2023-10-28T20:01:25,954 Created temporary directory: /tmp/pip-build-tracker-z3jn5wb7 2023-10-28T20:01:25,956 Initialized build tracking at /tmp/pip-build-tracker-z3jn5wb7 2023-10-28T20:01:25,956 Created build tracker: /tmp/pip-build-tracker-z3jn5wb7 2023-10-28T20:01:25,956 Entered build tracker: /tmp/pip-build-tracker-z3jn5wb7 2023-10-28T20:01:25,956 Created temporary directory: /tmp/pip-wheel-ai27ydx4 2023-10-28T20:01:25,961 Created temporary directory: /tmp/pip-ephem-wheel-cache-y9h3aufb 2023-10-28T20:01:25,984 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-28T20:01:25,988 2 location(s) to search for versions of dega: 2023-10-28T20:01:25,988 * https://pypi.org/simple/dega/ 2023-10-28T20:01:25,988 * https://www.piwheels.org/simple/dega/ 2023-10-28T20:01:25,989 Fetching project page and analyzing links: https://pypi.org/simple/dega/ 2023-10-28T20:01:25,989 Getting page https://pypi.org/simple/dega/ 2023-10-28T20:01:25,991 Found index url https://pypi.org/simple/ 2023-10-28T20:01:26,042 Fetched page https://pypi.org/simple/dega/ as application/vnd.pypi.simple.v1+json 2023-10-28T20:01:26,043 Found link https://files.pythonhosted.org/packages/49/2f/3c450d945d51bd87cf49ef35ae5b7a20861932dbec95fa271a60f4955126/DEGA-0.1.0.tar.gz (from https://pypi.org/simple/dega/) (requires-python:>=3.8), version: 0.1.0 2023-10-28T20:01:26,044 Found link https://files.pythonhosted.org/packages/13/0b/eb063c3216c3402087cba94d05a65a659a8319148d65242e9ba81dc8cc16/DEGA-0.1.1.tar.gz (from https://pypi.org/simple/dega/) (requires-python:>=3.8), version: 0.1.1 2023-10-28T20:01:26,045 Found link https://files.pythonhosted.org/packages/61/33/97b21020d5e1478911bce462824afea4d161abb28337b2490c4883b5971e/DEGA-0.2.0.tar.gz (from https://pypi.org/simple/dega/) (requires-python:>=3.8), version: 0.2.0 2023-10-28T20:01:26,045 Found link https://files.pythonhosted.org/packages/27/42/4e7ce54dd6f06b091becf4e8f08614a5255ea93e246badbe428c495f7c2f/DEGA-0.2.1.tar.gz (from https://pypi.org/simple/dega/) (requires-python:>=3.8), version: 0.2.1 2023-10-28T20:01:26,046 Fetching project page and analyzing links: https://www.piwheels.org/simple/dega/ 2023-10-28T20:01:26,046 Getting page https://www.piwheels.org/simple/dega/ 2023-10-28T20:01:26,047 Found index url https://www.piwheels.org/simple/ 2023-10-28T20:01:26,112 Fetched page https://www.piwheels.org/simple/dega/ as text/html 2023-10-28T20:01:26,116 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.2.1-cp311-cp311-linux_armv7l.whl#sha256=32b86b46702c27a02d5f301a2687071642906c3c6862efec17dd83247343e4b3 (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,116 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.2.1-cp311-cp311-linux_armv6l.whl#sha256=32b86b46702c27a02d5f301a2687071642906c3c6862efec17dd83247343e4b3 (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,116 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=49b77eb90fc056b2174a6f63823451f2cf92eb7275a949644f0e10c0ef4ec0d4 (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,117 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=49b77eb90fc056b2174a6f63823451f2cf92eb7275a949644f0e10c0ef4ec0d4 (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,117 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.2.0-cp311-cp311-linux_armv7l.whl#sha256=0c1b31d6d238189230e2e94c484665d1662587a893e6f62cc7c52fc7ac39084f (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,117 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.2.0-cp311-cp311-linux_armv6l.whl#sha256=0c1b31d6d238189230e2e94c484665d1662587a893e6f62cc7c52fc7ac39084f (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,117 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=6d19f8ef3fbccbddb20f4bd92886b18c2454295092460eb1af32acb7ad43ae3a (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,117 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=6d19f8ef3fbccbddb20f4bd92886b18c2454295092460eb1af32acb7ad43ae3a (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,117 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.1.0-cp39-cp39-linux_armv7l.whl#sha256=dcd87bc3cb799a959d3e16c571f4c5d65f392971fc680e9005acb4161fe52dd9 (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,118 Skipping link: No binaries permitted for dega: https://www.piwheels.org/simple/dega/DEGA-0.1.0-cp39-cp39-linux_armv6l.whl#sha256=dcd87bc3cb799a959d3e16c571f4c5d65f392971fc680e9005acb4161fe52dd9 (from https://www.piwheels.org/simple/dega/) (requires-python:>=3.8) 2023-10-28T20:01:26,118 Skipping link: not a file: https://www.piwheels.org/simple/dega/ 2023-10-28T20:01:26,118 Skipping link: not a file: https://pypi.org/simple/dega/ 2023-10-28T20:01:26,136 Given no hashes to check 1 links for project 'dega': discarding no candidates 2023-10-28T20:01:26,153 Collecting dega==0.2.1 2023-10-28T20:01:26,155 Created temporary directory: /tmp/pip-unpack-1n_31lu7 2023-10-28T20:01:26,215 Downloading DEGA-0.2.1.tar.gz (585 kB) 2023-10-28T20:01:26,500 Added dega==0.2.1 from https://files.pythonhosted.org/packages/27/42/4e7ce54dd6f06b091becf4e8f08614a5255ea93e246badbe428c495f7c2f/DEGA-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-z3jn5wb7' 2023-10-28T20:01:26,508 Created temporary directory: /tmp/pip-build-env-sqoykdez 2023-10-28T20:01:26,518 Installing build dependencies: started 2023-10-28T20:01:26,519 Running command pip subprocess to install build dependencies 2023-10-28T20:01:27,675 Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-10-28T20:01:28,216 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-28T20:01:29,636 Collecting setuptools 2023-10-28T20:01:29,653 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-10-28T20:01:29,894 Collecting wheel 2023-10-28T20:01:29,909 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB) 2023-10-28T20:01:31,068 Collecting Cython 2023-10-28T20:01:31,086 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.4-cp39-cp39-linux_armv7l.whl (10.7 MB) 2023-10-28T20:01:31,603 Collecting pythran 2023-10-28T20:01:31,617 Downloading https://www.piwheels.org/simple/pythran/pythran-0.14.0-py3-none-any.whl (4.3 MB) 2023-10-28T20:01:32,331 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 6.0 MB/s eta 0:00:00 2023-10-28T20:01:33,167 Collecting scipy 2023-10-28T20:01:33,198 Using cached https://www.piwheels.org/simple/scipy/scipy-1.11.3-cp39-cp39-linux_armv7l.whl (66.0 MB) 2023-10-28T20:01:39,552 Collecting numpy 2023-10-28T20:01:39,570 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.1-cp39-cp39-linux_armv7l.whl (19.4 MB) 2023-10-28T20:01:40,369 Collecting ply>=3.4 (from pythran) 2023-10-28T20:01:40,385 Downloading https://www.piwheels.org/simple/ply/ply-3.11-py2.py3-none-any.whl (49 kB) 2023-10-28T20:01:40,404 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.6/49.6 kB 3.8 MB/s eta 0:00:00 2023-10-28T20:01:40,521 Collecting gast~=0.5.0 (from pythran) 2023-10-28T20:01:40,532 Downloading https://www.piwheels.org/simple/gast/gast-0.5.4-py3-none-any.whl (19 kB) 2023-10-28T20:01:40,709 Collecting beniget~=0.4.0 (from pythran) 2023-10-28T20:01:40,722 Downloading https://www.piwheels.org/simple/beniget/beniget-0.4.1-py3-none-any.whl (9.5 kB) 2023-10-28T20:01:43,011 Installing collected packages: ply, wheel, setuptools, numpy, gast, Cython, scipy, beniget, pythran 2023-10-28T20:01:43,368 Creating /tmp/pip-build-env-sqoykdez/overlay/bin 2023-10-28T20:01:43,370 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/wheel to 755 2023-10-28T20:01:53,028 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/f2py to 755 2023-10-28T20:01:56,558 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/cygdb to 755 2023-10-28T20:01:56,560 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/cython to 755 2023-10-28T20:01:56,563 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/cythonize to 755 2023-10-28T20:02:17,511 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/pythran to 755 2023-10-28T20:02:17,514 changing mode of /tmp/pip-build-env-sqoykdez/overlay/bin/pythran-config to 755 2023-10-28T20:02:17,608 Successfully installed Cython-3.0.4 beniget-0.4.1 gast-0.5.4 numpy-1.26.1 ply-3.11 pythran-0.14.0 scipy-1.11.3 setuptools-68.2.2 wheel-0.41.2 2023-10-28T20:02:17,795 WARNING: There was an error checking the latest version of pip. 2023-10-28T20:02:18,291 Installing build dependencies: finished with status 'done' 2023-10-28T20:02:18,295 Getting requirements to build wheel: started 2023-10-28T20:02:18,296 Running command Getting requirements to build wheel 2023-10-28T20:02:32,224 Compiling DEGA/cython/estimateDispersion.pyx because it depends on /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/scipy/special/cython_special.pxd. 2023-10-28T20:02:32,224 Compiling DEGA/cython/negativeBinomialGLM.pyx because it depends on /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-10-28T20:02:32,225 [1/2] Cythonizing DEGA/cython/estimateDispersion.pyx 2023-10-28T20:02:32,225 [2/2] Cythonizing DEGA/cython/negativeBinomialGLM.pyx 2023-10-28T20:02:32,303 /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-10-28T20:02:32,304 corresp(dist, value, root_dir) 2023-10-28T20:02:32,412 running egg_info 2023-10-28T20:02:32,419 writing DEGA.egg-info/PKG-INFO 2023-10-28T20:02:32,424 writing dependency_links to DEGA.egg-info/dependency_links.txt 2023-10-28T20:02:32,426 writing requirements to DEGA.egg-info/requires.txt 2023-10-28T20:02:32,428 writing top-level names to DEGA.egg-info/top_level.txt 2023-10-28T20:02:32,452 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,452 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,452 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,452 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,452 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,453 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,453 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,453 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,453 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,453 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:32,458 reading manifest file 'DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:32,460 reading manifest template 'MANIFEST.in' 2023-10-28T20:02:32,467 warning: no previously-included files found matching 'DEGA/cython/setup.py' 2023-10-28T20:02:32,467 adding license file 'LICENSE' 2023-10-28T20:02:32,470 writing manifest file 'DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:33,532 Getting requirements to build wheel: finished with status 'done' 2023-10-28T20:02:33,546 Created temporary directory: /tmp/pip-modern-metadata-b1ohox34 2023-10-28T20:02:33,549 Preparing metadata (pyproject.toml): started 2023-10-28T20:02:33,550 Running command Preparing metadata (pyproject.toml) 2023-10-28T20:02:35,800 /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-10-28T20:02:35,801 corresp(dist, value, root_dir) 2023-10-28T20:02:35,904 running dist_info 2023-10-28T20:02:35,911 creating /tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info 2023-10-28T20:02:35,918 writing /tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/PKG-INFO 2023-10-28T20:02:35,923 writing dependency_links to /tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/dependency_links.txt 2023-10-28T20:02:35,926 writing requirements to /tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/requires.txt 2023-10-28T20:02:35,927 writing top-level names to /tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/top_level.txt 2023-10-28T20:02:35,928 writing manifest file '/tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:35,950 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,950 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,950 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,950 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,950 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,951 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,951 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,951 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,951 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,951 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:35,956 reading manifest file '/tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:35,958 reading manifest template 'MANIFEST.in' 2023-10-28T20:02:35,965 warning: no previously-included files found matching 'DEGA/cython/setup.py' 2023-10-28T20:02:35,966 adding license file 'LICENSE' 2023-10-28T20:02:35,968 writing manifest file '/tmp/pip-modern-metadata-b1ohox34/DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:35,969 creating '/tmp/pip-modern-metadata-b1ohox34/DEGA-0.2.1.dist-info' 2023-10-28T20:02:36,197 Preparing metadata (pyproject.toml): finished with status 'done' 2023-10-28T20:02:36,207 Source in /tmp/pip-wheel-ai27ydx4/dega_47b27498d4a84a279968af0c3b8af8b3 has version 0.2.1, which satisfies requirement dega==0.2.1 from https://files.pythonhosted.org/packages/27/42/4e7ce54dd6f06b091becf4e8f08614a5255ea93e246badbe428c495f7c2f/DEGA-0.2.1.tar.gz 2023-10-28T20:02:36,208 Removed dega==0.2.1 from https://files.pythonhosted.org/packages/27/42/4e7ce54dd6f06b091becf4e8f08614a5255ea93e246badbe428c495f7c2f/DEGA-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-z3jn5wb7' 2023-10-28T20:02:36,218 Created temporary directory: /tmp/pip-unpack-n543njot 2023-10-28T20:02:36,219 Created temporary directory: /tmp/pip-unpack-13_ge0eq 2023-10-28T20:02:36,240 Building wheels for collected packages: dega 2023-10-28T20:02:36,244 Created temporary directory: /tmp/pip-wheel-ws5ic13a 2023-10-28T20:02:36,245 Destination directory: /tmp/pip-wheel-ws5ic13a 2023-10-28T20:02:36,247 Building wheel for dega (pyproject.toml): started 2023-10-28T20:02:36,248 Running command Building wheel for dega (pyproject.toml) 2023-10-28T20:02:38,364 /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-10-28T20:02:38,365 corresp(dist, value, root_dir) 2023-10-28T20:02:38,462 running bdist_wheel 2023-10-28T20:02:38,490 running build 2023-10-28T20:02:38,491 running build_py 2023-10-28T20:02:38,498 creating build 2023-10-28T20:02:38,498 creating build/lib.linux-armv7l-cpython-39 2023-10-28T20:02:38,499 creating build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,500 copying DEGA/countsTranformers.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,502 copying DEGA/utils.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,504 copying DEGA/refit.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,506 copying DEGA/SIDE.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,509 copying DEGA/core.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,512 copying DEGA/plots.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,514 copying DEGA/statisticalTests.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,517 copying DEGA/__init__.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,518 copying DEGA/logger.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,520 copying DEGA/dispersions.py -> build/lib.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,522 running egg_info 2023-10-28T20:02:38,529 writing DEGA.egg-info/PKG-INFO 2023-10-28T20:02:38,533 writing dependency_links to DEGA.egg-info/dependency_links.txt 2023-10-28T20:02:38,535 writing requirements to DEGA.egg-info/requires.txt 2023-10-28T20:02:38,536 writing top-level names to DEGA.egg-info/top_level.txt 2023-10-28T20:02:38,541 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,541 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,541 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,542 dependency /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-10-28T20:02:38,548 reading manifest file 'DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:38,550 reading manifest template 'MANIFEST.in' 2023-10-28T20:02:38,557 warning: no previously-included files found matching 'DEGA/cython/setup.py' 2023-10-28T20:02:38,558 adding license file 'LICENSE' 2023-10-28T20:02:38,560 writing manifest file 'DEGA.egg-info/SOURCES.txt' 2023-10-28T20:02:38,562 creating build/lib.linux-armv7l-cpython-39/DEGA/cython 2023-10-28T20:02:38,563 copying DEGA/cython/estimateDispersion.cpp -> build/lib.linux-armv7l-cpython-39/DEGA/cython 2023-10-28T20:02:38,619 copying DEGA/cython/estimateDispersion.pyx -> build/lib.linux-armv7l-cpython-39/DEGA/cython 2023-10-28T20:02:38,622 copying DEGA/cython/negativeBinomialGLM.cpp -> build/lib.linux-armv7l-cpython-39/DEGA/cython 2023-10-28T20:02:38,652 copying DEGA/cython/negativeBinomialGLM.pyx -> build/lib.linux-armv7l-cpython-39/DEGA/cython 2023-10-28T20:02:38,655 running build_ext 2023-10-28T20:02:38,658 building 'DEGA.cython.estimateDispersion' extension 2023-10-28T20:02:38,664 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-28T20:02:38,666 creating build/temp.linux-armv7l-cpython-39 2023-10-28T20:02:38,666 creating build/temp.linux-armv7l-cpython-39/DEGA 2023-10-28T20:02:38,667 creating build/temp.linux-armv7l-cpython-39/DEGA/cython 2023-10-28T20:02:38,668 INFO: compile options: '-DENABLE_PYTHON_MODULE -D__PYTHRAN__=3 -DPYTHRAN_BLAS_BLAS -I/tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran -I/tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/python3.9 -c' 2023-10-28T20:02:38,668 extra options: '-std=c++11 -fno-math-errno -fno-wrapv -Wno-unused-function -Wno-int-in-bool-context -Wno-unknown-warning-option' 2023-10-28T20:02:38,669 INFO: arm-linux-gnueabihf-gcc: DEGA/cython/estimateDispersion.cpp 2023-10-28T20:02:39,071 In file included from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-28T20:02:39,071 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-28T20:02:39,071 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-28T20:02:39,071 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/python/core.hpp:19, 2023-10-28T20:02:39,071 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/include/types/int.hpp:19, 2023-10-28T20:02:39,071 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/types/int.hpp:5, 2023-10-28T20:02:39,072 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/core.hpp:44, 2023-10-28T20:02:39,072 from DEGA/cython/estimateDispersion.cpp:1213: 2023-10-28T20:02:39,072 /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-28T20:02:39,072 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-28T20:02:39,072 | ^~~~~~~ 2023-10-28T20:04:26,743 cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics 2023-10-28T20:04:33,575 INFO: arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/DEGA/cython/estimateDispersion.o -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lblas -lblas -o build/lib.linux-armv7l-cpython-39/DEGA/cython/estimateDispersion.cpython-39-arm-linux-gnueabihf.so -fvisibility=hidden -Wl,-strip-all 2023-10-28T20:04:33,889 building 'DEGA.cython.negativeBinomialGLM' extension 2023-10-28T20:04:33,889 INFO: C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC 2023-10-28T20:04:33,889 INFO: compile options: '-DENABLE_PYTHON_MODULE -D__PYTHRAN__=3 -DPYTHRAN_BLAS_BLAS -I/tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran -I/tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/python3.9 -c' 2023-10-28T20:04:33,889 extra options: '-std=c++11 -fno-math-errno -fno-wrapv -Wno-unused-function -Wno-int-in-bool-context -Wno-unknown-warning-option' 2023-10-28T20:04:33,890 INFO: arm-linux-gnueabihf-gcc: DEGA/cython/negativeBinomialGLM.cpp 2023-10-28T20:04:34,289 In file included from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-10-28T20:04:34,289 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-10-28T20:04:34,289 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-10-28T20:04:34,290 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/python/core.hpp:19, 2023-10-28T20:04:34,290 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/include/types/int.hpp:19, 2023-10-28T20:04:34,290 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/types/int.hpp:5, 2023-10-28T20:04:34,290 from /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/pythran/pythonic/core.hpp:44, 2023-10-28T20:04:34,290 from DEGA/cython/negativeBinomialGLM.cpp:1213: 2023-10-28T20:04:34,290 /tmp/pip-build-env-sqoykdez/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-10-28T20:04:34,290 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-10-28T20:04:34,290 | ^~~~~~~ 2023-10-28T20:05:42,312 cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics 2023-10-28T20:05:45,605 INFO: arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/DEGA/cython/negativeBinomialGLM.o -L/usr/lib/arm-linux-gnueabihf -L/usr/lib -lblas -lblas -o build/lib.linux-armv7l-cpython-39/DEGA/cython/negativeBinomialGLM.cpython-39-arm-linux-gnueabihf.so -fvisibility=hidden -Wl,-strip-all 2023-10-28T20:05:45,902 installing to build/bdist.linux-armv7l/wheel 2023-10-28T20:05:45,902 running install 2023-10-28T20:05:45,928 running install_lib 2023-10-28T20:05:45,935 creating build/bdist.linux-armv7l 2023-10-28T20:05:45,935 creating build/bdist.linux-armv7l/wheel 2023-10-28T20:05:45,937 creating build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:45,938 copying build/lib.linux-armv7l-cpython-39/DEGA/countsTranformers.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:45,940 copying build/lib.linux-armv7l-cpython-39/DEGA/utils.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:45,942 copying build/lib.linux-armv7l-cpython-39/DEGA/refit.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:45,944 copying build/lib.linux-armv7l-cpython-39/DEGA/SIDE.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:45,948 creating build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:45,948 copying build/lib.linux-armv7l-cpython-39/DEGA/cython/negativeBinomialGLM.pyx -> build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:45,951 copying build/lib.linux-armv7l-cpython-39/DEGA/cython/negativeBinomialGLM.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:45,959 copying build/lib.linux-armv7l-cpython-39/DEGA/cython/estimateDispersion.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:45,972 copying build/lib.linux-armv7l-cpython-39/DEGA/cython/estimateDispersion.pyx -> build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:45,974 copying build/lib.linux-armv7l-cpython-39/DEGA/cython/negativeBinomialGLM.cpp -> build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:46,019 copying build/lib.linux-armv7l-cpython-39/DEGA/cython/estimateDispersion.cpp -> build/bdist.linux-armv7l/wheel/DEGA/cython 2023-10-28T20:05:46,082 copying build/lib.linux-armv7l-cpython-39/DEGA/core.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:46,085 copying build/lib.linux-armv7l-cpython-39/DEGA/plots.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:46,088 copying build/lib.linux-armv7l-cpython-39/DEGA/statisticalTests.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:46,090 copying build/lib.linux-armv7l-cpython-39/DEGA/__init__.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:46,091 copying build/lib.linux-armv7l-cpython-39/DEGA/logger.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:46,093 copying build/lib.linux-armv7l-cpython-39/DEGA/dispersions.py -> build/bdist.linux-armv7l/wheel/DEGA 2023-10-28T20:05:46,095 running install_egg_info 2023-10-28T20:05:46,102 Copying DEGA.egg-info to build/bdist.linux-armv7l/wheel/DEGA-0.2.1-py3.9.egg-info 2023-10-28T20:05:46,112 running install_scripts 2023-10-28T20:05:46,163 creating build/bdist.linux-armv7l/wheel/DEGA-0.2.1.dist-info/WHEEL 2023-10-28T20:05:46,166 creating '/tmp/pip-wheel-ws5ic13a/.tmp-hfm2u9ck/DEGA-0.2.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-28T20:05:46,170 adding 'DEGA/SIDE.py' 2023-10-28T20:05:46,172 adding 'DEGA/__init__.py' 2023-10-28T20:05:46,179 adding 'DEGA/core.py' 2023-10-28T20:05:46,181 adding 'DEGA/countsTranformers.py' 2023-10-28T20:05:46,184 adding 'DEGA/dispersions.py' 2023-10-28T20:05:46,185 adding 'DEGA/logger.py' 2023-10-28T20:05:46,188 adding 'DEGA/plots.py' 2023-10-28T20:05:46,190 adding 'DEGA/refit.py' 2023-10-28T20:05:46,192 adding 'DEGA/statisticalTests.py' 2023-10-28T20:05:46,193 adding 'DEGA/utils.py' 2023-10-28T20:05:46,381 adding 'DEGA/cython/estimateDispersion.cpp' 2023-10-28T20:05:46,542 adding 'DEGA/cython/estimateDispersion.cpython-39-arm-linux-gnueabihf.so' 2023-10-28T20:05:46,549 adding 'DEGA/cython/estimateDispersion.pyx' 2023-10-28T20:05:46,683 adding 'DEGA/cython/negativeBinomialGLM.cpp' 2023-10-28T20:05:46,784 adding 'DEGA/cython/negativeBinomialGLM.cpython-39-arm-linux-gnueabihf.so' 2023-10-28T20:05:46,790 adding 'DEGA/cython/negativeBinomialGLM.pyx' 2023-10-28T20:05:46,797 adding 'DEGA-0.2.1.dist-info/LICENSE' 2023-10-28T20:05:46,804 adding 'DEGA-0.2.1.dist-info/METADATA' 2023-10-28T20:05:46,805 adding 'DEGA-0.2.1.dist-info/WHEEL' 2023-10-28T20:05:46,806 adding 'DEGA-0.2.1.dist-info/top_level.txt' 2023-10-28T20:05:46,807 adding 'DEGA-0.2.1.dist-info/RECORD' 2023-10-28T20:05:46,827 removing build/bdist.linux-armv7l/wheel 2023-10-28T20:05:47,020 Building wheel for dega (pyproject.toml): finished with status 'done' 2023-10-28T20:05:47,059 Created wheel for dega: filename=DEGA-0.2.1-cp39-cp39-linux_armv7l.whl size=1070128 sha256=9a54cd608f044762e094def16f7230753bd21e04195a2826d75ddf7895639b52 2023-10-28T20:05:47,060 Stored in directory: /tmp/pip-ephem-wheel-cache-y9h3aufb/wheels/77/92/3f/f3033793d5c228012e776ff1d0215fa0a4a0c5e48660e63fa1 2023-10-28T20:05:47,078 Successfully built dega 2023-10-28T20:05:47,107 Removed build tracker: '/tmp/pip-build-tracker-z3jn5wb7'