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https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.22-py3-none-any.whl#sha256=8bf5e9baf62a7cde4550e9078fe809244e28a8b7560e1144656e14c2103c5cb2 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,875 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.21-py3-none-any.whl#sha256=7c4986f1a54c6b002975645d8c2ed677acdb495a82681db08a454079d878b9d2 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,876 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.20-py3-none-any.whl#sha256=d89940dcd57daaa198de1699ab7a5e3c6607c4a114ccca61e5431623f06e5119 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,877 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.19-py3-none-any.whl#sha256=4fc377b60561d29ea1ef43cd9aedd3ab95b21f4c45a58c1e4cadbadaf743b356 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,877 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.18-py3-none-any.whl#sha256=e68f07045a6a72865a8664f7d53d43b4abb3f2f4d35f6cfe9ba685acf6fdecb0 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,878 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.17-py3-none-any.whl#sha256=75abc5c8573218e8036c6e4bf436fa090d127a7e30d853310c7134eeac3ba6e8 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,878 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.16-py3-none-any.whl#sha256=1320b98733e0bc6ad9ce13b5dd897b4bc81267c1b828fb41ef6efc85571130d0 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-10-30T14:28:15,879 Skipping link: not a file: https://www.piwheels.org/simple/bluepyemodel/ 2023-10-30T14:28:15,879 Skipping link: not a file: https://pypi.org/simple/bluepyemodel/ 2023-10-30T14:28:15,904 Given no hashes to check 1 links for project 'bluepyemodel': discarding no candidates 2023-10-30T14:28:15,924 Collecting bluepyemodel==0.0.57 2023-10-30T14:28:15,926 Created temporary directory: /tmp/pip-unpack-mb3w1yjz 2023-10-30T14:28:16,152 Downloading bluepyemodel-0.0.57.tar.gz (13.0 MB) 2023-10-30T14:28:20,928 Added bluepyemodel==0.0.57 from https://files.pythonhosted.org/packages/58/aa/f7b390c124c97c2c8ad4689ae39a6b849075d98d0c0ac9f9c9a0a3bafe66/bluepyemodel-0.0.57.tar.gz to build tracker '/tmp/pip-build-tracker-8nrla_jq' 2023-10-30T14:28:20,931 Running setup.py (path:/tmp/pip-wheel-tkz8pp82/bluepyemodel_0c73d98d1cb547b68efffd4629092d8c/setup.py) egg_info for package bluepyemodel 2023-10-30T14:28:20,932 Created temporary directory: /tmp/pip-pip-egg-info-qj90ynwb 2023-10-30T14:28:20,933 Preparing metadata (setup.py): started 2023-10-30T14:28:20,934 Running command python setup.py egg_info 2023-10-30T14:28:21,374 /tmp/pip-wheel-tkz8pp82/bluepyemodel_0c73d98d1cb547b68efffd4629092d8c/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-10-30T14:28:21,374 import imp 2023-10-30T14:28:21,683 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-30T14:28:21,684 !! 2023-10-30T14:28:21,685 ******************************************************************************** 2023-10-30T14:28:21,686 Requirements should be satisfied by a PEP 517 installer. 2023-10-30T14:28:21,687 If you are using pip, you can try `pip install --use-pep517`. 2023-10-30T14:28:21,687 ******************************************************************************** 2023-10-30T14:28:21,689 !! 2023-10-30T14:28:21,689 dist.fetch_build_eggs(dist.setup_requires) 2023-10-30T14:28:24,870 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-10-30T14:28:24,979 running egg_info 2023-10-30T14:28:24,981 creating /tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info 2023-10-30T14:28:25,009 writing /tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/PKG-INFO 2023-10-30T14:28:25,018 writing dependency_links to /tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/dependency_links.txt 2023-10-30T14:28:25,023 writing requirements to /tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/requires.txt 2023-10-30T14:28:25,036 writing top-level names to /tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/top_level.txt 2023-10-30T14:28:25,037 writing manifest file '/tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/SOURCES.txt' 2023-10-30T14:28:25,226 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-30T14:28:25,233 reading manifest file '/tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/SOURCES.txt' 2023-10-30T14:28:25,234 reading manifest template 'MANIFEST.in' 2023-10-30T14:28:25,235 adding license file 'LICENSE.txt' 2023-10-30T14:28:25,236 adding license file 'COPYING' 2023-10-30T14:28:25,236 adding license file 'AUTHORS.txt' 2023-10-30T14:28:25,240 writing manifest file '/tmp/pip-pip-egg-info-qj90ynwb/bluepyemodel.egg-info/SOURCES.txt' 2023-10-30T14:28:25,360 Preparing metadata (setup.py): finished with status 'done' 2023-10-30T14:28:25,364 Source in /tmp/pip-wheel-tkz8pp82/bluepyemodel_0c73d98d1cb547b68efffd4629092d8c has version 0.0.57, which satisfies requirement bluepyemodel==0.0.57 from https://files.pythonhosted.org/packages/58/aa/f7b390c124c97c2c8ad4689ae39a6b849075d98d0c0ac9f9c9a0a3bafe66/bluepyemodel-0.0.57.tar.gz 2023-10-30T14:28:25,365 Removed bluepyemodel==0.0.57 from https://files.pythonhosted.org/packages/58/aa/f7b390c124c97c2c8ad4689ae39a6b849075d98d0c0ac9f9c9a0a3bafe66/bluepyemodel-0.0.57.tar.gz from build tracker '/tmp/pip-build-tracker-8nrla_jq' 2023-10-30T14:28:25,370 Created temporary directory: /tmp/pip-unpack-6rfh1cmt 2023-10-30T14:28:25,371 Created temporary directory: /tmp/pip-unpack-bys2v735 2023-10-30T14:28:25,430 Building wheels for collected packages: bluepyemodel 2023-10-30T14:28:25,434 Created temporary directory: /tmp/pip-wheel-zw0qqj3q 2023-10-30T14:28:25,435 Building wheel for bluepyemodel (setup.py): started 2023-10-30T14:28:25,436 Destination directory: /tmp/pip-wheel-zw0qqj3q 2023-10-30T14:28:25,436 Running command python setup.py bdist_wheel 2023-10-30T14:28:25,872 /tmp/pip-wheel-tkz8pp82/bluepyemodel_0c73d98d1cb547b68efffd4629092d8c/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-10-30T14:28:25,872 import imp 2023-10-30T14:28:26,169 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-10-30T14:28:26,170 !! 2023-10-30T14:28:26,171 ******************************************************************************** 2023-10-30T14:28:26,172 Requirements should be satisfied by a PEP 517 installer. 2023-10-30T14:28:26,172 If you are using pip, you can try `pip install --use-pep517`. 2023-10-30T14:28:26,173 ******************************************************************************** 2023-10-30T14:28:26,174 !! 2023-10-30T14:28:26,175 dist.fetch_build_eggs(dist.setup_requires) 2023-10-30T14:28:26,730 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-10-30T14:28:26,833 running bdist_wheel 2023-10-30T14:28:26,975 running build 2023-10-30T14:28:26,976 running build_py 2023-10-30T14:28:27,007 creating build 2023-10-30T14:28:27,008 creating build/lib 2023-10-30T14:28:27,009 creating build/lib/tests 2023-10-30T14:28:27,010 copying tests/__init__.py -> build/lib/tests 2023-10-30T14:28:27,013 creating build/lib/bluepyemodel 2023-10-30T14:28:27,014 copying bluepyemodel/__init__.py -> build/lib/bluepyemodel 2023-10-30T14:28:27,016 creating build/lib/tests/functional_tests 2023-10-30T14:28:27,017 copying tests/functional_tests/test_validation.py -> build/lib/tests/functional_tests 2023-10-30T14:28:27,019 copying tests/functional_tests/__init__.py -> build/lib/tests/functional_tests 2023-10-30T14:28:27,021 copying tests/functional_tests/test_protocols.py -> build/lib/tests/functional_tests 2023-10-30T14:28:27,024 creating build/lib/tests/unit_tests 2023-10-30T14:28:27,024 copying tests/unit_tests/test_tools.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,026 copying tests/unit_tests/test_ecodes.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,029 copying tests/unit_tests/test_emodelmetadata.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,031 copying tests/unit_tests/test_local_access_point.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,033 copying tests/unit_tests/test_optimisation.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,034 copying tests/unit_tests/__init__.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,036 copying tests/unit_tests/test_targets_configuration.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,038 copying tests/unit_tests/test_fitness_calculator_configuration.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,040 copying tests/unit_tests/test_evaluator.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,042 copying tests/unit_tests/test_model_parameters_configuration.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,044 copying tests/unit_tests/test_validation_functions.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,045 copying tests/unit_tests/test_model.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,047 copying tests/unit_tests/test_plotting.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,049 copying tests/unit_tests/test_emodel_pipeline.py -> build/lib/tests/unit_tests 2023-10-30T14:28:27,051 creating build/lib/tests/test_models 2023-10-30T14:28:27,052 copying tests/test_models/dummycells.py -> build/lib/tests/test_models 2023-10-30T14:28:27,054 copying tests/test_models/__init__.py -> build/lib/tests/test_models 2023-10-30T14:28:27,056 creating build/lib/bluepyemodel/export_emodel 2023-10-30T14:28:27,057 copying bluepyemodel/export_emodel/utils.py -> build/lib/bluepyemodel/export_emodel 2023-10-30T14:28:27,059 copying bluepyemodel/export_emodel/export_emodel.py -> build/lib/bluepyemodel/export_emodel 2023-10-30T14:28:27,061 copying bluepyemodel/export_emodel/__init__.py -> build/lib/bluepyemodel/export_emodel 2023-10-30T14:28:27,063 creating build/lib/bluepyemodel/tasks 2023-10-30T14:28:27,064 copying bluepyemodel/tasks/config.py -> build/lib/bluepyemodel/tasks 2023-10-30T14:28:27,066 copying bluepyemodel/tasks/luigi_custom.py -> build/lib/bluepyemodel/tasks 2023-10-30T14:28:27,068 copying bluepyemodel/tasks/luigi_tools.py -> build/lib/bluepyemodel/tasks 2023-10-30T14:28:27,070 copying bluepyemodel/tasks/__init__.py -> build/lib/bluepyemodel/tasks 2023-10-30T14:28:27,073 creating build/lib/bluepyemodel/optimisation 2023-10-30T14:28:27,073 copying bluepyemodel/optimisation/__init__.py -> build/lib/bluepyemodel/optimisation 2023-10-30T14:28:27,075 copying bluepyemodel/optimisation/optimisation.py -> build/lib/bluepyemodel/optimisation 2023-10-30T14:28:27,078 creating build/lib/bluepyemodel/tools 2023-10-30T14:28:27,079 copying bluepyemodel/tools/utils.py -> build/lib/bluepyemodel/tools 2023-10-30T14:28:27,082 copying bluepyemodel/tools/mechanisms.py -> build/lib/bluepyemodel/tools 2023-10-30T14:28:27,084 copying bluepyemodel/tools/morphology.py -> build/lib/bluepyemodel/tools 2023-10-30T14:28:27,086 copying bluepyemodel/tools/search_pdfs.py -> build/lib/bluepyemodel/tools 2023-10-30T14:28:27,088 copying bluepyemodel/tools/__init__.py -> build/lib/bluepyemodel/tools 2023-10-30T14:28:27,090 copying bluepyemodel/tools/multiprocessing.py -> build/lib/bluepyemodel/tools 2023-10-30T14:28:27,092 creating build/lib/bluepyemodel/access_point 2023-10-30T14:28:27,093 copying bluepyemodel/access_point/access_point.py -> build/lib/bluepyemodel/access_point 2023-10-30T14:28:27,096 copying bluepyemodel/access_point/__init__.py -> build/lib/bluepyemodel/access_point 2023-10-30T14:28:27,098 copying bluepyemodel/access_point/local.py -> build/lib/bluepyemodel/access_point 2023-10-30T14:28:27,101 creating build/lib/bluepyemodel/validation 2023-10-30T14:28:27,102 copying bluepyemodel/validation/validation.py -> build/lib/bluepyemodel/validation 2023-10-30T14:28:27,104 copying bluepyemodel/validation/__init__.py -> build/lib/bluepyemodel/validation 2023-10-30T14:28:27,106 copying bluepyemodel/validation/validation_functions.py -> build/lib/bluepyemodel/validation 2023-10-30T14:28:27,108 creating build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,109 copying bluepyemodel/ecode/sahp.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,111 copying bluepyemodel/ecode/dendrite.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,114 copying bluepyemodel/ecode/iv.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,115 copying bluepyemodel/ecode/firepattern.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,117 copying bluepyemodel/ecode/noiseou3.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,118 copying bluepyemodel/ecode/random_square_inputs.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,121 copying bluepyemodel/ecode/dehyperpol.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,123 copying bluepyemodel/ecode/apwaveform.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,124 copying bluepyemodel/ecode/idrest.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,126 copying bluepyemodel/ecode/poscheops.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,128 copying bluepyemodel/ecode/probampanmda_ems.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,130 copying bluepyemodel/ecode/spikerec.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,132 copying bluepyemodel/ecode/subwhitenoise.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,134 copying bluepyemodel/ecode/__init__.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,136 copying bluepyemodel/ecode/sinespec.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,137 copying bluepyemodel/ecode/comb.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,140 copying bluepyemodel/ecode/stimulus.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,142 copying bluepyemodel/ecode/hyperdepol.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,144 copying bluepyemodel/ecode/negcheops.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,146 copying bluepyemodel/ecode/customfromfile.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,148 copying bluepyemodel/ecode/noise.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,149 copying bluepyemodel/ecode/ramp.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,151 copying bluepyemodel/ecode/whitenoise.py -> build/lib/bluepyemodel/ecode 2023-10-30T14:28:27,154 creating build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,155 copying bluepyemodel/emodel_pipeline/emodel.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,157 copying bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,159 copying bluepyemodel/emodel_pipeline/emodel_settings.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,162 copying bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,164 copying bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,166 copying bluepyemodel/emodel_pipeline/__init__.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,168 copying bluepyemodel/emodel_pipeline/emodel_script.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,170 copying bluepyemodel/emodel_pipeline/plotting.py -> build/lib/bluepyemodel/emodel_pipeline 2023-10-30T14:28:27,173 creating build/lib/bluepyemodel/model 2023-10-30T14:28:27,174 copying bluepyemodel/model/neuron_model_configuration.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,177 copying bluepyemodel/model/model_configurator.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,179 copying bluepyemodel/model/model.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,181 copying bluepyemodel/model/utils.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,183 copying bluepyemodel/model/distribution_configuration.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,185 copying bluepyemodel/model/model_configuration.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,186 copying bluepyemodel/model/parameter_configuration.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,188 copying bluepyemodel/model/morphology_configuration.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,190 copying bluepyemodel/model/mechanism_configuration.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,191 copying bluepyemodel/model/__init__.py -> build/lib/bluepyemodel/model 2023-10-30T14:28:27,194 creating build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,194 copying bluepyemodel/efeatures_extraction/target.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,196 copying bluepyemodel/efeatures_extraction/auto_targets.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,198 copying bluepyemodel/efeatures_extraction/targets_configuration.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,200 copying bluepyemodel/efeatures_extraction/targets_configurator.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,202 copying bluepyemodel/efeatures_extraction/__init__.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,204 copying bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,206 copying bluepyemodel/efeatures_extraction/trace_file.py -> build/lib/bluepyemodel/efeatures_extraction 2023-10-30T14:28:27,209 creating build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,210 copying bluepyemodel/evaluation/evaluation.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,212 copying bluepyemodel/evaluation/efel_feature_bpem.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,214 copying bluepyemodel/evaluation/protocols.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,217 copying bluepyemodel/evaluation/protocol_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,219 copying bluepyemodel/evaluation/recordings.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,221 copying bluepyemodel/evaluation/efeature_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,223 copying bluepyemodel/evaluation/modifiers.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,225 copying bluepyemodel/evaluation/__init__.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,227 copying bluepyemodel/evaluation/evaluator.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,230 copying bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/lib/bluepyemodel/evaluation 2023-10-30T14:28:27,233 creating build/lib/bluepyemodel/tasks/emodel_creation 2023-10-30T14:28:27,234 copying bluepyemodel/tasks/emodel_creation/__init__.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-10-30T14:28:27,236 copying bluepyemodel/tasks/emodel_creation/optimisation.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-10-30T14:28:27,239 running egg_info 2023-10-30T14:28:27,268 writing bluepyemodel.egg-info/PKG-INFO 2023-10-30T14:28:27,277 writing dependency_links to bluepyemodel.egg-info/dependency_links.txt 2023-10-30T14:28:27,282 writing requirements to bluepyemodel.egg-info/requires.txt 2023-10-30T14:28:27,283 writing top-level names to bluepyemodel.egg-info/top_level.txt 2023-10-30T14:28:27,389 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-10-30T14:28:27,393 reading manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-10-30T14:28:27,410 reading manifest template 'MANIFEST.in' 2023-10-30T14:28:27,411 adding license file 'LICENSE.txt' 2023-10-30T14:28:27,411 adding license file 'COPYING' 2023-10-30T14:28:27,412 adding license file 'AUTHORS.txt' 2023-10-30T14:28:27,420 writing manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-10-30T14:28:27,422 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.ecode.data' is absent from the `packages` configuration. 2023-10-30T14:28:27,423 !! 2023-10-30T14:28:27,424 ******************************************************************************** 2023-10-30T14:28:27,424 ############################ 2023-10-30T14:28:27,425 # Package would be ignored # 2023-10-30T14:28:27,425 ############################ 2023-10-30T14:28:27,425 Python recognizes 'bluepyemodel.ecode.data' as an importable package[^1], 2023-10-30T14:28:27,426 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,427 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,427 package, please make sure that 'bluepyemodel.ecode.data' is explicitly added 2023-10-30T14:28:27,428 to the `packages` configuration field. 2023-10-30T14:28:27,429 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,430 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,431 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,432 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,433 If you don't want 'bluepyemodel.ecode.data' to be distributed and are 2023-10-30T14:28:27,433 already explicitly excluding 'bluepyemodel.ecode.data' via 2023-10-30T14:28:27,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,435 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,435 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,436 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,437 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,439 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,440 even if it does not contain any `.py` files. 2023-10-30T14:28:27,440 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,441 directory, all directories are treated like packages. 2023-10-30T14:28:27,442 ******************************************************************************** 2023-10-30T14:28:27,443 !! 2023-10-30T14:28:27,443 check.warn(importable) 2023-10-30T14:28:27,444 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.export_emodel.templates' is absent from the `packages` configuration. 2023-10-30T14:28:27,445 !! 2023-10-30T14:28:27,446 ******************************************************************************** 2023-10-30T14:28:27,447 ############################ 2023-10-30T14:28:27,447 # Package would be ignored # 2023-10-30T14:28:27,448 ############################ 2023-10-30T14:28:27,448 Python recognizes 'bluepyemodel.export_emodel.templates' as an importable package[^1], 2023-10-30T14:28:27,449 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,450 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,451 package, please make sure that 'bluepyemodel.export_emodel.templates' is explicitly added 2023-10-30T14:28:27,451 to the `packages` configuration field. 2023-10-30T14:28:27,452 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,453 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,454 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,456 If you don't want 'bluepyemodel.export_emodel.templates' to be distributed and are 2023-10-30T14:28:27,456 already explicitly excluding 'bluepyemodel.export_emodel.templates' via 2023-10-30T14:28:27,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,458 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,459 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,462 even if it does not contain any `.py` files. 2023-10-30T14:28:27,465 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,466 directory, all directories are treated like packages. 2023-10-30T14:28:27,466 ******************************************************************************** 2023-10-30T14:28:27,467 !! 2023-10-30T14:28:27,468 check.warn(importable) 2023-10-30T14:28:27,469 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data' is absent from the `packages` configuration. 2023-10-30T14:28:27,469 !! 2023-10-30T14:28:27,471 ******************************************************************************** 2023-10-30T14:28:27,472 ############################ 2023-10-30T14:28:27,473 # Package would be ignored # 2023-10-30T14:28:27,474 ############################ 2023-10-30T14:28:27,474 Python recognizes 'tests.test_data' as an importable package[^1], 2023-10-30T14:28:27,475 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,476 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,477 package, please make sure that 'tests.test_data' is explicitly added 2023-10-30T14:28:27,477 to the `packages` configuration field. 2023-10-30T14:28:27,478 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,480 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,481 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,484 If you don't want 'tests.test_data' to be distributed and are 2023-10-30T14:28:27,484 already explicitly excluding 'tests.test_data' via 2023-10-30T14:28:27,485 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,486 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,486 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,487 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,488 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,490 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,490 even if it does not contain any `.py` files. 2023-10-30T14:28:27,491 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,491 directory, all directories are treated like packages. 2023-10-30T14:28:27,492 ******************************************************************************** 2023-10-30T14:28:27,493 !! 2023-10-30T14:28:27,493 check.warn(importable) 2023-10-30T14:28:27,494 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.config' is absent from the `packages` configuration. 2023-10-30T14:28:27,494 !! 2023-10-30T14:28:27,495 ******************************************************************************** 2023-10-30T14:28:27,496 ############################ 2023-10-30T14:28:27,496 # Package would be ignored # 2023-10-30T14:28:27,497 ############################ 2023-10-30T14:28:27,497 Python recognizes 'tests.test_data.config' as an importable package[^1], 2023-10-30T14:28:27,498 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,499 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,499 package, please make sure that 'tests.test_data.config' is explicitly added 2023-10-30T14:28:27,500 to the `packages` configuration field. 2023-10-30T14:28:27,501 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,501 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,502 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,503 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,504 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,505 If you don't want 'tests.test_data.config' to be distributed and are 2023-10-30T14:28:27,506 already explicitly excluding 'tests.test_data.config' via 2023-10-30T14:28:27,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,507 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,509 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,510 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,511 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,512 even if it does not contain any `.py` files. 2023-10-30T14:28:27,513 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,513 directory, all directories are treated like packages. 2023-10-30T14:28:27,514 ******************************************************************************** 2023-10-30T14:28:27,515 !! 2023-10-30T14:28:27,515 check.warn(importable) 2023-10-30T14:28:27,516 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.ephys_data' is absent from the `packages` configuration. 2023-10-30T14:28:27,516 !! 2023-10-30T14:28:27,518 ******************************************************************************** 2023-10-30T14:28:27,518 ############################ 2023-10-30T14:28:27,519 # Package would be ignored # 2023-10-30T14:28:27,519 ############################ 2023-10-30T14:28:27,520 Python recognizes 'tests.test_data.ephys_data' as an importable package[^1], 2023-10-30T14:28:27,521 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,521 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,522 package, please make sure that 'tests.test_data.ephys_data' is explicitly added 2023-10-30T14:28:27,522 to the `packages` configuration field. 2023-10-30T14:28:27,523 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,524 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,524 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,525 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,527 If you don't want 'tests.test_data.ephys_data' to be distributed and are 2023-10-30T14:28:27,528 already explicitly excluding 'tests.test_data.ephys_data' via 2023-10-30T14:28:27,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,529 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,530 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,531 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,533 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,533 even if it does not contain any `.py` files. 2023-10-30T14:28:27,534 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,534 directory, all directories are treated like packages. 2023-10-30T14:28:27,535 ******************************************************************************** 2023-10-30T14:28:27,536 !! 2023-10-30T14:28:27,536 check.warn(importable) 2023-10-30T14:28:27,537 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.mechanisms' is absent from the `packages` configuration. 2023-10-30T14:28:27,538 !! 2023-10-30T14:28:27,539 ******************************************************************************** 2023-10-30T14:28:27,540 ############################ 2023-10-30T14:28:27,541 # Package would be ignored # 2023-10-30T14:28:27,541 ############################ 2023-10-30T14:28:27,542 Python recognizes 'tests.test_data.mechanisms' as an importable package[^1], 2023-10-30T14:28:27,542 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,543 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,544 package, please make sure that 'tests.test_data.mechanisms' is explicitly added 2023-10-30T14:28:27,545 to the `packages` configuration field. 2023-10-30T14:28:27,546 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,547 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,548 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,551 If you don't want 'tests.test_data.mechanisms' to be distributed and are 2023-10-30T14:28:27,552 already explicitly excluding 'tests.test_data.mechanisms' via 2023-10-30T14:28:27,552 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,554 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,555 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,556 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,557 even if it does not contain any `.py` files. 2023-10-30T14:28:27,558 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,558 directory, all directories are treated like packages. 2023-10-30T14:28:27,559 ******************************************************************************** 2023-10-30T14:28:27,560 !! 2023-10-30T14:28:27,560 check.warn(importable) 2023-10-30T14:28:27,561 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.morphology' is absent from the `packages` configuration. 2023-10-30T14:28:27,561 !! 2023-10-30T14:28:27,562 ******************************************************************************** 2023-10-30T14:28:27,563 ############################ 2023-10-30T14:28:27,563 # Package would be ignored # 2023-10-30T14:28:27,564 ############################ 2023-10-30T14:28:27,564 Python recognizes 'tests.test_data.morphology' as an importable package[^1], 2023-10-30T14:28:27,565 but it is absent from setuptools' `packages` configuration. 2023-10-30T14:28:27,566 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-30T14:28:27,567 package, please make sure that 'tests.test_data.morphology' is explicitly added 2023-10-30T14:28:27,568 to the `packages` configuration field. 2023-10-30T14:28:27,569 Alternatively, you can also rely on setuptools' discovery methods 2023-10-30T14:28:27,570 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-30T14:28:27,571 instead of `find_packages(...)`/`find:`). 2023-10-30T14:28:27,573 You can read more about "package discovery" on setuptools documentation page: 2023-10-30T14:28:27,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-30T14:28:27,576 If you don't want 'tests.test_data.morphology' to be distributed and are 2023-10-30T14:28:27,577 already explicitly excluding 'tests.test_data.morphology' via 2023-10-30T14:28:27,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-30T14:28:27,579 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-30T14:28:27,579 combination with a more fine grained `package-data` configuration. 2023-10-30T14:28:27,581 You can read more about "package data files" on setuptools documentation page: 2023-10-30T14:28:27,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-30T14:28:27,585 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-30T14:28:27,586 even if it does not contain any `.py` files. 2023-10-30T14:28:27,603 On the other hand, currently there is no concept of package data 2023-10-30T14:28:27,625 directory, all directories are treated like packages. 2023-10-30T14:28:27,640 ******************************************************************************** 2023-10-30T14:28:27,642 !! 2023-10-30T14:28:27,642 check.warn(importable) 2023-10-30T14:28:27,643 creating build/lib/tests/test_data 2023-10-30T14:28:27,643 copying tests/test_data/final.json -> build/lib/tests/test_data 2023-10-30T14:28:27,644 copying tests/test_data/final_tmp.json -> build/lib/tests/test_data 2023-10-30T14:28:27,645 copying tests/test_data/test_APWaveform_320.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,645 copying tests/test_data/test_IV_-100.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,645 copying tests/test_data/test_RMPProtocol.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,646 copying tests/test_data/test_RinProtocol.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,646 copying tests/test_data/test_SpikeRec_600.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,647 copying tests/test_data/test_Step_200.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,647 copying tests/test_data/test_Step_280.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,648 copying tests/test_data/test_bAP.ca_ais.cai.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,648 copying tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,648 copying tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,649 copying tests/test_data/test_bAP.ca_soma.cai.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,649 copying tests/test_data/test_bAP.dend1.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,650 copying tests/test_data/test_bAP.dend2.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,650 copying tests/test_data/test_bAP.soma.v.csv -> build/lib/tests/test_data 2023-10-30T14:28:27,651 copying tests/test_data/test_features.json -> build/lib/tests/test_data 2023-10-30T14:28:27,651 copying tests/test_data/test_mechanisms.json -> build/lib/tests/test_data 2023-10-30T14:28:27,652 copying tests/test_data/test_parameters.json -> build/lib/tests/test_data 2023-10-30T14:28:27,652 copying tests/test_data/test_protocols.json -> build/lib/tests/test_data 2023-10-30T14:28:27,653 copying tests/test_data/test_recipes.json -> build/lib/tests/test_data 2023-10-30T14:28:27,653 creating build/lib/tests/test_data/config 2023-10-30T14:28:27,654 copying tests/test_data/config/config_dict.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,654 copying tests/test_data/config/features.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,655 copying tests/test_data/config/params.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,655 copying tests/test_data/config/params_restart.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,656 copying tests/test_data/config/protocols.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,656 copying tests/test_data/config/recipes.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,657 copying tests/test_data/config/recipes_restart.json -> build/lib/tests/test_data/config 2023-10-30T14:28:27,658 creating build/lib/tests/test_data/ephys_data 2023-10-30T14:28:27,658 copying tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/lib/tests/test_data/ephys_data 2023-10-30T14:28:27,658 creating build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,659 copying tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,660 copying tests/test_data/mechanisms/Ca_HVA2.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,660 copying tests/test_data/mechanisms/Ca_LVAst.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,661 copying tests/test_data/mechanisms/Ih.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,661 copying tests/test_data/mechanisms/K_Pst.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,662 copying tests/test_data/mechanisms/K_Tst.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,662 copying tests/test_data/mechanisms/NaTg.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,663 copying tests/test_data/mechanisms/Nap_Et2.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,664 copying tests/test_data/mechanisms/SK_E2.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,666 copying tests/test_data/mechanisms/SKv3_1.mod -> build/lib/tests/test_data/mechanisms 2023-10-30T14:28:27,668 creating build/lib/tests/test_data/morphology 2023-10-30T14:28:27,669 copying tests/test_data/morphology/C060114A5.asc -> build/lib/tests/test_data/morphology 2023-10-30T14:28:27,680 creating build/lib/bluepyemodel/export_emodel/templates 2023-10-30T14:28:27,681 copying bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-30T14:28:27,683 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-30T14:28:27,685 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-10-30T14:28:27,688 creating build/lib/bluepyemodel/ecode/data 2023-10-30T14:28:27,688 copying bluepyemodel/ecode/data/NoiseOU3.txt -> build/lib/bluepyemodel/ecode/data 2023-10-30T14:28:28,130 copying bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-10-30T14:28:28,167 copying bluepyemodel/ecode/data/WhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-10-30T14:28:28,660 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-30T14:28:28,660 !! 2023-10-30T14:28:28,661 ******************************************************************************** 2023-10-30T14:28:28,662 Please avoid running ``setup.py`` directly. 2023-10-30T14:28:28,662 Instead, use pypa/build, pypa/installer or other 2023-10-30T14:28:28,663 standards-based tools. 2023-10-30T14:28:28,664 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-30T14:28:28,665 ******************************************************************************** 2023-10-30T14:28:28,666 !! 2023-10-30T14:28:28,666 self.initialize_options() 2023-10-30T14:28:28,689 installing to build/bdist.linux-armv7l/wheel 2023-10-30T14:28:28,690 running install 2023-10-30T14:28:28,714 running install_lib 2023-10-30T14:28:28,743 creating build/bdist.linux-armv7l 2023-10-30T14:28:28,743 creating build/bdist.linux-armv7l/wheel 2023-10-30T14:28:28,745 creating build/bdist.linux-armv7l/wheel/tests 2023-10-30T14:28:28,747 creating build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-30T14:28:28,748 copying build/lib/tests/functional_tests/test_validation.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-30T14:28:28,750 copying build/lib/tests/functional_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-30T14:28:28,752 copying build/lib/tests/functional_tests/test_protocols.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-10-30T14:28:28,754 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-10-30T14:28:28,756 creating build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,757 copying build/lib/tests/unit_tests/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,759 copying build/lib/tests/unit_tests/test_ecodes.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,762 copying build/lib/tests/unit_tests/test_emodelmetadata.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,765 copying build/lib/tests/unit_tests/test_local_access_point.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,767 copying build/lib/tests/unit_tests/test_optimisation.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,769 copying build/lib/tests/unit_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,771 copying build/lib/tests/unit_tests/test_targets_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,773 copying build/lib/tests/unit_tests/test_fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,775 copying build/lib/tests/unit_tests/test_evaluator.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,777 copying build/lib/tests/unit_tests/test_model_parameters_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,780 copying build/lib/tests/unit_tests/test_validation_functions.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,782 copying build/lib/tests/unit_tests/test_model.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,783 copying build/lib/tests/unit_tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,785 copying build/lib/tests/unit_tests/test_emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-10-30T14:28:28,788 creating build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-30T14:28:28,788 copying build/lib/tests/test_models/dummycells.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-30T14:28:28,790 copying build/lib/tests/test_models/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-10-30T14:28:28,793 creating build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,794 copying build/lib/tests/test_data/test_protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,796 copying build/lib/tests/test_data/test_bAP.dend2.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,799 copying build/lib/tests/test_data/test_bAP.ca_ais.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,802 copying build/lib/tests/test_data/test_Step_200.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,808 copying build/lib/tests/test_data/test_bAP.dend1.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,811 copying build/lib/tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,813 copying build/lib/tests/test_data/test_mechanisms.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,816 creating build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-10-30T14:28:28,817 copying build/lib/tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-10-30T14:28:28,897 copying build/lib/tests/test_data/test_IV_-100.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,899 copying build/lib/tests/test_data/test_bAP.ca_soma.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,902 copying build/lib/tests/test_data/test_RMPProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,904 copying build/lib/tests/test_data/final.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,906 copying build/lib/tests/test_data/test_recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,908 creating build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,909 copying build/lib/tests/test_data/config/recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,911 copying build/lib/tests/test_data/config/recipes_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,913 copying build/lib/tests/test_data/config/features.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,916 copying build/lib/tests/test_data/config/params.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,918 copying build/lib/tests/test_data/config/protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,920 copying build/lib/tests/test_data/config/config_dict.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,922 copying build/lib/tests/test_data/config/params_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-10-30T14:28:28,924 copying build/lib/tests/test_data/test_SpikeRec_600.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,927 creating build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-10-30T14:28:28,928 copying build/lib/tests/test_data/morphology/C060114A5.asc -> build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-10-30T14:28:28,940 copying build/lib/tests/test_data/test_features.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,943 copying build/lib/tests/test_data/test_Step_280.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,951 copying build/lib/tests/test_data/test_RinProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,953 copying build/lib/tests/test_data/test_parameters.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,955 copying build/lib/tests/test_data/final_tmp.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,958 copying build/lib/tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,961 creating build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,962 copying build/lib/tests/test_data/mechanisms/Ca_LVAst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,964 copying build/lib/tests/test_data/mechanisms/Nap_Et2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,966 copying build/lib/tests/test_data/mechanisms/NaTg.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,968 copying build/lib/tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,970 copying build/lib/tests/test_data/mechanisms/SKv3_1.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,972 copying build/lib/tests/test_data/mechanisms/Ca_HVA2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,973 copying build/lib/tests/test_data/mechanisms/K_Pst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,975 copying build/lib/tests/test_data/mechanisms/SK_E2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,977 copying build/lib/tests/test_data/mechanisms/Ih.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,978 copying build/lib/tests/test_data/mechanisms/K_Tst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-10-30T14:28:28,980 copying build/lib/tests/test_data/test_APWaveform_320.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,983 copying build/lib/tests/test_data/test_bAP.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-10-30T14:28:28,986 creating build/bdist.linux-armv7l/wheel/bluepyemodel 2023-10-30T14:28:28,988 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-30T14:28:28,989 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-30T14:28:28,990 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-30T14:28:28,993 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-30T14:28:28,995 copying build/lib/bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-10-30T14:28:28,997 copying build/lib/bluepyemodel/export_emodel/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-30T14:28:28,999 copying build/lib/bluepyemodel/export_emodel/export_emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-30T14:28:29,001 copying build/lib/bluepyemodel/export_emodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-10-30T14:28:29,004 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-30T14:28:29,004 copying build/lib/bluepyemodel/tasks/config.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-30T14:28:29,006 copying build/lib/bluepyemodel/tasks/luigi_custom.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-30T14:28:29,008 copying build/lib/bluepyemodel/tasks/luigi_tools.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-30T14:28:29,010 copying build/lib/bluepyemodel/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-10-30T14:28:29,012 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-30T14:28:29,013 copying build/lib/bluepyemodel/tasks/emodel_creation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-30T14:28:29,014 copying build/lib/bluepyemodel/tasks/emodel_creation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-10-30T14:28:29,018 creating build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-30T14:28:29,019 copying build/lib/bluepyemodel/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-30T14:28:29,021 copying build/lib/bluepyemodel/optimisation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-10-30T14:28:29,023 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,024 copying build/lib/bluepyemodel/tools/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,027 copying build/lib/bluepyemodel/tools/mechanisms.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,029 copying build/lib/bluepyemodel/tools/morphology.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,031 copying build/lib/bluepyemodel/tools/search_pdfs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,033 copying build/lib/bluepyemodel/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,035 copying build/lib/bluepyemodel/tools/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-10-30T14:28:29,037 creating build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-30T14:28:29,038 copying build/lib/bluepyemodel/access_point/access_point.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-30T14:28:29,041 copying build/lib/bluepyemodel/access_point/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-30T14:28:29,043 copying build/lib/bluepyemodel/access_point/local.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-10-30T14:28:29,046 creating build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-30T14:28:29,048 copying build/lib/bluepyemodel/validation/validation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-30T14:28:29,050 copying build/lib/bluepyemodel/validation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-30T14:28:29,052 copying build/lib/bluepyemodel/validation/validation_functions.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-10-30T14:28:29,055 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,056 copying build/lib/bluepyemodel/ecode/sahp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,058 copying build/lib/bluepyemodel/ecode/dendrite.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,060 copying build/lib/bluepyemodel/ecode/iv.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,062 copying build/lib/bluepyemodel/ecode/firepattern.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,064 copying build/lib/bluepyemodel/ecode/noiseou3.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,066 copying build/lib/bluepyemodel/ecode/random_square_inputs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,068 copying build/lib/bluepyemodel/ecode/dehyperpol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,070 copying build/lib/bluepyemodel/ecode/apwaveform.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,072 copying build/lib/bluepyemodel/ecode/idrest.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,074 copying build/lib/bluepyemodel/ecode/poscheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,077 copying build/lib/bluepyemodel/ecode/probampanmda_ems.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,079 copying build/lib/bluepyemodel/ecode/spikerec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,081 copying build/lib/bluepyemodel/ecode/subwhitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,083 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-30T14:28:29,084 copying build/lib/bluepyemodel/ecode/data/NoiseOU3.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-30T14:28:29,516 copying build/lib/bluepyemodel/ecode/data/WhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-30T14:28:29,934 copying build/lib/bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-10-30T14:28:29,975 copying build/lib/bluepyemodel/ecode/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,977 copying build/lib/bluepyemodel/ecode/sinespec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,979 copying build/lib/bluepyemodel/ecode/comb.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,981 copying build/lib/bluepyemodel/ecode/stimulus.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,984 copying build/lib/bluepyemodel/ecode/hyperdepol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,986 copying build/lib/bluepyemodel/ecode/negcheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,989 copying build/lib/bluepyemodel/ecode/customfromfile.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,991 copying build/lib/bluepyemodel/ecode/noise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,992 copying build/lib/bluepyemodel/ecode/ramp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,995 copying build/lib/bluepyemodel/ecode/whitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-10-30T14:28:29,997 creating build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:29,998 copying build/lib/bluepyemodel/emodel_pipeline/emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,001 copying build/lib/bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,003 copying build/lib/bluepyemodel/emodel_pipeline/emodel_settings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,005 copying build/lib/bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,008 copying build/lib/bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,010 copying build/lib/bluepyemodel/emodel_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,012 copying build/lib/bluepyemodel/emodel_pipeline/emodel_script.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,014 copying build/lib/bluepyemodel/emodel_pipeline/plotting.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-10-30T14:28:30,017 creating build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,018 copying build/lib/bluepyemodel/model/neuron_model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,021 copying build/lib/bluepyemodel/model/model_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,023 copying build/lib/bluepyemodel/model/model.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,025 copying build/lib/bluepyemodel/model/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,027 copying build/lib/bluepyemodel/model/distribution_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,029 copying build/lib/bluepyemodel/model/model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,031 copying build/lib/bluepyemodel/model/parameter_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,033 copying build/lib/bluepyemodel/model/morphology_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,034 copying build/lib/bluepyemodel/model/mechanism_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,036 copying build/lib/bluepyemodel/model/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-10-30T14:28:30,038 copying build/lib/bluepyemodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel 2023-10-30T14:28:30,040 creating build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,041 copying build/lib/bluepyemodel/efeatures_extraction/target.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,043 copying build/lib/bluepyemodel/efeatures_extraction/auto_targets.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,045 copying build/lib/bluepyemodel/efeatures_extraction/targets_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,048 copying build/lib/bluepyemodel/efeatures_extraction/targets_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,050 copying build/lib/bluepyemodel/efeatures_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,052 copying build/lib/bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,054 copying build/lib/bluepyemodel/efeatures_extraction/trace_file.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-10-30T14:28:30,056 creating build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,057 copying build/lib/bluepyemodel/evaluation/evaluation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,060 copying build/lib/bluepyemodel/evaluation/efel_feature_bpem.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,062 copying build/lib/bluepyemodel/evaluation/protocols.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,065 copying build/lib/bluepyemodel/evaluation/protocol_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,067 copying build/lib/bluepyemodel/evaluation/recordings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,069 copying build/lib/bluepyemodel/evaluation/efeature_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,071 copying build/lib/bluepyemodel/evaluation/modifiers.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,074 copying build/lib/bluepyemodel/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,076 copying build/lib/bluepyemodel/evaluation/evaluator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,078 copying build/lib/bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-10-30T14:28:30,081 running install_egg_info 2023-10-30T14:28:30,112 Copying bluepyemodel.egg-info to build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.57-py3.11.egg-info 2023-10-30T14:28:30,123 running install_scripts 2023-10-30T14:28:30,147 creating build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.57.dist-info/WHEEL 2023-10-30T14:28:30,150 creating '/tmp/pip-wheel-zw0qqj3q/bluepyemodel-0.0.57-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-30T14:28:30,152 adding 'bluepyemodel/__init__.py' 2023-10-30T14:28:30,154 adding 'bluepyemodel/access_point/__init__.py' 2023-10-30T14:28:30,156 adding 'bluepyemodel/access_point/access_point.py' 2023-10-30T14:28:30,160 adding 'bluepyemodel/access_point/local.py' 2023-10-30T14:28:30,162 adding 'bluepyemodel/ecode/__init__.py' 2023-10-30T14:28:30,164 adding 'bluepyemodel/ecode/apwaveform.py' 2023-10-30T14:28:30,165 adding 'bluepyemodel/ecode/comb.py' 2023-10-30T14:28:30,167 adding 'bluepyemodel/ecode/customfromfile.py' 2023-10-30T14:28:30,168 adding 'bluepyemodel/ecode/dehyperpol.py' 2023-10-30T14:28:30,170 adding 'bluepyemodel/ecode/dendrite.py' 2023-10-30T14:28:30,172 adding 'bluepyemodel/ecode/firepattern.py' 2023-10-30T14:28:30,173 adding 'bluepyemodel/ecode/hyperdepol.py' 2023-10-30T14:28:30,174 adding 'bluepyemodel/ecode/idrest.py' 2023-10-30T14:28:30,176 adding 'bluepyemodel/ecode/iv.py' 2023-10-30T14:28:30,178 adding 'bluepyemodel/ecode/negcheops.py' 2023-10-30T14:28:30,179 adding 'bluepyemodel/ecode/noise.py' 2023-10-30T14:28:30,180 adding 'bluepyemodel/ecode/noiseou3.py' 2023-10-30T14:28:30,182 adding 'bluepyemodel/ecode/poscheops.py' 2023-10-30T14:28:30,183 adding 'bluepyemodel/ecode/probampanmda_ems.py' 2023-10-30T14:28:30,185 adding 'bluepyemodel/ecode/ramp.py' 2023-10-30T14:28:30,186 adding 'bluepyemodel/ecode/random_square_inputs.py' 2023-10-30T14:28:30,188 adding 'bluepyemodel/ecode/sahp.py' 2023-10-30T14:28:30,189 adding 'bluepyemodel/ecode/sinespec.py' 2023-10-30T14:28:30,191 adding 'bluepyemodel/ecode/spikerec.py' 2023-10-30T14:28:30,192 adding 'bluepyemodel/ecode/stimulus.py' 2023-10-30T14:28:30,194 adding 'bluepyemodel/ecode/subwhitenoise.py' 2023-10-30T14:28:30,195 adding 'bluepyemodel/ecode/whitenoise.py' 2023-10-30T14:28:32,604 adding 'bluepyemodel/ecode/data/NoiseOU3.txt' 2023-10-30T14:28:33,052 adding 'bluepyemodel/ecode/data/SubWhiteNoise.txt' 2023-10-30T14:28:35,466 adding 'bluepyemodel/ecode/data/WhiteNoise.txt' 2023-10-30T14:28:35,710 adding 'bluepyemodel/efeatures_extraction/__init__.py' 2023-10-30T14:28:35,712 adding 'bluepyemodel/efeatures_extraction/auto_targets.py' 2023-10-30T14:28:35,713 adding 'bluepyemodel/efeatures_extraction/efeatures_extraction.py' 2023-10-30T14:28:35,715 adding 'bluepyemodel/efeatures_extraction/target.py' 2023-10-30T14:28:35,717 adding 'bluepyemodel/efeatures_extraction/targets_configuration.py' 2023-10-30T14:28:35,718 adding 'bluepyemodel/efeatures_extraction/targets_configurator.py' 2023-10-30T14:28:35,720 adding 'bluepyemodel/efeatures_extraction/trace_file.py' 2023-10-30T14:28:35,722 adding 'bluepyemodel/emodel_pipeline/__init__.py' 2023-10-30T14:28:35,723 adding 'bluepyemodel/emodel_pipeline/emodel.py' 2023-10-30T14:28:35,725 adding 'bluepyemodel/emodel_pipeline/emodel_metadata.py' 2023-10-30T14:28:35,727 adding 'bluepyemodel/emodel_pipeline/emodel_pipeline.py' 2023-10-30T14:28:35,728 adding 'bluepyemodel/emodel_pipeline/emodel_script.py' 2023-10-30T14:28:35,731 adding 'bluepyemodel/emodel_pipeline/emodel_settings.py' 2023-10-30T14:28:35,732 adding 'bluepyemodel/emodel_pipeline/emodel_workflow.py' 2023-10-30T14:28:35,737 adding 'bluepyemodel/emodel_pipeline/plotting.py' 2023-10-30T14:28:35,739 adding 'bluepyemodel/evaluation/__init__.py' 2023-10-30T14:28:35,740 adding 'bluepyemodel/evaluation/efeature_configuration.py' 2023-10-30T14:28:35,742 adding 'bluepyemodel/evaluation/efel_feature_bpem.py' 2023-10-30T14:28:35,744 adding 'bluepyemodel/evaluation/evaluation.py' 2023-10-30T14:28:35,747 adding 'bluepyemodel/evaluation/evaluator.py' 2023-10-30T14:28:35,750 adding 'bluepyemodel/evaluation/fitness_calculator_configuration.py' 2023-10-30T14:28:35,752 adding 'bluepyemodel/evaluation/modifiers.py' 2023-10-30T14:28:35,754 adding 'bluepyemodel/evaluation/protocol_configuration.py' 2023-10-30T14:28:35,757 adding 'bluepyemodel/evaluation/protocols.py' 2023-10-30T14:28:35,759 adding 'bluepyemodel/evaluation/recordings.py' 2023-10-30T14:28:35,761 adding 'bluepyemodel/export_emodel/__init__.py' 2023-10-30T14:28:35,762 adding 'bluepyemodel/export_emodel/export_emodel.py' 2023-10-30T14:28:35,764 adding 'bluepyemodel/export_emodel/utils.py' 2023-10-30T14:28:35,766 adding 'bluepyemodel/export_emodel/templates/cell_template.jinja2' 2023-10-30T14:28:35,768 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2' 2023-10-30T14:28:35,769 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2' 2023-10-30T14:28:35,771 adding 'bluepyemodel/model/__init__.py' 2023-10-30T14:28:35,773 adding 'bluepyemodel/model/distribution_configuration.py' 2023-10-30T14:28:35,774 adding 'bluepyemodel/model/mechanism_configuration.py' 2023-10-30T14:28:35,776 adding 'bluepyemodel/model/model.py' 2023-10-30T14:28:35,777 adding 'bluepyemodel/model/model_configuration.py' 2023-10-30T14:28:35,779 adding 'bluepyemodel/model/model_configurator.py' 2023-10-30T14:28:35,780 adding 'bluepyemodel/model/morphology_configuration.py' 2023-10-30T14:28:35,783 adding 'bluepyemodel/model/neuron_model_configuration.py' 2023-10-30T14:28:35,785 adding 'bluepyemodel/model/parameter_configuration.py' 2023-10-30T14:28:35,786 adding 'bluepyemodel/model/utils.py' 2023-10-30T14:28:35,788 adding 'bluepyemodel/optimisation/__init__.py' 2023-10-30T14:28:35,789 adding 'bluepyemodel/optimisation/optimisation.py' 2023-10-30T14:28:35,791 adding 'bluepyemodel/tasks/__init__.py' 2023-10-30T14:28:35,792 adding 'bluepyemodel/tasks/config.py' 2023-10-30T14:28:35,794 adding 'bluepyemodel/tasks/luigi_custom.py' 2023-10-30T14:28:35,795 adding 'bluepyemodel/tasks/luigi_tools.py' 2023-10-30T14:28:35,797 adding 'bluepyemodel/tasks/emodel_creation/__init__.py' 2023-10-30T14:28:35,801 adding 'bluepyemodel/tasks/emodel_creation/optimisation.py' 2023-10-30T14:28:35,803 adding 'bluepyemodel/tools/__init__.py' 2023-10-30T14:28:35,804 adding 'bluepyemodel/tools/mechanisms.py' 2023-10-30T14:28:35,806 adding 'bluepyemodel/tools/morphology.py' 2023-10-30T14:28:35,807 adding 'bluepyemodel/tools/multiprocessing.py' 2023-10-30T14:28:35,809 adding 'bluepyemodel/tools/search_pdfs.py' 2023-10-30T14:28:35,810 adding 'bluepyemodel/tools/utils.py' 2023-10-30T14:28:35,812 adding 'bluepyemodel/validation/__init__.py' 2023-10-30T14:28:35,813 adding 'bluepyemodel/validation/validation.py' 2023-10-30T14:28:35,815 adding 'bluepyemodel/validation/validation_functions.py' 2023-10-30T14:28:35,817 adding 'tests/__init__.py' 2023-10-30T14:28:35,819 adding 'tests/functional_tests/__init__.py' 2023-10-30T14:28:35,820 adding 'tests/functional_tests/test_protocols.py' 2023-10-30T14:28:35,822 adding 'tests/functional_tests/test_validation.py' 2023-10-30T14:28:35,825 adding 'tests/test_data/final.json' 2023-10-30T14:28:35,828 adding 'tests/test_data/final_tmp.json' 2023-10-30T14:28:35,833 adding 'tests/test_data/test_APWaveform_320.soma.v.csv' 2023-10-30T14:28:35,835 adding 'tests/test_data/test_IV_-100.soma.v.csv' 2023-10-30T14:28:35,837 adding 'tests/test_data/test_RMPProtocol.soma.v.csv' 2023-10-30T14:28:35,839 adding 'tests/test_data/test_RinProtocol.soma.v.csv' 2023-10-30T14:28:35,841 adding 'tests/test_data/test_SpikeRec_600.soma.v.csv' 2023-10-30T14:28:35,906 adding 'tests/test_data/test_Step_200.soma.v.csv' 2023-10-30T14:28:35,978 adding 'tests/test_data/test_Step_280.soma.v.csv' 2023-10-30T14:28:35,983 adding 'tests/test_data/test_bAP.ca_ais.cai.csv' 2023-10-30T14:28:35,987 adding 'tests/test_data/test_bAP.ca_prox_apic.cai.csv' 2023-10-30T14:28:35,990 adding 'tests/test_data/test_bAP.ca_prox_basal.cai.csv' 2023-10-30T14:28:35,994 adding 'tests/test_data/test_bAP.ca_soma.cai.csv' 2023-10-30T14:28:35,997 adding 'tests/test_data/test_bAP.dend1.v.csv' 2023-10-30T14:28:36,000 adding 'tests/test_data/test_bAP.dend2.v.csv' 2023-10-30T14:28:36,004 adding 'tests/test_data/test_bAP.soma.v.csv' 2023-10-30T14:28:36,006 adding 'tests/test_data/test_features.json' 2023-10-30T14:28:36,007 adding 'tests/test_data/test_mechanisms.json' 2023-10-30T14:28:36,008 adding 'tests/test_data/test_parameters.json' 2023-10-30T14:28:36,010 adding 'tests/test_data/test_protocols.json' 2023-10-30T14:28:36,011 adding 'tests/test_data/test_recipes.json' 2023-10-30T14:28:36,012 adding 'tests/test_data/config/config_dict.json' 2023-10-30T14:28:36,014 adding 'tests/test_data/config/features.json' 2023-10-30T14:28:36,016 adding 'tests/test_data/config/params.json' 2023-10-30T14:28:36,017 adding 'tests/test_data/config/params_restart.json' 2023-10-30T14:28:36,018 adding 'tests/test_data/config/protocols.json' 2023-10-30T14:28:36,019 adding 'tests/test_data/config/recipes.json' 2023-10-30T14:28:36,020 adding 'tests/test_data/config/recipes_restart.json' 2023-10-30T14:28:36,410 adding 'tests/test_data/ephys_data/C010600C1-MT-C1.nwb' 2023-10-30T14:28:36,454 adding 'tests/test_data/mechanisms/CaDynamics_DC0.mod' 2023-10-30T14:28:36,455 adding 'tests/test_data/mechanisms/Ca_HVA2.mod' 2023-10-30T14:28:36,456 adding 'tests/test_data/mechanisms/Ca_LVAst.mod' 2023-10-30T14:28:36,457 adding 'tests/test_data/mechanisms/Ih.mod' 2023-10-30T14:28:36,459 adding 'tests/test_data/mechanisms/K_Pst.mod' 2023-10-30T14:28:36,460 adding 'tests/test_data/mechanisms/K_Tst.mod' 2023-10-30T14:28:36,461 adding 'tests/test_data/mechanisms/NaTg.mod' 2023-10-30T14:28:36,462 adding 'tests/test_data/mechanisms/Nap_Et2.mod' 2023-10-30T14:28:36,464 adding 'tests/test_data/mechanisms/SK_E2.mod' 2023-10-30T14:28:36,465 adding 'tests/test_data/mechanisms/SKv3_1.mod' 2023-10-30T14:28:36,538 adding 'tests/test_data/morphology/C060114A5.asc' 2023-10-30T14:28:36,545 adding 'tests/test_models/__init__.py' 2023-10-30T14:28:36,546 adding 'tests/test_models/dummycells.py' 2023-10-30T14:28:36,548 adding 'tests/unit_tests/__init__.py' 2023-10-30T14:28:36,551 adding 'tests/unit_tests/test_ecodes.py' 2023-10-30T14:28:36,552 adding 'tests/unit_tests/test_emodel_pipeline.py' 2023-10-30T14:28:36,554 adding 'tests/unit_tests/test_emodelmetadata.py' 2023-10-30T14:28:36,555 adding 'tests/unit_tests/test_evaluator.py' 2023-10-30T14:28:36,557 adding 'tests/unit_tests/test_fitness_calculator_configuration.py' 2023-10-30T14:28:36,558 adding 'tests/unit_tests/test_local_access_point.py' 2023-10-30T14:28:36,560 adding 'tests/unit_tests/test_model.py' 2023-10-30T14:28:36,561 adding 'tests/unit_tests/test_model_parameters_configuration.py' 2023-10-30T14:28:36,563 adding 'tests/unit_tests/test_optimisation.py' 2023-10-30T14:28:36,564 adding 'tests/unit_tests/test_plotting.py' 2023-10-30T14:28:36,566 adding 'tests/unit_tests/test_targets_configuration.py' 2023-10-30T14:28:36,567 adding 'tests/unit_tests/test_tools.py' 2023-10-30T14:28:36,569 adding 'tests/unit_tests/test_validation_functions.py' 2023-10-30T14:28:36,570 adding 'bluepyemodel-0.0.57.dist-info/AUTHORS.txt' 2023-10-30T14:28:36,572 adding 'bluepyemodel-0.0.57.dist-info/COPYING' 2023-10-30T14:28:36,573 adding 'bluepyemodel-0.0.57.dist-info/LICENSE.txt' 2023-10-30T14:28:36,575 adding 'bluepyemodel-0.0.57.dist-info/METADATA' 2023-10-30T14:28:36,576 adding 'bluepyemodel-0.0.57.dist-info/WHEEL' 2023-10-30T14:28:36,577 adding 'bluepyemodel-0.0.57.dist-info/top_level.txt' 2023-10-30T14:28:36,579 adding 'bluepyemodel-0.0.57.dist-info/RECORD' 2023-10-30T14:28:36,709 removing build/bdist.linux-armv7l/wheel 2023-10-30T14:28:36,904 Building wheel for bluepyemodel (setup.py): finished with status 'done' 2023-10-30T14:28:37,052 Created wheel for bluepyemodel: filename=bluepyemodel-0.0.57-py3-none-any.whl size=12439749 sha256=9ce160c2f35e997c3ad9d3f422420c4ea63817c98aeaa39cba8d4770078e0807 2023-10-30T14:28:37,053 Stored in directory: /tmp/pip-ephem-wheel-cache-tpwdv5au/wheels/1a/61/ba/c982abd2514e7ce390e74606d085fc7f153f766f8b05eeeea7 2023-10-30T14:28:37,074 Successfully built bluepyemodel 2023-10-30T14:28:37,388 Removed build tracker: '/tmp/pip-build-tracker-8nrla_jq'