2023-10-27T12:40:01,180 Created temporary directory: /tmp/pip-build-tracker-59di4i3y 2023-10-27T12:40:01,181 Initialized build tracking at /tmp/pip-build-tracker-59di4i3y 2023-10-27T12:40:01,181 Created build tracker: /tmp/pip-build-tracker-59di4i3y 2023-10-27T12:40:01,182 Entered build tracker: /tmp/pip-build-tracker-59di4i3y 2023-10-27T12:40:01,183 Created temporary directory: /tmp/pip-wheel-nwst9flx 2023-10-27T12:40:01,186 Created temporary directory: /tmp/pip-ephem-wheel-cache-nv746jh0 2023-10-27T12:40:01,209 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-27T12:40:01,213 2 location(s) to search for versions of nnunetv2: 2023-10-27T12:40:01,213 * https://pypi.org/simple/nnunetv2/ 2023-10-27T12:40:01,213 * https://www.piwheels.org/simple/nnunetv2/ 2023-10-27T12:40:01,214 Fetching project page and analyzing links: https://pypi.org/simple/nnunetv2/ 2023-10-27T12:40:01,215 Getting page https://pypi.org/simple/nnunetv2/ 2023-10-27T12:40:01,216 Found index url https://pypi.org/simple/ 2023-10-27T12:40:01,429 Fetched page https://pypi.org/simple/nnunetv2/ as application/vnd.pypi.simple.v1+json 2023-10-27T12:40:01,431 Found link https://files.pythonhosted.org/packages/e9/76/b07d94295b8680333c267420cb8fe68780c1f0330b01f83de221e14398f8/nnunetv2-2.0.tar.gz (from https://pypi.org/simple/nnunetv2/), version: 2.0 2023-10-27T12:40:01,432 Found link https://files.pythonhosted.org/packages/ec/d6/1db7ccf9b55e60ef9f1201ce7086b69dc87e4a0ace0a9779d7763097ff4f/nnunetv2-2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1 2023-10-27T12:40:01,433 Found link https://files.pythonhosted.org/packages/75/0c/970bded1a4462ac6dfe97aaa8cfe2ae96e24597d26da6a3d7be829832bb3/nnunetv2-2.1.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.1.2 2023-10-27T12:40:01,434 Found link https://files.pythonhosted.org/packages/23/ec/d5a80410ed705da963c4df59ae27bea4d28ca2861949275751c2087706c2/nnunetv2-2.2.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2 2023-10-27T12:40:01,435 Found link https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz (from https://pypi.org/simple/nnunetv2/) (requires-python:>=3.9), version: 2.2.1 2023-10-27T12:40:01,436 Fetching project page and analyzing links: https://www.piwheels.org/simple/nnunetv2/ 2023-10-27T12:40:01,436 Getting page https://www.piwheels.org/simple/nnunetv2/ 2023-10-27T12:40:01,438 Found index url https://www.piwheels.org/simple/ 2023-10-27T12:40:01,604 Fetched page https://www.piwheels.org/simple/nnunetv2/ as text/html 2023-10-27T12:40:01,606 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.2-py3-none-any.whl#sha256=cead7a9af00a7bae7c46333d240c36c082516e6c2449992d0310326d844c0bd7 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2023-10-27T12:40:01,606 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1.2-py3-none-any.whl#sha256=cbd7dda5e9ec83dff80a22a1493aee15145e11cabc0783dd921d613484f08b77 (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2023-10-27T12:40:01,607 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.1-py3-none-any.whl#sha256=1aaa6b18e813f011d50ac92dd2b1a35512438d54a3dd7d63dc8dee150c5ab3ee (from https://www.piwheels.org/simple/nnunetv2/) (requires-python:>=3.9) 2023-10-27T12:40:01,608 Skipping link: No binaries permitted for nnunetv2: https://www.piwheels.org/simple/nnunetv2/nnunetv2-2.0-py3-none-any.whl#sha256=fdacc5b6c5ae86113368c37f25e21643894052a24c65235ffff6c37a0d1a7b31 (from https://www.piwheels.org/simple/nnunetv2/) 2023-10-27T12:40:01,608 Skipping link: not a file: https://www.piwheels.org/simple/nnunetv2/ 2023-10-27T12:40:01,609 Skipping link: not a file: https://pypi.org/simple/nnunetv2/ 2023-10-27T12:40:01,629 Given no hashes to check 1 links for project 'nnunetv2': discarding no candidates 2023-10-27T12:40:01,648 Collecting nnunetv2==2.2.1 2023-10-27T12:40:01,651 Created temporary directory: /tmp/pip-unpack-2mi_fnqe 2023-10-27T12:40:01,865 Downloading nnunetv2-2.2.1.tar.gz (178 kB) 2023-10-27T12:40:02,249 Added nnunetv2==2.2.1 from https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-59di4i3y' 2023-10-27T12:40:02,255 Created temporary directory: /tmp/pip-build-env-s0ue84dp 2023-10-27T12:40:02,259 Installing build dependencies: started 2023-10-27T12:40:02,260 Running command pip subprocess to install build dependencies 2023-10-27T12:40:03,395 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-10-27T12:40:03,891 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-27T12:40:05,509 Collecting setuptools>=40.8.0 2023-10-27T12:40:05,573 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-27T12:40:05,811 Collecting wheel 2023-10-27T12:40:05,826 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-27T12:40:08,388 Installing collected packages: wheel, setuptools 2023-10-27T12:40:08,612 Creating /tmp/pip-build-env-s0ue84dp/overlay/local/bin 2023-10-27T12:40:08,614 changing mode of /tmp/pip-build-env-s0ue84dp/overlay/local/bin/wheel to 755 2023-10-27T12:40:10,822 Successfully installed setuptools-68.2.2 wheel-0.41.2 2023-10-27T12:40:11,109 [notice] A new release of pip is available: 23.2.1 -> 23.3.1 2023-10-27T12:40:11,110 [notice] To update, run: python3 -m pip install --upgrade pip 2023-10-27T12:40:11,380 Installing build dependencies: finished with status 'done' 2023-10-27T12:40:11,383 Getting requirements to build wheel: started 2023-10-27T12:40:11,384 Running command Getting requirements to build wheel 2023-10-27T12:40:12,286 running egg_info 2023-10-27T12:40:12,291 writing nnunetv2.egg-info/PKG-INFO 2023-10-27T12:40:12,297 writing dependency_links to nnunetv2.egg-info/dependency_links.txt 2023-10-27T12:40:12,300 writing entry points to nnunetv2.egg-info/entry_points.txt 2023-10-27T12:40:12,302 writing requirements to nnunetv2.egg-info/requires.txt 2023-10-27T12:40:12,303 writing top-level names to nnunetv2.egg-info/top_level.txt 2023-10-27T12:40:12,346 reading manifest file 'nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:12,352 adding license file 'LICENSE' 2023-10-27T12:40:12,361 writing manifest file 'nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:12,480 Getting requirements to build wheel: finished with status 'done' 2023-10-27T12:40:12,491 Created temporary directory: /tmp/pip-modern-metadata-oc6fvxze 2023-10-27T12:40:12,493 Preparing metadata (pyproject.toml): started 2023-10-27T12:40:12,494 Running command Preparing metadata (pyproject.toml) 2023-10-27T12:40:13,306 running dist_info 2023-10-27T12:40:13,312 creating /tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info 2023-10-27T12:40:13,316 writing /tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/PKG-INFO 2023-10-27T12:40:13,322 writing dependency_links to /tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/dependency_links.txt 2023-10-27T12:40:13,325 writing entry points to /tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/entry_points.txt 2023-10-27T12:40:13,327 writing requirements to /tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/requires.txt 2023-10-27T12:40:13,328 writing top-level names to /tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/top_level.txt 2023-10-27T12:40:13,330 writing manifest file '/tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:13,369 reading manifest file '/tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:13,371 adding license file 'LICENSE' 2023-10-27T12:40:13,378 writing manifest file '/tmp/pip-modern-metadata-oc6fvxze/nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:13,380 creating '/tmp/pip-modern-metadata-oc6fvxze/nnunetv2-2.2.1.dist-info' 2023-10-27T12:40:13,541 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-27T12:40:13,549 Source in /tmp/pip-wheel-nwst9flx/nnunetv2_c7be6c4728c54bd695c78d459cdcc58c has version 2.2.1, which satisfies requirement nnunetv2==2.2.1 from https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz 2023-10-27T12:40:13,550 Removed nnunetv2==2.2.1 from https://files.pythonhosted.org/packages/cc/34/e089ded4d1fbe0dabca3f5c23b47c73c3ace4c5666cb5fdaeb2083a28e62/nnunetv2-2.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-59di4i3y' 2023-10-27T12:40:13,562 Created temporary directory: /tmp/pip-unpack-t1qb352j 2023-10-27T12:40:13,563 Created temporary directory: /tmp/pip-unpack-n7fstxx0 2023-10-27T12:40:13,601 Building wheels for collected packages: nnunetv2 2023-10-27T12:40:13,605 Created temporary directory: /tmp/pip-wheel-_yw3komt 2023-10-27T12:40:13,606 Destination directory: /tmp/pip-wheel-_yw3komt 2023-10-27T12:40:13,608 Building wheel for nnunetv2 (pyproject.toml): started 2023-10-27T12:40:13,609 Running command Building wheel for nnunetv2 (pyproject.toml) 2023-10-27T12:40:14,390 running bdist_wheel 2023-10-27T12:40:14,411 running build 2023-10-27T12:40:14,412 running build_py 2023-10-27T12:40:14,417 creating build 2023-10-27T12:40:14,417 creating build/lib 2023-10-27T12:40:14,418 creating build/lib/nnunetv2 2023-10-27T12:40:14,420 copying nnunetv2/__init__.py -> build/lib/nnunetv2 2023-10-27T12:40:14,421 copying nnunetv2/paths.py -> build/lib/nnunetv2 2023-10-27T12:40:14,423 copying nnunetv2/configuration.py -> build/lib/nnunetv2 2023-10-27T12:40:14,425 creating build/lib/nnunetv2/training 2023-10-27T12:40:14,426 copying nnunetv2/training/__init__.py -> build/lib/nnunetv2/training 2023-10-27T12:40:14,428 creating build/lib/nnunetv2/evaluation 2023-10-27T12:40:14,429 copying nnunetv2/evaluation/accumulate_cv_results.py -> build/lib/nnunetv2/evaluation 2023-10-27T12:40:14,432 copying nnunetv2/evaluation/evaluate_predictions.py -> build/lib/nnunetv2/evaluation 2023-10-27T12:40:14,434 copying nnunetv2/evaluation/__init__.py -> build/lib/nnunetv2/evaluation 2023-10-27T12:40:14,435 copying nnunetv2/evaluation/find_best_configuration.py -> build/lib/nnunetv2/evaluation 2023-10-27T12:40:14,439 creating build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,440 copying nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,442 copying nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,444 copying nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,446 copying nnunetv2/dataset_conversion/generate_dataset_json.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,447 copying nnunetv2/dataset_conversion/__init__.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,449 copying nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,451 copying nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,453 copying nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,455 copying nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,457 copying nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,459 copying nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,461 copying nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,463 copying nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,465 copying nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,466 copying nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/lib/nnunetv2/dataset_conversion 2023-10-27T12:40:14,469 creating build/lib/nnunetv2/tests 2023-10-27T12:40:14,470 copying nnunetv2/tests/__init__.py -> build/lib/nnunetv2/tests 2023-10-27T12:40:14,472 creating build/lib/nnunetv2/model_sharing 2023-10-27T12:40:14,472 copying nnunetv2/model_sharing/model_import.py -> build/lib/nnunetv2/model_sharing 2023-10-27T12:40:14,474 copying nnunetv2/model_sharing/__init__.py -> build/lib/nnunetv2/model_sharing 2023-10-27T12:40:14,475 copying nnunetv2/model_sharing/entry_points.py -> build/lib/nnunetv2/model_sharing 2023-10-27T12:40:14,477 copying nnunetv2/model_sharing/model_export.py -> build/lib/nnunetv2/model_sharing 2023-10-27T12:40:14,479 copying nnunetv2/model_sharing/model_download.py -> build/lib/nnunetv2/model_sharing 2023-10-27T12:40:14,481 creating build/lib/nnunetv2/batch_running 2023-10-27T12:40:14,482 copying nnunetv2/batch_running/__init__.py -> build/lib/nnunetv2/batch_running 2023-10-27T12:40:14,484 copying nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/lib/nnunetv2/batch_running 2023-10-27T12:40:14,485 copying nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/lib/nnunetv2/batch_running 2023-10-27T12:40:14,487 copying nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/lib/nnunetv2/batch_running 2023-10-27T12:40:14,490 creating build/lib/nnunetv2/run 2023-10-27T12:40:14,491 copying nnunetv2/run/__init__.py -> build/lib/nnunetv2/run 2023-10-27T12:40:14,492 copying nnunetv2/run/run_training.py -> build/lib/nnunetv2/run 2023-10-27T12:40:14,495 copying nnunetv2/run/load_pretrained_weights.py -> build/lib/nnunetv2/run 2023-10-27T12:40:14,497 creating build/lib/nnunetv2/preprocessing 2023-10-27T12:40:14,498 copying nnunetv2/preprocessing/__init__.py -> build/lib/nnunetv2/preprocessing 2023-10-27T12:40:14,500 creating build/lib/nnunetv2/utilities 2023-10-27T12:40:14,501 copying nnunetv2/utilities/dataset_name_id_conversion.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,503 copying nnunetv2/utilities/__init__.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,505 copying nnunetv2/utilities/get_network_from_plans.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,506 copying nnunetv2/utilities/collate_outputs.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,508 copying nnunetv2/utilities/ddp_allgather.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,510 copying nnunetv2/utilities/json_export.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,512 copying nnunetv2/utilities/default_n_proc_DA.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,514 copying nnunetv2/utilities/find_class_by_name.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,515 copying nnunetv2/utilities/utils.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,517 copying nnunetv2/utilities/overlay_plots.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,519 copying nnunetv2/utilities/helpers.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,521 copying nnunetv2/utilities/network_initialization.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,523 copying nnunetv2/utilities/file_path_utilities.py -> build/lib/nnunetv2/utilities 2023-10-27T12:40:14,525 creating build/lib/nnunetv2/postprocessing 2023-10-27T12:40:14,526 copying nnunetv2/postprocessing/__init__.py -> build/lib/nnunetv2/postprocessing 2023-10-27T12:40:14,528 copying nnunetv2/postprocessing/remove_connected_components.py -> build/lib/nnunetv2/postprocessing 2023-10-27T12:40:14,531 creating build/lib/nnunetv2/imageio 2023-10-27T12:40:14,532 copying nnunetv2/imageio/__init__.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,534 copying nnunetv2/imageio/tif_reader_writer.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,536 copying nnunetv2/imageio/nibabel_reader_writer.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,538 copying nnunetv2/imageio/simpleitk_reader_writer.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,540 copying nnunetv2/imageio/natural_image_reager_writer.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,542 copying nnunetv2/imageio/base_reader_writer.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,544 copying nnunetv2/imageio/reader_writer_registry.py -> build/lib/nnunetv2/imageio 2023-10-27T12:40:14,546 creating build/lib/nnunetv2/ensembling 2023-10-27T12:40:14,547 copying nnunetv2/ensembling/__init__.py -> build/lib/nnunetv2/ensembling 2023-10-27T12:40:14,548 copying nnunetv2/ensembling/ensemble.py -> build/lib/nnunetv2/ensembling 2023-10-27T12:40:14,551 creating build/lib/nnunetv2/inference 2023-10-27T12:40:14,552 copying nnunetv2/inference/export_prediction.py -> build/lib/nnunetv2/inference 2023-10-27T12:40:14,554 copying nnunetv2/inference/__init__.py -> build/lib/nnunetv2/inference 2023-10-27T12:40:14,556 copying nnunetv2/inference/sliding_window_prediction.py -> build/lib/nnunetv2/inference 2023-10-27T12:40:14,558 copying nnunetv2/inference/data_iterators.py -> build/lib/nnunetv2/inference 2023-10-27T12:40:14,560 copying nnunetv2/inference/predict_from_raw_data.py -> build/lib/nnunetv2/inference 2023-10-27T12:40:14,563 copying nnunetv2/inference/examples.py -> build/lib/nnunetv2/inference 2023-10-27T12:40:14,566 creating build/lib/nnunetv2/experiment_planning 2023-10-27T12:40:14,567 copying nnunetv2/experiment_planning/__init__.py -> build/lib/nnunetv2/experiment_planning 2023-10-27T12:40:14,568 copying nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/lib/nnunetv2/experiment_planning 2023-10-27T12:40:14,571 copying nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/lib/nnunetv2/experiment_planning 2023-10-27T12:40:14,573 copying nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/lib/nnunetv2/experiment_planning 2023-10-27T12:40:14,576 creating build/lib/nnunetv2/training/loss 2023-10-27T12:40:14,577 copying nnunetv2/training/loss/compound_losses.py -> build/lib/nnunetv2/training/loss 2023-10-27T12:40:14,579 copying nnunetv2/training/loss/__init__.py -> build/lib/nnunetv2/training/loss 2023-10-27T12:40:14,581 copying nnunetv2/training/loss/robust_ce_loss.py -> build/lib/nnunetv2/training/loss 2023-10-27T12:40:14,582 copying nnunetv2/training/loss/deep_supervision.py -> build/lib/nnunetv2/training/loss 2023-10-27T12:40:14,584 copying nnunetv2/training/loss/dice.py -> build/lib/nnunetv2/training/loss 2023-10-27T12:40:14,586 creating build/lib/nnunetv2/training/data_augmentation 2023-10-27T12:40:14,587 copying nnunetv2/training/data_augmentation/__init__.py -> build/lib/nnunetv2/training/data_augmentation 2023-10-27T12:40:14,589 copying nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/lib/nnunetv2/training/data_augmentation 2023-10-27T12:40:14,591 creating build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,592 copying nnunetv2/training/dataloading/data_loader_3d.py -> build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,594 copying nnunetv2/training/dataloading/base_data_loader.py -> build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,596 copying nnunetv2/training/dataloading/__init__.py -> build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,597 copying nnunetv2/training/dataloading/nnunet_dataset.py -> build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,599 copying nnunetv2/training/dataloading/utils.py -> build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,601 copying nnunetv2/training/dataloading/data_loader_2d.py -> build/lib/nnunetv2/training/dataloading 2023-10-27T12:40:14,604 creating build/lib/nnunetv2/training/logging 2023-10-27T12:40:14,605 copying nnunetv2/training/logging/__init__.py -> build/lib/nnunetv2/training/logging 2023-10-27T12:40:14,606 copying nnunetv2/training/logging/nnunet_logger.py -> build/lib/nnunetv2/training/logging 2023-10-27T12:40:14,609 creating build/lib/nnunetv2/training/nnUNetTrainer 2023-10-27T12:40:14,610 copying nnunetv2/training/nnUNetTrainer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer 2023-10-27T12:40:14,611 copying nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/lib/nnunetv2/training/nnUNetTrainer 2023-10-27T12:40:14,615 creating build/lib/nnunetv2/training/lr_scheduler 2023-10-27T12:40:14,616 copying nnunetv2/training/lr_scheduler/__init__.py -> build/lib/nnunetv2/training/lr_scheduler 2023-10-27T12:40:14,617 copying nnunetv2/training/lr_scheduler/polylr.py -> build/lib/nnunetv2/training/lr_scheduler 2023-10-27T12:40:14,619 creating build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,620 copying nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,622 copying nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,624 copying nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,625 copying nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,627 copying nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,628 copying nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,630 copying nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,632 copying nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/lib/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,634 creating build/lib/nnunetv2/training/nnUNetTrainer/variants 2023-10-27T12:40:14,635 copying nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants 2023-10-27T12:40:14,637 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2023-10-27T12:40:14,638 copying nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2023-10-27T12:40:14,639 copying nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling 2023-10-27T12:40:14,642 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,643 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,645 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,646 copying nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,649 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,650 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,652 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,653 copying nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,655 copying nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,657 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,658 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,660 copying nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,661 copying nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,663 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2023-10-27T12:40:14,664 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2023-10-27T12:40:14,666 copying nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2023-10-27T12:40:14,668 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,669 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,672 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,673 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,675 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,677 copying nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,679 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:14,680 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:14,682 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:14,683 copying nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:14,685 creating build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:14,686 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:14,688 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:14,690 copying nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:14,693 creating build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:14,694 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:14,695 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:14,697 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:14,699 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:14,701 copying nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:14,703 creating build/lib/nnunetv2/tests/integration_tests 2023-10-27T12:40:14,704 copying nnunetv2/tests/integration_tests/__init__.py -> build/lib/nnunetv2/tests/integration_tests 2023-10-27T12:40:14,706 copying nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/lib/nnunetv2/tests/integration_tests 2023-10-27T12:40:14,707 copying nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/lib/nnunetv2/tests/integration_tests 2023-10-27T12:40:14,709 copying nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/lib/nnunetv2/tests/integration_tests 2023-10-27T12:40:14,711 creating build/lib/nnunetv2/batch_running/release_trainings 2023-10-27T12:40:14,712 copying nnunetv2/batch_running/release_trainings/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings 2023-10-27T12:40:14,714 creating build/lib/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:14,715 copying nnunetv2/batch_running/benchmarking/__init__.py -> build/lib/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:14,716 copying nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/lib/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:14,718 copying nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/lib/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:14,721 creating build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:14,722 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:14,723 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:14,725 copying nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:14,728 creating build/lib/nnunetv2/preprocessing/cropping 2023-10-27T12:40:14,729 copying nnunetv2/preprocessing/cropping/__init__.py -> build/lib/nnunetv2/preprocessing/cropping 2023-10-27T12:40:14,730 copying nnunetv2/preprocessing/cropping/cropping.py -> build/lib/nnunetv2/preprocessing/cropping 2023-10-27T12:40:14,732 creating build/lib/nnunetv2/preprocessing/normalization 2023-10-27T12:40:14,733 copying nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/lib/nnunetv2/preprocessing/normalization 2023-10-27T12:40:14,735 copying nnunetv2/preprocessing/normalization/__init__.py -> build/lib/nnunetv2/preprocessing/normalization 2023-10-27T12:40:14,736 copying nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/lib/nnunetv2/preprocessing/normalization 2023-10-27T12:40:14,738 creating build/lib/nnunetv2/preprocessing/preprocessors 2023-10-27T12:40:14,742 copying nnunetv2/preprocessing/preprocessors/__init__.py -> build/lib/nnunetv2/preprocessing/preprocessors 2023-10-27T12:40:14,743 copying nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/lib/nnunetv2/preprocessing/preprocessors 2023-10-27T12:40:14,747 creating build/lib/nnunetv2/preprocessing/resampling 2023-10-27T12:40:14,748 copying nnunetv2/preprocessing/resampling/__init__.py -> build/lib/nnunetv2/preprocessing/resampling 2023-10-27T12:40:14,749 copying nnunetv2/preprocessing/resampling/default_resampling.py -> build/lib/nnunetv2/preprocessing/resampling 2023-10-27T12:40:14,752 copying nnunetv2/preprocessing/resampling/utils.py -> build/lib/nnunetv2/preprocessing/resampling 2023-10-27T12:40:14,754 creating build/lib/nnunetv2/utilities/label_handling 2023-10-27T12:40:14,755 copying nnunetv2/utilities/label_handling/__init__.py -> build/lib/nnunetv2/utilities/label_handling 2023-10-27T12:40:14,757 copying nnunetv2/utilities/label_handling/label_handling.py -> build/lib/nnunetv2/utilities/label_handling 2023-10-27T12:40:14,759 creating build/lib/nnunetv2/utilities/plans_handling 2023-10-27T12:40:14,760 copying nnunetv2/utilities/plans_handling/plans_handler.py -> build/lib/nnunetv2/utilities/plans_handling 2023-10-27T12:40:14,763 copying nnunetv2/utilities/plans_handling/__init__.py -> build/lib/nnunetv2/utilities/plans_handling 2023-10-27T12:40:14,764 creating build/lib/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:14,765 copying nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:14,767 copying nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:14,768 copying nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:14,770 copying nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/lib/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:14,773 creating build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2023-10-27T12:40:14,774 copying nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2023-10-27T12:40:14,776 copying nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/lib/nnunetv2/experiment_planning/dataset_fingerprint 2023-10-27T12:40:14,779 creating build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2023-10-27T12:40:14,779 copying nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2023-10-27T12:40:14,781 copying nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/lib/nnunetv2/experiment_planning/plans_for_pretraining 2023-10-27T12:40:14,783 running egg_info 2023-10-27T12:40:14,789 writing nnunetv2.egg-info/PKG-INFO 2023-10-27T12:40:14,794 writing dependency_links to nnunetv2.egg-info/dependency_links.txt 2023-10-27T12:40:14,797 writing entry points to nnunetv2.egg-info/entry_points.txt 2023-10-27T12:40:14,799 writing requirements to nnunetv2.egg-info/requires.txt 2023-10-27T12:40:14,800 writing top-level names to nnunetv2.egg-info/top_level.txt 2023-10-27T12:40:14,827 reading manifest file 'nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:14,833 adding license file 'LICENSE' 2023-10-27T12:40:14,841 writing manifest file 'nnunetv2.egg-info/SOURCES.txt' 2023-10-27T12:40:14,873 installing to build/bdist.linux-armv7l/wheel 2023-10-27T12:40:14,874 running install 2023-10-27T12:40:14,897 running install_lib 2023-10-27T12:40:14,903 creating build/bdist.linux-armv7l 2023-10-27T12:40:14,903 creating build/bdist.linux-armv7l/wheel 2023-10-27T12:40:14,905 creating build/bdist.linux-armv7l/wheel/nnunetv2 2023-10-27T12:40:14,906 creating build/bdist.linux-armv7l/wheel/nnunetv2/training 2023-10-27T12:40:14,907 copying build/lib/nnunetv2/training/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training 2023-10-27T12:40:14,909 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2023-10-27T12:40:14,910 copying build/lib/nnunetv2/training/loss/compound_losses.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2023-10-27T12:40:14,913 copying build/lib/nnunetv2/training/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2023-10-27T12:40:14,914 copying build/lib/nnunetv2/training/loss/robust_ce_loss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2023-10-27T12:40:14,916 copying build/lib/nnunetv2/training/loss/deep_supervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2023-10-27T12:40:14,918 copying build/lib/nnunetv2/training/loss/dice.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/loss 2023-10-27T12:40:14,920 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2023-10-27T12:40:14,921 copying build/lib/nnunetv2/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2023-10-27T12:40:14,923 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,924 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,925 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,927 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,929 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,931 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,932 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,934 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/masking.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,936 copying build/lib/nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation/custom_transforms 2023-10-27T12:40:14,937 copying build/lib/nnunetv2/training/data_augmentation/compute_initial_patch_size.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/data_augmentation 2023-10-27T12:40:14,940 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,941 copying build/lib/nnunetv2/training/dataloading/data_loader_3d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,942 copying build/lib/nnunetv2/training/dataloading/base_data_loader.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,945 copying build/lib/nnunetv2/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,946 copying build/lib/nnunetv2/training/dataloading/nnunet_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,948 copying build/lib/nnunetv2/training/dataloading/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,950 copying build/lib/nnunetv2/training/dataloading/data_loader_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/dataloading 2023-10-27T12:40:14,953 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2023-10-27T12:40:14,954 copying build/lib/nnunetv2/training/logging/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2023-10-27T12:40:14,955 copying build/lib/nnunetv2/training/logging/nnunet_logger.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/logging 2023-10-27T12:40:14,958 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2023-10-27T12:40:14,959 copying build/lib/nnunetv2/training/nnUNetTrainer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2023-10-27T12:40:14,961 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2023-10-27T12:40:14,962 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2023-10-27T12:40:14,963 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2023-10-27T12:40:14,965 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/sampling 2023-10-27T12:40:14,967 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,968 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,970 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,972 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/benchmarking 2023-10-27T12:40:14,973 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants 2023-10-27T12:40:14,975 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,976 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,978 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,980 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,981 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/loss 2023-10-27T12:40:14,984 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,985 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,987 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,988 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/training_length 2023-10-27T12:40:14,991 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2023-10-27T12:40:14,992 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2023-10-27T12:40:14,993 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/lr_schedule 2023-10-27T12:40:14,995 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,996 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:14,999 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:15,001 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:15,002 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:15,005 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/data_augmentation 2023-10-27T12:40:15,007 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:15,008 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:15,009 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:15,011 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/optimizer 2023-10-27T12:40:15,013 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:15,015 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:15,016 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:15,018 copying build/lib/nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer/variants/network_architecture 2023-10-27T12:40:15,020 copying build/lib/nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/nnUNetTrainer 2023-10-27T12:40:15,024 creating build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2023-10-27T12:40:15,025 copying build/lib/nnunetv2/training/lr_scheduler/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2023-10-27T12:40:15,027 copying build/lib/nnunetv2/training/lr_scheduler/polylr.py -> build/bdist.linux-armv7l/wheel/nnunetv2/training/lr_scheduler 2023-10-27T12:40:15,029 copying build/lib/nnunetv2/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2023-10-27T12:40:15,030 creating build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2023-10-27T12:40:15,031 copying build/lib/nnunetv2/evaluation/accumulate_cv_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2023-10-27T12:40:15,033 copying build/lib/nnunetv2/evaluation/evaluate_predictions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2023-10-27T12:40:15,036 copying build/lib/nnunetv2/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2023-10-27T12:40:15,037 copying build/lib/nnunetv2/evaluation/find_best_configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2/evaluation 2023-10-27T12:40:15,040 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,041 copying build/lib/nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,043 copying build/lib/nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,045 copying build/lib/nnunetv2/dataset_conversion/Dataset115_EMIDEC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,047 copying build/lib/nnunetv2/dataset_conversion/generate_dataset_json.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,049 copying build/lib/nnunetv2/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,050 copying build/lib/nnunetv2/dataset_conversion/convert_MSD_dataset.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,056 copying build/lib/nnunetv2/dataset_conversion/Dataset137_BraTS21.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,058 copying build/lib/nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,060 copying build/lib/nnunetv2/dataset_conversion/Dataset114_MNMs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,062 copying build/lib/nnunetv2/dataset_conversion/Dataset220_KiTS2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,064 copying build/lib/nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,067 creating build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:15,067 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:15,069 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:15,071 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:15,073 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:15,075 copying build/lib/nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion/datasets_for_integration_tests 2023-10-27T12:40:15,077 copying build/lib/nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,079 copying build/lib/nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,081 copying build/lib/nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,083 copying build/lib/nnunetv2/dataset_conversion/Dataset027_ACDC.py -> build/bdist.linux-armv7l/wheel/nnunetv2/dataset_conversion 2023-10-27T12:40:15,085 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests 2023-10-27T12:40:15,086 copying build/lib/nnunetv2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests 2023-10-27T12:40:15,088 creating build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2023-10-27T12:40:15,089 copying build/lib/nnunetv2/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2023-10-27T12:40:15,091 copying build/lib/nnunetv2/tests/integration_tests/cleanup_integration_test.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2023-10-27T12:40:15,093 copying build/lib/nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2023-10-27T12:40:15,095 copying build/lib/nnunetv2/tests/integration_tests/add_lowres_and_cascade.py -> build/bdist.linux-armv7l/wheel/nnunetv2/tests/integration_tests 2023-10-27T12:40:15,097 creating build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2023-10-27T12:40:15,098 copying build/lib/nnunetv2/model_sharing/model_import.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2023-10-27T12:40:15,100 copying build/lib/nnunetv2/model_sharing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2023-10-27T12:40:15,101 copying build/lib/nnunetv2/model_sharing/entry_points.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2023-10-27T12:40:15,103 copying build/lib/nnunetv2/model_sharing/model_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2023-10-27T12:40:15,106 copying build/lib/nnunetv2/model_sharing/model_download.py -> build/bdist.linux-armv7l/wheel/nnunetv2/model_sharing 2023-10-27T12:40:15,108 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2023-10-27T12:40:15,109 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2023-10-27T12:40:15,110 copying build/lib/nnunetv2/batch_running/release_trainings/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings 2023-10-27T12:40:15,113 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:15,114 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:15,116 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:15,118 copying build/lib/nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/release_trainings/nnunetv2_v1 2023-10-27T12:40:15,120 creating build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:15,121 copying build/lib/nnunetv2/batch_running/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:15,123 copying build/lib/nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:15,125 copying build/lib/nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running/benchmarking 2023-10-27T12:40:15,127 copying build/lib/nnunetv2/batch_running/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2023-10-27T12:40:15,128 copying build/lib/nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2023-10-27T12:40:15,130 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2023-10-27T12:40:15,132 copying build/lib/nnunetv2/batch_running/collect_results_custom_Decathlon.py -> build/bdist.linux-armv7l/wheel/nnunetv2/batch_running 2023-10-27T12:40:15,135 creating build/bdist.linux-armv7l/wheel/nnunetv2/run 2023-10-27T12:40:15,136 copying build/lib/nnunetv2/run/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2023-10-27T12:40:15,137 copying build/lib/nnunetv2/run/run_training.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2023-10-27T12:40:15,140 copying build/lib/nnunetv2/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/nnunetv2/run 2023-10-27T12:40:15,141 copying build/lib/nnunetv2/paths.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2023-10-27T12:40:15,144 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2023-10-27T12:40:15,145 copying build/lib/nnunetv2/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing 2023-10-27T12:40:15,147 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2023-10-27T12:40:15,148 copying build/lib/nnunetv2/preprocessing/cropping/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2023-10-27T12:40:15,149 copying build/lib/nnunetv2/preprocessing/cropping/cropping.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/cropping 2023-10-27T12:40:15,151 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2023-10-27T12:40:15,152 copying build/lib/nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2023-10-27T12:40:15,154 copying build/lib/nnunetv2/preprocessing/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2023-10-27T12:40:15,156 copying build/lib/nnunetv2/preprocessing/normalization/default_normalization_schemes.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/normalization 2023-10-27T12:40:15,158 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2023-10-27T12:40:15,159 copying build/lib/nnunetv2/preprocessing/preprocessors/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2023-10-27T12:40:15,161 copying build/lib/nnunetv2/preprocessing/preprocessors/default_preprocessor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/preprocessors 2023-10-27T12:40:15,163 creating build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2023-10-27T12:40:15,164 copying build/lib/nnunetv2/preprocessing/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2023-10-27T12:40:15,166 copying build/lib/nnunetv2/preprocessing/resampling/default_resampling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2023-10-27T12:40:15,168 copying build/lib/nnunetv2/preprocessing/resampling/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/preprocessing/resampling 2023-10-27T12:40:15,170 copying build/lib/nnunetv2/configuration.py -> build/bdist.linux-armv7l/wheel/nnunetv2 2023-10-27T12:40:15,173 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,174 copying build/lib/nnunetv2/utilities/dataset_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,176 copying build/lib/nnunetv2/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,177 copying build/lib/nnunetv2/utilities/get_network_from_plans.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,179 copying build/lib/nnunetv2/utilities/collate_outputs.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,181 copying build/lib/nnunetv2/utilities/ddp_allgather.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,183 copying build/lib/nnunetv2/utilities/json_export.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,185 copying build/lib/nnunetv2/utilities/default_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,187 copying build/lib/nnunetv2/utilities/find_class_by_name.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,189 copying build/lib/nnunetv2/utilities/utils.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,191 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2023-10-27T12:40:15,192 copying build/lib/nnunetv2/utilities/label_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2023-10-27T12:40:15,194 copying build/lib/nnunetv2/utilities/label_handling/label_handling.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/label_handling 2023-10-27T12:40:15,196 copying build/lib/nnunetv2/utilities/overlay_plots.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,199 creating build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2023-10-27T12:40:15,200 copying build/lib/nnunetv2/utilities/plans_handling/plans_handler.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2023-10-27T12:40:15,202 copying build/lib/nnunetv2/utilities/plans_handling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities/plans_handling 2023-10-27T12:40:15,204 copying build/lib/nnunetv2/utilities/helpers.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,206 copying build/lib/nnunetv2/utilities/network_initialization.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,208 copying build/lib/nnunetv2/utilities/file_path_utilities.py -> build/bdist.linux-armv7l/wheel/nnunetv2/utilities 2023-10-27T12:40:15,210 creating build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2023-10-27T12:40:15,211 copying build/lib/nnunetv2/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2023-10-27T12:40:15,213 copying build/lib/nnunetv2/postprocessing/remove_connected_components.py -> build/bdist.linux-armv7l/wheel/nnunetv2/postprocessing 2023-10-27T12:40:15,218 creating build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,219 copying build/lib/nnunetv2/imageio/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,221 copying build/lib/nnunetv2/imageio/tif_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,223 copying build/lib/nnunetv2/imageio/nibabel_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,226 copying build/lib/nnunetv2/imageio/simpleitk_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,228 copying build/lib/nnunetv2/imageio/natural_image_reager_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,230 copying build/lib/nnunetv2/imageio/base_reader_writer.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,232 copying build/lib/nnunetv2/imageio/reader_writer_registry.py -> build/bdist.linux-armv7l/wheel/nnunetv2/imageio 2023-10-27T12:40:15,235 creating build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2023-10-27T12:40:15,236 copying build/lib/nnunetv2/ensembling/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2023-10-27T12:40:15,238 copying build/lib/nnunetv2/ensembling/ensemble.py -> build/bdist.linux-armv7l/wheel/nnunetv2/ensembling 2023-10-27T12:40:15,241 creating build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,242 copying build/lib/nnunetv2/inference/export_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,244 copying build/lib/nnunetv2/inference/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,246 copying build/lib/nnunetv2/inference/sliding_window_prediction.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,248 copying build/lib/nnunetv2/inference/data_iterators.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,251 copying build/lib/nnunetv2/inference/predict_from_raw_data.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,254 copying build/lib/nnunetv2/inference/examples.py -> build/bdist.linux-armv7l/wheel/nnunetv2/inference 2023-10-27T12:40:15,257 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2023-10-27T12:40:15,259 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:15,260 copying build/lib/nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:15,262 copying build/lib/nnunetv2/experiment_planning/experiment_planners/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:15,264 copying build/lib/nnunetv2/experiment_planning/experiment_planners/network_topology.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:15,265 copying build/lib/nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/experiment_planners 2023-10-27T12:40:15,268 copying build/lib/nnunetv2/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2023-10-27T12:40:15,270 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2023-10-27T12:40:15,271 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2023-10-27T12:40:15,273 copying build/lib/nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/dataset_fingerprint 2023-10-27T12:40:15,276 creating build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2023-10-27T12:40:15,277 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/__init__.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2023-10-27T12:40:15,278 copying build/lib/nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning/plans_for_pretraining 2023-10-27T12:40:15,280 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_api.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2023-10-27T12:40:15,283 copying build/lib/nnunetv2/experiment_planning/verify_dataset_integrity.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2023-10-27T12:40:15,285 copying build/lib/nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py -> build/bdist.linux-armv7l/wheel/nnunetv2/experiment_planning 2023-10-27T12:40:15,288 running install_egg_info 2023-10-27T12:40:15,293 Copying nnunetv2.egg-info to build/bdist.linux-armv7l/wheel/nnunetv2-2.2.1-py3.11.egg-info 2023-10-27T12:40:15,306 running install_scripts 2023-10-27T12:40:15,330 creating build/bdist.linux-armv7l/wheel/nnunetv2-2.2.1.dist-info/WHEEL 2023-10-27T12:40:15,333 creating '/tmp/pip-wheel-_yw3komt/.tmp-z4opatjb/nnunetv2-2.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-27T12:40:15,336 adding 'nnunetv2/__init__.py' 2023-10-27T12:40:15,337 adding 'nnunetv2/configuration.py' 2023-10-27T12:40:15,339 adding 'nnunetv2/paths.py' 2023-10-27T12:40:15,341 adding 'nnunetv2/batch_running/__init__.py' 2023-10-27T12:40:15,342 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon.py' 2023-10-27T12:40:15,344 adding 'nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py' 2023-10-27T12:40:15,345 adding 'nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py' 2023-10-27T12:40:15,347 adding 'nnunetv2/batch_running/benchmarking/__init__.py' 2023-10-27T12:40:15,349 adding 'nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py' 2023-10-27T12:40:15,350 adding 'nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py' 2023-10-27T12:40:15,352 adding 'nnunetv2/batch_running/release_trainings/__init__.py' 2023-10-27T12:40:15,353 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py' 2023-10-27T12:40:15,356 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py' 2023-10-27T12:40:15,358 adding 'nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py' 2023-10-27T12:40:15,360 adding 'nnunetv2/dataset_conversion/Dataset027_ACDC.py' 2023-10-27T12:40:15,362 adding 'nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py' 2023-10-27T12:40:15,363 adding 'nnunetv2/dataset_conversion/Dataset114_MNMs.py' 2023-10-27T12:40:15,365 adding 'nnunetv2/dataset_conversion/Dataset115_EMIDEC.py' 2023-10-27T12:40:15,366 adding 'nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py' 2023-10-27T12:40:15,367 adding 'nnunetv2/dataset_conversion/Dataset137_BraTS21.py' 2023-10-27T12:40:15,369 adding 'nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py' 2023-10-27T12:40:15,370 adding 'nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py' 2023-10-27T12:40:15,371 adding 'nnunetv2/dataset_conversion/Dataset220_KiTS2023.py' 2023-10-27T12:40:15,373 adding 'nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py' 2023-10-27T12:40:15,374 adding 'nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py' 2023-10-27T12:40:15,375 adding 'nnunetv2/dataset_conversion/__init__.py' 2023-10-27T12:40:15,376 adding 'nnunetv2/dataset_conversion/convert_MSD_dataset.py' 2023-10-27T12:40:15,378 adding 'nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py' 2023-10-27T12:40:15,379 adding 'nnunetv2/dataset_conversion/generate_dataset_json.py' 2023-10-27T12:40:15,381 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py' 2023-10-27T12:40:15,382 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py' 2023-10-27T12:40:15,384 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py' 2023-10-27T12:40:15,385 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py' 2023-10-27T12:40:15,386 adding 'nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py' 2023-10-27T12:40:15,388 adding 'nnunetv2/ensembling/__init__.py' 2023-10-27T12:40:15,390 adding 'nnunetv2/ensembling/ensemble.py' 2023-10-27T12:40:15,391 adding 'nnunetv2/evaluation/__init__.py' 2023-10-27T12:40:15,393 adding 'nnunetv2/evaluation/accumulate_cv_results.py' 2023-10-27T12:40:15,395 adding 'nnunetv2/evaluation/evaluate_predictions.py' 2023-10-27T12:40:15,397 adding 'nnunetv2/evaluation/find_best_configuration.py' 2023-10-27T12:40:15,399 adding 'nnunetv2/experiment_planning/__init__.py' 2023-10-27T12:40:15,401 adding 'nnunetv2/experiment_planning/plan_and_preprocess_api.py' 2023-10-27T12:40:15,403 adding 'nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py' 2023-10-27T12:40:15,405 adding 'nnunetv2/experiment_planning/verify_dataset_integrity.py' 2023-10-27T12:40:15,406 adding 'nnunetv2/experiment_planning/dataset_fingerprint/__init__.py' 2023-10-27T12:40:15,408 adding 'nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py' 2023-10-27T12:40:15,410 adding 'nnunetv2/experiment_planning/experiment_planners/__init__.py' 2023-10-27T12:40:15,413 adding 'nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py' 2023-10-27T12:40:15,415 adding 'nnunetv2/experiment_planning/experiment_planners/network_topology.py' 2023-10-27T12:40:15,416 adding 'nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py' 2023-10-27T12:40:15,418 adding 'nnunetv2/experiment_planning/plans_for_pretraining/__init__.py' 2023-10-27T12:40:15,420 adding 'nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py' 2023-10-27T12:40:15,421 adding 'nnunetv2/imageio/__init__.py' 2023-10-27T12:40:15,423 adding 'nnunetv2/imageio/base_reader_writer.py' 2023-10-27T12:40:15,424 adding 'nnunetv2/imageio/natural_image_reager_writer.py' 2023-10-27T12:40:15,426 adding 'nnunetv2/imageio/nibabel_reader_writer.py' 2023-10-27T12:40:15,428 adding 'nnunetv2/imageio/reader_writer_registry.py' 2023-10-27T12:40:15,429 adding 'nnunetv2/imageio/simpleitk_reader_writer.py' 2023-10-27T12:40:15,431 adding 'nnunetv2/imageio/tif_reader_writer.py' 2023-10-27T12:40:15,433 adding 'nnunetv2/inference/__init__.py' 2023-10-27T12:40:15,434 adding 'nnunetv2/inference/data_iterators.py' 2023-10-27T12:40:15,436 adding 'nnunetv2/inference/examples.py' 2023-10-27T12:40:15,437 adding 'nnunetv2/inference/export_prediction.py' 2023-10-27T12:40:15,442 adding 'nnunetv2/inference/predict_from_raw_data.py' 2023-10-27T12:40:15,444 adding 'nnunetv2/inference/sliding_window_prediction.py' 2023-10-27T12:40:15,446 adding 'nnunetv2/model_sharing/__init__.py' 2023-10-27T12:40:15,447 adding 'nnunetv2/model_sharing/entry_points.py' 2023-10-27T12:40:15,448 adding 'nnunetv2/model_sharing/model_download.py' 2023-10-27T12:40:15,450 adding 'nnunetv2/model_sharing/model_export.py' 2023-10-27T12:40:15,451 adding 'nnunetv2/model_sharing/model_import.py' 2023-10-27T12:40:15,452 adding 'nnunetv2/postprocessing/__init__.py' 2023-10-27T12:40:15,455 adding 'nnunetv2/postprocessing/remove_connected_components.py' 2023-10-27T12:40:15,456 adding 'nnunetv2/preprocessing/__init__.py' 2023-10-27T12:40:15,458 adding 'nnunetv2/preprocessing/cropping/__init__.py' 2023-10-27T12:40:15,459 adding 'nnunetv2/preprocessing/cropping/cropping.py' 2023-10-27T12:40:15,461 adding 'nnunetv2/preprocessing/normalization/__init__.py' 2023-10-27T12:40:15,462 adding 'nnunetv2/preprocessing/normalization/default_normalization_schemes.py' 2023-10-27T12:40:15,463 adding 'nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py' 2023-10-27T12:40:15,465 adding 'nnunetv2/preprocessing/preprocessors/__init__.py' 2023-10-27T12:40:15,467 adding 'nnunetv2/preprocessing/preprocessors/default_preprocessor.py' 2023-10-27T12:40:15,469 adding 'nnunetv2/preprocessing/resampling/__init__.py' 2023-10-27T12:40:15,470 adding 'nnunetv2/preprocessing/resampling/default_resampling.py' 2023-10-27T12:40:15,472 adding 'nnunetv2/preprocessing/resampling/utils.py' 2023-10-27T12:40:15,473 adding 'nnunetv2/run/__init__.py' 2023-10-27T12:40:15,475 adding 'nnunetv2/run/load_pretrained_weights.py' 2023-10-27T12:40:15,477 adding 'nnunetv2/run/run_training.py' 2023-10-27T12:40:15,479 adding 'nnunetv2/tests/__init__.py' 2023-10-27T12:40:15,480 adding 'nnunetv2/tests/integration_tests/__init__.py' 2023-10-27T12:40:15,481 adding 'nnunetv2/tests/integration_tests/add_lowres_and_cascade.py' 2023-10-27T12:40:15,483 adding 'nnunetv2/tests/integration_tests/cleanup_integration_test.py' 2023-10-27T12:40:15,484 adding 'nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py' 2023-10-27T12:40:15,486 adding 'nnunetv2/training/__init__.py' 2023-10-27T12:40:15,488 adding 'nnunetv2/training/data_augmentation/__init__.py' 2023-10-27T12:40:15,489 adding 'nnunetv2/training/data_augmentation/compute_initial_patch_size.py' 2023-10-27T12:40:15,491 adding 'nnunetv2/training/data_augmentation/custom_transforms/__init__.py' 2023-10-27T12:40:15,492 adding 'nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py' 2023-10-27T12:40:15,494 adding 'nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py' 2023-10-27T12:40:15,495 adding 'nnunetv2/training/data_augmentation/custom_transforms/limited_length_multithreaded_augmenter.py' 2023-10-27T12:40:15,496 adding 'nnunetv2/training/data_augmentation/custom_transforms/manipulating_data_dict.py' 2023-10-27T12:40:15,497 adding 'nnunetv2/training/data_augmentation/custom_transforms/masking.py' 2023-10-27T12:40:15,498 adding 'nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py' 2023-10-27T12:40:15,500 adding 'nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py' 2023-10-27T12:40:15,502 adding 'nnunetv2/training/dataloading/__init__.py' 2023-10-27T12:40:15,503 adding 'nnunetv2/training/dataloading/base_data_loader.py' 2023-10-27T12:40:15,505 adding 'nnunetv2/training/dataloading/data_loader_2d.py' 2023-10-27T12:40:15,506 adding 'nnunetv2/training/dataloading/data_loader_3d.py' 2023-10-27T12:40:15,508 adding 'nnunetv2/training/dataloading/nnunet_dataset.py' 2023-10-27T12:40:15,509 adding 'nnunetv2/training/dataloading/utils.py' 2023-10-27T12:40:15,511 adding 'nnunetv2/training/logging/__init__.py' 2023-10-27T12:40:15,512 adding 'nnunetv2/training/logging/nnunet_logger.py' 2023-10-27T12:40:15,514 adding 'nnunetv2/training/loss/__init__.py' 2023-10-27T12:40:15,515 adding 'nnunetv2/training/loss/compound_losses.py' 2023-10-27T12:40:15,516 adding 'nnunetv2/training/loss/deep_supervision.py' 2023-10-27T12:40:15,518 adding 'nnunetv2/training/loss/dice.py' 2023-10-27T12:40:15,519 adding 'nnunetv2/training/loss/robust_ce_loss.py' 2023-10-27T12:40:15,521 adding 'nnunetv2/training/lr_scheduler/__init__.py' 2023-10-27T12:40:15,522 adding 'nnunetv2/training/lr_scheduler/polylr.py' 2023-10-27T12:40:15,523 adding 'nnunetv2/training/nnUNetTrainer/__init__.py' 2023-10-27T12:40:15,531 adding 'nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py' 2023-10-27T12:40:15,533 adding 'nnunetv2/training/nnUNetTrainer/variants/__init__.py' 2023-10-27T12:40:15,535 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py' 2023-10-27T12:40:15,536 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py' 2023-10-27T12:40:15,537 adding 'nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py' 2023-10-27T12:40:15,539 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py' 2023-10-27T12:40:15,541 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py' 2023-10-27T12:40:15,543 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py' 2023-10-27T12:40:15,544 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py' 2023-10-27T12:40:15,545 adding 'nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py' 2023-10-27T12:40:15,547 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py' 2023-10-27T12:40:15,548 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py' 2023-10-27T12:40:15,550 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py' 2023-10-27T12:40:15,551 adding 'nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py' 2023-10-27T12:40:15,553 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py' 2023-10-27T12:40:15,554 adding 'nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py' 2023-10-27T12:40:15,556 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py' 2023-10-27T12:40:15,557 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py' 2023-10-27T12:40:15,559 adding 'nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py' 2023-10-27T12:40:15,561 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py' 2023-10-27T12:40:15,562 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py' 2023-10-27T12:40:15,563 adding 'nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py' 2023-10-27T12:40:15,565 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py' 2023-10-27T12:40:15,566 adding 'nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py' 2023-10-27T12:40:15,568 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py' 2023-10-27T12:40:15,569 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py' 2023-10-27T12:40:15,570 adding 'nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py' 2023-10-27T12:40:15,572 adding 'nnunetv2/utilities/__init__.py' 2023-10-27T12:40:15,574 adding 'nnunetv2/utilities/collate_outputs.py' 2023-10-27T12:40:15,575 adding 'nnunetv2/utilities/dataset_name_id_conversion.py' 2023-10-27T12:40:15,577 adding 'nnunetv2/utilities/ddp_allgather.py' 2023-10-27T12:40:15,578 adding 'nnunetv2/utilities/default_n_proc_DA.py' 2023-10-27T12:40:15,579 adding 'nnunetv2/utilities/file_path_utilities.py' 2023-10-27T12:40:15,580 adding 'nnunetv2/utilities/find_class_by_name.py' 2023-10-27T12:40:15,582 adding 'nnunetv2/utilities/get_network_from_plans.py' 2023-10-27T12:40:15,583 adding 'nnunetv2/utilities/helpers.py' 2023-10-27T12:40:15,584 adding 'nnunetv2/utilities/json_export.py' 2023-10-27T12:40:15,585 adding 'nnunetv2/utilities/network_initialization.py' 2023-10-27T12:40:15,587 adding 'nnunetv2/utilities/overlay_plots.py' 2023-10-27T12:40:15,588 adding 'nnunetv2/utilities/utils.py' 2023-10-27T12:40:15,590 adding 'nnunetv2/utilities/label_handling/__init__.py' 2023-10-27T12:40:15,592 adding 'nnunetv2/utilities/label_handling/label_handling.py' 2023-10-27T12:40:15,593 adding 'nnunetv2/utilities/plans_handling/__init__.py' 2023-10-27T12:40:15,595 adding 'nnunetv2/utilities/plans_handling/plans_handler.py' 2023-10-27T12:40:15,598 adding 'nnunetv2-2.2.1.dist-info/LICENSE' 2023-10-27T12:40:15,602 adding 'nnunetv2-2.2.1.dist-info/METADATA' 2023-10-27T12:40:15,604 adding 'nnunetv2-2.2.1.dist-info/WHEEL' 2023-10-27T12:40:15,605 adding 'nnunetv2-2.2.1.dist-info/entry_points.txt' 2023-10-27T12:40:15,606 adding 'nnunetv2-2.2.1.dist-info/top_level.txt' 2023-10-27T12:40:15,609 adding 'nnunetv2-2.2.1.dist-info/RECORD' 2023-10-27T12:40:15,614 removing build/bdist.linux-armv7l/wheel 2023-10-27T12:40:15,789 Building wheel for nnunetv2 (pyproject.toml): finished with status 'done' 2023-10-27T12:40:15,799 Created wheel for nnunetv2: filename=nnunetv2-2.2.1-py3-none-any.whl size=237457 sha256=382d4f06ffe8d21ba4a15b6b278570a58b5185ddeec2b4840185f5fe6bc1faad 2023-10-27T12:40:15,800 Stored in directory: /tmp/pip-ephem-wheel-cache-nv746jh0/wheels/1a/86/74/6458fff33248addd98aed21327d80d454cf1c5ff45f1e8a5e5 2023-10-27T12:40:15,824 Successfully built nnunetv2 2023-10-27T12:40:15,835 Removed build tracker: '/tmp/pip-build-tracker-59di4i3y'