2023-11-01T23:29:58,048 Created temporary directory: /tmp/pip-build-tracker-9lm4gn_z 2023-11-01T23:29:58,049 Initialized build tracking at /tmp/pip-build-tracker-9lm4gn_z 2023-11-01T23:29:58,049 Created build tracker: /tmp/pip-build-tracker-9lm4gn_z 2023-11-01T23:29:58,050 Entered build tracker: /tmp/pip-build-tracker-9lm4gn_z 2023-11-01T23:29:58,051 Created temporary directory: /tmp/pip-wheel-ugexd6o7 2023-11-01T23:29:58,055 Created temporary directory: /tmp/pip-ephem-wheel-cache-jacvdv7x 2023-11-01T23:29:58,081 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-01T23:29:58,085 2 location(s) to search for versions of genomedata: 2023-11-01T23:29:58,085 * https://pypi.org/simple/genomedata/ 2023-11-01T23:29:58,085 * https://www.piwheels.org/simple/genomedata/ 2023-11-01T23:29:58,086 Fetching project page and analyzing links: https://pypi.org/simple/genomedata/ 2023-11-01T23:29:58,087 Getting page https://pypi.org/simple/genomedata/ 2023-11-01T23:29:58,088 Found index url https://pypi.org/simple/ 2023-11-01T23:29:58,229 Fetched page https://pypi.org/simple/genomedata/ as application/vnd.pypi.simple.v1+json 2023-11-01T23:29:58,237 Found link https://files.pythonhosted.org/packages/9f/d0/c09cd33ccd955e3585dd76eb00c0aa755f188ae653e0dd92eea33ab8d07b/genomedata-0.1.4.tar.gz (from https://pypi.org/simple/genomedata/), version: 0.1.4 2023-11-01T23:29:58,238 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9b/fa/f10624ccb807792a8070ed943c3603ae6adea70a6ea5c47ca191e54cf7e8/genomedata-0.1.5-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,238 Found link https://files.pythonhosted.org/packages/d1/bd/64c3331f416dda32d38ca8f4c232926d0e8b2fd1ddf9c7827dd2036c19a9/genomedata-0.1.5.tar.gz (from https://pypi.org/simple/genomedata/), version: 0.1.5 2023-11-01T23:29:58,239 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ee/e2/c888d35113765be0c1083eebe734a4b743741c9eeb758ba1ceae4be03965/genomedata-0.1.6-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,240 Found link https://files.pythonhosted.org/packages/db/3c/3a9f9441a2d9b07eaf46a3bc8592fc5c00705ab047fff6d1bf83738187c2/genomedata-0.1.6.tar.gz (from https://pypi.org/simple/genomedata/), version: 0.1.6 2023-11-01T23:29:58,240 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e6/50/9278c9bb1197cf4890aba00e2694452b9543009717d6ef0b7a0abc331f73/genomedata-1.0.0-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,241 Found link https://files.pythonhosted.org/packages/53/7b/952cb445c3f19ff3fcc5858d1aadd6b7f2a2bf1aedaf3c69f09384008bc7/genomedata-1.0.0.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.0.0 2023-11-01T23:29:58,242 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/e3/e5/715b60d2ccd6e1b09dc00013885ddc91d0d00a13abba13d0b4ae5d0e655f/genomedata-1.0.1-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,243 Found link https://files.pythonhosted.org/packages/ca/6f/029e8fa74efe34958ab94c1dbe09693a16f0dbd3ff9277a26c1e2e4bc06d/genomedata-1.0.1.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.0.1 2023-11-01T23:29:58,243 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/02/23/b7f1ae2c30e6c8aa9a53205a090851feea5a09298a268d6aa4315b60068b/genomedata-1.1.0-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,244 Found link https://files.pythonhosted.org/packages/d3/a5/276928eb1ede8c99467d8dabb75498304a2262e030fea4b8bd217f0c047a/genomedata-1.1.0.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.1.0 2023-11-01T23:29:58,245 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/3c/3a/186c602e584cfc0c76b13b0bcf554e82648aae6f8e0a6836df258ea23418/genomedata-1.1.1-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,245 Found link https://files.pythonhosted.org/packages/41/be/56ca09d389d8fa4406dde7a9b32d9953fb9ba78d02e0fc640b4946503696/genomedata-1.1.1.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.1.1 2023-11-01T23:29:58,246 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/cb/15/eccac8c39dcd9c48dafd5a8ad77f77e88a2707e527eb765df112ecd59f3b/genomedata-1.2.0-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,247 Found link https://files.pythonhosted.org/packages/ee/b4/9f05a26671745bf9bb0c657b65eb3c6973a5adea7c8172c40efcd7bee6d8/genomedata-1.2.0.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.2.0 2023-11-01T23:29:58,248 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/93/5c/7a96b02d1a0d7c33b43710d321371d3fd748059ae98d57c07863944f0b2b/genomedata-1.2.1-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,248 Found link https://files.pythonhosted.org/packages/84/4d/75af402b72884de9a8f4a7b04bc2ecf367c00286fac827f83ff840f926b6/genomedata-1.2.1.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.2.1 2023-11-01T23:29:58,249 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9a/f8/fe1ea521ccf7bed51cbc506eee09bde20cd7a13be074a66bf260c9ca00c2/genomedata-1.2.2-py2.5.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,249 Found link https://files.pythonhosted.org/packages/29/2f/2daf3f2c913c2427c5f72f8bc6daa800ddb6854d923488ec03b05096ace6/genomedata-1.2.2.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.2.2 2023-11-01T23:29:58,250 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/9d/5f/10e8c1950fb2444d9977d8e063b088e23e027264b8060b671a76b371e6c2/genomedata-1.3.2-py2.7.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,250 Found link https://files.pythonhosted.org/packages/c2/ff/01de9d35322f254787541ae050d6805dda9bb6d57fbfd57a1f0ce1996405/genomedata-1.3.2.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.3.2 2023-11-01T23:29:58,251 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/5d/e7/b8880f2b7c14186cd3c608dd2164ed854624899458bad7ed2a5ffe73a41d/genomedata-1.3.3-py2.7.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,252 Found link https://files.pythonhosted.org/packages/8a/fe/6589545018763ed382eef6206bbedd924100d9b3795ad63b982f1accb030/genomedata-1.3.3.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.3.3 2023-11-01T23:29:58,252 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f9/60/7a38a31a5f456347baad86b9fc3ff72573b974711bee55be7fb571209991/genomedata-1.3.4-py2.7.egg (from https://pypi.org/simple/genomedata/) 2023-11-01T23:29:58,253 Found link https://files.pythonhosted.org/packages/97/2c/ed8252cf78fed9a0b83bcc3e5ad203502994e1ee4498d9323eb06a37c76e/genomedata-1.3.4.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.3.4 2023-11-01T23:29:58,254 Found link https://files.pythonhosted.org/packages/ae/c8/504b3674a150128e61f5cd075900cc2139e0ac48dabdb70ddf314fbe8424/genomedata-1.3.5.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.3.5 2023-11-01T23:29:58,255 Found link https://files.pythonhosted.org/packages/cd/3a/a466d62a79ccc0926f32c9998f712c14140a0593fc9a487504b202dd18bd/genomedata-1.3.6.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.3.6 2023-11-01T23:29:58,255 Found link https://files.pythonhosted.org/packages/8d/ab/60c0ba4affa11f2b2a413aa39956bc79707ef6b6fa9b9712e2d1d412442b/genomedata-1.4.0.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.4.0 2023-11-01T23:29:58,256 Found link https://files.pythonhosted.org/packages/53/1f/2e267e7607ac3a8e85e79238139fc4c0aa66c714ec2c51ed30422790ca45/genomedata-1.4.1.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.4.1 2023-11-01T23:29:58,257 Found link https://files.pythonhosted.org/packages/52/e0/c22e9b44a897472cf7c315d41ca50b1454ea7e650cda88326f55682ac328/genomedata-1.4.2.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.4.2 2023-11-01T23:29:58,257 Found link https://files.pythonhosted.org/packages/a4/fb/5f226c2d1a7b0c30155ef1bc766a57a37b679638eca9b03af587c266932d/genomedata-1.4.3.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.4.3 2023-11-01T23:29:58,258 Found link https://files.pythonhosted.org/packages/ae/a8/095d15019a28d370b0f81a5adb289828dee17b5ac5e069518024526996f6/genomedata-1.4.4.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.4.4 2023-11-01T23:29:58,259 Found link https://files.pythonhosted.org/packages/3b/a2/690e07a7b11ae2f1892f8858a19b725e7477e801da69074eb84fdee664f2/genomedata-1.5.0.tar.gz (from https://pypi.org/simple/genomedata/), version: 1.5.0 2023-11-01T23:29:58,259 Skipping link: No binaries permitted for genomedata: https://files.pythonhosted.org/packages/83/d3/e0d08c4c6d9b81a8f2de3d31004fd175e1adf8b7bdd1dfa97181559b6785/genomedata-1.6.0-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,260 Found link https://files.pythonhosted.org/packages/c8/3e/5c129fe3741973f82237960de335321215ffdb52fa6408e2a0485e1f8540/genomedata-1.6.0.tar.gz (from https://pypi.org/simple/genomedata/) (requires-python:>=3.7), version: 1.6.0 2023-11-01T23:29:58,261 Skipping link: No binaries permitted for genomedata: https://files.pythonhosted.org/packages/49/95/a93e72f833d33b8172c84ee33755fc7436a5a24fb2d6d5cc1c01d2755d93/genomedata-1.7.0-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,262 Found link https://files.pythonhosted.org/packages/fa/89/7fceac8d18f037b3a9ad34bb0e77f2b50fbac68ae41c2841c3a12ab38abb/genomedata-1.7.0.tar.gz (from https://pypi.org/simple/genomedata/) (requires-python:>=3.7), version: 1.7.0 2023-11-01T23:29:58,262 Skipping link: No binaries permitted for genomedata: https://files.pythonhosted.org/packages/86/8d/978aac04cc015d144c15972a6e975a4796fb5d240d5fc3fbb6578e0815e3/genomedata-1.7.1-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,263 Found link https://files.pythonhosted.org/packages/af/5a/0861b58738df9806ddcdd0cbf980b5e6f79f0d1ea9a5950d792f2b21472e/genomedata-1.7.1.tar.gz (from https://pypi.org/simple/genomedata/) (requires-python:>=3.7), version: 1.7.1 2023-11-01T23:29:58,264 Skipping link: No binaries permitted for genomedata: https://files.pythonhosted.org/packages/67/e6/408f71d4987f2d43ab56601355a49bffced75dba93359c7f32274b2b2e01/genomedata-1.7.2-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/genomedata/) (requires-python:>=3.9) 2023-11-01T23:29:58,265 Found link https://files.pythonhosted.org/packages/a8/19/2bc10574fac2b19ca807c436b5f415f4220348dfb1904cd5b138301066e1/genomedata-1.7.2.tar.gz (from https://pypi.org/simple/genomedata/) (requires-python:>=3.9), version: 1.7.2 2023-11-01T23:29:58,266 Fetching project page and analyzing links: https://www.piwheels.org/simple/genomedata/ 2023-11-01T23:29:58,266 Getting page https://www.piwheels.org/simple/genomedata/ 2023-11-01T23:29:58,268 Found index url https://www.piwheels.org/simple/ 2023-11-01T23:29:58,445 Fetched page https://www.piwheels.org/simple/genomedata/ as text/html 2023-11-01T23:29:58,449 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.7.2-cp39-abi3-linux_armv7l.whl#sha256=cfcb28a0128d40c3444d027b4fc51c6a4288eea8638d33bc9dcaae18892cdd52 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.9) 2023-11-01T23:29:58,450 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.7.2-cp39-abi3-linux_armv6l.whl#sha256=cfcb28a0128d40c3444d027b4fc51c6a4288eea8638d33bc9dcaae18892cdd52 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.9) 2023-11-01T23:29:58,451 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.7.1-cp37-abi3-linux_armv7l.whl#sha256=50c9111b17f2e3ac9af8f894e1c3017723c0f42963964727855d5403959b29a9 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,451 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.7.1-cp37-abi3-linux_armv6l.whl#sha256=50c9111b17f2e3ac9af8f894e1c3017723c0f42963964727855d5403959b29a9 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,452 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.7.0-cp37-abi3-linux_armv7l.whl#sha256=967a81218dd10eb1de7b151261dd570fa5a75f2b7c47f1c798e75e003dd3ff84 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,453 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.7.0-cp37-abi3-linux_armv6l.whl#sha256=967a81218dd10eb1de7b151261dd570fa5a75f2b7c47f1c798e75e003dd3ff84 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,453 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.6.0-cp37-abi3-linux_armv7l.whl#sha256=1dfaaa9f1910becb35328b88cf4ea1866bfb0efb37d60b0078b1d0cb7247f345 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,454 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.6.0-cp37-abi3-linux_armv6l.whl#sha256=1dfaaa9f1910becb35328b88cf4ea1866bfb0efb37d60b0078b1d0cb7247f345 (from https://www.piwheels.org/simple/genomedata/) (requires-python:>=3.7) 2023-11-01T23:29:58,454 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.5.0-py3-none-any.whl#sha256=52913a08eca7171a79a79fb59e558dd3deb2ecfbedd3719f7e79823d6c16e8de (from https://www.piwheels.org/simple/genomedata/) 2023-11-01T23:29:58,455 Skipping link: No binaries permitted for genomedata: https://www.piwheels.org/simple/genomedata/genomedata-1.4.4-py3-none-any.whl#sha256=947997fc388a1793e361a08e235f4dc03b882243eeae4727b245a5b3a49ae466 (from https://www.piwheels.org/simple/genomedata/) 2023-11-01T23:29:58,455 Skipping link: not a file: https://www.piwheels.org/simple/genomedata/ 2023-11-01T23:29:58,456 Skipping link: not a file: https://pypi.org/simple/genomedata/ 2023-11-01T23:29:58,479 Given no hashes to check 1 links for project 'genomedata': discarding no candidates 2023-11-01T23:29:58,499 Collecting genomedata==1.7.2 2023-11-01T23:29:58,501 Created temporary directory: /tmp/pip-unpack-d6q5e7gm 2023-11-01T23:29:58,645 Downloading genomedata-1.7.2.tar.gz (1.9 MB) 2023-11-01T23:29:59,409 Added genomedata==1.7.2 from https://files.pythonhosted.org/packages/a8/19/2bc10574fac2b19ca807c436b5f415f4220348dfb1904cd5b138301066e1/genomedata-1.7.2.tar.gz to build tracker '/tmp/pip-build-tracker-9lm4gn_z' 2023-11-01T23:29:59,414 Created temporary directory: /tmp/pip-build-env-n6l1emtu 2023-11-01T23:29:59,419 Installing build dependencies: started 2023-11-01T23:29:59,421 Running command pip subprocess to install build dependencies 2023-11-01T23:30:00,613 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-01T23:30:01,129 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-01T23:30:02,723 Collecting setuptools 2023-11-01T23:30:02,849 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-11-01T23:30:03,735 Collecting setuptools-scm 2023-11-01T23:30:03,864 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2023-11-01T23:30:04,464 Collecting packaging>=20 (from setuptools-scm) 2023-11-01T23:30:05,207 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2023-11-01T23:30:05,413 Collecting typing-extensions (from setuptools-scm) 2023-11-01T23:30:05,450 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.8.0-py3-none-any.whl (31 kB) 2023-11-01T23:30:13,356 Installing collected packages: typing-extensions, setuptools, packaging, setuptools-scm 2023-11-01T23:30:21,897 Successfully installed packaging-23.2 setuptools-68.2.2 setuptools-scm-8.0.4 typing-extensions-4.8.0 2023-11-01T23:30:22,235 [notice] A new release of pip is available: 23.2.1 -> 23.3.1 2023-11-01T23:30:22,235 [notice] To update, run: python3 -m pip install --upgrade pip 2023-11-01T23:30:22,520 Installing build dependencies: finished with status 'done' 2023-11-01T23:30:22,524 Getting requirements to build wheel: started 2023-11-01T23:30:22,525 Running command Getting requirements to build wheel 2023-11-01T23:30:24,754 running egg_info 2023-11-01T23:30:24,760 writing genomedata.egg-info/PKG-INFO 2023-11-01T23:30:24,763 writing dependency_links to genomedata.egg-info/dependency_links.txt 2023-11-01T23:30:24,766 writing entry points to genomedata.egg-info/entry_points.txt 2023-11-01T23:30:24,768 writing requirements to genomedata.egg-info/requires.txt 2023-11-01T23:30:24,770 writing top-level names to genomedata.egg-info/top_level.txt 2023-11-01T23:30:24,816 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-01T23:30:24,821 reading manifest file 'genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:25,135 reading manifest template 'MANIFEST.in' 2023-11-01T23:30:25,136 no previously-included directories found matching 'Docker' 2023-11-01T23:30:25,137 no previously-included directories found matching '.github' 2023-11-01T23:30:25,138 warning: no previously-included files found matching '.gitignore' 2023-11-01T23:30:25,139 warning: no previously-included files found matching '.readthedocs.yml' 2023-11-01T23:30:25,140 warning: no previously-included files found matching 'environment.yml' 2023-11-01T23:30:25,140 adding license file 'LICENSE' 2023-11-01T23:30:25,147 writing manifest file 'genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:25,267 Getting requirements to build wheel: finished with status 'done' 2023-11-01T23:30:25,765 Installing backend dependencies: started 2023-11-01T23:30:25,768 Running command pip subprocess to install backend dependencies 2023-11-01T23:30:29,257 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-01T23:30:29,814 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-01T23:30:30,534 Collecting wheel 2023-11-01T23:30:30,553 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB) 2023-11-01T23:30:35,540 Installing collected packages: wheel 2023-11-01T23:30:35,798 Creating /tmp/pip-build-env-n6l1emtu/normal/local/bin 2023-11-01T23:30:35,801 changing mode of /tmp/pip-build-env-n6l1emtu/normal/local/bin/wheel to 755 2023-11-01T23:30:35,814 Successfully installed wheel-0.41.3 2023-11-01T23:30:36,108 [notice] A new release of pip is available: 23.2.1 -> 23.3.1 2023-11-01T23:30:36,109 [notice] To update, run: python3 -m pip install --upgrade pip 2023-11-01T23:30:36,355 Installing backend dependencies: finished with status 'done' 2023-11-01T23:30:36,357 Created temporary directory: /tmp/pip-modern-metadata-w_7dpgot 2023-11-01T23:30:36,368 Preparing metadata (pyproject.toml): started 2023-11-01T23:30:36,369 Running command Preparing metadata (pyproject.toml) 2023-11-01T23:30:37,328 running dist_info 2023-11-01T23:30:37,334 creating /tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info 2023-11-01T23:30:37,340 writing /tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/PKG-INFO 2023-11-01T23:30:37,344 writing dependency_links to /tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/dependency_links.txt 2023-11-01T23:30:37,346 writing entry points to /tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/entry_points.txt 2023-11-01T23:30:37,348 writing requirements to /tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/requires.txt 2023-11-01T23:30:37,349 writing top-level names to /tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/top_level.txt 2023-11-01T23:30:37,351 writing manifest file '/tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:37,397 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-01T23:30:37,401 reading manifest file '/tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:37,403 reading manifest template 'MANIFEST.in' 2023-11-01T23:30:37,404 no previously-included directories found matching 'Docker' 2023-11-01T23:30:37,405 no previously-included directories found matching '.github' 2023-11-01T23:30:37,405 warning: no previously-included files found matching '.gitignore' 2023-11-01T23:30:37,406 warning: no previously-included files found matching '.readthedocs.yml' 2023-11-01T23:30:37,406 warning: no previously-included files found matching 'environment.yml' 2023-11-01T23:30:37,407 adding license file 'LICENSE' 2023-11-01T23:30:37,409 writing manifest file '/tmp/pip-modern-metadata-w_7dpgot/genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:37,410 creating '/tmp/pip-modern-metadata-w_7dpgot/genomedata-1.7.2.dist-info' 2023-11-01T23:30:40,763 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-01T23:30:41,299 Source in /tmp/pip-wheel-ugexd6o7/genomedata_3a10e7acb0d142dea2a2fcc190360b53 has version 1.7.2, which satisfies requirement genomedata==1.7.2 from https://files.pythonhosted.org/packages/a8/19/2bc10574fac2b19ca807c436b5f415f4220348dfb1904cd5b138301066e1/genomedata-1.7.2.tar.gz 2023-11-01T23:30:41,300 Removed genomedata==1.7.2 from https://files.pythonhosted.org/packages/a8/19/2bc10574fac2b19ca807c436b5f415f4220348dfb1904cd5b138301066e1/genomedata-1.7.2.tar.gz from build tracker '/tmp/pip-build-tracker-9lm4gn_z' 2023-11-01T23:30:41,410 Created temporary directory: /tmp/pip-unpack-9bw2z_95 2023-11-01T23:30:41,412 Created temporary directory: /tmp/pip-unpack-2it9hs9x 2023-11-01T23:30:41,431 Building wheels for collected packages: genomedata 2023-11-01T23:30:41,439 Created temporary directory: /tmp/pip-wheel-g7pkz0jo 2023-11-01T23:30:41,440 Destination directory: /tmp/pip-wheel-g7pkz0jo 2023-11-01T23:30:41,444 Building wheel for genomedata (pyproject.toml): started 2023-11-01T23:30:41,446 Running command Building wheel for genomedata (pyproject.toml) 2023-11-01T23:30:42,380 running bdist_wheel 2023-11-01T23:30:42,405 running build 2023-11-01T23:30:42,405 running build_py 2023-11-01T23:30:42,411 creating build 2023-11-01T23:30:42,412 creating build/lib.linux-armv7l-cpython-311 2023-11-01T23:30:42,413 creating build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,415 copying genomedata/_query.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,417 copying genomedata/_load_data.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,420 copying genomedata/_hardmask_parsers.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,422 copying genomedata/__init__.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,425 copying genomedata/_load_seq.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,429 copying genomedata/_open_data.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,431 copying genomedata/_erase_data.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,434 copying genomedata/_close_data.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,436 copying genomedata/_chromosome.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,440 copying genomedata/load_genomedata.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,443 copying genomedata/_report.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,446 copying genomedata/_hdf5.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,451 copying genomedata/_bigwig.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,453 copying genomedata/_histogram.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,456 copying genomedata/_hardmask.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,459 copying genomedata/_info.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,461 copying genomedata/_util.py -> build/lib.linux-armv7l-cpython-311/genomedata 2023-11-01T23:30:42,463 running egg_info 2023-11-01T23:30:42,468 writing genomedata.egg-info/PKG-INFO 2023-11-01T23:30:42,471 writing dependency_links to genomedata.egg-info/dependency_links.txt 2023-11-01T23:30:42,474 writing entry points to genomedata.egg-info/entry_points.txt 2023-11-01T23:30:42,475 writing requirements to genomedata.egg-info/requires.txt 2023-11-01T23:30:42,477 writing top-level names to genomedata.egg-info/top_level.txt 2023-11-01T23:30:42,505 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-01T23:30:42,508 reading manifest file 'genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:42,563 reading manifest template 'MANIFEST.in' 2023-11-01T23:30:42,564 no previously-included directories found matching 'Docker' 2023-11-01T23:30:42,565 no previously-included directories found matching '.github' 2023-11-01T23:30:42,566 warning: no previously-included files found matching '.gitignore' 2023-11-01T23:30:42,566 warning: no previously-included files found matching '.readthedocs.yml' 2023-11-01T23:30:42,567 warning: no previously-included files found matching 'environment.yml' 2023-11-01T23:30:42,568 adding license file 'LICENSE' 2023-11-01T23:30:42,575 writing manifest file 'genomedata.egg-info/SOURCES.txt' 2023-11-01T23:30:42,583 running build_ext 2023-11-01T23:30:42,590 building '_c_load_data' extension 2023-11-01T23:30:42,591 creating build/temp.linux-armv7l-cpython-311 2023-11-01T23:30:42,591 creating build/temp.linux-armv7l-cpython-311/src 2023-11-01T23:30:42,593 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPy_LIMITED_API=0x03090000 -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/python3.11 -c src/_c_load_data.c -o build/temp.linux-armv7l-cpython-311/src/_c_load_data.o 2023-11-01T23:30:43,893 src/_c_load_data.c: In function ‘load_data_from_stdin’: 2023-11-01T23:30:43,894 src/_c_load_data.c:132:13: warning: passing argument 1 of ‘load_data’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-11-01T23:30:43,895 132 | load_data(gdfilename, trackname, (bool)verbose); 2023-11-01T23:30:43,895 | ^~~~~~~~~~ 2023-11-01T23:30:43,896 src/_c_load_data.c:122:22: note: expected ‘char *’ but argument is of type ‘const char *’ 2023-11-01T23:30:43,897 122 | void load_data(char* gdfilename, char* trackname, bool verbose); 2023-11-01T23:30:43,898 | ~~~~~~^~~~~~~~~~ 2023-11-01T23:30:43,899 src/_c_load_data.c:132:25: warning: passing argument 2 of ‘load_data’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-11-01T23:30:43,900 132 | load_data(gdfilename, trackname, (bool)verbose); 2023-11-01T23:30:43,900 | ^~~~~~~~~ 2023-11-01T23:30:43,901 src/_c_load_data.c:122:40: note: expected ‘char *’ but argument is of type ‘const char *’ 2023-11-01T23:30:43,902 122 | void load_data(char* gdfilename, char* trackname, bool verbose); 2023-11-01T23:30:43,903 | ~~~~~~^~~~~~~~~ 2023-11-01T23:30:45,154 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_c_load_data.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -L/usr/lib/arm-linux-gnueabihf -lhdf5 -lm -lz -o build/lib.linux-armv7l-cpython-311/genomedata/_c_load_data.abi3.so 2023-11-01T23:30:45,402 installing to build/bdist.linux-armv7l/wheel 2023-11-01T23:30:45,403 running install 2023-11-01T23:30:45,425 running install_lib 2023-11-01T23:30:45,431 creating build/bdist.linux-armv7l 2023-11-01T23:30:45,432 creating build/bdist.linux-armv7l/wheel 2023-11-01T23:30:45,435 creating build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,437 copying build/lib.linux-armv7l-cpython-311/genomedata/_query.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,440 copying build/lib.linux-armv7l-cpython-311/genomedata/_load_data.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,470 copying build/lib.linux-armv7l-cpython-311/genomedata/_hardmask_parsers.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,494 copying build/lib.linux-armv7l-cpython-311/genomedata/__init__.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,497 copying build/lib.linux-armv7l-cpython-311/genomedata/_load_seq.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,518 copying build/lib.linux-armv7l-cpython-311/genomedata/_open_data.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,521 copying build/lib.linux-armv7l-cpython-311/genomedata/_erase_data.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,534 copying build/lib.linux-armv7l-cpython-311/genomedata/_close_data.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,543 copying build/lib.linux-armv7l-cpython-311/genomedata/_chromosome.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,551 copying build/lib.linux-armv7l-cpython-311/genomedata/load_genomedata.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,592 copying build/lib.linux-armv7l-cpython-311/genomedata/_report.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,612 copying build/lib.linux-armv7l-cpython-311/genomedata/_hdf5.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,618 copying build/lib.linux-armv7l-cpython-311/genomedata/_bigwig.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,633 copying build/lib.linux-armv7l-cpython-311/genomedata/_c_load_data.abi3.so -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,743 copying build/lib.linux-armv7l-cpython-311/genomedata/_histogram.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,779 copying build/lib.linux-armv7l-cpython-311/genomedata/_hardmask.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:45,807 copying build/lib.linux-armv7l-cpython-311/genomedata/_info.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:46,044 copying build/lib.linux-armv7l-cpython-311/genomedata/_util.py -> build/bdist.linux-armv7l/wheel/genomedata 2023-11-01T23:30:46,048 running install_egg_info 2023-11-01T23:30:46,139 Copying genomedata.egg-info to build/bdist.linux-armv7l/wheel/genomedata-1.7.2-py3.11.egg-info 2023-11-01T23:30:46,219 running install_scripts 2023-11-01T23:30:46,428 creating build/bdist.linux-armv7l/wheel/genomedata-1.7.2.dist-info/WHEEL 2023-11-01T23:30:46,451 creating '/tmp/pip-wheel-g7pkz0jo/.tmp-vbscw4cs/genomedata-1.7.2-cp39-abi3-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-01T23:30:46,491 adding 'genomedata/__init__.py' 2023-11-01T23:30:46,495 adding 'genomedata/_bigwig.py' 2023-11-01T23:30:46,543 adding 'genomedata/_c_load_data.abi3.so' 2023-11-01T23:30:46,552 adding 'genomedata/_chromosome.py' 2023-11-01T23:30:46,567 adding 'genomedata/_close_data.py' 2023-11-01T23:30:46,588 adding 'genomedata/_erase_data.py' 2023-11-01T23:30:46,750 adding 'genomedata/_hardmask.py' 2023-11-01T23:30:46,769 adding 'genomedata/_hardmask_parsers.py' 2023-11-01T23:30:46,783 adding 'genomedata/_hdf5.py' 2023-11-01T23:30:46,786 adding 'genomedata/_histogram.py' 2023-11-01T23:30:46,800 adding 'genomedata/_info.py' 2023-11-01T23:30:46,803 adding 'genomedata/_load_data.py' 2023-11-01T23:30:47,055 adding 'genomedata/_load_seq.py' 2023-11-01T23:30:47,348 adding 'genomedata/_open_data.py' 2023-11-01T23:30:47,445 adding 'genomedata/_query.py' 2023-11-01T23:30:47,608 adding 'genomedata/_report.py' 2023-11-01T23:30:47,614 adding 'genomedata/_util.py' 2023-11-01T23:30:47,618 adding 'genomedata/load_genomedata.py' 2023-11-01T23:30:47,629 adding 'genomedata-1.7.2.dist-info/LICENSE' 2023-11-01T23:30:47,631 adding 'genomedata-1.7.2.dist-info/METADATA' 2023-11-01T23:30:47,633 adding 'genomedata-1.7.2.dist-info/WHEEL' 2023-11-01T23:30:47,635 adding 'genomedata-1.7.2.dist-info/entry_points.txt' 2023-11-01T23:30:47,638 adding 'genomedata-1.7.2.dist-info/top_level.txt' 2023-11-01T23:30:47,640 adding 'genomedata-1.7.2.dist-info/RECORD' 2023-11-01T23:30:47,645 removing build/bdist.linux-armv7l/wheel 2023-11-01T23:30:47,807 Building wheel for genomedata (pyproject.toml): finished with status 'done' 2023-11-01T23:30:47,816 Created wheel for genomedata: filename=genomedata-1.7.2-cp39-abi3-linux_armv7l.whl size=91833 sha256=4b503617021068699e1b4b008e497914e161e4219af3fcb7f0a5ad2a802036f6 2023-11-01T23:30:47,818 Stored in directory: /tmp/pip-ephem-wheel-cache-jacvdv7x/wheels/2f/5f/51/9a5319bcb9adff9b7685f0b8c94497c3b2b96a200ae9115b6f 2023-11-01T23:30:47,831 Successfully built genomedata 2023-11-01T23:30:47,838 Removed build tracker: '/tmp/pip-build-tracker-9lm4gn_z'