2023-11-01T16:54:56,038 Created temporary directory: /tmp/pip-build-tracker-jpmxy397 2023-11-01T16:54:56,039 Initialized build tracking at /tmp/pip-build-tracker-jpmxy397 2023-11-01T16:54:56,040 Created build tracker: /tmp/pip-build-tracker-jpmxy397 2023-11-01T16:54:56,040 Entered build tracker: /tmp/pip-build-tracker-jpmxy397 2023-11-01T16:54:56,041 Created temporary directory: /tmp/pip-wheel-785n_8ms 2023-11-01T16:54:56,044 Created temporary directory: /tmp/pip-ephem-wheel-cache-zo4ghrb9 2023-11-01T16:54:56,068 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-01T16:54:56,072 2 location(s) to search for versions of bluepyemodel: 2023-11-01T16:54:56,072 * https://pypi.org/simple/bluepyemodel/ 2023-11-01T16:54:56,072 * https://www.piwheels.org/simple/bluepyemodel/ 2023-11-01T16:54:56,072 Fetching project page and analyzing links: https://pypi.org/simple/bluepyemodel/ 2023-11-01T16:54:56,073 Getting page https://pypi.org/simple/bluepyemodel/ 2023-11-01T16:54:56,074 Found index url https://pypi.org/simple/ 2023-11-01T16:54:56,298 Fetched page https://pypi.org/simple/bluepyemodel/ as application/vnd.pypi.simple.v1+json 2023-11-01T16:54:56,314 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/77/ae/9e95ea0862330f97262af1bbd4317f66be2f17c82edf0a0c990552195635/bluepyemodel-0.0.16-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-11-01T16:54:56,315 Found link https://files.pythonhosted.org/packages/4e/bf/b26fd0e56561c6d04a5b8ddc69939b8302f33583126137055fa6e7a93a0a/bluepyemodel-0.0.16.tar.gz (from https://pypi.org/simple/bluepyemodel/), version: 0.0.16 2023-11-01T16:54:56,315 Skipping link: No binaries permitted for bluepyemodel: https://files.pythonhosted.org/packages/44/fd/556856c23025b90629675089e6058238fe2723b52a34b2ceabd04403e3c6/bluepyemodel-0.0.17-py3-none-any.whl (from https://pypi.org/simple/bluepyemodel/) 2023-11-01T16:54:56,316 Found link 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https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.18-py3-none-any.whl#sha256=e68f07045a6a72865a8664f7d53d43b4abb3f2f4d35f6cfe9ba685acf6fdecb0 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-11-01T16:54:56,572 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.17-py3-none-any.whl#sha256=75abc5c8573218e8036c6e4bf436fa090d127a7e30d853310c7134eeac3ba6e8 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-11-01T16:54:56,572 Skipping link: No binaries permitted for bluepyemodel: https://www.piwheels.org/simple/bluepyemodel/bluepyemodel-0.0.16-py3-none-any.whl#sha256=1320b98733e0bc6ad9ce13b5dd897b4bc81267c1b828fb41ef6efc85571130d0 (from https://www.piwheels.org/simple/bluepyemodel/) 2023-11-01T16:54:56,573 Skipping link: not a file: https://www.piwheels.org/simple/bluepyemodel/ 2023-11-01T16:54:56,574 Skipping link: not a file: https://pypi.org/simple/bluepyemodel/ 2023-11-01T16:54:56,599 Given no hashes to check 1 links for project 'bluepyemodel': discarding no candidates 2023-11-01T16:54:56,618 Collecting bluepyemodel==0.0.58 2023-11-01T16:54:56,621 Created temporary directory: /tmp/pip-unpack-j_h84vnh 2023-11-01T16:54:56,867 Downloading bluepyemodel-0.0.58.tar.gz (13.0 MB) 2023-11-01T16:55:01,993 Added bluepyemodel==0.0.58 from https://files.pythonhosted.org/packages/eb/0b/afa0e36648126ce9fe94d47b915ce422057323ce614db72bf34ced6af1c7/bluepyemodel-0.0.58.tar.gz to build tracker '/tmp/pip-build-tracker-jpmxy397' 2023-11-01T16:55:01,996 Running setup.py (path:/tmp/pip-wheel-785n_8ms/bluepyemodel_69ec507a2fd642bf9a0569ec48f5e52f/setup.py) egg_info for package bluepyemodel 2023-11-01T16:55:01,997 Created temporary directory: /tmp/pip-pip-egg-info-th1femsp 2023-11-01T16:55:01,997 Preparing metadata (setup.py): started 2023-11-01T16:55:01,999 Running command python setup.py egg_info 2023-11-01T16:55:02,464 /tmp/pip-wheel-785n_8ms/bluepyemodel_69ec507a2fd642bf9a0569ec48f5e52f/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-11-01T16:55:02,464 import imp 2023-11-01T16:55:02,766 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-01T16:55:02,767 !! 2023-11-01T16:55:02,769 ******************************************************************************** 2023-11-01T16:55:02,770 Requirements should be satisfied by a PEP 517 installer. 2023-11-01T16:55:02,770 If you are using pip, you can try `pip install --use-pep517`. 2023-11-01T16:55:02,771 ******************************************************************************** 2023-11-01T16:55:02,772 !! 2023-11-01T16:55:02,773 dist.fetch_build_eggs(dist.setup_requires) 2023-11-01T16:55:06,109 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-01T16:55:06,216 running egg_info 2023-11-01T16:55:06,218 creating /tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info 2023-11-01T16:55:06,245 writing /tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/PKG-INFO 2023-11-01T16:55:06,253 writing dependency_links to /tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/dependency_links.txt 2023-11-01T16:55:06,258 writing requirements to /tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/requires.txt 2023-11-01T16:55:06,259 writing top-level names to /tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/top_level.txt 2023-11-01T16:55:06,261 writing manifest file '/tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/SOURCES.txt' 2023-11-01T16:55:06,447 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-01T16:55:06,454 reading manifest file '/tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/SOURCES.txt' 2023-11-01T16:55:06,455 reading manifest template 'MANIFEST.in' 2023-11-01T16:55:06,456 adding license file 'LICENSE.txt' 2023-11-01T16:55:06,457 adding license file 'COPYING' 2023-11-01T16:55:06,457 adding license file 'AUTHORS.txt' 2023-11-01T16:55:06,461 writing manifest file '/tmp/pip-pip-egg-info-th1femsp/bluepyemodel.egg-info/SOURCES.txt' 2023-11-01T16:55:06,580 Preparing metadata (setup.py): finished with status 'done' 2023-11-01T16:55:06,584 Source in /tmp/pip-wheel-785n_8ms/bluepyemodel_69ec507a2fd642bf9a0569ec48f5e52f has version 0.0.58, which satisfies requirement bluepyemodel==0.0.58 from https://files.pythonhosted.org/packages/eb/0b/afa0e36648126ce9fe94d47b915ce422057323ce614db72bf34ced6af1c7/bluepyemodel-0.0.58.tar.gz 2023-11-01T16:55:06,585 Removed bluepyemodel==0.0.58 from https://files.pythonhosted.org/packages/eb/0b/afa0e36648126ce9fe94d47b915ce422057323ce614db72bf34ced6af1c7/bluepyemodel-0.0.58.tar.gz from build tracker '/tmp/pip-build-tracker-jpmxy397' 2023-11-01T16:55:06,591 Created temporary directory: /tmp/pip-unpack-g72daazj 2023-11-01T16:55:06,592 Created temporary directory: /tmp/pip-unpack-bi6m0n7z 2023-11-01T16:55:06,651 Building wheels for collected packages: bluepyemodel 2023-11-01T16:55:06,655 Created temporary directory: /tmp/pip-wheel-tjvw5me1 2023-11-01T16:55:06,656 Building wheel for bluepyemodel (setup.py): started 2023-11-01T16:55:06,657 Destination directory: /tmp/pip-wheel-tjvw5me1 2023-11-01T16:55:06,658 Running command python setup.py bdist_wheel 2023-11-01T16:55:07,060 /tmp/pip-wheel-785n_8ms/bluepyemodel_69ec507a2fd642bf9a0569ec48f5e52f/setup.py:19: DeprecationWarning: the imp module is deprecated in favour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses 2023-11-01T16:55:07,060 import imp 2023-11-01T16:55:07,343 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-01T16:55:07,343 !! 2023-11-01T16:55:07,345 ******************************************************************************** 2023-11-01T16:55:07,345 Requirements should be satisfied by a PEP 517 installer. 2023-11-01T16:55:07,346 If you are using pip, you can try `pip install --use-pep517`. 2023-11-01T16:55:07,347 ******************************************************************************** 2023-11-01T16:55:07,348 !! 2023-11-01T16:55:07,349 dist.fetch_build_eggs(dist.setup_requires) 2023-11-01T16:55:07,894 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-01T16:55:07,996 running bdist_wheel 2023-11-01T16:55:08,136 running build 2023-11-01T16:55:08,136 running build_py 2023-11-01T16:55:08,167 creating build 2023-11-01T16:55:08,167 creating build/lib 2023-11-01T16:55:08,168 creating build/lib/tests 2023-11-01T16:55:08,169 copying tests/__init__.py -> build/lib/tests 2023-11-01T16:55:08,171 creating build/lib/bluepyemodel 2023-11-01T16:55:08,172 copying bluepyemodel/__init__.py -> build/lib/bluepyemodel 2023-11-01T16:55:08,175 creating build/lib/tests/functional_tests 2023-11-01T16:55:08,175 copying tests/functional_tests/test_validation.py -> build/lib/tests/functional_tests 2023-11-01T16:55:08,177 copying tests/functional_tests/__init__.py -> build/lib/tests/functional_tests 2023-11-01T16:55:08,179 copying tests/functional_tests/test_protocols.py -> build/lib/tests/functional_tests 2023-11-01T16:55:08,182 creating build/lib/tests/unit_tests 2023-11-01T16:55:08,183 copying tests/unit_tests/test_tools.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,184 copying tests/unit_tests/test_ecodes.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,187 copying tests/unit_tests/test_emodelmetadata.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,189 copying tests/unit_tests/test_local_access_point.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,190 copying tests/unit_tests/test_optimisation.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,192 copying tests/unit_tests/__init__.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,194 copying tests/unit_tests/test_targets_configuration.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,195 copying tests/unit_tests/test_fitness_calculator_configuration.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,198 copying tests/unit_tests/test_evaluator.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,199 copying tests/unit_tests/test_model_parameters_configuration.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,201 copying tests/unit_tests/test_validation_functions.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,203 copying tests/unit_tests/test_model.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,205 copying tests/unit_tests/test_plotting.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,206 copying tests/unit_tests/test_emodel_pipeline.py -> build/lib/tests/unit_tests 2023-11-01T16:55:08,208 creating build/lib/tests/test_models 2023-11-01T16:55:08,209 copying tests/test_models/dummycells.py -> build/lib/tests/test_models 2023-11-01T16:55:08,211 copying tests/test_models/__init__.py -> build/lib/tests/test_models 2023-11-01T16:55:08,213 creating build/lib/bluepyemodel/export_emodel 2023-11-01T16:55:08,214 copying bluepyemodel/export_emodel/utils.py -> build/lib/bluepyemodel/export_emodel 2023-11-01T16:55:08,216 copying bluepyemodel/export_emodel/export_emodel.py -> build/lib/bluepyemodel/export_emodel 2023-11-01T16:55:08,218 copying bluepyemodel/export_emodel/__init__.py -> build/lib/bluepyemodel/export_emodel 2023-11-01T16:55:08,221 creating build/lib/bluepyemodel/tasks 2023-11-01T16:55:08,222 copying bluepyemodel/tasks/config.py -> build/lib/bluepyemodel/tasks 2023-11-01T16:55:08,224 copying bluepyemodel/tasks/luigi_custom.py -> build/lib/bluepyemodel/tasks 2023-11-01T16:55:08,225 copying bluepyemodel/tasks/luigi_tools.py -> build/lib/bluepyemodel/tasks 2023-11-01T16:55:08,227 copying bluepyemodel/tasks/__init__.py -> build/lib/bluepyemodel/tasks 2023-11-01T16:55:08,229 creating build/lib/bluepyemodel/optimisation 2023-11-01T16:55:08,230 copying bluepyemodel/optimisation/__init__.py -> build/lib/bluepyemodel/optimisation 2023-11-01T16:55:08,232 copying bluepyemodel/optimisation/optimisation.py -> build/lib/bluepyemodel/optimisation 2023-11-01T16:55:08,235 creating build/lib/bluepyemodel/tools 2023-11-01T16:55:08,236 copying bluepyemodel/tools/utils.py -> build/lib/bluepyemodel/tools 2023-11-01T16:55:08,238 copying bluepyemodel/tools/mechanisms.py -> build/lib/bluepyemodel/tools 2023-11-01T16:55:08,240 copying bluepyemodel/tools/morphology.py -> build/lib/bluepyemodel/tools 2023-11-01T16:55:08,242 copying bluepyemodel/tools/search_pdfs.py -> build/lib/bluepyemodel/tools 2023-11-01T16:55:08,244 copying bluepyemodel/tools/__init__.py -> build/lib/bluepyemodel/tools 2023-11-01T16:55:08,245 copying bluepyemodel/tools/multiprocessing.py -> build/lib/bluepyemodel/tools 2023-11-01T16:55:08,247 creating build/lib/bluepyemodel/access_point 2023-11-01T16:55:08,248 copying bluepyemodel/access_point/access_point.py -> build/lib/bluepyemodel/access_point 2023-11-01T16:55:08,250 copying bluepyemodel/access_point/__init__.py -> build/lib/bluepyemodel/access_point 2023-11-01T16:55:08,252 copying bluepyemodel/access_point/local.py -> build/lib/bluepyemodel/access_point 2023-11-01T16:55:08,255 creating build/lib/bluepyemodel/validation 2023-11-01T16:55:08,256 copying bluepyemodel/validation/validation.py -> build/lib/bluepyemodel/validation 2023-11-01T16:55:08,258 copying bluepyemodel/validation/__init__.py -> build/lib/bluepyemodel/validation 2023-11-01T16:55:08,260 copying bluepyemodel/validation/validation_functions.py -> build/lib/bluepyemodel/validation 2023-11-01T16:55:08,262 creating build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,263 copying bluepyemodel/ecode/sahp.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,265 copying bluepyemodel/ecode/dendrite.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,267 copying bluepyemodel/ecode/iv.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,269 copying bluepyemodel/ecode/firepattern.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,271 copying bluepyemodel/ecode/noiseou3.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,273 copying bluepyemodel/ecode/random_square_inputs.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,274 copying bluepyemodel/ecode/dehyperpol.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,277 copying bluepyemodel/ecode/apwaveform.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,278 copying bluepyemodel/ecode/idrest.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,280 copying bluepyemodel/ecode/poscheops.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,282 copying bluepyemodel/ecode/probampanmda_ems.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,284 copying bluepyemodel/ecode/spikerec.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,286 copying bluepyemodel/ecode/subwhitenoise.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,288 copying bluepyemodel/ecode/__init__.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,290 copying bluepyemodel/ecode/sinespec.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,291 copying bluepyemodel/ecode/comb.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,293 copying bluepyemodel/ecode/stimulus.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,295 copying bluepyemodel/ecode/hyperdepol.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,297 copying bluepyemodel/ecode/negcheops.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,299 copying bluepyemodel/ecode/customfromfile.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,301 copying bluepyemodel/ecode/noise.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,302 copying bluepyemodel/ecode/ramp.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,304 copying bluepyemodel/ecode/whitenoise.py -> build/lib/bluepyemodel/ecode 2023-11-01T16:55:08,307 creating build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,308 copying bluepyemodel/emodel_pipeline/emodel.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,310 copying bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,312 copying bluepyemodel/emodel_pipeline/emodel_settings.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,314 copying bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,317 copying bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,319 copying bluepyemodel/emodel_pipeline/__init__.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,320 copying bluepyemodel/emodel_pipeline/emodel_script.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,322 copying bluepyemodel/emodel_pipeline/plotting.py -> build/lib/bluepyemodel/emodel_pipeline 2023-11-01T16:55:08,325 creating build/lib/bluepyemodel/model 2023-11-01T16:55:08,326 copying bluepyemodel/model/neuron_model_configuration.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,328 copying bluepyemodel/model/model_configurator.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,330 copying bluepyemodel/model/model.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,332 copying bluepyemodel/model/utils.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,334 copying bluepyemodel/model/distribution_configuration.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,336 copying bluepyemodel/model/model_configuration.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,337 copying bluepyemodel/model/parameter_configuration.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,339 copying bluepyemodel/model/morphology_configuration.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,341 copying bluepyemodel/model/mechanism_configuration.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,343 copying bluepyemodel/model/__init__.py -> build/lib/bluepyemodel/model 2023-11-01T16:55:08,345 creating build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,346 copying bluepyemodel/efeatures_extraction/target.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,348 copying bluepyemodel/efeatures_extraction/auto_targets.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,350 copying bluepyemodel/efeatures_extraction/targets_configuration.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,352 copying bluepyemodel/efeatures_extraction/targets_configurator.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,354 copying bluepyemodel/efeatures_extraction/__init__.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,355 copying bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,357 copying bluepyemodel/efeatures_extraction/trace_file.py -> build/lib/bluepyemodel/efeatures_extraction 2023-11-01T16:55:08,359 creating build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,360 copying bluepyemodel/evaluation/evaluation.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,363 copying bluepyemodel/evaluation/efel_feature_bpem.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,365 copying bluepyemodel/evaluation/protocols.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,368 copying bluepyemodel/evaluation/protocol_configuration.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,370 copying bluepyemodel/evaluation/recordings.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,372 copying bluepyemodel/evaluation/efeature_configuration.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,373 copying bluepyemodel/evaluation/modifiers.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,376 copying bluepyemodel/evaluation/__init__.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,377 copying bluepyemodel/evaluation/evaluator.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,380 copying bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/lib/bluepyemodel/evaluation 2023-11-01T16:55:08,383 creating build/lib/bluepyemodel/tasks/emodel_creation 2023-11-01T16:55:08,383 copying bluepyemodel/tasks/emodel_creation/__init__.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-11-01T16:55:08,385 copying bluepyemodel/tasks/emodel_creation/optimisation.py -> build/lib/bluepyemodel/tasks/emodel_creation 2023-11-01T16:55:08,388 running egg_info 2023-11-01T16:55:08,416 writing bluepyemodel.egg-info/PKG-INFO 2023-11-01T16:55:08,425 writing dependency_links to bluepyemodel.egg-info/dependency_links.txt 2023-11-01T16:55:08,429 writing requirements to bluepyemodel.egg-info/requires.txt 2023-11-01T16:55:08,431 writing top-level names to bluepyemodel.egg-info/top_level.txt 2023-11-01T16:55:08,531 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-01T16:55:08,534 reading manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-11-01T16:55:08,552 reading manifest template 'MANIFEST.in' 2023-11-01T16:55:08,553 adding license file 'LICENSE.txt' 2023-11-01T16:55:08,553 adding license file 'COPYING' 2023-11-01T16:55:08,554 adding license file 'AUTHORS.txt' 2023-11-01T16:55:08,562 writing manifest file 'bluepyemodel.egg-info/SOURCES.txt' 2023-11-01T16:55:08,565 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.ecode.data' is absent from the `packages` configuration. 2023-11-01T16:55:08,565 !! 2023-11-01T16:55:08,566 ******************************************************************************** 2023-11-01T16:55:08,566 ############################ 2023-11-01T16:55:08,567 # Package would be ignored # 2023-11-01T16:55:08,567 ############################ 2023-11-01T16:55:08,568 Python recognizes 'bluepyemodel.ecode.data' as an importable package[^1], 2023-11-01T16:55:08,568 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,569 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,570 package, please make sure that 'bluepyemodel.ecode.data' is explicitly added 2023-11-01T16:55:08,571 to the `packages` configuration field. 2023-11-01T16:55:08,572 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,573 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,574 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,577 If you don't want 'bluepyemodel.ecode.data' to be distributed and are 2023-11-01T16:55:08,577 already explicitly excluding 'bluepyemodel.ecode.data' via 2023-11-01T16:55:08,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,579 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,579 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,581 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,584 even if it does not contain any `.py` files. 2023-11-01T16:55:08,585 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,586 directory, all directories are treated like packages. 2023-11-01T16:55:08,586 ******************************************************************************** 2023-11-01T16:55:08,588 !! 2023-11-01T16:55:08,588 check.warn(importable) 2023-11-01T16:55:08,589 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'bluepyemodel.export_emodel.templates' is absent from the `packages` configuration. 2023-11-01T16:55:08,590 !! 2023-11-01T16:55:08,591 ******************************************************************************** 2023-11-01T16:55:08,592 ############################ 2023-11-01T16:55:08,592 # Package would be ignored # 2023-11-01T16:55:08,593 ############################ 2023-11-01T16:55:08,593 Python recognizes 'bluepyemodel.export_emodel.templates' as an importable package[^1], 2023-11-01T16:55:08,594 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,595 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,596 package, please make sure that 'bluepyemodel.export_emodel.templates' is explicitly added 2023-11-01T16:55:08,596 to the `packages` configuration field. 2023-11-01T16:55:08,598 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,599 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,600 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,601 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,604 If you don't want 'bluepyemodel.export_emodel.templates' to be distributed and are 2023-11-01T16:55:08,604 already explicitly excluding 'bluepyemodel.export_emodel.templates' via 2023-11-01T16:55:08,605 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,605 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,606 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,607 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,610 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,613 even if it does not contain any `.py` files. 2023-11-01T16:55:08,613 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,614 directory, all directories are treated like packages. 2023-11-01T16:55:08,614 ******************************************************************************** 2023-11-01T16:55:08,615 !! 2023-11-01T16:55:08,616 check.warn(importable) 2023-11-01T16:55:08,617 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data' is absent from the `packages` configuration. 2023-11-01T16:55:08,617 !! 2023-11-01T16:55:08,618 ******************************************************************************** 2023-11-01T16:55:08,619 ############################ 2023-11-01T16:55:08,620 # Package would be ignored # 2023-11-01T16:55:08,620 ############################ 2023-11-01T16:55:08,621 Python recognizes 'tests.test_data' as an importable package[^1], 2023-11-01T16:55:08,622 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,623 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,623 package, please make sure that 'tests.test_data' is explicitly added 2023-11-01T16:55:08,624 to the `packages` configuration field. 2023-11-01T16:55:08,625 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,626 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,628 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,629 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,630 If you don't want 'tests.test_data' to be distributed and are 2023-11-01T16:55:08,630 already explicitly excluding 'tests.test_data' via 2023-11-01T16:55:08,630 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,632 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,633 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,636 even if it does not contain any `.py` files. 2023-11-01T16:55:08,636 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,637 directory, all directories are treated like packages. 2023-11-01T16:55:08,637 ******************************************************************************** 2023-11-01T16:55:08,639 !! 2023-11-01T16:55:08,639 check.warn(importable) 2023-11-01T16:55:08,640 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.config' is absent from the `packages` configuration. 2023-11-01T16:55:08,640 !! 2023-11-01T16:55:08,641 ******************************************************************************** 2023-11-01T16:55:08,642 ############################ 2023-11-01T16:55:08,642 # Package would be ignored # 2023-11-01T16:55:08,643 ############################ 2023-11-01T16:55:08,643 Python recognizes 'tests.test_data.config' as an importable package[^1], 2023-11-01T16:55:08,644 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,645 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,646 package, please make sure that 'tests.test_data.config' is explicitly added 2023-11-01T16:55:08,646 to the `packages` configuration field. 2023-11-01T16:55:08,647 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,648 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,648 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,650 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,653 If you don't want 'tests.test_data.config' to be distributed and are 2023-11-01T16:55:08,653 already explicitly excluding 'tests.test_data.config' via 2023-11-01T16:55:08,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,655 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,656 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,659 even if it does not contain any `.py` files. 2023-11-01T16:55:08,660 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,661 directory, all directories are treated like packages. 2023-11-01T16:55:08,661 ******************************************************************************** 2023-11-01T16:55:08,662 !! 2023-11-01T16:55:08,663 check.warn(importable) 2023-11-01T16:55:08,663 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.ephys_data' is absent from the `packages` configuration. 2023-11-01T16:55:08,664 !! 2023-11-01T16:55:08,665 ******************************************************************************** 2023-11-01T16:55:08,665 ############################ 2023-11-01T16:55:08,666 # Package would be ignored # 2023-11-01T16:55:08,666 ############################ 2023-11-01T16:55:08,667 Python recognizes 'tests.test_data.ephys_data' as an importable package[^1], 2023-11-01T16:55:08,667 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,668 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,668 package, please make sure that 'tests.test_data.ephys_data' is explicitly added 2023-11-01T16:55:08,669 to the `packages` configuration field. 2023-11-01T16:55:08,670 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,671 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,672 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,675 If you don't want 'tests.test_data.ephys_data' to be distributed and are 2023-11-01T16:55:08,675 already explicitly excluding 'tests.test_data.ephys_data' via 2023-11-01T16:55:08,676 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,677 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,677 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,679 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,680 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,682 even if it does not contain any `.py` files. 2023-11-01T16:55:08,683 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,683 directory, all directories are treated like packages. 2023-11-01T16:55:08,684 ******************************************************************************** 2023-11-01T16:55:08,685 !! 2023-11-01T16:55:08,686 check.warn(importable) 2023-11-01T16:55:08,686 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.mechanisms' is absent from the `packages` configuration. 2023-11-01T16:55:08,687 !! 2023-11-01T16:55:08,688 ******************************************************************************** 2023-11-01T16:55:08,688 ############################ 2023-11-01T16:55:08,689 # Package would be ignored # 2023-11-01T16:55:08,690 ############################ 2023-11-01T16:55:08,690 Python recognizes 'tests.test_data.mechanisms' as an importable package[^1], 2023-11-01T16:55:08,691 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,692 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,693 package, please make sure that 'tests.test_data.mechanisms' is explicitly added 2023-11-01T16:55:08,694 to the `packages` configuration field. 2023-11-01T16:55:08,702 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,711 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,716 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,744 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,745 If you don't want 'tests.test_data.mechanisms' to be distributed and are 2023-11-01T16:55:08,746 already explicitly excluding 'tests.test_data.mechanisms' via 2023-11-01T16:55:08,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,747 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,748 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,751 even if it does not contain any `.py` files. 2023-11-01T16:55:08,752 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,752 directory, all directories are treated like packages. 2023-11-01T16:55:08,753 ******************************************************************************** 2023-11-01T16:55:08,754 !! 2023-11-01T16:55:08,754 check.warn(importable) 2023-11-01T16:55:08,755 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.test_data.morphology' is absent from the `packages` configuration. 2023-11-01T16:55:08,755 !! 2023-11-01T16:55:08,756 ******************************************************************************** 2023-11-01T16:55:08,757 ############################ 2023-11-01T16:55:08,757 # Package would be ignored # 2023-11-01T16:55:08,758 ############################ 2023-11-01T16:55:08,758 Python recognizes 'tests.test_data.morphology' as an importable package[^1], 2023-11-01T16:55:08,759 but it is absent from setuptools' `packages` configuration. 2023-11-01T16:55:08,760 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-01T16:55:08,761 package, please make sure that 'tests.test_data.morphology' is explicitly added 2023-11-01T16:55:08,762 to the `packages` configuration field. 2023-11-01T16:55:08,763 Alternatively, you can also rely on setuptools' discovery methods 2023-11-01T16:55:08,763 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-01T16:55:08,764 instead of `find_packages(...)`/`find:`). 2023-11-01T16:55:08,765 You can read more about "package discovery" on setuptools documentation page: 2023-11-01T16:55:08,766 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-01T16:55:08,767 If you don't want 'tests.test_data.morphology' to be distributed and are 2023-11-01T16:55:08,767 already explicitly excluding 'tests.test_data.morphology' via 2023-11-01T16:55:08,768 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-01T16:55:08,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-01T16:55:08,769 combination with a more fine grained `package-data` configuration. 2023-11-01T16:55:08,770 You can read more about "package data files" on setuptools documentation page: 2023-11-01T16:55:08,771 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-01T16:55:08,772 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-01T16:55:08,773 even if it does not contain any `.py` files. 2023-11-01T16:55:08,773 On the other hand, currently there is no concept of package data 2023-11-01T16:55:08,773 directory, all directories are treated like packages. 2023-11-01T16:55:08,774 ******************************************************************************** 2023-11-01T16:55:08,776 !! 2023-11-01T16:55:08,779 check.warn(importable) 2023-11-01T16:55:08,783 creating build/lib/tests/test_data 2023-11-01T16:55:08,783 copying tests/test_data/final.json -> build/lib/tests/test_data 2023-11-01T16:55:08,784 copying tests/test_data/final_tmp.json -> build/lib/tests/test_data 2023-11-01T16:55:08,785 copying tests/test_data/test_APWaveform_320.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,785 copying tests/test_data/test_IV_-100.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,786 copying tests/test_data/test_RMPProtocol.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,786 copying tests/test_data/test_RinProtocol.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,787 copying tests/test_data/test_SpikeRec_600.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,787 copying tests/test_data/test_Step_200.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,788 copying tests/test_data/test_Step_280.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,788 copying tests/test_data/test_bAP.ca_ais.cai.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,789 copying tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,789 copying tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,790 copying tests/test_data/test_bAP.ca_soma.cai.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,790 copying tests/test_data/test_bAP.dend1.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,791 copying tests/test_data/test_bAP.dend2.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,791 copying tests/test_data/test_bAP.soma.v.csv -> build/lib/tests/test_data 2023-11-01T16:55:08,792 copying tests/test_data/test_features.json -> build/lib/tests/test_data 2023-11-01T16:55:08,792 copying tests/test_data/test_mechanisms.json -> build/lib/tests/test_data 2023-11-01T16:55:08,793 copying tests/test_data/test_parameters.json -> build/lib/tests/test_data 2023-11-01T16:55:08,793 copying tests/test_data/test_protocols.json -> build/lib/tests/test_data 2023-11-01T16:55:08,794 copying tests/test_data/test_recipes.json -> build/lib/tests/test_data 2023-11-01T16:55:08,794 creating build/lib/tests/test_data/config 2023-11-01T16:55:08,795 copying tests/test_data/config/config_dict.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,795 copying tests/test_data/config/features.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,796 copying tests/test_data/config/params.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,796 copying tests/test_data/config/params_restart.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,797 copying tests/test_data/config/protocols.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,797 copying tests/test_data/config/recipes.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,798 copying tests/test_data/config/recipes_restart.json -> build/lib/tests/test_data/config 2023-11-01T16:55:08,798 creating build/lib/tests/test_data/ephys_data 2023-11-01T16:55:08,799 copying tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/lib/tests/test_data/ephys_data 2023-11-01T16:55:08,800 creating build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,800 copying tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,801 copying tests/test_data/mechanisms/Ca_HVA2.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,801 copying tests/test_data/mechanisms/Ca_LVAst.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,802 copying tests/test_data/mechanisms/Ih.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,802 copying tests/test_data/mechanisms/K_Pst.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,803 copying tests/test_data/mechanisms/K_Tst.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,803 copying tests/test_data/mechanisms/NaTg.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,804 copying tests/test_data/mechanisms/Nap_Et2.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,804 copying tests/test_data/mechanisms/SK_E2.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,804 copying tests/test_data/mechanisms/SKv3_1.mod -> build/lib/tests/test_data/mechanisms 2023-11-01T16:55:08,805 creating build/lib/tests/test_data/morphology 2023-11-01T16:55:08,805 copying tests/test_data/morphology/C060114A5.asc -> build/lib/tests/test_data/morphology 2023-11-01T16:55:08,806 creating build/lib/bluepyemodel/export_emodel/templates 2023-11-01T16:55:08,806 copying bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-11-01T16:55:08,807 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-11-01T16:55:08,807 copying bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/lib/bluepyemodel/export_emodel/templates 2023-11-01T16:55:08,808 creating build/lib/bluepyemodel/ecode/data 2023-11-01T16:55:08,808 copying bluepyemodel/ecode/data/NoiseOU3.txt -> build/lib/bluepyemodel/ecode/data 2023-11-01T16:55:09,237 copying bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-11-01T16:55:09,274 copying bluepyemodel/ecode/data/WhiteNoise.txt -> build/lib/bluepyemodel/ecode/data 2023-11-01T16:55:09,743 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-01T16:55:09,743 !! 2023-11-01T16:55:09,744 ******************************************************************************** 2023-11-01T16:55:09,745 Please avoid running ``setup.py`` directly. 2023-11-01T16:55:09,746 Instead, use pypa/build, pypa/installer or other 2023-11-01T16:55:09,746 standards-based tools. 2023-11-01T16:55:09,748 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-01T16:55:09,748 ******************************************************************************** 2023-11-01T16:55:09,749 !! 2023-11-01T16:55:09,750 self.initialize_options() 2023-11-01T16:55:09,771 installing to build/bdist.linux-armv7l/wheel 2023-11-01T16:55:09,772 running install 2023-11-01T16:55:09,795 running install_lib 2023-11-01T16:55:09,823 creating build/bdist.linux-armv7l 2023-11-01T16:55:09,824 creating build/bdist.linux-armv7l/wheel 2023-11-01T16:55:09,825 creating build/bdist.linux-armv7l/wheel/tests 2023-11-01T16:55:09,827 creating build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-11-01T16:55:09,828 copying build/lib/tests/functional_tests/test_validation.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-11-01T16:55:09,830 copying build/lib/tests/functional_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-11-01T16:55:09,831 copying build/lib/tests/functional_tests/test_protocols.py -> build/bdist.linux-armv7l/wheel/tests/functional_tests 2023-11-01T16:55:09,833 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-11-01T16:55:09,836 creating build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,837 copying build/lib/tests/unit_tests/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,839 copying build/lib/tests/unit_tests/test_ecodes.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,841 copying build/lib/tests/unit_tests/test_emodelmetadata.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,843 copying build/lib/tests/unit_tests/test_local_access_point.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,845 copying build/lib/tests/unit_tests/test_optimisation.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,846 copying build/lib/tests/unit_tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,848 copying build/lib/tests/unit_tests/test_targets_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,850 copying build/lib/tests/unit_tests/test_fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,852 copying build/lib/tests/unit_tests/test_evaluator.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,854 copying build/lib/tests/unit_tests/test_model_parameters_configuration.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,856 copying build/lib/tests/unit_tests/test_validation_functions.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,858 copying build/lib/tests/unit_tests/test_model.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,859 copying build/lib/tests/unit_tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,861 copying build/lib/tests/unit_tests/test_emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/tests/unit_tests 2023-11-01T16:55:09,863 creating build/bdist.linux-armv7l/wheel/tests/test_models 2023-11-01T16:55:09,864 copying build/lib/tests/test_models/dummycells.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-11-01T16:55:09,866 copying build/lib/tests/test_models/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_models 2023-11-01T16:55:09,869 creating build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,869 copying build/lib/tests/test_data/test_protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,871 copying build/lib/tests/test_data/test_bAP.dend2.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,874 copying build/lib/tests/test_data/test_bAP.ca_ais.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,876 copying build/lib/tests/test_data/test_Step_200.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,883 copying build/lib/tests/test_data/test_bAP.dend1.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,885 copying build/lib/tests/test_data/test_bAP.ca_prox_basal.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,888 copying build/lib/tests/test_data/test_mechanisms.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,890 creating build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-11-01T16:55:09,891 copying build/lib/tests/test_data/ephys_data/C010600C1-MT-C1.nwb -> build/bdist.linux-armv7l/wheel/tests/test_data/ephys_data 2023-11-01T16:55:09,970 copying build/lib/tests/test_data/test_IV_-100.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,972 copying build/lib/tests/test_data/test_bAP.ca_soma.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,975 copying build/lib/tests/test_data/test_RMPProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,977 copying build/lib/tests/test_data/final.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,979 copying build/lib/tests/test_data/test_recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,982 creating build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,983 copying build/lib/tests/test_data/config/recipes.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,984 copying build/lib/tests/test_data/config/recipes_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,986 copying build/lib/tests/test_data/config/features.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,988 copying build/lib/tests/test_data/config/params.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,990 copying build/lib/tests/test_data/config/protocols.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,992 copying build/lib/tests/test_data/config/config_dict.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,994 copying build/lib/tests/test_data/config/params_restart.json -> build/bdist.linux-armv7l/wheel/tests/test_data/config 2023-11-01T16:55:09,996 copying build/lib/tests/test_data/test_SpikeRec_600.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:09,998 creating build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-11-01T16:55:09,999 copying build/lib/tests/test_data/morphology/C060114A5.asc -> build/bdist.linux-armv7l/wheel/tests/test_data/morphology 2023-11-01T16:55:10,011 copying build/lib/tests/test_data/test_features.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,013 copying build/lib/tests/test_data/test_Step_280.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,019 copying build/lib/tests/test_data/test_RinProtocol.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,021 copying build/lib/tests/test_data/test_parameters.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,023 copying build/lib/tests/test_data/final_tmp.json -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,025 copying build/lib/tests/test_data/test_bAP.ca_prox_apic.cai.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,028 creating build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,029 copying build/lib/tests/test_data/mechanisms/Ca_LVAst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,031 copying build/lib/tests/test_data/mechanisms/Nap_Et2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,033 copying build/lib/tests/test_data/mechanisms/NaTg.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,035 copying build/lib/tests/test_data/mechanisms/CaDynamics_DC0.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,036 copying build/lib/tests/test_data/mechanisms/SKv3_1.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,038 copying build/lib/tests/test_data/mechanisms/Ca_HVA2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,040 copying build/lib/tests/test_data/mechanisms/K_Pst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,041 copying build/lib/tests/test_data/mechanisms/SK_E2.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,043 copying build/lib/tests/test_data/mechanisms/Ih.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,045 copying build/lib/tests/test_data/mechanisms/K_Tst.mod -> build/bdist.linux-armv7l/wheel/tests/test_data/mechanisms 2023-11-01T16:55:10,047 copying build/lib/tests/test_data/test_APWaveform_320.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,050 copying build/lib/tests/test_data/test_bAP.soma.v.csv -> build/bdist.linux-armv7l/wheel/tests/test_data 2023-11-01T16:55:10,052 creating build/bdist.linux-armv7l/wheel/bluepyemodel 2023-11-01T16:55:10,054 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-11-01T16:55:10,055 creating build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-11-01T16:55:10,056 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-11-01T16:55:10,058 copying build/lib/bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-11-01T16:55:10,060 copying build/lib/bluepyemodel/export_emodel/templates/cell_template.jinja2 -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel/templates 2023-11-01T16:55:10,063 copying build/lib/bluepyemodel/export_emodel/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-11-01T16:55:10,065 copying build/lib/bluepyemodel/export_emodel/export_emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-11-01T16:55:10,067 copying build/lib/bluepyemodel/export_emodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/export_emodel 2023-11-01T16:55:10,069 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-11-01T16:55:10,069 copying build/lib/bluepyemodel/tasks/config.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-11-01T16:55:10,071 copying build/lib/bluepyemodel/tasks/luigi_custom.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-11-01T16:55:10,073 copying build/lib/bluepyemodel/tasks/luigi_tools.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-11-01T16:55:10,075 copying build/lib/bluepyemodel/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks 2023-11-01T16:55:10,078 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-11-01T16:55:10,078 copying build/lib/bluepyemodel/tasks/emodel_creation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-11-01T16:55:10,080 copying build/lib/bluepyemodel/tasks/emodel_creation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tasks/emodel_creation 2023-11-01T16:55:10,084 creating build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-11-01T16:55:10,084 copying build/lib/bluepyemodel/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-11-01T16:55:10,086 copying build/lib/bluepyemodel/optimisation/optimisation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/optimisation 2023-11-01T16:55:10,089 creating build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,090 copying build/lib/bluepyemodel/tools/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,092 copying build/lib/bluepyemodel/tools/mechanisms.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,094 copying build/lib/bluepyemodel/tools/morphology.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,096 copying build/lib/bluepyemodel/tools/search_pdfs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,098 copying build/lib/bluepyemodel/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,100 copying build/lib/bluepyemodel/tools/multiprocessing.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/tools 2023-11-01T16:55:10,102 creating build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-11-01T16:55:10,103 copying build/lib/bluepyemodel/access_point/access_point.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-11-01T16:55:10,106 copying build/lib/bluepyemodel/access_point/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-11-01T16:55:10,108 copying build/lib/bluepyemodel/access_point/local.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/access_point 2023-11-01T16:55:10,111 creating build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-11-01T16:55:10,112 copying build/lib/bluepyemodel/validation/validation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-11-01T16:55:10,114 copying build/lib/bluepyemodel/validation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-11-01T16:55:10,116 copying build/lib/bluepyemodel/validation/validation_functions.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/validation 2023-11-01T16:55:10,118 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,119 copying build/lib/bluepyemodel/ecode/sahp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,121 copying build/lib/bluepyemodel/ecode/dendrite.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,123 copying build/lib/bluepyemodel/ecode/iv.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,125 copying build/lib/bluepyemodel/ecode/firepattern.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,127 copying build/lib/bluepyemodel/ecode/noiseou3.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,129 copying build/lib/bluepyemodel/ecode/random_square_inputs.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,131 copying build/lib/bluepyemodel/ecode/dehyperpol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,133 copying build/lib/bluepyemodel/ecode/apwaveform.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,135 copying build/lib/bluepyemodel/ecode/idrest.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,137 copying build/lib/bluepyemodel/ecode/poscheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,139 copying build/lib/bluepyemodel/ecode/probampanmda_ems.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,141 copying build/lib/bluepyemodel/ecode/spikerec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,143 copying build/lib/bluepyemodel/ecode/subwhitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:10,145 creating build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-11-01T16:55:10,146 copying build/lib/bluepyemodel/ecode/data/NoiseOU3.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-11-01T16:55:10,582 copying build/lib/bluepyemodel/ecode/data/WhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-11-01T16:55:11,011 copying build/lib/bluepyemodel/ecode/data/SubWhiteNoise.txt -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode/data 2023-11-01T16:55:11,052 copying build/lib/bluepyemodel/ecode/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,053 copying build/lib/bluepyemodel/ecode/sinespec.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,055 copying build/lib/bluepyemodel/ecode/comb.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,058 copying build/lib/bluepyemodel/ecode/stimulus.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,059 copying build/lib/bluepyemodel/ecode/hyperdepol.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,066 copying build/lib/bluepyemodel/ecode/negcheops.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,068 copying build/lib/bluepyemodel/ecode/customfromfile.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,070 copying build/lib/bluepyemodel/ecode/noise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,071 copying build/lib/bluepyemodel/ecode/ramp.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,074 copying build/lib/bluepyemodel/ecode/whitenoise.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/ecode 2023-11-01T16:55:11,076 creating build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,077 copying build/lib/bluepyemodel/emodel_pipeline/emodel.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,079 copying build/lib/bluepyemodel/emodel_pipeline/emodel_metadata.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,081 copying build/lib/bluepyemodel/emodel_pipeline/emodel_settings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,084 copying build/lib/bluepyemodel/emodel_pipeline/emodel_pipeline.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,086 copying build/lib/bluepyemodel/emodel_pipeline/emodel_workflow.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,088 copying build/lib/bluepyemodel/emodel_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,090 copying build/lib/bluepyemodel/emodel_pipeline/emodel_script.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,091 copying build/lib/bluepyemodel/emodel_pipeline/plotting.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/emodel_pipeline 2023-11-01T16:55:11,095 creating build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,095 copying build/lib/bluepyemodel/model/neuron_model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,098 copying build/lib/bluepyemodel/model/model_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,100 copying build/lib/bluepyemodel/model/model.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,102 copying build/lib/bluepyemodel/model/utils.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,104 copying build/lib/bluepyemodel/model/distribution_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,106 copying build/lib/bluepyemodel/model/model_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,108 copying build/lib/bluepyemodel/model/parameter_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,110 copying build/lib/bluepyemodel/model/morphology_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,112 copying build/lib/bluepyemodel/model/mechanism_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,114 copying build/lib/bluepyemodel/model/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/model 2023-11-01T16:55:11,115 copying build/lib/bluepyemodel/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel 2023-11-01T16:55:11,117 creating build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,118 copying build/lib/bluepyemodel/efeatures_extraction/target.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,120 copying build/lib/bluepyemodel/efeatures_extraction/auto_targets.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,122 copying build/lib/bluepyemodel/efeatures_extraction/targets_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,125 copying build/lib/bluepyemodel/efeatures_extraction/targets_configurator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,127 copying build/lib/bluepyemodel/efeatures_extraction/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,128 copying build/lib/bluepyemodel/efeatures_extraction/efeatures_extraction.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,131 copying build/lib/bluepyemodel/efeatures_extraction/trace_file.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/efeatures_extraction 2023-11-01T16:55:11,133 creating build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,134 copying build/lib/bluepyemodel/evaluation/evaluation.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,137 copying build/lib/bluepyemodel/evaluation/efel_feature_bpem.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,139 copying build/lib/bluepyemodel/evaluation/protocols.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,141 copying build/lib/bluepyemodel/evaluation/protocol_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,143 copying build/lib/bluepyemodel/evaluation/recordings.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,145 copying build/lib/bluepyemodel/evaluation/efeature_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,147 copying build/lib/bluepyemodel/evaluation/modifiers.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,149 copying build/lib/bluepyemodel/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,151 copying build/lib/bluepyemodel/evaluation/evaluator.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,154 copying build/lib/bluepyemodel/evaluation/fitness_calculator_configuration.py -> build/bdist.linux-armv7l/wheel/bluepyemodel/evaluation 2023-11-01T16:55:11,156 running install_egg_info 2023-11-01T16:55:11,185 Copying bluepyemodel.egg-info to build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.58-py3.11.egg-info 2023-11-01T16:55:11,196 running install_scripts 2023-11-01T16:55:11,219 creating build/bdist.linux-armv7l/wheel/bluepyemodel-0.0.58.dist-info/WHEEL 2023-11-01T16:55:11,221 creating '/tmp/pip-wheel-tjvw5me1/bluepyemodel-0.0.58-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-01T16:55:11,223 adding 'bluepyemodel/__init__.py' 2023-11-01T16:55:11,226 adding 'bluepyemodel/access_point/__init__.py' 2023-11-01T16:55:11,228 adding 'bluepyemodel/access_point/access_point.py' 2023-11-01T16:55:11,231 adding 'bluepyemodel/access_point/local.py' 2023-11-01T16:55:11,234 adding 'bluepyemodel/ecode/__init__.py' 2023-11-01T16:55:11,235 adding 'bluepyemodel/ecode/apwaveform.py' 2023-11-01T16:55:11,237 adding 'bluepyemodel/ecode/comb.py' 2023-11-01T16:55:11,238 adding 'bluepyemodel/ecode/customfromfile.py' 2023-11-01T16:55:11,240 adding 'bluepyemodel/ecode/dehyperpol.py' 2023-11-01T16:55:11,241 adding 'bluepyemodel/ecode/dendrite.py' 2023-11-01T16:55:11,243 adding 'bluepyemodel/ecode/firepattern.py' 2023-11-01T16:55:11,244 adding 'bluepyemodel/ecode/hyperdepol.py' 2023-11-01T16:55:11,246 adding 'bluepyemodel/ecode/idrest.py' 2023-11-01T16:55:11,247 adding 'bluepyemodel/ecode/iv.py' 2023-11-01T16:55:11,249 adding 'bluepyemodel/ecode/negcheops.py' 2023-11-01T16:55:11,250 adding 'bluepyemodel/ecode/noise.py' 2023-11-01T16:55:11,251 adding 'bluepyemodel/ecode/noiseou3.py' 2023-11-01T16:55:11,253 adding 'bluepyemodel/ecode/poscheops.py' 2023-11-01T16:55:11,255 adding 'bluepyemodel/ecode/probampanmda_ems.py' 2023-11-01T16:55:11,256 adding 'bluepyemodel/ecode/ramp.py' 2023-11-01T16:55:11,258 adding 'bluepyemodel/ecode/random_square_inputs.py' 2023-11-01T16:55:11,260 adding 'bluepyemodel/ecode/sahp.py' 2023-11-01T16:55:11,261 adding 'bluepyemodel/ecode/sinespec.py' 2023-11-01T16:55:11,263 adding 'bluepyemodel/ecode/spikerec.py' 2023-11-01T16:55:11,264 adding 'bluepyemodel/ecode/stimulus.py' 2023-11-01T16:55:11,266 adding 'bluepyemodel/ecode/subwhitenoise.py' 2023-11-01T16:55:11,267 adding 'bluepyemodel/ecode/whitenoise.py' 2023-11-01T16:55:13,694 adding 'bluepyemodel/ecode/data/NoiseOU3.txt' 2023-11-01T16:55:14,141 adding 'bluepyemodel/ecode/data/SubWhiteNoise.txt' 2023-11-01T16:55:16,540 adding 'bluepyemodel/ecode/data/WhiteNoise.txt' 2023-11-01T16:55:16,784 adding 'bluepyemodel/efeatures_extraction/__init__.py' 2023-11-01T16:55:16,785 adding 'bluepyemodel/efeatures_extraction/auto_targets.py' 2023-11-01T16:55:16,787 adding 'bluepyemodel/efeatures_extraction/efeatures_extraction.py' 2023-11-01T16:55:16,788 adding 'bluepyemodel/efeatures_extraction/target.py' 2023-11-01T16:55:16,790 adding 'bluepyemodel/efeatures_extraction/targets_configuration.py' 2023-11-01T16:55:16,791 adding 'bluepyemodel/efeatures_extraction/targets_configurator.py' 2023-11-01T16:55:16,792 adding 'bluepyemodel/efeatures_extraction/trace_file.py' 2023-11-01T16:55:16,794 adding 'bluepyemodel/emodel_pipeline/__init__.py' 2023-11-01T16:55:16,795 adding 'bluepyemodel/emodel_pipeline/emodel.py' 2023-11-01T16:55:16,797 adding 'bluepyemodel/emodel_pipeline/emodel_metadata.py' 2023-11-01T16:55:16,799 adding 'bluepyemodel/emodel_pipeline/emodel_pipeline.py' 2023-11-01T16:55:16,800 adding 'bluepyemodel/emodel_pipeline/emodel_script.py' 2023-11-01T16:55:16,802 adding 'bluepyemodel/emodel_pipeline/emodel_settings.py' 2023-11-01T16:55:16,804 adding 'bluepyemodel/emodel_pipeline/emodel_workflow.py' 2023-11-01T16:55:16,808 adding 'bluepyemodel/emodel_pipeline/plotting.py' 2023-11-01T16:55:16,810 adding 'bluepyemodel/evaluation/__init__.py' 2023-11-01T16:55:16,811 adding 'bluepyemodel/evaluation/efeature_configuration.py' 2023-11-01T16:55:16,813 adding 'bluepyemodel/evaluation/efel_feature_bpem.py' 2023-11-01T16:55:16,815 adding 'bluepyemodel/evaluation/evaluation.py' 2023-11-01T16:55:16,818 adding 'bluepyemodel/evaluation/evaluator.py' 2023-11-01T16:55:16,821 adding 'bluepyemodel/evaluation/fitness_calculator_configuration.py' 2023-11-01T16:55:16,823 adding 'bluepyemodel/evaluation/modifiers.py' 2023-11-01T16:55:16,824 adding 'bluepyemodel/evaluation/protocol_configuration.py' 2023-11-01T16:55:16,827 adding 'bluepyemodel/evaluation/protocols.py' 2023-11-01T16:55:16,829 adding 'bluepyemodel/evaluation/recordings.py' 2023-11-01T16:55:16,831 adding 'bluepyemodel/export_emodel/__init__.py' 2023-11-01T16:55:16,832 adding 'bluepyemodel/export_emodel/export_emodel.py' 2023-11-01T16:55:16,834 adding 'bluepyemodel/export_emodel/utils.py' 2023-11-01T16:55:16,836 adding 'bluepyemodel/export_emodel/templates/cell_template.jinja2' 2023-11-01T16:55:16,837 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus.jinja2' 2023-11-01T16:55:16,839 adding 'bluepyemodel/export_emodel/templates/cell_template_neurodamus_sbo.jinja2' 2023-11-01T16:55:16,841 adding 'bluepyemodel/model/__init__.py' 2023-11-01T16:55:16,842 adding 'bluepyemodel/model/distribution_configuration.py' 2023-11-01T16:55:16,844 adding 'bluepyemodel/model/mechanism_configuration.py' 2023-11-01T16:55:16,846 adding 'bluepyemodel/model/model.py' 2023-11-01T16:55:16,847 adding 'bluepyemodel/model/model_configuration.py' 2023-11-01T16:55:16,848 adding 'bluepyemodel/model/model_configurator.py' 2023-11-01T16:55:16,850 adding 'bluepyemodel/model/morphology_configuration.py' 2023-11-01T16:55:16,853 adding 'bluepyemodel/model/neuron_model_configuration.py' 2023-11-01T16:55:16,854 adding 'bluepyemodel/model/parameter_configuration.py' 2023-11-01T16:55:16,855 adding 'bluepyemodel/model/utils.py' 2023-11-01T16:55:16,857 adding 'bluepyemodel/optimisation/__init__.py' 2023-11-01T16:55:16,859 adding 'bluepyemodel/optimisation/optimisation.py' 2023-11-01T16:55:16,861 adding 'bluepyemodel/tasks/__init__.py' 2023-11-01T16:55:16,862 adding 'bluepyemodel/tasks/config.py' 2023-11-01T16:55:16,863 adding 'bluepyemodel/tasks/luigi_custom.py' 2023-11-01T16:55:16,865 adding 'bluepyemodel/tasks/luigi_tools.py' 2023-11-01T16:55:16,867 adding 'bluepyemodel/tasks/emodel_creation/__init__.py' 2023-11-01T16:55:16,870 adding 'bluepyemodel/tasks/emodel_creation/optimisation.py' 2023-11-01T16:55:16,872 adding 'bluepyemodel/tools/__init__.py' 2023-11-01T16:55:16,874 adding 'bluepyemodel/tools/mechanisms.py' 2023-11-01T16:55:16,875 adding 'bluepyemodel/tools/morphology.py' 2023-11-01T16:55:16,876 adding 'bluepyemodel/tools/multiprocessing.py' 2023-11-01T16:55:16,878 adding 'bluepyemodel/tools/search_pdfs.py' 2023-11-01T16:55:16,879 adding 'bluepyemodel/tools/utils.py' 2023-11-01T16:55:16,881 adding 'bluepyemodel/validation/__init__.py' 2023-11-01T16:55:16,882 adding 'bluepyemodel/validation/validation.py' 2023-11-01T16:55:16,883 adding 'bluepyemodel/validation/validation_functions.py' 2023-11-01T16:55:16,886 adding 'tests/__init__.py' 2023-11-01T16:55:16,887 adding 'tests/functional_tests/__init__.py' 2023-11-01T16:55:16,888 adding 'tests/functional_tests/test_protocols.py' 2023-11-01T16:55:16,890 adding 'tests/functional_tests/test_validation.py' 2023-11-01T16:55:16,893 adding 'tests/test_data/final.json' 2023-11-01T16:55:16,895 adding 'tests/test_data/final_tmp.json' 2023-11-01T16:55:16,900 adding 'tests/test_data/test_APWaveform_320.soma.v.csv' 2023-11-01T16:55:16,903 adding 'tests/test_data/test_IV_-100.soma.v.csv' 2023-11-01T16:55:16,904 adding 'tests/test_data/test_RMPProtocol.soma.v.csv' 2023-11-01T16:55:16,906 adding 'tests/test_data/test_RinProtocol.soma.v.csv' 2023-11-01T16:55:16,908 adding 'tests/test_data/test_SpikeRec_600.soma.v.csv' 2023-11-01T16:55:16,974 adding 'tests/test_data/test_Step_200.soma.v.csv' 2023-11-01T16:55:17,047 adding 'tests/test_data/test_Step_280.soma.v.csv' 2023-11-01T16:55:17,053 adding 'tests/test_data/test_bAP.ca_ais.cai.csv' 2023-11-01T16:55:17,056 adding 'tests/test_data/test_bAP.ca_prox_apic.cai.csv' 2023-11-01T16:55:17,059 adding 'tests/test_data/test_bAP.ca_prox_basal.cai.csv' 2023-11-01T16:55:17,063 adding 'tests/test_data/test_bAP.ca_soma.cai.csv' 2023-11-01T16:55:17,066 adding 'tests/test_data/test_bAP.dend1.v.csv' 2023-11-01T16:55:17,070 adding 'tests/test_data/test_bAP.dend2.v.csv' 2023-11-01T16:55:17,073 adding 'tests/test_data/test_bAP.soma.v.csv' 2023-11-01T16:55:17,076 adding 'tests/test_data/test_features.json' 2023-11-01T16:55:17,077 adding 'tests/test_data/test_mechanisms.json' 2023-11-01T16:55:17,078 adding 'tests/test_data/test_parameters.json' 2023-11-01T16:55:17,079 adding 'tests/test_data/test_protocols.json' 2023-11-01T16:55:17,081 adding 'tests/test_data/test_recipes.json' 2023-11-01T16:55:17,082 adding 'tests/test_data/config/config_dict.json' 2023-11-01T16:55:17,084 adding 'tests/test_data/config/features.json' 2023-11-01T16:55:17,085 adding 'tests/test_data/config/params.json' 2023-11-01T16:55:17,087 adding 'tests/test_data/config/params_restart.json' 2023-11-01T16:55:17,088 adding 'tests/test_data/config/protocols.json' 2023-11-01T16:55:17,089 adding 'tests/test_data/config/recipes.json' 2023-11-01T16:55:17,090 adding 'tests/test_data/config/recipes_restart.json' 2023-11-01T16:55:17,480 adding 'tests/test_data/ephys_data/C010600C1-MT-C1.nwb' 2023-11-01T16:55:17,523 adding 'tests/test_data/mechanisms/CaDynamics_DC0.mod' 2023-11-01T16:55:17,525 adding 'tests/test_data/mechanisms/Ca_HVA2.mod' 2023-11-01T16:55:17,526 adding 'tests/test_data/mechanisms/Ca_LVAst.mod' 2023-11-01T16:55:17,527 adding 'tests/test_data/mechanisms/Ih.mod' 2023-11-01T16:55:17,528 adding 'tests/test_data/mechanisms/K_Pst.mod' 2023-11-01T16:55:17,530 adding 'tests/test_data/mechanisms/K_Tst.mod' 2023-11-01T16:55:17,531 adding 'tests/test_data/mechanisms/NaTg.mod' 2023-11-01T16:55:17,532 adding 'tests/test_data/mechanisms/Nap_Et2.mod' 2023-11-01T16:55:17,534 adding 'tests/test_data/mechanisms/SK_E2.mod' 2023-11-01T16:55:17,535 adding 'tests/test_data/mechanisms/SKv3_1.mod' 2023-11-01T16:55:17,609 adding 'tests/test_data/morphology/C060114A5.asc' 2023-11-01T16:55:17,615 adding 'tests/test_models/__init__.py' 2023-11-01T16:55:17,616 adding 'tests/test_models/dummycells.py' 2023-11-01T16:55:17,618 adding 'tests/unit_tests/__init__.py' 2023-11-01T16:55:17,621 adding 'tests/unit_tests/test_ecodes.py' 2023-11-01T16:55:17,622 adding 'tests/unit_tests/test_emodel_pipeline.py' 2023-11-01T16:55:17,624 adding 'tests/unit_tests/test_emodelmetadata.py' 2023-11-01T16:55:17,625 adding 'tests/unit_tests/test_evaluator.py' 2023-11-01T16:55:17,627 adding 'tests/unit_tests/test_fitness_calculator_configuration.py' 2023-11-01T16:55:17,628 adding 'tests/unit_tests/test_local_access_point.py' 2023-11-01T16:55:17,629 adding 'tests/unit_tests/test_model.py' 2023-11-01T16:55:17,631 adding 'tests/unit_tests/test_model_parameters_configuration.py' 2023-11-01T16:55:17,632 adding 'tests/unit_tests/test_optimisation.py' 2023-11-01T16:55:17,633 adding 'tests/unit_tests/test_plotting.py' 2023-11-01T16:55:17,635 adding 'tests/unit_tests/test_targets_configuration.py' 2023-11-01T16:55:17,636 adding 'tests/unit_tests/test_tools.py' 2023-11-01T16:55:17,637 adding 'tests/unit_tests/test_validation_functions.py' 2023-11-01T16:55:17,638 adding 'bluepyemodel-0.0.58.dist-info/AUTHORS.txt' 2023-11-01T16:55:17,640 adding 'bluepyemodel-0.0.58.dist-info/COPYING' 2023-11-01T16:55:17,641 adding 'bluepyemodel-0.0.58.dist-info/LICENSE.txt' 2023-11-01T16:55:17,643 adding 'bluepyemodel-0.0.58.dist-info/METADATA' 2023-11-01T16:55:17,644 adding 'bluepyemodel-0.0.58.dist-info/WHEEL' 2023-11-01T16:55:17,645 adding 'bluepyemodel-0.0.58.dist-info/top_level.txt' 2023-11-01T16:55:17,647 adding 'bluepyemodel-0.0.58.dist-info/RECORD' 2023-11-01T16:55:17,778 removing build/bdist.linux-armv7l/wheel 2023-11-01T16:55:17,962 Building wheel for bluepyemodel (setup.py): finished with status 'done' 2023-11-01T16:55:18,110 Created wheel for bluepyemodel: filename=bluepyemodel-0.0.58-py3-none-any.whl size=12439882 sha256=96ce84008a5c18dc09a95a9d740630e82b4dd7addff2f3a8fa6d5e113dee4b6d 2023-11-01T16:55:18,112 Stored in directory: /tmp/pip-ephem-wheel-cache-zo4ghrb9/wheels/1c/c3/6e/5ac10097e7f990ba51a1851c7955fbba7a656b7c14f58dce38 2023-11-01T16:55:18,132 Successfully built bluepyemodel 2023-11-01T16:55:18,447 Removed build tracker: '/tmp/pip-build-tracker-jpmxy397'