2023-10-31T23:13:06,572 Created temporary directory: /tmp/pip-build-tracker-5a8eclz5 2023-10-31T23:13:06,574 Initialized build tracking at /tmp/pip-build-tracker-5a8eclz5 2023-10-31T23:13:06,574 Created build tracker: /tmp/pip-build-tracker-5a8eclz5 2023-10-31T23:13:06,574 Entered build tracker: /tmp/pip-build-tracker-5a8eclz5 2023-10-31T23:13:06,575 Created temporary directory: /tmp/pip-wheel-ped_jbht 2023-10-31T23:13:06,578 Created temporary directory: /tmp/pip-ephem-wheel-cache-3pj5noei 2023-10-31T23:13:06,600 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-10-31T23:13:06,604 2 location(s) to search for versions of sigprofilerassignment: 2023-10-31T23:13:06,604 * https://pypi.org/simple/sigprofilerassignment/ 2023-10-31T23:13:06,604 * https://www.piwheels.org/simple/sigprofilerassignment/ 2023-10-31T23:13:06,605 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2023-10-31T23:13:06,606 Getting page https://pypi.org/simple/sigprofilerassignment/ 2023-10-31T23:13:06,607 Found index url https://pypi.org/simple/ 2023-10-31T23:13:06,828 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2023-10-31T23:13:06,840 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,841 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2023-10-31T23:13:06,841 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,842 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2023-10-31T23:13:06,843 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,843 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2023-10-31T23:13:06,844 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,845 Found link https://files.pythonhosted.org/packages/79/c4/ed14da5d80f43e136c7638db1341dda950f510b9e283f3233a8aa7aabf32/SigProfilerAssignment-0.0.5.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.5 2023-10-31T23:13:06,846 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/66/ab/85f6ffb88701a726aa49666e007b52dbd3de21f036a6b8c2ebdeb9f1e462/SigProfilerAssignment-0.0.6-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,846 Found link 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https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,849 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2023-10-31T23:13:06,850 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/8d/ce/b3007d83ebaad0c5f16d68fc825dcce815d70081f135a950caf8b6a21972/SigProfilerAssignment-0.0.9-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,850 Found link https://files.pythonhosted.org/packages/5e/3a/5f620dd06f38b080d13d9c07487b1f927908e895c6d0078fd31e1774d819/SigProfilerAssignment-0.0.9.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.9 2023-10-31T23:13:06,851 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-10-31T23:13:06,853 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,854 Found link https://files.pythonhosted.org/packages/28/37/2ec84d1c1ad80c2a61214e735ae775d41a35ef5af4c79fbfc1a304003819/SigProfilerAssignment-0.0.12.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.12 2023-10-31T23:13:06,854 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/7a/8e/e93001206882013104acbe9fbc9ee58b4422d73e080574da3e317e6c48d4/SigProfilerAssignment-0.0.13-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,855 Found link 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2023-10-31T23:13:06,861 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/57/a1/2d3eb976254038c00cb1c0648a1c56f9e6ad8ad9c9cc93181fc2cc664856/SigProfilerAssignment-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,862 Found link https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2023-10-31T23:13:06,862 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/26/6d/e259131d359a7eafc0a850674198cdc19e78dc27d014678965d9b2435675/SigProfilerAssignment-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,863 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,874 Found link https://files.pythonhosted.org/packages/45/e2/196c5bb6ca652002f8211a4baf32159b6895b6c471879fff23e20f1bcb2a/SigProfilerAssignment-0.0.29.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.29 2023-10-31T23:13:06,874 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/36/4c/a81556468f296ef5cbc3c748db5eca42eb0e1efde79aa006e07ef7c2bbbd/SigProfilerAssignment-0.0.30-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,875 Found link https://files.pythonhosted.org/packages/61/57/2f345259de271d4379ca486cb26e5c417eec03f97c58d5daee1d91a43635/SigProfilerAssignment-0.0.30.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.30 2023-10-31T23:13:06,876 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-10-31T23:13:06,878 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/01/94/b600290dea721be9964bbd5123990f9fdac109538351321aeae2220d2f32/SigProfilerAssignment-0.0.33-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-10-31T23:13:06,879 Found link https://files.pythonhosted.org/packages/bd/c0/6258266e1cfa68cabaa2ea606b6ee74290d8dc70b1bb17ff7fac6ec85103/SigProfilerAssignment-0.0.33.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.33 2023-10-31T23:13:06,879 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-10-31T23:13:06,880 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2023-10-31T23:13:06,881 Found index url https://www.piwheels.org/simple/ 2023-10-31T23:13:07,281 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2023-10-31T23:13:07,297 Skipping link: No binaries permitted for 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-10-31T23:13:07,324 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-10-31T23:13:07,325 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2023-10-31T23:13:07,374 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2023-10-31T23:13:07,401 Collecting sigprofilerassignment==0.0.33 2023-10-31T23:13:07,403 Created temporary directory: /tmp/pip-unpack-6_0k00g8 2023-10-31T23:13:07,705 Downloading SigProfilerAssignment-0.0.33.tar.gz (13.8 MB) 2023-10-31T23:13:11,391 Added sigprofilerassignment==0.0.33 from https://files.pythonhosted.org/packages/bd/c0/6258266e1cfa68cabaa2ea606b6ee74290d8dc70b1bb17ff7fac6ec85103/SigProfilerAssignment-0.0.33.tar.gz to build tracker '/tmp/pip-build-tracker-5a8eclz5' 2023-10-31T23:13:11,394 Running setup.py (path:/tmp/pip-wheel-ped_jbht/sigprofilerassignment_557c3ca0bfc7489c926474d42427e91c/setup.py) egg_info for package sigprofilerassignment 2023-10-31T23:13:11,395 Created temporary directory: /tmp/pip-pip-egg-info-7bqmio1s 2023-10-31T23:13:11,395 Preparing metadata (setup.py): started 2023-10-31T23:13:11,397 Running command python setup.py egg_info 2023-10-31T23:13:12,402 running egg_info 2023-10-31T23:13:12,404 creating /tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info 2023-10-31T23:13:12,428 writing /tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/PKG-INFO 2023-10-31T23:13:12,432 writing dependency_links to /tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/dependency_links.txt 2023-10-31T23:13:12,434 writing requirements to /tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/requires.txt 2023-10-31T23:13:12,435 writing top-level names to /tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/top_level.txt 2023-10-31T23:13:12,436 writing manifest file '/tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-10-31T23:13:12,511 reading manifest file '/tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-10-31T23:13:12,512 reading manifest template 'MANIFEST.in' 2023-10-31T23:13:12,525 adding license file 'LICENSE.txt' 2023-10-31T23:13:12,531 writing manifest file '/tmp/pip-pip-egg-info-7bqmio1s/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-10-31T23:13:12,640 Preparing metadata (setup.py): finished with status 'done' 2023-10-31T23:13:12,644 Source in /tmp/pip-wheel-ped_jbht/sigprofilerassignment_557c3ca0bfc7489c926474d42427e91c has version 0.0.33, which satisfies requirement sigprofilerassignment==0.0.33 from https://files.pythonhosted.org/packages/bd/c0/6258266e1cfa68cabaa2ea606b6ee74290d8dc70b1bb17ff7fac6ec85103/SigProfilerAssignment-0.0.33.tar.gz 2023-10-31T23:13:12,645 Removed sigprofilerassignment==0.0.33 from https://files.pythonhosted.org/packages/bd/c0/6258266e1cfa68cabaa2ea606b6ee74290d8dc70b1bb17ff7fac6ec85103/SigProfilerAssignment-0.0.33.tar.gz from build tracker '/tmp/pip-build-tracker-5a8eclz5' 2023-10-31T23:13:12,650 Created temporary directory: /tmp/pip-unpack-p1244jqy 2023-10-31T23:13:12,651 Created temporary directory: /tmp/pip-unpack-5r1eh2gz 2023-10-31T23:13:12,672 Building wheels for collected packages: sigprofilerassignment 2023-10-31T23:13:12,676 Created temporary directory: /tmp/pip-wheel-8t7wd4m4 2023-10-31T23:13:12,677 Building wheel for sigprofilerassignment (setup.py): started 2023-10-31T23:13:12,678 Destination directory: /tmp/pip-wheel-8t7wd4m4 2023-10-31T23:13:12,679 Running command python setup.py bdist_wheel 2023-10-31T23:13:13,666 running bdist_wheel 2023-10-31T23:13:13,758 running build 2023-10-31T23:13:13,759 running build_py 2023-10-31T23:13:13,785 creating build 2023-10-31T23:13:13,786 creating build/lib 2023-10-31T23:13:13,787 creating build/lib/SigProfilerAssignment 2023-10-31T23:13:13,788 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2023-10-31T23:13:13,790 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2023-10-31T23:13:13,791 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2023-10-31T23:13:13,794 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2023-10-31T23:13:13,796 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2023-10-31T23:13:13,799 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2023-10-31T23:13:13,801 running egg_info 2023-10-31T23:13:13,856 writing SigProfilerAssignment.egg-info/PKG-INFO 2023-10-31T23:13:13,859 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2023-10-31T23:13:13,861 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2023-10-31T23:13:13,862 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2023-10-31T23:13:13,888 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-10-31T23:13:13,909 reading manifest template 'MANIFEST.in' 2023-10-31T23:13:13,918 adding license file 'LICENSE.txt' 2023-10-31T23:13:13,931 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-10-31T23:13:13,934 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2023-10-31T23:13:13,935 !! 2023-10-31T23:13:13,936 ******************************************************************************** 2023-10-31T23:13:13,936 ############################ 2023-10-31T23:13:13,937 # Package would be ignored # 2023-10-31T23:13:13,938 ############################ 2023-10-31T23:13:13,938 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2023-10-31T23:13:13,939 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:13,940 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:13,941 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2023-10-31T23:13:13,942 to the `packages` configuration field. 2023-10-31T23:13:13,943 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:13,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:13,944 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:13,945 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:13,947 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:13,948 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2023-10-31T23:13:13,948 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2023-10-31T23:13:13,949 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:13,949 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:13,950 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:13,951 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:13,952 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:13,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:13,954 even if it does not contain any `.py` files. 2023-10-31T23:13:13,955 On the other hand, currently there is no concept of package data 2023-10-31T23:13:13,956 directory, all directories are treated like packages. 2023-10-31T23:13:13,956 ******************************************************************************** 2023-10-31T23:13:13,957 !! 2023-10-31T23:13:13,957 check.warn(importable) 2023-10-31T23:13:13,957 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ExampleSample' is absent from the `packages` configuration. 2023-10-31T23:13:13,958 !! 2023-10-31T23:13:13,959 ******************************************************************************** 2023-10-31T23:13:13,959 ############################ 2023-10-31T23:13:13,960 # Package would be ignored # 2023-10-31T23:13:13,960 ############################ 2023-10-31T23:13:13,960 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ExampleSample' as an importable package[^1], 2023-10-31T23:13:13,961 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:13,961 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:13,962 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ExampleSample' is explicitly added 2023-10-31T23:13:13,962 to the `packages` configuration field. 2023-10-31T23:13:13,963 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:13,963 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:13,964 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:13,965 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:13,966 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:13,967 If you don't want 'SigProfilerAssignment.DecompositionPlots.ExampleSample' to be distributed and are 2023-10-31T23:13:13,967 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ExampleSample' via 2023-10-31T23:13:13,968 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:13,968 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:13,969 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:13,970 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:13,971 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:13,972 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:13,973 even if it does not contain any `.py` files. 2023-10-31T23:13:13,973 On the other hand, currently there is no concept of package data 2023-10-31T23:13:13,974 directory, all directories are treated like packages. 2023-10-31T23:13:13,974 ******************************************************************************** 2023-10-31T23:13:13,975 !! 2023-10-31T23:13:13,976 check.warn(importable) 2023-10-31T23:13:13,976 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2023-10-31T23:13:13,977 !! 2023-10-31T23:13:13,978 ******************************************************************************** 2023-10-31T23:13:13,978 ############################ 2023-10-31T23:13:13,979 # Package would be ignored # 2023-10-31T23:13:13,979 ############################ 2023-10-31T23:13:13,980 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2023-10-31T23:13:13,980 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:13,982 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:13,982 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2023-10-31T23:13:13,982 to the `packages` configuration field. 2023-10-31T23:13:13,983 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:13,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:13,984 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:13,984 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:13,985 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:13,986 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2023-10-31T23:13:13,986 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2023-10-31T23:13:13,987 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:13,987 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:13,987 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:13,988 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:13,989 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:13,991 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:13,991 even if it does not contain any `.py` files. 2023-10-31T23:13:13,992 On the other hand, currently there is no concept of package data 2023-10-31T23:13:13,993 directory, all directories are treated like packages. 2023-10-31T23:13:13,993 ******************************************************************************** 2023-10-31T23:13:13,994 !! 2023-10-31T23:13:13,995 check.warn(importable) 2023-10-31T23:13:13,995 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2023-10-31T23:13:13,996 !! 2023-10-31T23:13:13,997 ******************************************************************************** 2023-10-31T23:13:13,998 ############################ 2023-10-31T23:13:13,998 # Package would be ignored # 2023-10-31T23:13:13,999 ############################ 2023-10-31T23:13:13,999 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2023-10-31T23:13:14,000 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,000 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,001 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2023-10-31T23:13:14,001 to the `packages` configuration field. 2023-10-31T23:13:14,002 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,003 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,003 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,004 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,005 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,007 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2023-10-31T23:13:14,007 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2023-10-31T23:13:14,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,008 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,009 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,009 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,010 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,011 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,011 even if it does not contain any `.py` files. 2023-10-31T23:13:14,011 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,012 directory, all directories are treated like packages. 2023-10-31T23:13:14,012 ******************************************************************************** 2023-10-31T23:13:14,013 !! 2023-10-31T23:13:14,013 check.warn(importable) 2023-10-31T23:13:14,014 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2023-10-31T23:13:14,014 !! 2023-10-31T23:13:14,015 ******************************************************************************** 2023-10-31T23:13:14,015 ############################ 2023-10-31T23:13:14,015 # Package would be ignored # 2023-10-31T23:13:14,016 ############################ 2023-10-31T23:13:14,016 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2023-10-31T23:13:14,017 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,018 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,019 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2023-10-31T23:13:14,019 to the `packages` configuration field. 2023-10-31T23:13:14,020 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,021 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,022 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,024 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2023-10-31T23:13:14,025 already explicitly excluding 'SigProfilerAssignment.data' via 2023-10-31T23:13:14,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,026 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,027 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,029 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,030 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,031 even if it does not contain any `.py` files. 2023-10-31T23:13:14,031 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,032 directory, all directories are treated like packages. 2023-10-31T23:13:14,033 ******************************************************************************** 2023-10-31T23:13:14,034 !! 2023-10-31T23:13:14,035 check.warn(importable) 2023-10-31T23:13:14,035 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Input_scenario_8' is absent from the `packages` configuration. 2023-10-31T23:13:14,035 !! 2023-10-31T23:13:14,036 ******************************************************************************** 2023-10-31T23:13:14,036 ############################ 2023-10-31T23:13:14,036 # Package would be ignored # 2023-10-31T23:13:14,037 ############################ 2023-10-31T23:13:14,037 Python recognizes 'SigProfilerAssignment.data.Examples.Input_scenario_8' as an importable package[^1], 2023-10-31T23:13:14,037 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,038 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,038 package, please make sure that 'SigProfilerAssignment.data.Examples.Input_scenario_8' is explicitly added 2023-10-31T23:13:14,039 to the `packages` configuration field. 2023-10-31T23:13:14,039 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,040 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,040 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,041 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,042 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,043 If you don't want 'SigProfilerAssignment.data.Examples.Input_scenario_8' to be distributed and are 2023-10-31T23:13:14,043 already explicitly excluding 'SigProfilerAssignment.data.Examples.Input_scenario_8' via 2023-10-31T23:13:14,044 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,044 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,045 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,046 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,047 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,049 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,049 even if it does not contain any `.py` files. 2023-10-31T23:13:14,049 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,050 directory, all directories are treated like packages. 2023-10-31T23:13:14,051 ******************************************************************************** 2023-10-31T23:13:14,051 !! 2023-10-31T23:13:14,052 check.warn(importable) 2023-10-31T23:13:14,052 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8' is absent from the `packages` configuration. 2023-10-31T23:13:14,053 !! 2023-10-31T23:13:14,054 ******************************************************************************** 2023-10-31T23:13:14,054 ############################ 2023-10-31T23:13:14,054 # Package would be ignored # 2023-10-31T23:13:14,055 ############################ 2023-10-31T23:13:14,055 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8' as an importable package[^1], 2023-10-31T23:13:14,056 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,057 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,057 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8' is explicitly added 2023-10-31T23:13:14,058 to the `packages` configuration field. 2023-10-31T23:13:14,059 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,060 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,060 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,061 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,061 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,062 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8' to be distributed and are 2023-10-31T23:13:14,062 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8' via 2023-10-31T23:13:14,063 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,063 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,063 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,064 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,065 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,066 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,066 even if it does not contain any `.py` files. 2023-10-31T23:13:14,067 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,067 directory, all directories are treated like packages. 2023-10-31T23:13:14,067 ******************************************************************************** 2023-10-31T23:13:14,068 !! 2023-10-31T23:13:14,069 check.warn(importable) 2023-10-31T23:13:14,070 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96' is absent from the `packages` configuration. 2023-10-31T23:13:14,070 !! 2023-10-31T23:13:14,071 ******************************************************************************** 2023-10-31T23:13:14,072 ############################ 2023-10-31T23:13:14,072 # Package would be ignored # 2023-10-31T23:13:14,073 ############################ 2023-10-31T23:13:14,073 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96' as an importable package[^1], 2023-10-31T23:13:14,074 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,075 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,075 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96' is explicitly added 2023-10-31T23:13:14,076 to the `packages` configuration field. 2023-10-31T23:13:14,077 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,077 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,078 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,078 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,079 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,080 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96' to be distributed and are 2023-10-31T23:13:14,081 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96' via 2023-10-31T23:13:14,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,082 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,082 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,083 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,085 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,085 even if it does not contain any `.py` files. 2023-10-31T23:13:14,086 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,086 directory, all directories are treated like packages. 2023-10-31T23:13:14,086 ******************************************************************************** 2023-10-31T23:13:14,087 !! 2023-10-31T23:13:14,087 check.warn(importable) 2023-10-31T23:13:14,088 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,088 !! 2023-10-31T23:13:14,089 ******************************************************************************** 2023-10-31T23:13:14,089 ############################ 2023-10-31T23:13:14,090 # Package would be ignored # 2023-10-31T23:13:14,090 ############################ 2023-10-31T23:13:14,090 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Activities' as an importable package[^1], 2023-10-31T23:13:14,091 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,092 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,092 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Activities' is explicitly added 2023-10-31T23:13:14,093 to the `packages` configuration field. 2023-10-31T23:13:14,094 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,095 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,095 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,096 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,098 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,099 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Activities' to be distributed and are 2023-10-31T23:13:14,099 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Activities' via 2023-10-31T23:13:14,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,101 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,101 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,102 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,103 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,105 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,105 even if it does not contain any `.py` files. 2023-10-31T23:13:14,106 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,106 directory, all directories are treated like packages. 2023-10-31T23:13:14,107 ******************************************************************************** 2023-10-31T23:13:14,108 !! 2023-10-31T23:13:14,108 check.warn(importable) 2023-10-31T23:13:14,109 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,109 !! 2023-10-31T23:13:14,110 ******************************************************************************** 2023-10-31T23:13:14,110 ############################ 2023-10-31T23:13:14,110 # Package would be ignored # 2023-10-31T23:13:14,111 ############################ 2023-10-31T23:13:14,111 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Signatures' as an importable package[^1], 2023-10-31T23:13:14,111 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,112 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,112 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Signatures' is explicitly added 2023-10-31T23:13:14,113 to the `packages` configuration field. 2023-10-31T23:13:14,114 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,114 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,114 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,115 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,116 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,117 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Signatures' to be distributed and are 2023-10-31T23:13:14,118 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Signatures' via 2023-10-31T23:13:14,118 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,119 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,121 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,123 even if it does not contain any `.py` files. 2023-10-31T23:13:14,124 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,124 directory, all directories are treated like packages. 2023-10-31T23:13:14,125 ******************************************************************************** 2023-10-31T23:13:14,126 !! 2023-10-31T23:13:14,126 check.warn(importable) 2023-10-31T23:13:14,127 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,127 !! 2023-10-31T23:13:14,129 ******************************************************************************** 2023-10-31T23:13:14,129 ############################ 2023-10-31T23:13:14,130 # Package would be ignored # 2023-10-31T23:13:14,130 ############################ 2023-10-31T23:13:14,131 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,131 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,132 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,133 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Solution_Stats' is explicitly added 2023-10-31T23:13:14,133 to the `packages` configuration field. 2023-10-31T23:13:14,134 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,134 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,134 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,135 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,136 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,136 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,137 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_1_Signatures.Solution_Stats' via 2023-10-31T23:13:14,137 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,137 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,138 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,139 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,140 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,141 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,142 even if it does not contain any `.py` files. 2023-10-31T23:13:14,142 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,143 directory, all directories are treated like packages. 2023-10-31T23:13:14,143 ******************************************************************************** 2023-10-31T23:13:14,144 !! 2023-10-31T23:13:14,145 check.warn(importable) 2023-10-31T23:13:14,145 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,146 !! 2023-10-31T23:13:14,147 ******************************************************************************** 2023-10-31T23:13:14,147 ############################ 2023-10-31T23:13:14,148 # Package would be ignored # 2023-10-31T23:13:14,148 ############################ 2023-10-31T23:13:14,149 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Activities' as an importable package[^1], 2023-10-31T23:13:14,149 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,150 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,150 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Activities' is explicitly added 2023-10-31T23:13:14,151 to the `packages` configuration field. 2023-10-31T23:13:14,152 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,153 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,154 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,155 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,156 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Activities' to be distributed and are 2023-10-31T23:13:14,156 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Activities' via 2023-10-31T23:13:14,157 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,157 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,157 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,158 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,161 even if it does not contain any `.py` files. 2023-10-31T23:13:14,161 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,161 directory, all directories are treated like packages. 2023-10-31T23:13:14,162 ******************************************************************************** 2023-10-31T23:13:14,163 !! 2023-10-31T23:13:14,163 check.warn(importable) 2023-10-31T23:13:14,163 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,164 !! 2023-10-31T23:13:14,165 ******************************************************************************** 2023-10-31T23:13:14,165 ############################ 2023-10-31T23:13:14,166 # Package would be ignored # 2023-10-31T23:13:14,166 ############################ 2023-10-31T23:13:14,167 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Signatures' as an importable package[^1], 2023-10-31T23:13:14,168 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,169 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,169 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Signatures' is explicitly added 2023-10-31T23:13:14,170 to the `packages` configuration field. 2023-10-31T23:13:14,171 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,171 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,172 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,173 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,173 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,174 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Signatures' to be distributed and are 2023-10-31T23:13:14,175 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Signatures' via 2023-10-31T23:13:14,175 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,176 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,176 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,178 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,178 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,180 even if it does not contain any `.py` files. 2023-10-31T23:13:14,180 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,180 directory, all directories are treated like packages. 2023-10-31T23:13:14,181 ******************************************************************************** 2023-10-31T23:13:14,181 !! 2023-10-31T23:13:14,182 check.warn(importable) 2023-10-31T23:13:14,182 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,182 !! 2023-10-31T23:13:14,183 ******************************************************************************** 2023-10-31T23:13:14,183 ############################ 2023-10-31T23:13:14,184 # Package would be ignored # 2023-10-31T23:13:14,184 ############################ 2023-10-31T23:13:14,185 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,185 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,186 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,186 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Solution_Stats' is explicitly added 2023-10-31T23:13:14,187 to the `packages` configuration field. 2023-10-31T23:13:14,188 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,189 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,190 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,192 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,192 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_2_Signatures.Solution_Stats' via 2023-10-31T23:13:14,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,193 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,194 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,195 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,198 even if it does not contain any `.py` files. 2023-10-31T23:13:14,198 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,199 directory, all directories are treated like packages. 2023-10-31T23:13:14,199 ******************************************************************************** 2023-10-31T23:13:14,200 !! 2023-10-31T23:13:14,201 check.warn(importable) 2023-10-31T23:13:14,202 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,202 !! 2023-10-31T23:13:14,203 ******************************************************************************** 2023-10-31T23:13:14,203 ############################ 2023-10-31T23:13:14,204 # Package would be ignored # 2023-10-31T23:13:14,204 ############################ 2023-10-31T23:13:14,204 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Activities' as an importable package[^1], 2023-10-31T23:13:14,205 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,205 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,206 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Activities' is explicitly added 2023-10-31T23:13:14,206 to the `packages` configuration field. 2023-10-31T23:13:14,207 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,207 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,208 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,208 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,210 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Activities' to be distributed and are 2023-10-31T23:13:14,210 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Activities' via 2023-10-31T23:13:14,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,211 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,212 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,213 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,216 even if it does not contain any `.py` files. 2023-10-31T23:13:14,217 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,217 directory, all directories are treated like packages. 2023-10-31T23:13:14,218 ******************************************************************************** 2023-10-31T23:13:14,219 !! 2023-10-31T23:13:14,219 check.warn(importable) 2023-10-31T23:13:14,220 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,220 !! 2023-10-31T23:13:14,221 ******************************************************************************** 2023-10-31T23:13:14,222 ############################ 2023-10-31T23:13:14,222 # Package would be ignored # 2023-10-31T23:13:14,223 ############################ 2023-10-31T23:13:14,223 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Signatures' as an importable package[^1], 2023-10-31T23:13:14,224 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,225 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,226 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Signatures' is explicitly added 2023-10-31T23:13:14,226 to the `packages` configuration field. 2023-10-31T23:13:14,227 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,227 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,227 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,228 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,230 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Signatures' to be distributed and are 2023-10-31T23:13:14,230 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Signatures' via 2023-10-31T23:13:14,230 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,231 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,232 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,232 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,234 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,234 even if it does not contain any `.py` files. 2023-10-31T23:13:14,235 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,235 directory, all directories are treated like packages. 2023-10-31T23:13:14,236 ******************************************************************************** 2023-10-31T23:13:14,237 !! 2023-10-31T23:13:14,238 check.warn(importable) 2023-10-31T23:13:14,238 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,239 !! 2023-10-31T23:13:14,240 ******************************************************************************** 2023-10-31T23:13:14,240 ############################ 2023-10-31T23:13:14,241 # Package would be ignored # 2023-10-31T23:13:14,241 ############################ 2023-10-31T23:13:14,242 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,242 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,243 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,243 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Solution_Stats' is explicitly added 2023-10-31T23:13:14,244 to the `packages` configuration field. 2023-10-31T23:13:14,245 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,246 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,247 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,249 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,249 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,250 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_3_Signatures.Solution_Stats' via 2023-10-31T23:13:14,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,251 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,251 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,253 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,253 even if it does not contain any `.py` files. 2023-10-31T23:13:14,254 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,254 directory, all directories are treated like packages. 2023-10-31T23:13:14,254 ******************************************************************************** 2023-10-31T23:13:14,255 !! 2023-10-31T23:13:14,255 check.warn(importable) 2023-10-31T23:13:14,256 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,256 !! 2023-10-31T23:13:14,257 ******************************************************************************** 2023-10-31T23:13:14,258 ############################ 2023-10-31T23:13:14,258 # Package would be ignored # 2023-10-31T23:13:14,259 ############################ 2023-10-31T23:13:14,260 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Activities' as an importable package[^1], 2023-10-31T23:13:14,260 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,261 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,262 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Activities' is explicitly added 2023-10-31T23:13:14,262 to the `packages` configuration field. 2023-10-31T23:13:14,263 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,264 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,264 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,265 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,267 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Activities' to be distributed and are 2023-10-31T23:13:14,267 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Activities' via 2023-10-31T23:13:14,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,268 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,269 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,270 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,272 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,272 even if it does not contain any `.py` files. 2023-10-31T23:13:14,272 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,273 directory, all directories are treated like packages. 2023-10-31T23:13:14,273 ******************************************************************************** 2023-10-31T23:13:14,274 !! 2023-10-31T23:13:14,274 check.warn(importable) 2023-10-31T23:13:14,274 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,275 !! 2023-10-31T23:13:14,275 ******************************************************************************** 2023-10-31T23:13:14,276 ############################ 2023-10-31T23:13:14,276 # Package would be ignored # 2023-10-31T23:13:14,276 ############################ 2023-10-31T23:13:14,277 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Signatures' as an importable package[^1], 2023-10-31T23:13:14,277 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,278 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,279 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Signatures' is explicitly added 2023-10-31T23:13:14,279 to the `packages` configuration field. 2023-10-31T23:13:14,280 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,281 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,282 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,283 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,284 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,285 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Signatures' to be distributed and are 2023-10-31T23:13:14,285 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Signatures' via 2023-10-31T23:13:14,286 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,287 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,287 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,288 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,289 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,290 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,291 even if it does not contain any `.py` files. 2023-10-31T23:13:14,291 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,292 directory, all directories are treated like packages. 2023-10-31T23:13:14,292 ******************************************************************************** 2023-10-31T23:13:14,293 !! 2023-10-31T23:13:14,294 check.warn(importable) 2023-10-31T23:13:14,294 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,295 !! 2023-10-31T23:13:14,296 ******************************************************************************** 2023-10-31T23:13:14,296 ############################ 2023-10-31T23:13:14,297 # Package would be ignored # 2023-10-31T23:13:14,297 ############################ 2023-10-31T23:13:14,297 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,298 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,299 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,299 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Solution_Stats' is explicitly added 2023-10-31T23:13:14,299 to the `packages` configuration field. 2023-10-31T23:13:14,300 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,301 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,302 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,302 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,303 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,304 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_4_Signatures.Solution_Stats' via 2023-10-31T23:13:14,304 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,304 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,305 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,306 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,307 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,310 even if it does not contain any `.py` files. 2023-10-31T23:13:14,310 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,311 directory, all directories are treated like packages. 2023-10-31T23:13:14,311 ******************************************************************************** 2023-10-31T23:13:14,312 !! 2023-10-31T23:13:14,312 check.warn(importable) 2023-10-31T23:13:14,313 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,313 !! 2023-10-31T23:13:14,314 ******************************************************************************** 2023-10-31T23:13:14,315 ############################ 2023-10-31T23:13:14,315 # Package would be ignored # 2023-10-31T23:13:14,316 ############################ 2023-10-31T23:13:14,316 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Activities' as an importable package[^1], 2023-10-31T23:13:14,317 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,318 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,319 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Activities' is explicitly added 2023-10-31T23:13:14,319 to the `packages` configuration field. 2023-10-31T23:13:14,319 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,320 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,321 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,322 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Activities' to be distributed and are 2023-10-31T23:13:14,322 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Activities' via 2023-10-31T23:13:14,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,323 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,323 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,324 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,327 even if it does not contain any `.py` files. 2023-10-31T23:13:14,328 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,328 directory, all directories are treated like packages. 2023-10-31T23:13:14,329 ******************************************************************************** 2023-10-31T23:13:14,330 !! 2023-10-31T23:13:14,330 check.warn(importable) 2023-10-31T23:13:14,331 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,331 !! 2023-10-31T23:13:14,333 ******************************************************************************** 2023-10-31T23:13:14,333 ############################ 2023-10-31T23:13:14,333 # Package would be ignored # 2023-10-31T23:13:14,334 ############################ 2023-10-31T23:13:14,334 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Signatures' as an importable package[^1], 2023-10-31T23:13:14,335 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,336 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,336 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Signatures' is explicitly added 2023-10-31T23:13:14,337 to the `packages` configuration field. 2023-10-31T23:13:14,338 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,339 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,340 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,341 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,342 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Signatures' to be distributed and are 2023-10-31T23:13:14,343 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Signatures' via 2023-10-31T23:13:14,343 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,343 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,344 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,345 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,347 even if it does not contain any `.py` files. 2023-10-31T23:13:14,347 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,348 directory, all directories are treated like packages. 2023-10-31T23:13:14,348 ******************************************************************************** 2023-10-31T23:13:14,349 !! 2023-10-31T23:13:14,349 check.warn(importable) 2023-10-31T23:13:14,350 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,350 !! 2023-10-31T23:13:14,351 ******************************************************************************** 2023-10-31T23:13:14,352 ############################ 2023-10-31T23:13:14,352 # Package would be ignored # 2023-10-31T23:13:14,353 ############################ 2023-10-31T23:13:14,353 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,354 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,355 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,356 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Solution_Stats' is explicitly added 2023-10-31T23:13:14,356 to the `packages` configuration field. 2023-10-31T23:13:14,357 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,358 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,359 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,360 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,361 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,362 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_5_Signatures.Solution_Stats' via 2023-10-31T23:13:14,362 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,363 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,363 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,364 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,366 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,367 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,367 even if it does not contain any `.py` files. 2023-10-31T23:13:14,368 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,368 directory, all directories are treated like packages. 2023-10-31T23:13:14,369 ******************************************************************************** 2023-10-31T23:13:14,369 !! 2023-10-31T23:13:14,370 check.warn(importable) 2023-10-31T23:13:14,370 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,371 !! 2023-10-31T23:13:14,372 ******************************************************************************** 2023-10-31T23:13:14,372 ############################ 2023-10-31T23:13:14,372 # Package would be ignored # 2023-10-31T23:13:14,373 ############################ 2023-10-31T23:13:14,373 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Activities' as an importable package[^1], 2023-10-31T23:13:14,374 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,375 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,375 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Activities' is explicitly added 2023-10-31T23:13:14,376 to the `packages` configuration field. 2023-10-31T23:13:14,377 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,378 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,379 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,380 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,381 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Activities' to be distributed and are 2023-10-31T23:13:14,381 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Activities' via 2023-10-31T23:13:14,382 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,382 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,383 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,384 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,386 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,388 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,389 even if it does not contain any `.py` files. 2023-10-31T23:13:14,389 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,390 directory, all directories are treated like packages. 2023-10-31T23:13:14,390 ******************************************************************************** 2023-10-31T23:13:14,391 !! 2023-10-31T23:13:14,392 check.warn(importable) 2023-10-31T23:13:14,392 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,393 !! 2023-10-31T23:13:14,394 ******************************************************************************** 2023-10-31T23:13:14,394 ############################ 2023-10-31T23:13:14,395 # Package would be ignored # 2023-10-31T23:13:14,395 ############################ 2023-10-31T23:13:14,396 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Signatures' as an importable package[^1], 2023-10-31T23:13:14,396 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,397 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,397 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Signatures' is explicitly added 2023-10-31T23:13:14,398 to the `packages` configuration field. 2023-10-31T23:13:14,399 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,399 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,400 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,401 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,401 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,403 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Signatures' to be distributed and are 2023-10-31T23:13:14,403 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Signatures' via 2023-10-31T23:13:14,404 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,404 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,404 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,405 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,408 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,409 even if it does not contain any `.py` files. 2023-10-31T23:13:14,409 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,410 directory, all directories are treated like packages. 2023-10-31T23:13:14,410 ******************************************************************************** 2023-10-31T23:13:14,411 !! 2023-10-31T23:13:14,412 check.warn(importable) 2023-10-31T23:13:14,412 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,413 !! 2023-10-31T23:13:14,414 ******************************************************************************** 2023-10-31T23:13:14,414 ############################ 2023-10-31T23:13:14,415 # Package would be ignored # 2023-10-31T23:13:14,415 ############################ 2023-10-31T23:13:14,418 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,418 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,419 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,420 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Solution_Stats' is explicitly added 2023-10-31T23:13:14,421 to the `packages` configuration field. 2023-10-31T23:13:14,422 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,423 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,424 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,425 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,426 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,427 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.All_Solutions.SBS96_6_Signatures.Solution_Stats' via 2023-10-31T23:13:14,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,429 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,430 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,431 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,433 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,433 even if it does not contain any `.py` files. 2023-10-31T23:13:14,433 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,434 directory, all directories are treated like packages. 2023-10-31T23:13:14,435 ******************************************************************************** 2023-10-31T23:13:14,436 !! 2023-10-31T23:13:14,437 check.warn(importable) 2023-10-31T23:13:14,437 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution' is absent from the `packages` configuration. 2023-10-31T23:13:14,438 !! 2023-10-31T23:13:14,439 ******************************************************************************** 2023-10-31T23:13:14,439 ############################ 2023-10-31T23:13:14,440 # Package would be ignored # 2023-10-31T23:13:14,440 ############################ 2023-10-31T23:13:14,441 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution' as an importable package[^1], 2023-10-31T23:13:14,441 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,442 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,443 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution' is explicitly added 2023-10-31T23:13:14,443 to the `packages` configuration field. 2023-10-31T23:13:14,447 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,449 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,453 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,456 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution' to be distributed and are 2023-10-31T23:13:14,457 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution' via 2023-10-31T23:13:14,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,458 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,458 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,459 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,461 even if it does not contain any `.py` files. 2023-10-31T23:13:14,462 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,462 directory, all directories are treated like packages. 2023-10-31T23:13:14,463 ******************************************************************************** 2023-10-31T23:13:14,464 !! 2023-10-31T23:13:14,464 check.warn(importable) 2023-10-31T23:13:14,465 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Activities' is absent from the `packages` configuration. 2023-10-31T23:13:14,465 !! 2023-10-31T23:13:14,466 ******************************************************************************** 2023-10-31T23:13:14,466 ############################ 2023-10-31T23:13:14,467 # Package would be ignored # 2023-10-31T23:13:14,467 ############################ 2023-10-31T23:13:14,469 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Activities' as an importable package[^1], 2023-10-31T23:13:14,470 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,471 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,472 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Activities' is explicitly added 2023-10-31T23:13:14,474 to the `packages` configuration field. 2023-10-31T23:13:14,478 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,478 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,479 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,480 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,482 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Activities' to be distributed and are 2023-10-31T23:13:14,482 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Activities' via 2023-10-31T23:13:14,483 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,483 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,484 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,485 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,486 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,488 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,488 even if it does not contain any `.py` files. 2023-10-31T23:13:14,488 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,489 directory, all directories are treated like packages. 2023-10-31T23:13:14,490 ******************************************************************************** 2023-10-31T23:13:14,490 !! 2023-10-31T23:13:14,491 check.warn(importable) 2023-10-31T23:13:14,491 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Signatures' is absent from the `packages` configuration. 2023-10-31T23:13:14,492 !! 2023-10-31T23:13:14,493 ******************************************************************************** 2023-10-31T23:13:14,494 ############################ 2023-10-31T23:13:14,494 # Package would be ignored # 2023-10-31T23:13:14,494 ############################ 2023-10-31T23:13:14,495 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Signatures' as an importable package[^1], 2023-10-31T23:13:14,495 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,496 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,497 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Signatures' is explicitly added 2023-10-31T23:13:14,497 to the `packages` configuration field. 2023-10-31T23:13:14,498 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,499 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,501 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,502 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,503 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Signatures' to be distributed and are 2023-10-31T23:13:14,504 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Signatures' via 2023-10-31T23:13:14,504 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,505 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,505 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,507 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,508 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,510 even if it does not contain any `.py` files. 2023-10-31T23:13:14,511 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,512 directory, all directories are treated like packages. 2023-10-31T23:13:14,512 ******************************************************************************** 2023-10-31T23:13:14,513 !! 2023-10-31T23:13:14,514 check.warn(importable) 2023-10-31T23:13:14,514 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Solution_Stats' is absent from the `packages` configuration. 2023-10-31T23:13:14,515 !! 2023-10-31T23:13:14,516 ******************************************************************************** 2023-10-31T23:13:14,516 ############################ 2023-10-31T23:13:14,517 # Package would be ignored # 2023-10-31T23:13:14,517 ############################ 2023-10-31T23:13:14,523 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Solution_Stats' as an importable package[^1], 2023-10-31T23:13:14,524 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,525 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,525 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Solution_Stats' is explicitly added 2023-10-31T23:13:14,526 to the `packages` configuration field. 2023-10-31T23:13:14,527 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,528 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,528 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,529 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,530 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,531 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Solution_Stats' to be distributed and are 2023-10-31T23:13:14,532 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution.COSMIC_SBS96_Decomposed_Solution.Solution_Stats' via 2023-10-31T23:13:14,532 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,533 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,534 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,535 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,537 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,537 even if it does not contain any `.py` files. 2023-10-31T23:13:14,538 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,538 directory, all directories are treated like packages. 2023-10-31T23:13:14,539 ******************************************************************************** 2023-10-31T23:13:14,540 !! 2023-10-31T23:13:14,540 check.warn(importable) 2023-10-31T23:13:14,541 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution' is absent from the `packages` configuration. 2023-10-31T23:13:14,541 !! 2023-10-31T23:13:14,542 ******************************************************************************** 2023-10-31T23:13:14,543 ############################ 2023-10-31T23:13:14,543 # Package would be ignored # 2023-10-31T23:13:14,544 ############################ 2023-10-31T23:13:14,544 Python recognizes 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution' as an importable package[^1], 2023-10-31T23:13:14,545 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,547 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,548 package, please make sure that 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution' is explicitly added 2023-10-31T23:13:14,548 to the `packages` configuration field. 2023-10-31T23:13:14,549 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,550 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,551 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,554 If you don't want 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution' to be distributed and are 2023-10-31T23:13:14,554 already explicitly excluding 'SigProfilerAssignment.data.Examples.Results_scenario_8.SBS96.Suggested_Solution' via 2023-10-31T23:13:14,554 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,555 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,555 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,556 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,557 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,558 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,559 even if it does not contain any `.py` files. 2023-10-31T23:13:14,560 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,560 directory, all directories are treated like packages. 2023-10-31T23:13:14,560 ******************************************************************************** 2023-10-31T23:13:14,561 !! 2023-10-31T23:13:14,562 check.warn(importable) 2023-10-31T23:13:14,563 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2023-10-31T23:13:14,563 !! 2023-10-31T23:13:14,564 ******************************************************************************** 2023-10-31T23:13:14,565 ############################ 2023-10-31T23:13:14,565 # Package would be ignored # 2023-10-31T23:13:14,566 ############################ 2023-10-31T23:13:14,566 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2023-10-31T23:13:14,567 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,568 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,569 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2023-10-31T23:13:14,569 to the `packages` configuration field. 2023-10-31T23:13:14,570 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,571 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,572 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,573 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,574 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2023-10-31T23:13:14,575 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2023-10-31T23:13:14,576 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,576 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,577 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,577 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,580 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,580 even if it does not contain any `.py` files. 2023-10-31T23:13:14,580 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,581 directory, all directories are treated like packages. 2023-10-31T23:13:14,581 ******************************************************************************** 2023-10-31T23:13:14,583 !! 2023-10-31T23:13:14,583 check.warn(importable) 2023-10-31T23:13:14,583 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2023-10-31T23:13:14,584 !! 2023-10-31T23:13:14,585 ******************************************************************************** 2023-10-31T23:13:14,585 ############################ 2023-10-31T23:13:14,585 # Package would be ignored # 2023-10-31T23:13:14,586 ############################ 2023-10-31T23:13:14,586 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2023-10-31T23:13:14,587 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,588 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,588 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2023-10-31T23:13:14,589 to the `packages` configuration field. 2023-10-31T23:13:14,590 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,591 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,592 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,593 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,594 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2023-10-31T23:13:14,595 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2023-10-31T23:13:14,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,596 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,596 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,598 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,599 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,601 even if it does not contain any `.py` files. 2023-10-31T23:13:14,602 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,602 directory, all directories are treated like packages. 2023-10-31T23:13:14,603 ******************************************************************************** 2023-10-31T23:13:14,604 !! 2023-10-31T23:13:14,604 check.warn(importable) 2023-10-31T23:13:14,606 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2023-10-31T23:13:14,606 !! 2023-10-31T23:13:14,607 ******************************************************************************** 2023-10-31T23:13:14,607 ############################ 2023-10-31T23:13:14,608 # Package would be ignored # 2023-10-31T23:13:14,608 ############################ 2023-10-31T23:13:14,609 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2023-10-31T23:13:14,609 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,610 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,611 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2023-10-31T23:13:14,611 to the `packages` configuration field. 2023-10-31T23:13:14,612 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,612 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,613 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,614 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,615 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2023-10-31T23:13:14,616 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2023-10-31T23:13:14,616 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,617 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,617 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,618 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,621 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,622 even if it does not contain any `.py` files. 2023-10-31T23:13:14,622 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,623 directory, all directories are treated like packages. 2023-10-31T23:13:14,623 ******************************************************************************** 2023-10-31T23:13:14,624 !! 2023-10-31T23:13:14,625 check.warn(importable) 2023-10-31T23:13:14,625 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2023-10-31T23:13:14,626 !! 2023-10-31T23:13:14,627 ******************************************************************************** 2023-10-31T23:13:14,627 ############################ 2023-10-31T23:13:14,628 # Package would be ignored # 2023-10-31T23:13:14,628 ############################ 2023-10-31T23:13:14,629 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2023-10-31T23:13:14,629 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,631 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,631 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2023-10-31T23:13:14,632 to the `packages` configuration field. 2023-10-31T23:13:14,633 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,633 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,634 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,635 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,636 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,636 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2023-10-31T23:13:14,637 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2023-10-31T23:13:14,637 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,638 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,638 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,639 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,640 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,642 even if it does not contain any `.py` files. 2023-10-31T23:13:14,642 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,643 directory, all directories are treated like packages. 2023-10-31T23:13:14,644 ******************************************************************************** 2023-10-31T23:13:14,645 !! 2023-10-31T23:13:14,645 check.warn(importable) 2023-10-31T23:13:14,646 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2023-10-31T23:13:14,646 !! 2023-10-31T23:13:14,647 ******************************************************************************** 2023-10-31T23:13:14,648 ############################ 2023-10-31T23:13:14,648 # Package would be ignored # 2023-10-31T23:13:14,649 ############################ 2023-10-31T23:13:14,649 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2023-10-31T23:13:14,650 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,651 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,652 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2023-10-31T23:13:14,653 to the `packages` configuration field. 2023-10-31T23:13:14,654 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,654 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,655 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,656 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,657 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,658 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2023-10-31T23:13:14,659 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2023-10-31T23:13:14,659 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,660 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,661 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,662 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,663 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,664 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,664 even if it does not contain any `.py` files. 2023-10-31T23:13:14,665 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,665 directory, all directories are treated like packages. 2023-10-31T23:13:14,666 ******************************************************************************** 2023-10-31T23:13:14,667 !! 2023-10-31T23:13:14,667 check.warn(importable) 2023-10-31T23:13:14,668 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2023-10-31T23:13:14,669 !! 2023-10-31T23:13:14,671 ******************************************************************************** 2023-10-31T23:13:14,671 ############################ 2023-10-31T23:13:14,672 # Package would be ignored # 2023-10-31T23:13:14,673 ############################ 2023-10-31T23:13:14,673 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2023-10-31T23:13:14,673 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,674 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,675 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2023-10-31T23:13:14,676 to the `packages` configuration field. 2023-10-31T23:13:14,678 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,678 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,679 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,680 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,681 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,682 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2023-10-31T23:13:14,682 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2023-10-31T23:13:14,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,684 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,686 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,690 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,691 even if it does not contain any `.py` files. 2023-10-31T23:13:14,692 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,692 directory, all directories are treated like packages. 2023-10-31T23:13:14,693 ******************************************************************************** 2023-10-31T23:13:14,694 !! 2023-10-31T23:13:14,694 check.warn(importable) 2023-10-31T23:13:14,695 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2023-10-31T23:13:14,695 !! 2023-10-31T23:13:14,697 ******************************************************************************** 2023-10-31T23:13:14,697 ############################ 2023-10-31T23:13:14,698 # Package would be ignored # 2023-10-31T23:13:14,698 ############################ 2023-10-31T23:13:14,699 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2023-10-31T23:13:14,699 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,700 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,701 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2023-10-31T23:13:14,701 to the `packages` configuration field. 2023-10-31T23:13:14,702 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,703 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,704 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,706 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2023-10-31T23:13:14,706 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2023-10-31T23:13:14,707 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,707 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,708 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,709 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,710 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,711 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,712 even if it does not contain any `.py` files. 2023-10-31T23:13:14,712 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,712 directory, all directories are treated like packages. 2023-10-31T23:13:14,713 ******************************************************************************** 2023-10-31T23:13:14,714 !! 2023-10-31T23:13:14,714 check.warn(importable) 2023-10-31T23:13:14,715 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2023-10-31T23:13:14,715 !! 2023-10-31T23:13:14,717 ******************************************************************************** 2023-10-31T23:13:14,717 ############################ 2023-10-31T23:13:14,718 # Package would be ignored # 2023-10-31T23:13:14,718 ############################ 2023-10-31T23:13:14,718 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2023-10-31T23:13:14,719 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,720 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,721 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2023-10-31T23:13:14,721 to the `packages` configuration field. 2023-10-31T23:13:14,722 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,723 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,724 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,725 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,727 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2023-10-31T23:13:14,728 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2023-10-31T23:13:14,728 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,728 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,729 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,730 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,733 even if it does not contain any `.py` files. 2023-10-31T23:13:14,733 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,734 directory, all directories are treated like packages. 2023-10-31T23:13:14,734 ******************************************************************************** 2023-10-31T23:13:14,735 !! 2023-10-31T23:13:14,736 check.warn(importable) 2023-10-31T23:13:14,737 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'SigProfilerAssignment.figures' is absent from the `packages` configuration. 2023-10-31T23:13:14,737 !! 2023-10-31T23:13:14,739 ******************************************************************************** 2023-10-31T23:13:14,739 ############################ 2023-10-31T23:13:14,741 # Package would be ignored # 2023-10-31T23:13:14,742 ############################ 2023-10-31T23:13:14,742 Python recognizes 'SigProfilerAssignment.figures' as an importable package[^1], 2023-10-31T23:13:14,743 but it is absent from setuptools' `packages` configuration. 2023-10-31T23:13:14,744 This leads to an ambiguous overall configuration. If you want to distribute this 2023-10-31T23:13:14,745 package, please make sure that 'SigProfilerAssignment.figures' is explicitly added 2023-10-31T23:13:14,746 to the `packages` configuration field. 2023-10-31T23:13:14,747 Alternatively, you can also rely on setuptools' discovery methods 2023-10-31T23:13:14,748 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-10-31T23:13:14,749 instead of `find_packages(...)`/`find:`). 2023-10-31T23:13:14,750 You can read more about "package discovery" on setuptools documentation page: 2023-10-31T23:13:14,751 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-10-31T23:13:14,752 If you don't want 'SigProfilerAssignment.figures' to be distributed and are 2023-10-31T23:13:14,753 already explicitly excluding 'SigProfilerAssignment.figures' via 2023-10-31T23:13:14,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-10-31T23:13:14,754 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-10-31T23:13:14,754 combination with a more fine grained `package-data` configuration. 2023-10-31T23:13:14,756 You can read more about "package data files" on setuptools documentation page: 2023-10-31T23:13:14,757 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-10-31T23:13:14,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-10-31T23:13:14,760 even if it does not contain any `.py` files. 2023-10-31T23:13:14,760 On the other hand, currently there is no concept of package data 2023-10-31T23:13:14,761 directory, all directories are treated like packages. 2023-10-31T23:13:14,761 ******************************************************************************** 2023-10-31T23:13:14,762 !! 2023-10-31T23:13:14,763 check.warn(importable) 2023-10-31T23:13:14,764 creating build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,764 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,764 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,765 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,765 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,766 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,766 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,767 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,767 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:14,768 creating build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,768 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/CNV48_De-Novo_Signatures.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,769 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_CNV48_Signatures.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,769 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_DBS78_Signatures.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,770 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_ID83_Signatures.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,771 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_SBS288_Signatures.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,771 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_DINUC.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,772 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_INDEL.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,772 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS1536.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,773 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS288.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,773 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS96.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,774 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS1536.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,775 copying SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS96.txt -> build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:14,775 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-10-31T23:13:14,776 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-10-31T23:13:14,777 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-10-31T23:13:14,777 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-10-31T23:13:14,778 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-10-31T23:13:14,778 creating build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,780 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,781 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,781 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,782 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,782 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,783 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,783 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,784 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,785 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,785 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,786 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2023-10-31T23:13:14,786 creating build/lib/SigProfilerAssignment/data/Examples 2023-10-31T23:13:14,787 creating build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:14,788 copying SigProfilerAssignment/data/Examples/Input_scenario_8/Samples.txt -> build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:14,788 copying SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.catalog.csv -> build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:14,789 copying SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.exposures.csv -> build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:14,790 copying SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.sigs.csv -> build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:14,790 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8 2023-10-31T23:13:14,791 copying SigProfilerAssignment/data/Examples/Results_scenario_8/JOB_METADATA.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8 2023-10-31T23:13:14,792 copying SigProfilerAssignment/data/Examples/Results_scenario_8/Seeds.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8 2023-10-31T23:13:14,793 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:14,794 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_solutions_stat.csv -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:14,794 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/SBS96_selection_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:14,795 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Samples.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:14,795 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions 2023-10-31T23:13:14,796 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures 2023-10-31T23:13:14,796 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:14,796 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:14,797 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:14,798 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activity_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:14,799 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_TMB_NMF_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:14,799 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:14,799 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:14,800 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:14,801 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/Signature_plotSBS_96_plots_S1.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:14,801 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:14,802 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_NMF_Convergence_Information.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:14,802 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Samples_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:14,803 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Signatures_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:14,803 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures 2023-10-31T23:13:14,804 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:14,805 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:14,805 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:14,806 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activity_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:14,807 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_TMB_NMF_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:14,807 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:14,808 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:14,809 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:14,809 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/Signature_plotSBS_96_plots_S2.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:14,810 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:14,810 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_NMF_Convergence_Information.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:14,811 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Samples_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:14,812 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Signatures_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:14,813 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures 2023-10-31T23:13:14,813 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:14,814 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:14,815 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:14,816 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activity_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:14,823 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_TMB_NMF_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:14,824 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:14,827 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:14,830 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:14,835 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/Signature_plotSBS_96_plots_S3.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:14,838 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:14,838 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_NMF_Convergence_Information.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:14,839 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Samples_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:14,840 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Signatures_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:14,840 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures 2023-10-31T23:13:14,841 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:14,842 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:14,843 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:14,843 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activity_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:14,843 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_TMB_NMF_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:14,844 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:14,845 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:14,845 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:14,848 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/Signature_plotSBS_96_plots_S4.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:14,848 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:14,849 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_NMF_Convergence_Information.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:14,849 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Samples_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:14,850 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Signatures_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:14,850 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures 2023-10-31T23:13:14,851 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:14,852 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:14,852 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:14,853 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activity_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:14,853 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_TMB_NMF_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:14,854 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:14,854 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:14,855 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:14,856 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/Signature_plotSBS_96_plots_S5.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:14,857 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:14,857 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_NMF_Convergence_Information.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:14,858 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Samples_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:14,858 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Signatures_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:14,859 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures 2023-10-31T23:13:14,859 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:14,860 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:14,861 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:14,861 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activity_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:14,862 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_TMB_NMF_plot.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:14,863 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:14,863 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:14,864 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:14,865 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/Signature_plotSBS_96_plots_S6.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:14,865 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:14,866 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_NMF_Convergence_Information.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:14,867 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Samples_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:14,867 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Signatures_stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:14,868 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution 2023-10-31T23:13:14,868 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution 2023-10-31T23:13:14,869 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/De_Novo_map_to_COSMIC_SBS96.csv -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution 2023-10-31T23:13:14,869 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution 2023-10-31T23:13:14,870 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:14,870 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activities_refit.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:14,871 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activity_Plots_refit.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:14,871 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_TMB_plot_refit.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:14,872 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/Decomposed_Mutation_Probabilities.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:14,965 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures 2023-10-31T23:13:14,966 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/COSMIC_SBS96_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures 2023-10-31T23:13:14,969 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/SBS_96_plots_COSMIC_SBS96.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures 2023-10-31T23:13:14,973 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:14,974 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Samples_Stats_refit.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:14,978 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Signature_Assignment_log.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:14,989 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_refit_Signature_Assignment_log.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:14,991 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/Cosmic_SBS96_Decomposition_Log.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:14,993 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution 2023-10-31T23:13:14,994 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:14,995 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/De_Novo_Mutation_Probabilities_refit.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:15,104 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activities_refit.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:15,107 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activity_Plots_refit.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:15,111 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_TMB_plot_refit.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:15,114 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:15,115 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:15,117 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures_SEM_Error.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:15,120 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS_96_plots_SBS96_De-Novo.pdf -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:15,123 creating build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:15,124 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Samples_Stats_refit.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:15,128 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Signatures_Stats.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:15,129 copying SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_refit_Signature_Assignment_log.txt -> build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:15,138 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2023-10-31T23:13:15,139 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,139 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,142 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,145 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,148 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,151 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,154 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,157 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,159 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,164 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,168 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,171 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,174 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,177 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,181 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,186 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,190 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,193 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,195 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,198 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,201 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,205 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,211 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,214 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,217 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,219 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,225 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:15,230 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,231 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,234 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,237 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,241 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,244 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,246 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,249 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,254 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,259 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,262 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,265 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,271 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,276 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,279 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,281 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,287 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,292 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,295 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,297 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,302 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:15,306 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,307 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,310 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,313 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,316 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,319 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,322 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,325 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,330 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,336 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,338 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,341 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,347 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,353 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,355 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,358 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,363 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,368 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,370 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,373 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,377 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:15,381 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,382 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,385 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,388 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,392 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,395 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,398 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,401 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,406 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,412 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,415 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,417 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,423 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,429 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,431 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,434 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,440 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,444 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,447 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,449 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,454 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:15,459 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,460 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,463 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,466 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,470 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,473 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,475 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,478 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,483 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,487 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,490 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,493 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,497 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,502 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,504 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,507 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,512 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,517 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,519 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,522 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,527 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:15,531 creating build/lib/SigProfilerAssignment/data/tests 2023-10-31T23:13:15,532 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-10-31T23:13:15,533 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-10-31T23:13:15,541 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,541 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,544 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,546 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,549 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,551 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,553 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:15,555 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:15,556 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:15,559 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:15,564 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:15,569 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:15,577 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:15,583 creating build/lib/SigProfilerAssignment/figures 2023-10-31T23:13:15,584 copying SigProfilerAssignment/figures/SigProfilerAssignment.png -> build/lib/SigProfilerAssignment/figures 2023-10-31T23:13:15,589 copying SigProfilerAssignment/figures/cosmic_fit.jpg -> build/lib/SigProfilerAssignment/figures 2023-10-31T23:13:15,595 copying SigProfilerAssignment/figures/cosmic_pic.jpg -> build/lib/SigProfilerAssignment/figures 2023-10-31T23:13:15,600 copying SigProfilerAssignment/figures/decomp_pic.jpg -> build/lib/SigProfilerAssignment/figures 2023-10-31T23:13:15,608 copying SigProfilerAssignment/figures/denovo_fit.jpg -> build/lib/SigProfilerAssignment/figures 2023-10-31T23:13:15,640 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-10-31T23:13:15,640 !! 2023-10-31T23:13:15,641 ******************************************************************************** 2023-10-31T23:13:15,642 Please avoid running ``setup.py`` directly. 2023-10-31T23:13:15,643 Instead, use pypa/build, pypa/installer or other 2023-10-31T23:13:15,643 standards-based tools. 2023-10-31T23:13:15,645 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-10-31T23:13:15,645 ******************************************************************************** 2023-10-31T23:13:15,647 !! 2023-10-31T23:13:15,647 self.initialize_options() 2023-10-31T23:13:15,666 installing to build/bdist.linux-armv7l/wheel 2023-10-31T23:13:15,666 running install 2023-10-31T23:13:15,695 running install_lib 2023-10-31T23:13:15,729 creating build/bdist.linux-armv7l 2023-10-31T23:13:15,730 creating build/bdist.linux-armv7l/wheel 2023-10-31T23:13:15,732 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:15,734 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,736 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-10-31T23:13:15,737 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-10-31T23:13:15,740 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-10-31T23:13:15,741 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-10-31T23:13:15,761 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-10-31T23:13:15,764 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,767 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,770 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,771 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_ID83_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,774 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS288.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,778 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS96.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,780 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS1536.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,783 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_DINUC.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,785 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_SBS288_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,788 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_CNV48_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,790 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_DBS78_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,792 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS1536.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,796 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_INDEL.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,799 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/CNV48_De-Novo_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,801 copying build/lib/SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS96.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ExampleSample 2023-10-31T23:13:15,803 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,805 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,808 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,810 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,812 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,817 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-10-31T23:13:15,819 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:15,821 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:15,822 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:15,826 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:15,827 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:15,829 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:15,832 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:15,835 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples 2023-10-31T23:13:15,836 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8 2023-10-31T23:13:15,838 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:15,839 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/SBS96_selection_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:15,842 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution 2023-10-31T23:13:15,843 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution 2023-10-31T23:13:15,844 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution 2023-10-31T23:13:15,869 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:15,870 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/Cosmic_SBS96_Decomposition_Log.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:15,872 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Samples_Stats_refit.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:15,875 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_refit_Signature_Assignment_log.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:15,877 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Signature_Assignment_log.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats 2023-10-31T23:13:15,888 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/De_Novo_map_to_COSMIC_SBS96.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution 2023-10-31T23:13:15,891 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:15,891 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_TMB_plot_refit.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:15,894 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activity_Plots_refit.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:15,898 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activities_refit.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:15,901 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/Decomposed_Mutation_Probabilities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities 2023-10-31T23:13:16,011 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures 2023-10-31T23:13:16,012 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/SBS_96_plots_COSMIC_SBS96.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures 2023-10-31T23:13:16,015 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/COSMIC_SBS96_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures 2023-10-31T23:13:16,017 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution 2023-10-31T23:13:16,019 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:16,020 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_refit_Signature_Assignment_log.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:16,028 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Signatures_Stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:16,030 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Samples_Stats_refit.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats 2023-10-31T23:13:16,033 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:16,034 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_TMB_plot_refit.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:16,037 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/De_Novo_Mutation_Probabilities_refit.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:16,163 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activities_refit.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:16,166 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activity_Plots_refit.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities 2023-10-31T23:13:16,170 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:16,171 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:16,173 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:16,175 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS_96_plots_SBS96_De-Novo.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures 2023-10-31T23:13:16,178 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_solutions_stat.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:16,180 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96 2023-10-31T23:13:16,187 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions 2023-10-31T23:13:16,189 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures 2023-10-31T23:13:16,190 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:16,191 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Signatures_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:16,193 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Samples_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:16,196 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_NMF_Convergence_Information.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats 2023-10-31T23:13:16,198 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:16,199 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:16,203 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:16,206 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_TMB_NMF_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:16,209 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activity_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities 2023-10-31T23:13:16,213 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:16,214 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/Signature_plotSBS_96_plots_S5.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:16,218 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:16,221 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures 2023-10-31T23:13:16,223 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures 2023-10-31T23:13:16,224 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:16,225 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Signatures_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:16,227 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Samples_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:16,231 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_NMF_Convergence_Information.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats 2023-10-31T23:13:16,233 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:16,234 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:16,238 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_TMB_NMF_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:16,241 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:16,244 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activity_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities 2023-10-31T23:13:16,251 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:16,252 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:16,254 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/Signature_plotSBS_96_plots_S6.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:16,258 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures 2023-10-31T23:13:16,261 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures 2023-10-31T23:13:16,262 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:16,263 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_NMF_Convergence_Information.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:16,265 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Signatures_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:16,267 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Samples_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats 2023-10-31T23:13:16,271 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:16,272 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activity_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:16,276 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:16,278 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_TMB_NMF_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:16,281 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities 2023-10-31T23:13:16,284 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:16,285 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/Signature_plotSBS_96_plots_S1.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:16,288 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:16,290 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures 2023-10-31T23:13:16,292 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures 2023-10-31T23:13:16,293 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:16,294 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Signatures_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:16,296 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Samples_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:16,299 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_NMF_Convergence_Information.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats 2023-10-31T23:13:16,301 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:16,302 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:16,305 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activity_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:16,309 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:16,312 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_TMB_NMF_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities 2023-10-31T23:13:16,316 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:16,317 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:16,319 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:16,321 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/Signature_plotSBS_96_plots_S2.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures 2023-10-31T23:13:16,325 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures 2023-10-31T23:13:16,326 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:16,327 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_NMF_Convergence_Information.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:16,329 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Signatures_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:16,331 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Samples_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats 2023-10-31T23:13:16,334 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:16,335 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activity_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:16,339 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:16,342 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:16,345 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_TMB_NMF_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities 2023-10-31T23:13:16,348 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:16,349 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:16,351 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:16,354 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/Signature_plotSBS_96_plots_S3.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures 2023-10-31T23:13:16,357 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures 2023-10-31T23:13:16,359 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:16,360 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_NMF_Convergence_Information.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:16,362 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Signatures_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:16,363 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Samples_stats.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats 2023-10-31T23:13:16,367 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:16,368 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activity_Plots.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:16,372 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:16,375 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:16,378 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_TMB_NMF_plot.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities 2023-10-31T23:13:16,381 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:16,382 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures_SEM_Error.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:16,385 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:16,387 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/Signature_plotSBS_96_plots_S4.pdf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures 2023-10-31T23:13:16,390 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/JOB_METADATA.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8 2023-10-31T23:13:16,392 copying build/lib/SigProfilerAssignment/data/Examples/Results_scenario_8/Seeds.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Results_scenario_8 2023-10-31T23:13:16,394 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:16,395 copying build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.catalog.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:16,402 copying build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.exposures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:16,406 copying build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:16,416 copying build/lib/SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.sigs.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Examples/Input_scenario_8 2023-10-31T23:13:16,417 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,423 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2023-10-31T23:13:16,424 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-10-31T23:13:16,425 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-10-31T23:13:16,436 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,437 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,440 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,441 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,443 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,445 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,447 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-10-31T23:13:16,450 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:16,451 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:16,457 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:16,462 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:16,466 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:16,471 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-10-31T23:13:16,474 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,476 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,484 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,486 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,489 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,491 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,495 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2023-10-31T23:13:16,496 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,498 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,501 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,507 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,513 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,516 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,519 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,525 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,528 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,535 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,541 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,545 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,549 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,557 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,560 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,563 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,566 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,570 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,575 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,578 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,583 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-10-31T23:13:16,586 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,587 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,590 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,594 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,598 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,602 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,605 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,607 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,612 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,615 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,617 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,622 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,625 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,630 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,635 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,638 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,640 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,643 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,647 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,650 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,652 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-10-31T23:13:16,655 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,656 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,661 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,664 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,669 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,672 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,674 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,679 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,682 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,685 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,687 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,691 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,696 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,699 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,701 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,706 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,711 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,714 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,717 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,721 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,724 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-10-31T23:13:16,727 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,728 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,731 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,734 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,736 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,738 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,742 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,746 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,749 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,752 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,755 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,757 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,762 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,767 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,771 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,774 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,776 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,779 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,783 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,785 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,788 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,790 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,793 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,796 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,800 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,804 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,808 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-10-31T23:13:16,811 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,812 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,817 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,821 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,825 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,828 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,833 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,835 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,838 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,840 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,843 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,845 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,847 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,852 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,861 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,863 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,868 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,872 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,875 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,878 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-10-31T23:13:16,880 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-10-31T23:13:16,882 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:16,884 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/figures 2023-10-31T23:13:16,885 copying build/lib/SigProfilerAssignment/figures/cosmic_pic.jpg -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/figures 2023-10-31T23:13:16,890 copying build/lib/SigProfilerAssignment/figures/decomp_pic.jpg -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/figures 2023-10-31T23:13:16,897 copying build/lib/SigProfilerAssignment/figures/SigProfilerAssignment.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/figures 2023-10-31T23:13:16,902 copying build/lib/SigProfilerAssignment/figures/cosmic_fit.jpg -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/figures 2023-10-31T23:13:16,908 copying build/lib/SigProfilerAssignment/figures/denovo_fit.jpg -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/figures 2023-10-31T23:13:16,915 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:16,918 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-10-31T23:13:16,921 running install_egg_info 2023-10-31T23:13:16,950 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.33-py3.11.egg-info 2023-10-31T23:13:16,964 running install_scripts 2023-10-31T23:13:16,982 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.33.dist-info/WHEEL 2023-10-31T23:13:16,984 creating '/tmp/pip-wheel-8t7wd4m4/SigProfilerAssignment-0.0.33-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-10-31T23:13:16,987 adding 'SigProfilerAssignment/Analyzer.py' 2023-10-31T23:13:16,988 adding 'SigProfilerAssignment/__init__.py' 2023-10-31T23:13:16,994 adding 'SigProfilerAssignment/decompose_subroutines.py' 2023-10-31T23:13:16,998 adding 'SigProfilerAssignment/decomposition.py' 2023-10-31T23:13:17,002 adding 'SigProfilerAssignment/single_sample.py' 2023-10-31T23:13:17,003 adding 'SigProfilerAssignment/version.py' 2023-10-31T23:13:17,007 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2023-10-31T23:13:17,009 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2023-10-31T23:13:17,011 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2023-10-31T23:13:17,013 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2023-10-31T23:13:17,015 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2023-10-31T23:13:17,017 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2023-10-31T23:13:17,019 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2023-10-31T23:13:17,030 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2023-10-31T23:13:17,033 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/CNV48_De-Novo_Signatures.txt' 2023-10-31T23:13:17,035 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_CNV48_Signatures.txt' 2023-10-31T23:13:17,038 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_DBS78_Signatures.txt' 2023-10-31T23:13:17,044 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_ID83_Signatures.txt' 2023-10-31T23:13:17,050 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_SBS288_Signatures.txt' 2023-10-31T23:13:17,052 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_DINUC.txt' 2023-10-31T23:13:17,054 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_INDEL.txt' 2023-10-31T23:13:17,072 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS1536.txt' 2023-10-31T23:13:17,081 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS288.txt' 2023-10-31T23:13:17,083 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS96.txt' 2023-10-31T23:13:17,086 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS1536.txt' 2023-10-31T23:13:17,090 adding 'SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS96.txt' 2023-10-31T23:13:17,092 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2023-10-31T23:13:17,094 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2023-10-31T23:13:17,201 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2023-10-31T23:13:17,209 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2023-10-31T23:13:17,210 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2023-10-31T23:13:17,213 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2023-10-31T23:13:17,215 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2023-10-31T23:13:17,229 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2023-10-31T23:13:17,272 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2023-10-31T23:13:17,277 adding 'SigProfilerAssignment/data/Samples.txt' 2023-10-31T23:13:17,278 adding 'SigProfilerAssignment/data/csvexample.csv' 2023-10-31T23:13:17,281 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2023-10-31T23:13:17,284 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2023-10-31T23:13:17,298 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2023-10-31T23:13:17,476 adding 'SigProfilerAssignment/data/Examples/Input_scenario_8/Samples.txt' 2023-10-31T23:13:17,659 adding 'SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.catalog.csv' 2023-10-31T23:13:17,673 adding 'SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.exposures.csv' 2023-10-31T23:13:17,675 adding 'SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.sigs.csv' 2023-10-31T23:13:17,676 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/JOB_METADATA.txt' 2023-10-31T23:13:17,677 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/Seeds.txt' 2023-10-31T23:13:17,679 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_solutions_stat.csv' 2023-10-31T23:13:17,681 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/SBS96_selection_plot.pdf' 2023-10-31T23:13:17,863 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Samples.txt' 2023-10-31T23:13:17,870 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities.txt' 2023-10-31T23:13:17,873 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities_SEM_Error.txt' 2023-10-31T23:13:17,881 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activity_Plots.pdf' 2023-10-31T23:13:17,884 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_TMB_NMF_plot.pdf' 2023-10-31T23:13:17,886 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures.txt' 2023-10-31T23:13:17,888 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures_SEM_Error.txt' 2023-10-31T23:13:17,892 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/Signature_plotSBS_96_plots_S1.pdf' 2023-10-31T23:13:17,894 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_NMF_Convergence_Information.txt' 2023-10-31T23:13:17,910 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Samples_stats.txt' 2023-10-31T23:13:17,912 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Signatures_stats.txt' 2023-10-31T23:13:17,916 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities.txt' 2023-10-31T23:13:17,920 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities_SEM_Error.txt' 2023-10-31T23:13:17,931 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activity_Plots.pdf' 2023-10-31T23:13:17,935 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_TMB_NMF_plot.pdf' 2023-10-31T23:13:17,937 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures.txt' 2023-10-31T23:13:17,939 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures_SEM_Error.txt' 2023-10-31T23:13:17,944 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/Signature_plotSBS_96_plots_S2.pdf' 2023-10-31T23:13:17,946 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_NMF_Convergence_Information.txt' 2023-10-31T23:13:17,960 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Samples_stats.txt' 2023-10-31T23:13:17,962 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Signatures_stats.txt' 2023-10-31T23:13:17,967 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities.txt' 2023-10-31T23:13:17,975 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities_SEM_Error.txt' 2023-10-31T23:13:17,988 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activity_Plots.pdf' 2023-10-31T23:13:17,993 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_TMB_NMF_plot.pdf' 2023-10-31T23:13:17,995 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures.txt' 2023-10-31T23:13:17,997 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures_SEM_Error.txt' 2023-10-31T23:13:18,003 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/Signature_plotSBS_96_plots_S3.pdf' 2023-10-31T23:13:18,005 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_NMF_Convergence_Information.txt' 2023-10-31T23:13:18,017 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Samples_stats.txt' 2023-10-31T23:13:18,018 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Signatures_stats.txt' 2023-10-31T23:13:18,026 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities.txt' 2023-10-31T23:13:18,035 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities_SEM_Error.txt' 2023-10-31T23:13:18,051 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activity_Plots.pdf' 2023-10-31T23:13:18,057 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_TMB_NMF_plot.pdf' 2023-10-31T23:13:18,060 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures.txt' 2023-10-31T23:13:18,062 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures_SEM_Error.txt' 2023-10-31T23:13:18,069 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/Signature_plotSBS_96_plots_S4.pdf' 2023-10-31T23:13:18,071 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_NMF_Convergence_Information.txt' 2023-10-31T23:13:18,083 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Samples_stats.txt' 2023-10-31T23:13:18,084 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Signatures_stats.txt' 2023-10-31T23:13:18,094 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities.txt' 2023-10-31T23:13:18,105 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities_SEM_Error.txt' 2023-10-31T23:13:18,124 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activity_Plots.pdf' 2023-10-31T23:13:18,131 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_TMB_NMF_plot.pdf' 2023-10-31T23:13:18,134 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures.txt' 2023-10-31T23:13:18,136 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures_SEM_Error.txt' 2023-10-31T23:13:18,143 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/Signature_plotSBS_96_plots_S5.pdf' 2023-10-31T23:13:18,146 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_NMF_Convergence_Information.txt' 2023-10-31T23:13:18,157 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Samples_stats.txt' 2023-10-31T23:13:18,159 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Signatures_stats.txt' 2023-10-31T23:13:18,171 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities.txt' 2023-10-31T23:13:18,184 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities_SEM_Error.txt' 2023-10-31T23:13:18,205 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activity_Plots.pdf' 2023-10-31T23:13:18,212 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_TMB_NMF_plot.pdf' 2023-10-31T23:13:18,215 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures.txt' 2023-10-31T23:13:18,217 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures_SEM_Error.txt' 2023-10-31T23:13:18,226 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/Signature_plotSBS_96_plots_S6.pdf' 2023-10-31T23:13:18,228 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_NMF_Convergence_Information.txt' 2023-10-31T23:13:18,240 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Samples_stats.txt' 2023-10-31T23:13:18,242 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Signatures_stats.txt' 2023-10-31T23:13:18,244 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/De_Novo_map_to_COSMIC_SBS96.csv' 2023-10-31T23:13:18,399 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf' 2023-10-31T23:13:18,417 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activities_refit.txt' 2023-10-31T23:13:18,430 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activity_Plots_refit.pdf' 2023-10-31T23:13:18,434 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_TMB_plot_refit.pdf' 2023-10-31T23:13:19,698 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/Decomposed_Mutation_Probabilities.txt' 2023-10-31T23:13:19,759 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/COSMIC_SBS96_Signatures.txt' 2023-10-31T23:13:19,766 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/SBS_96_plots_COSMIC_SBS96.pdf' 2023-10-31T23:13:19,780 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Samples_Stats_refit.txt' 2023-10-31T23:13:19,805 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Signature_Assignment_log.txt' 2023-10-31T23:13:19,811 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_refit_Signature_Assignment_log.txt' 2023-10-31T23:13:19,813 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/Cosmic_SBS96_Decomposition_Log.txt' 2023-10-31T23:13:21,497 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/De_Novo_Mutation_Probabilities_refit.txt' 2023-10-31T23:13:21,563 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activities_refit.txt' 2023-10-31T23:13:21,576 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activity_Plots_refit.pdf' 2023-10-31T23:13:21,581 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_TMB_plot_refit.pdf' 2023-10-31T23:13:21,583 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures.txt' 2023-10-31T23:13:21,585 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures_SEM_Error.txt' 2023-10-31T23:13:21,591 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS_96_plots_SBS96_De-Novo.pdf' 2023-10-31T23:13:21,603 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Samples_Stats_refit.txt' 2023-10-31T23:13:21,605 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Signatures_Stats.txt' 2023-10-31T23:13:21,621 adding 'SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_refit_Signature_Assignment_log.txt' 2023-10-31T23:13:21,629 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2023-10-31T23:13:21,638 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2023-10-31T23:13:21,646 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2023-10-31T23:13:21,658 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2023-10-31T23:13:21,662 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2023-10-31T23:13:21,666 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2023-10-31T23:13:21,671 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2023-10-31T23:13:21,705 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2023-10-31T23:13:21,740 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2023-10-31T23:13:21,744 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2023-10-31T23:13:21,747 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2023-10-31T23:13:21,753 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2023-10-31T23:13:21,774 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2023-10-31T23:13:21,811 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2023-10-31T23:13:21,849 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2023-10-31T23:13:21,854 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2023-10-31T23:13:21,857 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2023-10-31T23:13:21,861 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2023-10-31T23:13:21,867 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2023-10-31T23:13:21,903 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2023-10-31T23:13:21,942 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2023-10-31T23:13:21,946 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2023-10-31T23:13:21,950 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2023-10-31T23:13:21,956 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2023-10-31T23:13:21,987 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2023-10-31T23:13:22,019 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2023-10-31T23:13:22,029 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2023-10-31T23:13:22,038 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2023-10-31T23:13:22,050 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2023-10-31T23:13:22,063 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2023-10-31T23:13:22,066 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2023-10-31T23:13:22,070 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2023-10-31T23:13:22,104 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2023-10-31T23:13:22,138 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2023-10-31T23:13:22,143 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2023-10-31T23:13:22,146 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2023-10-31T23:13:22,182 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2023-10-31T23:13:22,220 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2023-10-31T23:13:22,224 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2023-10-31T23:13:22,228 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2023-10-31T23:13:22,265 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2023-10-31T23:13:22,303 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2023-10-31T23:13:22,307 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2023-10-31T23:13:22,311 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2023-10-31T23:13:22,342 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2023-10-31T23:13:22,374 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2023-10-31T23:13:22,383 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2023-10-31T23:13:22,392 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2023-10-31T23:13:22,404 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2023-10-31T23:13:22,416 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2023-10-31T23:13:22,420 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2023-10-31T23:13:22,423 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2023-10-31T23:13:22,457 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2023-10-31T23:13:22,492 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2023-10-31T23:13:22,496 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2023-10-31T23:13:22,499 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2023-10-31T23:13:22,536 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2023-10-31T23:13:22,574 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2023-10-31T23:13:22,578 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2023-10-31T23:13:22,581 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2023-10-31T23:13:22,619 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2023-10-31T23:13:22,657 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2023-10-31T23:13:22,662 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2023-10-31T23:13:22,665 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2023-10-31T23:13:22,696 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2023-10-31T23:13:22,728 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2023-10-31T23:13:22,738 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2023-10-31T23:13:22,747 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2023-10-31T23:13:22,760 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2023-10-31T23:13:22,772 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2023-10-31T23:13:22,776 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2023-10-31T23:13:22,779 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2023-10-31T23:13:22,813 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2023-10-31T23:13:22,848 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2023-10-31T23:13:22,852 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2023-10-31T23:13:22,855 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2023-10-31T23:13:22,892 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2023-10-31T23:13:22,929 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2023-10-31T23:13:22,933 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2023-10-31T23:13:22,937 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2023-10-31T23:13:22,974 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2023-10-31T23:13:23,012 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2023-10-31T23:13:23,017 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2023-10-31T23:13:23,020 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2023-10-31T23:13:23,051 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2023-10-31T23:13:23,083 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2023-10-31T23:13:23,093 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2023-10-31T23:13:23,102 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2023-10-31T23:13:23,114 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2023-10-31T23:13:23,126 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2023-10-31T23:13:23,130 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2023-10-31T23:13:23,133 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2023-10-31T23:13:23,167 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2023-10-31T23:13:23,202 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2023-10-31T23:13:23,206 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2023-10-31T23:13:23,209 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2023-10-31T23:13:23,246 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2023-10-31T23:13:23,283 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2023-10-31T23:13:23,288 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2023-10-31T23:13:23,291 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2023-10-31T23:13:23,328 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2023-10-31T23:13:23,366 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2023-10-31T23:13:23,371 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2023-10-31T23:13:23,374 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2023-10-31T23:13:23,405 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2023-10-31T23:13:23,437 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2023-10-31T23:13:23,502 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2023-10-31T23:13:23,508 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2023-10-31T23:13:23,510 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2023-10-31T23:13:23,511 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2023-10-31T23:13:23,513 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2023-10-31T23:13:23,514 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2023-10-31T23:13:23,516 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2023-10-31T23:13:23,522 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2023-10-31T23:13:23,542 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2023-10-31T23:13:23,561 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2023-10-31T23:13:23,594 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2023-10-31T23:13:23,616 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2023-10-31T23:13:23,633 adding 'SigProfilerAssignment/figures/SigProfilerAssignment.png' 2023-10-31T23:13:23,655 adding 'SigProfilerAssignment/figures/cosmic_fit.jpg' 2023-10-31T23:13:23,675 adding 'SigProfilerAssignment/figures/cosmic_pic.jpg' 2023-10-31T23:13:23,706 adding 'SigProfilerAssignment/figures/decomp_pic.jpg' 2023-10-31T23:13:23,732 adding 'SigProfilerAssignment/figures/denovo_fit.jpg' 2023-10-31T23:13:23,736 adding 'SigProfilerAssignment-0.0.33.dist-info/LICENSE.txt' 2023-10-31T23:13:23,737 adding 'SigProfilerAssignment-0.0.33.dist-info/METADATA' 2023-10-31T23:13:23,739 adding 'SigProfilerAssignment-0.0.33.dist-info/WHEEL' 2023-10-31T23:13:23,740 adding 'SigProfilerAssignment-0.0.33.dist-info/top_level.txt' 2023-10-31T23:13:23,745 adding 'SigProfilerAssignment-0.0.33.dist-info/RECORD' 2023-10-31T23:13:23,903 removing build/bdist.linux-armv7l/wheel 2023-10-31T23:13:24,096 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2023-10-31T23:13:24,262 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.33-py3-none-any.whl size=13984274 sha256=9280531891ca6ed44a811f231aec0cd1c044f58a7b22e7d66f6e8ff3dce066bc 2023-10-31T23:13:24,263 Stored in directory: /tmp/pip-ephem-wheel-cache-3pj5noei/wheels/18/02/d6/39cb7d8f1d2e8377fb022cd451680d1d32204031c2cfcd0529 2023-10-31T23:13:24,287 Successfully built sigprofilerassignment 2023-10-31T23:13:24,646 Removed build tracker: '/tmp/pip-build-tracker-5a8eclz5'