2023-11-02T20:05:26,767 Created temporary directory: /tmp/pip-build-tracker-js52y237
2023-11-02T20:05:26,768 Initialized build tracking at /tmp/pip-build-tracker-js52y237
2023-11-02T20:05:26,769 Created build tracker: /tmp/pip-build-tracker-js52y237
2023-11-02T20:05:26,769 Entered build tracker: /tmp/pip-build-tracker-js52y237
2023-11-02T20:05:26,770 Created temporary directory: /tmp/pip-wheel-z_4345r5
2023-11-02T20:05:26,773 Created temporary directory: /tmp/pip-ephem-wheel-cache-p2rbs_3l
2023-11-02T20:05:26,795 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-02T20:05:26,799 2 location(s) to search for versions of sidechainnet:
2023-11-02T20:05:26,799 * https://pypi.org/simple/sidechainnet/
2023-11-02T20:05:26,799 * https://www.piwheels.org/simple/sidechainnet/
2023-11-02T20:05:26,799 Fetching project page and analyzing links: https://pypi.org/simple/sidechainnet/
2023-11-02T20:05:26,800 Getting page https://pypi.org/simple/sidechainnet/
2023-11-02T20:05:26,802 Found index url https://pypi.org/simple/
2023-11-02T20:05:27,018 Fetched page https://pypi.org/simple/sidechainnet/ as application/vnd.pypi.simple.v1+json
2023-11-02T20:05:27,023   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/64/fe/6650c46211d024712f91335becee8944073c8eef35065ab9a8f5adad5b12/sidechainnet-0.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,024   Found link https://files.pythonhosted.org/packages/85/79/1a4282047f232dd2cab3aabd6c74627fc31962a0018f046007e403ec8723/sidechainnet-0.4.0.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.4.0
2023-11-02T20:05:27,024   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/5b/72/46af16e841a4fc411a5c683aec2e1045180969a639218999e08e2148ee94/sidechainnet-0.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,025   Found link https://files.pythonhosted.org/packages/83/3b/808241b5dfab556f4b2f732c5755c6f02c9f7c54e89b971f1fae5bf906e0/sidechainnet-0.5.0.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.5.0
2023-11-02T20:05:27,026   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/d2/84/23953d74a98b926aa54aa1750c9c82f173618666248b03ab7bc51f851599/sidechainnet-0.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,027   Found link https://files.pythonhosted.org/packages/fb/5b/efaffe143c4c3b3d78f295922982394032d8365b0e3ddffb80755c0cf050/sidechainnet-0.6.0.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.6.0
2023-11-02T20:05:27,028   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/bf/b8/854fc94d3e7e0f0b0de526180619994003385f2f98654dd5ca5ff9a3cdbd/sidechainnet-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,029   Found link https://files.pythonhosted.org/packages/13/00/b4696adf4bc00e6b949b8409b1ad83ef7b73a6589829789779db829192a8/sidechainnet-0.7.0.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.0
2023-11-02T20:05:27,030   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/df/dd/c11386b590db6d4c95a1e293d9392d1d30205d58f0db0f155b7723a7d758/sidechainnet-0.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,030   Found link https://files.pythonhosted.org/packages/d6/f5/a9e14751d4b4a7b8da0268ff7bcac44812d6b2023fe712f5c3d229da0f34/sidechainnet-0.7.1.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.1
2023-11-02T20:05:27,031   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/53/06/efa83b795ce8028a8637abc8f9e4c9bc2c655ff9806d90962c4ed00da5b6/sidechainnet-0.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,032   Found link https://files.pythonhosted.org/packages/09/f9/d53a77af63836973cb2e592c6f7b1b6664020673667eea57e16f78cc7eb0/sidechainnet-0.7.2.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.2
2023-11-02T20:05:27,033   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/1c/be/e2a170f7dbfa5ce7ece06ae74c1c949f553c3d8c0d55530415bbd1596cc1/sidechainnet-0.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,034   Found link https://files.pythonhosted.org/packages/5c/38/d379f50c0751da9c3b95a6da54ab38cb28298a6bbad8fad3539f44cb3e4e/sidechainnet-0.7.3.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.3
2023-11-02T20:05:27,035   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/b2/8d/e5428e95dba7891782b03ece7b3089d4071e9a8f9f76b60f52af154df239/sidechainnet-0.7.4-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,036   Found link https://files.pythonhosted.org/packages/6d/6c/f9ecde0524a18065c4d166ea32150e40197b536e4148aab05ea2319be595/sidechainnet-0.7.4.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.4
2023-11-02T20:05:27,036   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/d3/a6/f86673831f842e805909889f7c201aab1bb5708fb359e332ac7147769762/sidechainnet-0.7.5-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,037   Found link https://files.pythonhosted.org/packages/b6/4b/7ef0721b6858f9d66fcff53ed07b7a1f76ed09757ea7beb346de04ff4ba3/sidechainnet-0.7.5.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.5
2023-11-02T20:05:27,038   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/28/a9/0525fcdd48f7d40a8ba9613ff6bc7a846c9536d7e0b18774c490087e2358/sidechainnet-0.7.6-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,038   Found link https://files.pythonhosted.org/packages/2b/b9/826c9c3c91e3d755f63c2fd198916db79d41a6a2e252a61f38673f54a373/sidechainnet-0.7.6.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 0.7.6
2023-11-02T20:05:27,039   Skipping link: No binaries permitted for sidechainnet: https://files.pythonhosted.org/packages/02/dc/3708abfae8292e362d6ab59ad883a2075d62ed15c414c13380a2292e8398/sidechainnet-1.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,040   Found link https://files.pythonhosted.org/packages/72/78/e054bd2445586837e6cca9571f06195e9b2fc270dc1541c6792a0515a464/sidechainnet-1.0.1.tar.gz (from https://pypi.org/simple/sidechainnet/) (requires-python:>=3.5), version: 1.0.1
2023-11-02T20:05:27,041 Fetching project page and analyzing links: https://www.piwheels.org/simple/sidechainnet/
2023-11-02T20:05:27,042 Getting page https://www.piwheels.org/simple/sidechainnet/
2023-11-02T20:05:27,043 Found index url https://www.piwheels.org/simple/
2023-11-02T20:05:27,227 Fetched page https://www.piwheels.org/simple/sidechainnet/ as text/html
2023-11-02T20:05:27,231   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.6-py3-none-any.whl#sha256=4af45ac2ff40d911dfae96ff9a073c23949bb8c4f14fbdafcc93b1085c1f8d75 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,232   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.5-py3-none-any.whl#sha256=57f959887c458e8ea992613210e8b4206ca76139ba54b345020c074c6afea4c5 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,233   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.4-py3-none-any.whl#sha256=7f4fe8229358965f5673d2f1f897ae9c39931c333a600603ddd2d08bf3bc8f35 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,233   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.3-py3-none-any.whl#sha256=e3ed4daacbe05398c3cb2fc8dfa486cbd282bf6dbd1a9dedd50e50aa8f0e6c6b (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,234   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.2-py3-none-any.whl#sha256=80a6feb6cc59850a13db8defc3e969ccaa44278d75642c5bafaa7ce4d31cca47 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,234   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.1-py3-none-any.whl#sha256=0d5672dbc7cdcd6c0df56d07a27ffb9a68c1dfbe1ec501cdf8f649ed7a73f10d (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,235   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.7.0-py3-none-any.whl#sha256=991f6747b2ef76f269454e63faf99b0accb13b5c4391e4fb9e45e55eccd710af (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,235   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.6.0-py2.py3-none-any.whl#sha256=1c0a2a9bd2e1f11958e1b2088ac8e5558bf2e6d8931e580468f3e5ab6f5cc5d9 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,236   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.5.0-py2.py3-none-any.whl#sha256=2aa0d033f7b2af98f55786eeabe8fbec0e521d19c0373c9cd8c8b59f865a29e9 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,236   Skipping link: No binaries permitted for sidechainnet: https://www.piwheels.org/simple/sidechainnet/sidechainnet-0.4.0-py2.py3-none-any.whl#sha256=b096b746542c5b2549c975d241612ce997278a8be3f70c015eb1d2bd02617034 (from https://www.piwheels.org/simple/sidechainnet/) (requires-python:>=3.5)
2023-11-02T20:05:27,237 Skipping link: not a file: https://www.piwheels.org/simple/sidechainnet/
2023-11-02T20:05:27,238 Skipping link: not a file: https://pypi.org/simple/sidechainnet/
2023-11-02T20:05:27,258 Given no hashes to check 1 links for project 'sidechainnet': discarding no candidates
2023-11-02T20:05:27,276 Collecting sidechainnet==1.0.1
2023-11-02T20:05:27,278   Created temporary directory: /tmp/pip-unpack-fpv44kxs
2023-11-02T20:05:27,501   Downloading sidechainnet-1.0.1.tar.gz (46.2 MB)
2023-11-02T20:05:45,660   Added sidechainnet==1.0.1 from https://files.pythonhosted.org/packages/72/78/e054bd2445586837e6cca9571f06195e9b2fc270dc1541c6792a0515a464/sidechainnet-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-js52y237'
2023-11-02T20:05:45,662   Running setup.py (path:/tmp/pip-wheel-z_4345r5/sidechainnet_307b5a1178c14f35b3af79fd2942d0cd/setup.py) egg_info for package sidechainnet
2023-11-02T20:05:45,663   Created temporary directory: /tmp/pip-pip-egg-info-y5bte9qg
2023-11-02T20:05:45,664   Preparing metadata (setup.py): started
2023-11-02T20:05:45,665   Running command python setup.py egg_info
2023-11-02T20:05:46,783   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing 'v1.0.1' to '1.0.1'
2023-11-02T20:05:46,783     self.metadata.version = self._normalize_version(
2023-11-02T20:05:46,845   running egg_info
2023-11-02T20:05:46,846   creating /tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info
2023-11-02T20:05:46,871   writing /tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/PKG-INFO
2023-11-02T20:05:46,874   writing dependency_links to /tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/dependency_links.txt
2023-11-02T20:05:46,876   writing requirements to /tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/requires.txt
2023-11-02T20:05:46,877   writing top-level names to /tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/top_level.txt
2023-11-02T20:05:46,879   writing manifest file '/tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/SOURCES.txt'
2023-11-02T20:05:46,933   reading manifest file '/tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/SOURCES.txt'
2023-11-02T20:05:46,934   reading manifest template 'MANIFEST.in'
2023-11-02T20:05:46,942   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-11-02T20:05:46,943   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2023-11-02T20:05:46,943   warning: no previously-included files matching '*.so' found anywhere in distribution
2023-11-02T20:05:46,944   adding license file 'LICENSE'
2023-11-02T20:05:46,948   writing manifest file '/tmp/pip-pip-egg-info-y5bte9qg/sidechainnet.egg-info/SOURCES.txt'
2023-11-02T20:05:47,056   Preparing metadata (setup.py): finished with status 'done'
2023-11-02T20:05:47,061   Source in /tmp/pip-wheel-z_4345r5/sidechainnet_307b5a1178c14f35b3af79fd2942d0cd has version 1.0.1, which satisfies requirement sidechainnet==1.0.1 from https://files.pythonhosted.org/packages/72/78/e054bd2445586837e6cca9571f06195e9b2fc270dc1541c6792a0515a464/sidechainnet-1.0.1.tar.gz
2023-11-02T20:05:47,062   Removed sidechainnet==1.0.1 from https://files.pythonhosted.org/packages/72/78/e054bd2445586837e6cca9571f06195e9b2fc270dc1541c6792a0515a464/sidechainnet-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-js52y237'
2023-11-02T20:05:47,069 Created temporary directory: /tmp/pip-unpack-k4rv3unm
2023-11-02T20:05:47,070 Created temporary directory: /tmp/pip-unpack-gidy_x9k
2023-11-02T20:05:47,086 Building wheels for collected packages: sidechainnet
2023-11-02T20:05:47,090   Created temporary directory: /tmp/pip-wheel-g14v7xbz
2023-11-02T20:05:47,091   Building wheel for sidechainnet (setup.py): started
2023-11-02T20:05:47,092   Destination directory: /tmp/pip-wheel-g14v7xbz
2023-11-02T20:05:47,093   Running command python setup.py bdist_wheel
2023-11-02T20:05:48,089   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:314: InformationOnly: Normalizing 'v1.0.1' to '1.0.1'
2023-11-02T20:05:48,089     self.metadata.version = self._normalize_version(
2023-11-02T20:05:48,145   running bdist_wheel
2023-11-02T20:05:48,240   running build
2023-11-02T20:05:48,240   running build_py
2023-11-02T20:05:48,245   creating build
2023-11-02T20:05:48,246   creating build/lib
2023-11-02T20:05:48,247   creating build/lib/sidechainnet
2023-11-02T20:05:48,248   copying sidechainnet/__init__.py -> build/lib/sidechainnet
2023-11-02T20:05:48,250   copying sidechainnet/_version.py -> build/lib/sidechainnet
2023-11-02T20:05:48,251   copying sidechainnet/create.py -> build/lib/sidechainnet
2023-11-02T20:05:48,255   creating build/lib/sidechainnet/structure
2023-11-02T20:05:48,256   copying sidechainnet/structure/__init__.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,258   copying sidechainnet/structure/fastbuild.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,260   copying sidechainnet/structure/fastbuild_matrices.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,262   copying sidechainnet/structure/BatchedStructureBuilder.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,264   copying sidechainnet/structure/PdbBuilder.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,266   copying sidechainnet/structure/structure.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,268   copying sidechainnet/structure/StructureBuilder.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,271   copying sidechainnet/structure/build_info.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,274   copying sidechainnet/structure/HydrogenBuilder.py -> build/lib/sidechainnet/structure
2023-11-02T20:05:48,277   creating build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,278   copying sidechainnet/dataloaders/__init__.py -> build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,280   copying sidechainnet/dataloaders/collate.py -> build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,282   copying sidechainnet/dataloaders/SimilarLengthBatchSampler.py -> build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,284   copying sidechainnet/dataloaders/ProteinBatch.py -> build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,286   copying sidechainnet/dataloaders/SCNProtein.py -> build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,289   copying sidechainnet/dataloaders/SCNDataset.py -> build/lib/sidechainnet/dataloaders
2023-11-02T20:05:48,292   creating build/lib/sidechainnet/tests
2023-11-02T20:05:48,292   copying sidechainnet/tests/__init__.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,294   copying sidechainnet/tests/test_losses.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,296   copying sidechainnet/tests/test_organize.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,298   copying sidechainnet/tests/test_load.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,299   copying sidechainnet/tests/test_minimize_scn.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,301   copying sidechainnet/tests/test_scnprotein.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,303   copying sidechainnet/tests/test_create.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,304   copying sidechainnet/tests/test_openmm.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,307   copying sidechainnet/tests/test_hydrogens.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,308   copying sidechainnet/tests/test_fastbuild.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,310   copying sidechainnet/tests/test_sidechainnet.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,312   copying sidechainnet/tests/test_structure_builder.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,314   copying sidechainnet/tests/test_build_info.py -> build/lib/sidechainnet/tests
2023-11-02T20:05:48,316   creating build/lib/sidechainnet/utils
2023-11-02T20:05:48,317   copying sidechainnet/utils/__init__.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,318   copying sidechainnet/utils/sequence.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,320   copying sidechainnet/utils/openmm_loss.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,322   copying sidechainnet/utils/manual_adjustment.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,324   copying sidechainnet/utils/parse.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,326   copying sidechainnet/utils/download.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,329   copying sidechainnet/utils/measure.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,331   copying sidechainnet/utils/align.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,334   copying sidechainnet/utils/load.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,336   copying sidechainnet/utils/errors.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,339   copying sidechainnet/utils/organize.py -> build/lib/sidechainnet/utils
2023-11-02T20:05:48,341   creating build/lib/sidechainnet/examples
2023-11-02T20:05:48,342   copying sidechainnet/examples/__init__.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,344   copying sidechainnet/examples/transformer.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,346   copying sidechainnet/examples/alphabet_protein.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,348   copying sidechainnet/examples/models.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,350   copying sidechainnet/examples/optim.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,352   copying sidechainnet/examples/losses.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,355   copying sidechainnet/examples/sidechain_only_models.py -> build/lib/sidechainnet/examples
2023-11-02T20:05:48,356   running egg_info
2023-11-02T20:05:48,412   writing sidechainnet.egg-info/PKG-INFO
2023-11-02T20:05:48,416   writing dependency_links to sidechainnet.egg-info/dependency_links.txt
2023-11-02T20:05:48,418   writing requirements to sidechainnet.egg-info/requires.txt
2023-11-02T20:05:48,419   writing top-level names to sidechainnet.egg-info/top_level.txt
2023-11-02T20:05:48,448   reading manifest file 'sidechainnet.egg-info/SOURCES.txt'
2023-11-02T20:05:48,452   reading manifest template 'MANIFEST.in'
2023-11-02T20:05:48,459   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2023-11-02T20:05:48,459   warning: no previously-included files matching '__pycache__' found anywhere in distribution
2023-11-02T20:05:48,460   warning: no previously-included files matching '*.so' found anywhere in distribution
2023-11-02T20:05:48,461   adding license file 'LICENSE'
2023-11-02T20:05:48,466   writing manifest file 'sidechainnet.egg-info/SOURCES.txt'
2023-11-02T20:05:48,468   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sidechainnet.examples.lightning' is absent from the `packages` configuration.
2023-11-02T20:05:48,469   !!

2023-11-02T20:05:48,470           ********************************************************************************
2023-11-02T20:05:48,470           ############################
2023-11-02T20:05:48,471           # Package would be ignored #
2023-11-02T20:05:48,471           ############################
2023-11-02T20:05:48,472           Python recognizes 'sidechainnet.examples.lightning' as an importable package[^1],
2023-11-02T20:05:48,472           but it is absent from setuptools' `packages` configuration.

2023-11-02T20:05:48,473           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-02T20:05:48,474           package, please make sure that 'sidechainnet.examples.lightning' is explicitly added
2023-11-02T20:05:48,474           to the `packages` configuration field.

2023-11-02T20:05:48,475           Alternatively, you can also rely on setuptools' discovery methods
2023-11-02T20:05:48,476           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-02T20:05:48,477           instead of `find_packages(...)`/`find:`).

2023-11-02T20:05:48,478           You can read more about "package discovery" on setuptools documentation page:

2023-11-02T20:05:48,479           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-02T20:05:48,480           If you don't want 'sidechainnet.examples.lightning' to be distributed and are
2023-11-02T20:05:48,480           already explicitly excluding 'sidechainnet.examples.lightning' via
2023-11-02T20:05:48,481           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-02T20:05:48,481           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-02T20:05:48,482           combination with a more fine grained `package-data` configuration.

2023-11-02T20:05:48,483           You can read more about "package data files" on setuptools documentation page:

2023-11-02T20:05:48,484           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-02T20:05:48,486           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-02T20:05:48,486                 even if it does not contain any `.py` files.
2023-11-02T20:05:48,487                 On the other hand, currently there is no concept of package data
2023-11-02T20:05:48,487                 directory, all directories are treated like packages.
2023-11-02T20:05:48,488           ********************************************************************************

2023-11-02T20:05:48,489   !!
2023-11-02T20:05:48,490     check.warn(importable)
2023-11-02T20:05:48,490   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sidechainnet.research' is absent from the `packages` configuration.
2023-11-02T20:05:48,491   !!

2023-11-02T20:05:48,492           ********************************************************************************
2023-11-02T20:05:48,492           ############################
2023-11-02T20:05:48,493           # Package would be ignored #
2023-11-02T20:05:48,493           ############################
2023-11-02T20:05:48,494           Python recognizes 'sidechainnet.research' as an importable package[^1],
2023-11-02T20:05:48,494           but it is absent from setuptools' `packages` configuration.

2023-11-02T20:05:48,495           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-02T20:05:48,495           package, please make sure that 'sidechainnet.research' is explicitly added
2023-11-02T20:05:48,495           to the `packages` configuration field.

2023-11-02T20:05:48,496           Alternatively, you can also rely on setuptools' discovery methods
2023-11-02T20:05:48,497           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-02T20:05:48,497           instead of `find_packages(...)`/`find:`).

2023-11-02T20:05:48,498           You can read more about "package discovery" on setuptools documentation page:

2023-11-02T20:05:48,499           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-02T20:05:48,500           If you don't want 'sidechainnet.research' to be distributed and are
2023-11-02T20:05:48,501           already explicitly excluding 'sidechainnet.research' via
2023-11-02T20:05:48,501           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-02T20:05:48,501           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-02T20:05:48,502           combination with a more fine grained `package-data` configuration.

2023-11-02T20:05:48,503           You can read more about "package data files" on setuptools documentation page:

2023-11-02T20:05:48,504           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-02T20:05:48,506           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-02T20:05:48,507                 even if it does not contain any `.py` files.
2023-11-02T20:05:48,508                 On the other hand, currently there is no concept of package data
2023-11-02T20:05:48,508                 directory, all directories are treated like packages.
2023-11-02T20:05:48,509           ********************************************************************************

2023-11-02T20:05:48,510   !!
2023-11-02T20:05:48,511     check.warn(importable)
2023-11-02T20:05:48,511   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sidechainnet.research.build_parameter_optim' is absent from the `packages` configuration.
2023-11-02T20:05:48,512   !!

2023-11-02T20:05:48,513           ********************************************************************************
2023-11-02T20:05:48,514           ############################
2023-11-02T20:05:48,514           # Package would be ignored #
2023-11-02T20:05:48,515           ############################
2023-11-02T20:05:48,515           Python recognizes 'sidechainnet.research.build_parameter_optim' as an importable package[^1],
2023-11-02T20:05:48,516           but it is absent from setuptools' `packages` configuration.

2023-11-02T20:05:48,517           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-02T20:05:48,518           package, please make sure that 'sidechainnet.research.build_parameter_optim' is explicitly added
2023-11-02T20:05:48,518           to the `packages` configuration field.

2023-11-02T20:05:48,520           Alternatively, you can also rely on setuptools' discovery methods
2023-11-02T20:05:48,520           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-02T20:05:48,521           instead of `find_packages(...)`/`find:`).

2023-11-02T20:05:48,522           You can read more about "package discovery" on setuptools documentation page:

2023-11-02T20:05:48,524           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-02T20:05:48,525           If you don't want 'sidechainnet.research.build_parameter_optim' to be distributed and are
2023-11-02T20:05:48,525           already explicitly excluding 'sidechainnet.research.build_parameter_optim' via
2023-11-02T20:05:48,525           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-02T20:05:48,526           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-02T20:05:48,526           combination with a more fine grained `package-data` configuration.

2023-11-02T20:05:48,527           You can read more about "package data files" on setuptools documentation page:

2023-11-02T20:05:48,528           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-02T20:05:48,529           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-02T20:05:48,530                 even if it does not contain any `.py` files.
2023-11-02T20:05:48,530                 On the other hand, currently there is no concept of package data
2023-11-02T20:05:48,531                 directory, all directories are treated like packages.
2023-11-02T20:05:48,531           ********************************************************************************

2023-11-02T20:05:48,532   !!
2023-11-02T20:05:48,533     check.warn(importable)
2023-11-02T20:05:48,533   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sidechainnet.research.openfold' is absent from the `packages` configuration.
2023-11-02T20:05:48,534   !!

2023-11-02T20:05:48,535           ********************************************************************************
2023-11-02T20:05:48,535           ############################
2023-11-02T20:05:48,536           # Package would be ignored #
2023-11-02T20:05:48,536           ############################
2023-11-02T20:05:48,537           Python recognizes 'sidechainnet.research.openfold' as an importable package[^1],
2023-11-02T20:05:48,538           but it is absent from setuptools' `packages` configuration.

2023-11-02T20:05:48,539           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-02T20:05:48,540           package, please make sure that 'sidechainnet.research.openfold' is explicitly added
2023-11-02T20:05:48,540           to the `packages` configuration field.

2023-11-02T20:05:48,542           Alternatively, you can also rely on setuptools' discovery methods
2023-11-02T20:05:48,542           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-02T20:05:48,543           instead of `find_packages(...)`/`find:`).

2023-11-02T20:05:48,544           You can read more about "package discovery" on setuptools documentation page:

2023-11-02T20:05:48,545           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-02T20:05:48,546           If you don't want 'sidechainnet.research.openfold' to be distributed and are
2023-11-02T20:05:48,547           already explicitly excluding 'sidechainnet.research.openfold' via
2023-11-02T20:05:48,547           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-02T20:05:48,548           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-02T20:05:48,548           combination with a more fine grained `package-data` configuration.

2023-11-02T20:05:48,549           You can read more about "package data files" on setuptools documentation page:

2023-11-02T20:05:48,551           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-02T20:05:48,552           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-02T20:05:48,553                 even if it does not contain any `.py` files.
2023-11-02T20:05:48,554                 On the other hand, currently there is no concept of package data
2023-11-02T20:05:48,554                 directory, all directories are treated like packages.
2023-11-02T20:05:48,555           ********************************************************************************

2023-11-02T20:05:48,556   !!
2023-11-02T20:05:48,556     check.warn(importable)
2023-11-02T20:05:48,557   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'sidechainnet.resources' is absent from the `packages` configuration.
2023-11-02T20:05:48,557   !!

2023-11-02T20:05:48,558           ********************************************************************************
2023-11-02T20:05:48,559           ############################
2023-11-02T20:05:48,560           # Package would be ignored #
2023-11-02T20:05:48,562           ############################
2023-11-02T20:05:48,563           Python recognizes 'sidechainnet.resources' as an importable package[^1],
2023-11-02T20:05:48,582           but it is absent from setuptools' `packages` configuration.

2023-11-02T20:05:48,620           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-02T20:05:48,642           package, please make sure that 'sidechainnet.resources' is explicitly added
2023-11-02T20:05:48,668           to the `packages` configuration field.

2023-11-02T20:05:48,681           Alternatively, you can also rely on setuptools' discovery methods
2023-11-02T20:05:48,681           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-02T20:05:48,681           instead of `find_packages(...)`/`find:`).

2023-11-02T20:05:48,682           You can read more about "package discovery" on setuptools documentation page:

2023-11-02T20:05:48,683           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-02T20:05:48,684           If you don't want 'sidechainnet.resources' to be distributed and are
2023-11-02T20:05:48,685           already explicitly excluding 'sidechainnet.resources' via
2023-11-02T20:05:48,685           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-02T20:05:48,686           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-02T20:05:48,686           combination with a more fine grained `package-data` configuration.

2023-11-02T20:05:48,687           You can read more about "package data files" on setuptools documentation page:

2023-11-02T20:05:48,688           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-02T20:05:48,690           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-02T20:05:48,691                 even if it does not contain any `.py` files.
2023-11-02T20:05:48,691                 On the other hand, currently there is no concept of package data
2023-11-02T20:05:48,692                 directory, all directories are treated like packages.
2023-11-02T20:05:48,693           ********************************************************************************

2023-11-02T20:05:48,694   !!
2023-11-02T20:05:48,694     check.warn(importable)
2023-11-02T20:05:48,695   creating build/lib/sidechainnet/research
2023-11-02T20:05:48,695   copying sidechainnet/research/log.py -> build/lib/sidechainnet/research
2023-11-02T20:05:48,696   copying sidechainnet/research/minimize_scn.py -> build/lib/sidechainnet/research
2023-11-02T20:05:48,696   copying sidechainnet/research/minimizer.py -> build/lib/sidechainnet/research
2023-11-02T20:05:48,697   creating build/lib/sidechainnet/research/build_parameter_optim
2023-11-02T20:05:48,698   copying sidechainnet/research/build_parameter_optim/build_params.pkl -> build/lib/sidechainnet/research/build_parameter_optim
2023-11-02T20:05:48,698   copying sidechainnet/research/build_parameter_optim/optimize_build_params.py -> build/lib/sidechainnet/research/build_parameter_optim
2023-11-02T20:05:48,699   creating build/lib/sidechainnet/research/openfold
2023-11-02T20:05:48,699   copying sidechainnet/research/openfold/openfold_loss.py -> build/lib/sidechainnet/research/openfold
2023-11-02T20:05:48,700   creating build/lib/sidechainnet/resources
2023-11-02T20:05:48,701   copying sidechainnet/resources/all_proteinnet_ids.csv -> build/lib/sidechainnet/resources
2023-11-02T20:05:48,701   copying sidechainnet/resources/amino12.lib -> build/lib/sidechainnet/resources
2023-11-02T20:05:48,701   copying sidechainnet/resources/astral_data.txt -> build/lib/sidechainnet/resources
2023-11-02T20:05:50,355   copying sidechainnet/resources/build_params.pkl -> build/lib/sidechainnet/resources
2023-11-02T20:05:50,359   copying sidechainnet/resources/frcmod.ff14SB -> build/lib/sidechainnet/resources
2023-11-02T20:05:50,361   copying sidechainnet/resources/full_protein_dssp_annotations.json -> build/lib/sidechainnet/resources
2023-11-02T20:05:52,631   copying sidechainnet/resources/parm10.dat -> build/lib/sidechainnet/resources
2023-11-02T20:05:52,634   copying sidechainnet/resources/single_domain_dssp_annotations.json -> build/lib/sidechainnet/resources
2023-11-02T20:05:55,142   creating build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,143   copying sidechainnet/examples/lightning/AnglePredictionHelper.py -> build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,146   copying sidechainnet/examples/lightning/LitSCNDataModule.py -> build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,149   copying sidechainnet/examples/lightning/LitSidechainDemo.py -> build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,152   copying sidechainnet/examples/lightning/LitSidechainTransformer.py -> build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,155   copying sidechainnet/examples/lightning/LoggingHelper.py -> build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,158   copying sidechainnet/examples/lightning/MyPLCallbacks.py -> build/lib/sidechainnet/examples/lightning
2023-11-02T20:05:55,164   UPDATING build/lib/sidechainnet/_version.py
2023-11-02T20:05:55,165   set build/lib/sidechainnet/_version.py to 'v1.0.1'
2023-11-02T20:05:55,200   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-11-02T20:05:55,207   !!

2023-11-02T20:05:55,232           ********************************************************************************
2023-11-02T20:05:55,233           Please avoid running ``setup.py`` directly.
2023-11-02T20:05:55,234           Instead, use pypa/build, pypa/installer or other
2023-11-02T20:05:55,235           standards-based tools.

2023-11-02T20:05:55,236           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-11-02T20:05:55,237           ********************************************************************************

2023-11-02T20:05:55,238   !!
2023-11-02T20:05:55,239     self.initialize_options()
2023-11-02T20:05:55,262   installing to build/bdist.linux-armv7l/wheel
2023-11-02T20:05:55,262   running install
2023-11-02T20:05:55,287   running install_lib
2023-11-02T20:05:55,352   creating build/bdist.linux-armv7l
2023-11-02T20:05:55,353   creating build/bdist.linux-armv7l/wheel
2023-11-02T20:05:55,355   creating build/bdist.linux-armv7l/wheel/sidechainnet
2023-11-02T20:05:55,363   copying build/lib/sidechainnet/__init__.py -> build/bdist.linux-armv7l/wheel/sidechainnet
2023-11-02T20:05:55,372   creating build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,374   copying build/lib/sidechainnet/structure/__init__.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,376   copying build/lib/sidechainnet/structure/fastbuild.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,384   copying build/lib/sidechainnet/structure/fastbuild_matrices.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,388   copying build/lib/sidechainnet/structure/BatchedStructureBuilder.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,394   copying build/lib/sidechainnet/structure/PdbBuilder.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,400   copying build/lib/sidechainnet/structure/structure.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,404   copying build/lib/sidechainnet/structure/StructureBuilder.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,414   copying build/lib/sidechainnet/structure/build_info.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,420   copying build/lib/sidechainnet/structure/HydrogenBuilder.py -> build/bdist.linux-armv7l/wheel/sidechainnet/structure
2023-11-02T20:05:55,425   creating build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,426   copying build/lib/sidechainnet/dataloaders/__init__.py -> build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,428   copying build/lib/sidechainnet/dataloaders/collate.py -> build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,431   copying build/lib/sidechainnet/dataloaders/SimilarLengthBatchSampler.py -> build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,436   copying build/lib/sidechainnet/dataloaders/ProteinBatch.py -> build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,439   copying build/lib/sidechainnet/dataloaders/SCNProtein.py -> build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,443   copying build/lib/sidechainnet/dataloaders/SCNDataset.py -> build/bdist.linux-armv7l/wheel/sidechainnet/dataloaders
2023-11-02T20:05:55,446   copying build/lib/sidechainnet/_version.py -> build/bdist.linux-armv7l/wheel/sidechainnet
2023-11-02T20:05:55,456   creating build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,457   copying build/lib/sidechainnet/tests/__init__.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,460   copying build/lib/sidechainnet/tests/test_losses.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,466   copying build/lib/sidechainnet/tests/test_organize.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,468   copying build/lib/sidechainnet/tests/test_load.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,473   copying build/lib/sidechainnet/tests/test_minimize_scn.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,476   copying build/lib/sidechainnet/tests/test_scnprotein.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,478   copying build/lib/sidechainnet/tests/test_create.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,480   copying build/lib/sidechainnet/tests/test_openmm.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,483   copying build/lib/sidechainnet/tests/test_hydrogens.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,486   copying build/lib/sidechainnet/tests/test_fastbuild.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,490   copying build/lib/sidechainnet/tests/test_sidechainnet.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,492   copying build/lib/sidechainnet/tests/test_structure_builder.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,495   copying build/lib/sidechainnet/tests/test_build_info.py -> build/bdist.linux-armv7l/wheel/sidechainnet/tests
2023-11-02T20:05:55,508   creating build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:05:55,510   copying build/lib/sidechainnet/resources/parm10.dat -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:05:55,515   copying build/lib/sidechainnet/resources/build_params.pkl -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:05:55,524   copying build/lib/sidechainnet/resources/frcmod.ff14SB -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:05:55,531   copying build/lib/sidechainnet/resources/full_protein_dssp_annotations.json -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:06:01,750   copying build/lib/sidechainnet/resources/single_domain_dssp_annotations.json -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:06:02,413   copying build/lib/sidechainnet/resources/amino12.lib -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:06:02,417   copying build/lib/sidechainnet/resources/astral_data.txt -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:06:04,141   copying build/lib/sidechainnet/resources/all_proteinnet_ids.csv -> build/bdist.linux-armv7l/wheel/sidechainnet/resources
2023-11-02T20:06:04,833   creating build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,834   copying build/lib/sidechainnet/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,836   copying build/lib/sidechainnet/utils/sequence.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,840   copying build/lib/sidechainnet/utils/openmm_loss.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,844   copying build/lib/sidechainnet/utils/manual_adjustment.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,846   copying build/lib/sidechainnet/utils/parse.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,850   copying build/lib/sidechainnet/utils/download.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,853   copying build/lib/sidechainnet/utils/measure.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,856   copying build/lib/sidechainnet/utils/align.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,859   copying build/lib/sidechainnet/utils/load.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,863   copying build/lib/sidechainnet/utils/errors.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,866   copying build/lib/sidechainnet/utils/organize.py -> build/bdist.linux-armv7l/wheel/sidechainnet/utils
2023-11-02T20:06:04,870   creating build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,872   copying build/lib/sidechainnet/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,875   copying build/lib/sidechainnet/examples/transformer.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,878   copying build/lib/sidechainnet/examples/alphabet_protein.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,882   copying build/lib/sidechainnet/examples/models.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,885   copying build/lib/sidechainnet/examples/optim.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,888   creating build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,890   copying build/lib/sidechainnet/examples/lightning/LitSidechainDemo.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,894   copying build/lib/sidechainnet/examples/lightning/MyPLCallbacks.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,897   copying build/lib/sidechainnet/examples/lightning/LitSCNDataModule.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,900   copying build/lib/sidechainnet/examples/lightning/AnglePredictionHelper.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,904   copying build/lib/sidechainnet/examples/lightning/LoggingHelper.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,907   copying build/lib/sidechainnet/examples/lightning/LitSidechainTransformer.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples/lightning
2023-11-02T20:06:04,910   copying build/lib/sidechainnet/examples/losses.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,913   copying build/lib/sidechainnet/examples/sidechain_only_models.py -> build/bdist.linux-armv7l/wheel/sidechainnet/examples
2023-11-02T20:06:04,917   creating build/bdist.linux-armv7l/wheel/sidechainnet/research
2023-11-02T20:06:04,919   creating build/bdist.linux-armv7l/wheel/sidechainnet/research/build_parameter_optim
2023-11-02T20:06:04,920   copying build/lib/sidechainnet/research/build_parameter_optim/build_params.pkl -> build/bdist.linux-armv7l/wheel/sidechainnet/research/build_parameter_optim
2023-11-02T20:06:04,925   copying build/lib/sidechainnet/research/build_parameter_optim/optimize_build_params.py -> build/bdist.linux-armv7l/wheel/sidechainnet/research/build_parameter_optim
2023-11-02T20:06:04,928   copying build/lib/sidechainnet/research/minimizer.py -> build/bdist.linux-armv7l/wheel/sidechainnet/research
2023-11-02T20:06:04,931   copying build/lib/sidechainnet/research/log.py -> build/bdist.linux-armv7l/wheel/sidechainnet/research
2023-11-02T20:06:04,934   copying build/lib/sidechainnet/research/minimize_scn.py -> build/bdist.linux-armv7l/wheel/sidechainnet/research
2023-11-02T20:06:04,937   creating build/bdist.linux-armv7l/wheel/sidechainnet/research/openfold
2023-11-02T20:06:04,939   copying build/lib/sidechainnet/research/openfold/openfold_loss.py -> build/bdist.linux-armv7l/wheel/sidechainnet/research/openfold
2023-11-02T20:06:04,942   copying build/lib/sidechainnet/create.py -> build/bdist.linux-armv7l/wheel/sidechainnet
2023-11-02T20:06:04,946   running install_egg_info
2023-11-02T20:06:04,981   Copying sidechainnet.egg-info to build/bdist.linux-armv7l/wheel/sidechainnet-1.0.1-py3.11.egg-info
2023-11-02T20:06:04,996   running install_scripts
2023-11-02T20:06:05,018   creating build/bdist.linux-armv7l/wheel/sidechainnet-1.0.1.dist-info/WHEEL
2023-11-02T20:06:05,022   creating '/tmp/pip-wheel-g14v7xbz/sidechainnet-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-02T20:06:05,025   adding 'sidechainnet/__init__.py'
2023-11-02T20:06:05,027   adding 'sidechainnet/_version.py'
2023-11-02T20:06:05,031   adding 'sidechainnet/create.py'
2023-11-02T20:06:05,034   adding 'sidechainnet/dataloaders/ProteinBatch.py'
2023-11-02T20:06:05,037   adding 'sidechainnet/dataloaders/SCNDataset.py'
2023-11-02T20:06:05,044   adding 'sidechainnet/dataloaders/SCNProtein.py'
2023-11-02T20:06:05,047   adding 'sidechainnet/dataloaders/SimilarLengthBatchSampler.py'
2023-11-02T20:06:05,049   adding 'sidechainnet/dataloaders/__init__.py'
2023-11-02T20:06:05,051   adding 'sidechainnet/dataloaders/collate.py'
2023-11-02T20:06:05,054   adding 'sidechainnet/examples/__init__.py'
2023-11-02T20:06:05,056   adding 'sidechainnet/examples/alphabet_protein.py'
2023-11-02T20:06:05,059   adding 'sidechainnet/examples/losses.py'
2023-11-02T20:06:05,061   adding 'sidechainnet/examples/models.py'
2023-11-02T20:06:05,063   adding 'sidechainnet/examples/optim.py'
2023-11-02T20:06:05,065   adding 'sidechainnet/examples/sidechain_only_models.py'
2023-11-02T20:06:05,068   adding 'sidechainnet/examples/transformer.py'
2023-11-02T20:06:05,071   adding 'sidechainnet/examples/lightning/AnglePredictionHelper.py'
2023-11-02T20:06:05,073   adding 'sidechainnet/examples/lightning/LitSCNDataModule.py'
2023-11-02T20:06:05,076   adding 'sidechainnet/examples/lightning/LitSidechainDemo.py'
2023-11-02T20:06:05,078   adding 'sidechainnet/examples/lightning/LitSidechainTransformer.py'
2023-11-02T20:06:05,081   adding 'sidechainnet/examples/lightning/LoggingHelper.py'
2023-11-02T20:06:05,083   adding 'sidechainnet/examples/lightning/MyPLCallbacks.py'
2023-11-02T20:06:05,087   adding 'sidechainnet/research/log.py'
2023-11-02T20:06:05,089   adding 'sidechainnet/research/minimize_scn.py'
2023-11-02T20:06:05,092   adding 'sidechainnet/research/minimizer.py'
2023-11-02T20:06:05,097   adding 'sidechainnet/research/build_parameter_optim/build_params.pkl'
2023-11-02T20:06:05,100   adding 'sidechainnet/research/build_parameter_optim/optimize_build_params.py'
2023-11-02T20:06:05,103   adding 'sidechainnet/research/openfold/openfold_loss.py'
2023-11-02T20:06:05,644   adding 'sidechainnet/resources/all_proteinnet_ids.csv'
2023-11-02T20:06:05,747   adding 'sidechainnet/resources/amino12.lib'
2023-11-02T20:06:17,387   adding 'sidechainnet/resources/astral_data.txt'
2023-11-02T20:06:17,932   adding 'sidechainnet/resources/build_params.pkl'
2023-11-02T20:06:17,935   adding 'sidechainnet/resources/frcmod.ff14SB'
2023-11-02T20:06:31,663   adding 'sidechainnet/resources/full_protein_dssp_annotations.json'
2023-11-02T20:06:32,390   adding 'sidechainnet/resources/parm10.dat'
2023-11-02T20:06:34,731   adding 'sidechainnet/resources/single_domain_dssp_annotations.json'
2023-11-02T20:06:35,029   adding 'sidechainnet/structure/BatchedStructureBuilder.py'
2023-11-02T20:06:35,033   adding 'sidechainnet/structure/HydrogenBuilder.py'
2023-11-02T20:06:35,035   adding 'sidechainnet/structure/PdbBuilder.py'
2023-11-02T20:06:35,038   adding 'sidechainnet/structure/StructureBuilder.py'
2023-11-02T20:06:35,040   adding 'sidechainnet/structure/__init__.py'
2023-11-02T20:06:35,044   adding 'sidechainnet/structure/build_info.py'
2023-11-02T20:06:35,048   adding 'sidechainnet/structure/fastbuild.py'
2023-11-02T20:06:35,050   adding 'sidechainnet/structure/fastbuild_matrices.py'
2023-11-02T20:06:35,052   adding 'sidechainnet/structure/structure.py'
2023-11-02T20:06:35,054   adding 'sidechainnet/tests/__init__.py'
2023-11-02T20:06:35,055   adding 'sidechainnet/tests/test_build_info.py'
2023-11-02T20:06:35,056   adding 'sidechainnet/tests/test_create.py'
2023-11-02T20:06:35,058   adding 'sidechainnet/tests/test_fastbuild.py'
2023-11-02T20:06:35,059   adding 'sidechainnet/tests/test_hydrogens.py'
2023-11-02T20:06:35,060   adding 'sidechainnet/tests/test_load.py'
2023-11-02T20:06:35,061   adding 'sidechainnet/tests/test_losses.py'
2023-11-02T20:06:35,062   adding 'sidechainnet/tests/test_minimize_scn.py'
2023-11-02T20:06:35,064   adding 'sidechainnet/tests/test_openmm.py'
2023-11-02T20:06:35,065   adding 'sidechainnet/tests/test_organize.py'
2023-11-02T20:06:35,067   adding 'sidechainnet/tests/test_scnprotein.py'
2023-11-02T20:06:35,068   adding 'sidechainnet/tests/test_sidechainnet.py'
2023-11-02T20:06:35,069   adding 'sidechainnet/tests/test_structure_builder.py'
2023-11-02T20:06:35,071   adding 'sidechainnet/utils/__init__.py'
2023-11-02T20:06:35,073   adding 'sidechainnet/utils/align.py'
2023-11-02T20:06:35,076   adding 'sidechainnet/utils/download.py'
2023-11-02T20:06:35,078   adding 'sidechainnet/utils/errors.py'
2023-11-02T20:06:35,081   adding 'sidechainnet/utils/load.py'
2023-11-02T20:06:35,083   adding 'sidechainnet/utils/manual_adjustment.py'
2023-11-02T20:06:35,085   adding 'sidechainnet/utils/measure.py'
2023-11-02T20:06:35,087   adding 'sidechainnet/utils/openmm_loss.py'
2023-11-02T20:06:35,089   adding 'sidechainnet/utils/organize.py'
2023-11-02T20:06:35,091   adding 'sidechainnet/utils/parse.py'
2023-11-02T20:06:35,093   adding 'sidechainnet/utils/sequence.py'
2023-11-02T20:06:35,095   adding 'sidechainnet-1.0.1.dist-info/LICENSE'
2023-11-02T20:06:35,097   adding 'sidechainnet-1.0.1.dist-info/METADATA'
2023-11-02T20:06:35,098   adding 'sidechainnet-1.0.1.dist-info/WHEEL'
2023-11-02T20:06:35,099   adding 'sidechainnet-1.0.1.dist-info/top_level.txt'
2023-11-02T20:06:35,101   adding 'sidechainnet-1.0.1.dist-info/RECORD'
2023-11-02T20:06:35,631   removing build/bdist.linux-armv7l/wheel
2023-11-02T20:06:35,847   Building wheel for sidechainnet (setup.py): finished with status 'done'
2023-11-02T20:06:36,407   Created wheel for sidechainnet: filename=sidechainnet-1.0.1-py3-none-any.whl size=47675190 sha256=022d432f21daec1ae564e56c936dc86ccd1f08d2dab8094ed57e8ba5e1ee338c
2023-11-02T20:06:36,408   Stored in directory: /tmp/pip-ephem-wheel-cache-p2rbs_3l/wheels/62/e5/f9/782a01aa48fcba331039bc715bd1ebf7f9592fafacafda27c7
2023-11-02T20:06:36,436 Successfully built sidechainnet
2023-11-02T20:06:37,501 Removed build tracker: '/tmp/pip-build-tracker-js52y237'