl' 2023-10-26T18:53:01,238 adding 'cwl_utils/testdata/step-valuefrom3-wf_v1_2.cwl' 2023-10-26T18:53:01,239 adding 'cwl_utils/testdata/step_valuefrom5_wf_v1_0.cwl' 2023-10-26T18:53:01,240 adding 'cwl_utils/testdata/step_valuefrom5_wf_v1_1.cwl' 2023-10-26T18:53:01,241 adding 'cwl_utils/testdata/step_valuefrom5_wf_v1_2.cwl' 2023-10-26T18:53:01,243 adding 'cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_0.cwl' 2023-10-26T18:53:01,244 adding 'cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_1.cwl' 2023-10-26T18:53:01,245 adding 'cwl_utils/testdata/step_valuefrom5_wf_with_id_v1_2.cwl' 2023-10-26T18:53:01,246 adding 'cwl_utils/testdata/wc3-tool_v1_0.cwl' 2023-10-26T18:53:01,247 adding 'cwl_utils/testdata/wc3-tool_v1_1.cwl' 2023-10-26T18:53:01,248 adding 'cwl_utils/testdata/wc3-tool_v1_2.cwl' 2023-10-26T18:53:01,250 adding 'cwl_utils/testdata/wf2.cwl' 2023-10-26T18:53:01,251 adding 'cwl_utils/testdata/workflow_input_format_expr.cwl' 2023-10-26T18:53:01,252 adding 'cwl_utils/testdata/workflow_input_format_expr_v1_1.cwl' 2023-10-26T18:53:01,253 adding 'cwl_utils/testdata/workflow_input_format_expr_v1_2.cwl' 2023-10-26T18:53:01,254 adding 'cwl_utils/testdata/workflow_input_sf_expr.cwl' 2023-10-26T18:53:01,255 adding 'cwl_utils/testdata/workflow_input_sf_expr_array.cwl' 2023-10-26T18:53:01,257 adding 'cwl_utils/testdata/workflow_input_sf_expr_array_v1_1.cwl' 2023-10-26T18:53:01,258 adding 'cwl_utils/testdata/workflow_input_sf_expr_array_v1_2.cwl' 2023-10-26T18:53:01,259 adding 'cwl_utils/testdata/workflow_input_sf_expr_v1_1.cwl' 2023-10-26T18:53:01,260 adding 'cwl_utils/testdata/workflow_input_sf_expr_v1_2.cwl' 2023-10-26T18:53:01,262 adding 'cwl_utils/testdata/checker_wf/broken-wf.cwl' 2023-10-26T18:53:01,263 adding 'cwl_utils/testdata/checker_wf/broken-wf2.cwl' 2023-10-26T18:53:01,264 adding 'cwl_utils/testdata/checker_wf/broken-wf3.cwl' 2023-10-26T18:53:01,265 adding 'cwl_utils/testdata/checker_wf/cat.cwl' 2023-10-26T18:53:01,266 adding 'cwl_utils/testdata/checker_wf/echo.cwl' 2023-10-26T18:53:01,268 adding 'cwl_utils/testdata/checker_wf/functional-wf.cwl' 2023-10-26T18:53:01,269 adding 'cwl_utils/testdata/remote-cwl/tool1.cwl' 2023-10-26T18:53:01,270 adding 'cwl_utils/testdata/remote-cwl/tool2.cwl' 2023-10-26T18:53:01,272 adding 'cwl_utils/testdata/remote-cwl/wf1.cwl' 2023-10-26T18:53:01,273 adding 'cwl_utils/testdata/types/array.yml' 2023-10-26T18:53:01,274 adding 'cwl_utils/testdata/types/recursive.yml' 2023-10-26T18:53:01,276 adding 'cwl_utils/testdata/types/singletype.yml' 2023-10-26T18:53:01,277 adding 'cwl_utils/testdata/types/singletype2.yml' 2023-10-26T18:53:01,278 adding 'cwl_utils/testdata/types/testtypes.yml' 2023-10-26T18:53:01,280 adding 'cwl_utils/testdata/workflows/count-lines16-wf.cwl' 2023-10-26T18:53:01,281 adding 'cwl_utils/testdata/workflows/import-in-type.cwl' 2023-10-26T18:53:01,282 adding 'cwl_utils/testdata/workflows/parseInt-tool.cwl' 2023-10-26T18:53:01,283 adding 'cwl_utils/testdata/workflows/scatter-wf4.cwl' 2023-10-26T18:53:01,284 adding 'cwl_utils/testdata/workflows/type-import.yaml' 2023-10-26T18:53:01,285 adding 'cwl_utils/testdata/workflows/wc-tool.cwl' 2023-10-26T18:53:01,286 adding 'cwl_utils/testdata/workflows/wf5.cwl' 2023-10-26T18:53:01,288 adding 'cwl_utils/tests/__init__.py' 2023-10-26T18:53:01,289 adding 'cwl_utils/tests/load_cwl_by_path.py' 2023-10-26T18:53:01,290 adding 'cwl_utils/tests/test_cite_extract.py' 2023-10-26T18:53:01,291 adding 'cwl_utils/tests/test_docker_extract.py' 2023-10-26T18:53:01,293 adding 'cwl_utils/tests/test_etools_to_clt.py' 2023-10-26T18:53:01,294 adding 'cwl_utils/tests/test_examples.py' 2023-10-26T18:53:01,295 adding 'cwl_utils/tests/test_format.py' 2023-10-26T18:53:01,297 adding 'cwl_utils/tests/test_graph_split.py' 2023-10-26T18:53:01,298 adding 'cwl_utils/tests/test_js_sandbox.py' 2023-10-26T18:53:01,299 adding 'cwl_utils/tests/test_meta.py' 2023-10-26T18:53:01,300 adding 'cwl_utils/tests/test_packing.py' 2023-10-26T18:53:01,302 adding 'cwl_utils/tests/test_parser.py' 2023-10-26T18:53:01,305 adding 'cwl_utils/tests/test_parser_utils.py' 2023-10-26T18:53:01,306 adding 'cwl_utils/tests/test_subscope.py' 2023-10-26T18:53:01,307 adding 'cwl_utils/tests/test_utils.py' 2023-10-26T18:53:01,309 adding 'cwl_utils/tests/util.py' 2023-10-26T18:53:01,311 adding 'cwl_utils-0.30.dist-info/METADATA' 2023-10-26T18:53:01,312 adding 'cwl_utils-0.30.dist-info/WHEEL' 2023-10-26T18:53:01,313 adding 'cwl_utils-0.30.dist-info/entry_points.txt' 2023-10-26T18:53:01,314 adding 'cwl_utils-0.30.dist-info/top_level.txt' 2023-10-26T18:53:01,316 adding 'cwl_utils-0.30.dist-info/RECORD' 2023-10-26T18:53:01,323 removing build/bdist.linux-armv7l/wheel 2023-10-26T18:53:01,470 Building wheel for cwl-utils (setup.py): finished with status 'done' 2023-10-26T18:53:01,477 Created wheel for cwl-utils: filename=cwl_utils-0.30-py3-none-any.whl size=349355 sha256=61467de36d214f91a9ef421c8b17cddd7c028d247b0bc0927a40971959437d85 2023-10-26T18:53:01,478 Stored in directory: /tmp/pip-ephem-wheel-cache-blgrhfaa/wheels/c6/b5/6e/cca26d870b841b955556af46e52222420baafd749420697b5e 2023-10-26T18:53:01,493 Successfully built cwl-utils 2023-10-26T18:53:01,512 Removed build tracker: '/tmp/pip-build-tracker-ztjj4db9'