2023-11-03T14:45:21,461 Created temporary directory: /tmp/pip-build-tracker-rv8ysca1
2023-11-03T14:45:21,462 Initialized build tracking at /tmp/pip-build-tracker-rv8ysca1
2023-11-03T14:45:21,462 Created build tracker: /tmp/pip-build-tracker-rv8ysca1
2023-11-03T14:45:21,463 Entered build tracker: /tmp/pip-build-tracker-rv8ysca1
2023-11-03T14:45:21,464 Created temporary directory: /tmp/pip-wheel-uunykyrf
2023-11-03T14:45:21,467 Created temporary directory: /tmp/pip-ephem-wheel-cache-lcumn58n
2023-11-03T14:45:21,489 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-03T14:45:21,493 2 location(s) to search for versions of moleculekit:
2023-11-03T14:45:21,493 * https://pypi.org/simple/moleculekit/
2023-11-03T14:45:21,493 * https://www.piwheels.org/simple/moleculekit/
2023-11-03T14:45:21,493 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-11-03T14:45:21,494 Getting page https://pypi.org/simple/moleculekit/
2023-11-03T14:45:21,496 Found index url https://pypi.org/simple/
2023-11-03T14:45:21,738 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-11-03T14:45:21,776   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,777   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-11-03T14:45:21,777   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,778   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-11-03T14:45:21,778   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,779   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-11-03T14:45:21,780   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,781   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-11-03T14:45:21,782   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,782   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-11-03T14:45:21,783   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,784   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-11-03T14:45:21,784   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,785   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-11-03T14:45:21,786   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,786   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-11-03T14:45:21,787   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,787   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-11-03T14:45:21,788   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,788   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-11-03T14:45:21,789   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,790   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-11-03T14:45:21,790   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,791   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-11-03T14:45:21,792   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,793   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-11-03T14:45:21,793   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,794   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-11-03T14:45:21,794   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,795   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-11-03T14:45:21,796   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,797   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-11-03T14:45:21,797   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,798   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-11-03T14:45:21,798   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,799   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-11-03T14:45:21,799   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,800   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-11-03T14:45:21,801   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,802   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-11-03T14:45:21,802   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,803   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-11-03T14:45:21,804   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,804   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-11-03T14:45:21,805   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,806   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-11-03T14:45:21,806   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,807   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-11-03T14:45:21,808   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,808   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-11-03T14:45:21,809   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,809   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-11-03T14:45:21,810   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,810   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-11-03T14:45:21,811   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,812   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-11-03T14:45:21,812   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,813   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-11-03T14:45:21,814   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,814   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-11-03T14:45:21,815   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,816   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-11-03T14:45:21,817   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,817   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-11-03T14:45:21,818   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T14:45:21,819   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-11-03T14:45:21,916   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2023-11-03T14:45:21,917   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-11-03T14:45:21,918   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-11-03T14:45:21,919   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-11-03T14:45:21,920   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-11-03T14:45:21,921   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-11-03T14:45:21,922   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-11-03T14:45:21,923   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-11-03T14:45:21,924   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-11-03T14:45:21,925   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-11-03T14:45:21,926   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-11-03T14:45:21,927   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-11-03T14:45:21,928   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-11-03T14:45:21,929   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-11-03T14:45:21,929   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-11-03T14:45:21,930   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-11-03T14:45:21,931   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-11-03T14:45:21,932   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-11-03T14:45:21,933   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-11-03T14:45:21,934   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-11-03T14:45:21,935   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-11-03T14:45:21,936   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-11-03T14:45:21,937 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-11-03T14:45:21,937 Getting page https://www.piwheels.org/simple/moleculekit/
2023-11-03T14:45:21,939 Found index url https://www.piwheels.org/simple/
2023-11-03T14:45:22,127 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-11-03T14:45:22,206   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.7.17-cp39-cp39-linux_armv7l.whl#sha256=885ac80555f3166751d89984b0b94dbb3c5fa2e22658ba0bf20b5582384dffb8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-11-03T14:45:22,263   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,266   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,268   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,269   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,269   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,270   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,271   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,271   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,272   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,272   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,273   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,273   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,274   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,274   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,275   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,275   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,276   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,276   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,277   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,278   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,278   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,279   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,280   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,280   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,281   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,281   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,282   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,282   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,283   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,284   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,284   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,285   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,286   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,286   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,287   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,288   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,289   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,293   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,294   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,295   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,296   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,320   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,321   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,322   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,322   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,323   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,323   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,324   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,325   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,326   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,327   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,328   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,329   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,330   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,331   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,332   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,333   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,334   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,335   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,336   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T14:45:22,337   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,338   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,338   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,339   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,339   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,340   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,341   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,341   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,342   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,342   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,342   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,343   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,344   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,344   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,345   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,345   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,346   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T14:45:22,346 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-11-03T14:45:22,347 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-11-03T14:45:22,388 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-11-03T14:45:22,409 Collecting moleculekit==1.8.6
2023-11-03T14:45:22,411   Created temporary directory: /tmp/pip-unpack-r8pkscq0
2023-11-03T14:45:22,639   Downloading moleculekit-1.8.6.tar.gz (6.2 MB)
2023-11-03T14:45:25,153   Added moleculekit==1.8.6 from https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz to build tracker '/tmp/pip-build-tracker-rv8ysca1'
2023-11-03T14:45:25,161   Created temporary directory: /tmp/pip-build-env-fa7h6kgn
2023-11-03T14:45:25,166   Installing build dependencies: started
2023-11-03T14:45:25,167   Running command pip subprocess to install build dependencies
2023-11-03T14:45:26,314   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-11-03T14:45:26,839   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-03T14:45:28,266   Collecting setuptools
2023-11-03T14:45:28,280     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-11-03T14:45:28,854     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-11-03T14:45:28,859     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-11-03T14:45:28,862     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-11-03T14:45:28,866     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-11-03T14:45:28,870     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-11-03T14:45:29,137   Collecting numpy>=1.18.5
2023-11-03T14:45:29,152     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.1-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-11-03T14:45:30,823   Collecting Cython>=0.29.21
2023-11-03T14:45:30,840     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.5-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-11-03T14:45:31,268   Collecting toml
2023-11-03T14:45:31,283     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-11-03T14:45:31,456   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-11-03T14:45:31,476     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-11-03T14:45:34,262   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-11-03T14:45:34,293     Creating /tmp/pip-build-env-fa7h6kgn/overlay/local/bin
2023-11-03T14:45:34,295     changing mode of /tmp/pip-build-env-fa7h6kgn/overlay/local/bin/versioneer to 755
2023-11-03T14:45:44,547     changing mode of /tmp/pip-build-env-fa7h6kgn/overlay/local/bin/f2py to 755
2023-11-03T14:45:48,957     changing mode of /tmp/pip-build-env-fa7h6kgn/overlay/local/bin/cygdb to 755
2023-11-03T14:45:48,959     changing mode of /tmp/pip-build-env-fa7h6kgn/overlay/local/bin/cython to 755
2023-11-03T14:45:48,962     changing mode of /tmp/pip-build-env-fa7h6kgn/overlay/local/bin/cythonize to 755
2023-11-03T14:45:49,006   Successfully installed Cython-3.0.5 numpy-1.26.1 setuptools-68.2.2 toml-0.10.2 versioneer-0.28
2023-11-03T14:45:49,644   Installing build dependencies: finished with status 'done'
2023-11-03T14:45:49,647   Getting requirements to build wheel: started
2023-11-03T14:45:49,648   Running command Getting requirements to build wheel
2023-11-03T14:46:24,956   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,956   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,957   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,957   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,958   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,958   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,959   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,959   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,960   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,960   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-11-03T14:46:24,961   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T14:46:24,961   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
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2023-11-03T14:46:25,230   running egg_info
2023-11-03T14:46:25,237   writing moleculekit.egg-info/PKG-INFO
2023-11-03T14:46:25,241   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-11-03T14:46:25,243   writing requirements to moleculekit.egg-info/requires.txt
2023-11-03T14:46:25,245   writing top-level names to moleculekit.egg-info/top_level.txt
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2023-11-03T14:46:25,284   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-03T14:46:25,287   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:25,287   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-11-03T14:46:25,290   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-03T14:46:25,291   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:25,291   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:25,292   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:25,293   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:25,317   reading manifest template 'MANIFEST.in'
2023-11-03T14:46:25,523   no previously-included directories found matching 'moleculekit/test-data'
2023-11-03T14:46:25,524   no previously-included directories found matching 'moleculekit/tests'
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2023-11-03T14:46:25,525   adding license file 'LICENSE'
2023-11-03T14:46:25,539   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:26,838   Getting requirements to build wheel: finished with status 'done'
2023-11-03T14:46:26,852   Installing backend dependencies: started
2023-11-03T14:46:26,853   Running command pip subprocess to install backend dependencies
2023-11-03T14:46:28,082   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-11-03T14:46:28,645   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-03T14:46:29,141   Collecting wheel
2023-11-03T14:46:29,156     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB)
2023-11-03T14:46:31,518   Installing collected packages: wheel
2023-11-03T14:46:31,736     Creating /tmp/pip-build-env-fa7h6kgn/normal/local/bin
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2023-11-03T14:46:31,750   Successfully installed wheel-0.41.3
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2023-11-03T14:46:32,206   Created temporary directory: /tmp/pip-modern-metadata-jz2v237r
2023-11-03T14:46:32,208   Preparing metadata (pyproject.toml): started
2023-11-03T14:46:32,209   Running command Preparing metadata (pyproject.toml)
2023-11-03T14:46:34,485   running dist_info
2023-11-03T14:46:34,487   creating /tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info
2023-11-03T14:46:34,492   writing /tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/PKG-INFO
2023-11-03T14:46:34,496   writing dependency_links to /tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/dependency_links.txt
2023-11-03T14:46:34,498   writing requirements to /tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/requires.txt
2023-11-03T14:46:34,500   writing top-level names to /tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/top_level.txt
2023-11-03T14:46:34,502   writing manifest file '/tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:34,524   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,525   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,526   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,526   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,527   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,527   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,528   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,529   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,529   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,530   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,531   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,531   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,532   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,532   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,533   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,533   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,533   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,534   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,535   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,535   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,536   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,536   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,537   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,538   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,538   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,539   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,539   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,540   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,541   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,541   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,542   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,542   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,542   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,543   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,543   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,544   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,544   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,545   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,545   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,546   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,547   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,547   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,548   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,548   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,549   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,549   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,550   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,550   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,551   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,551   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,552   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,552   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,552   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,553   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,553   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:34,554   reading manifest file '/tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:34,557   reading manifest template 'MANIFEST.in'
2023-11-03T14:46:34,779   no previously-included directories found matching 'moleculekit/test-data'
2023-11-03T14:46:34,780   no previously-included directories found matching 'moleculekit/tests'
2023-11-03T14:46:34,782   no previously-included directories found matching 'package'
2023-11-03T14:46:34,782   adding license file 'LICENSE'
2023-11-03T14:46:34,794   writing manifest file '/tmp/pip-modern-metadata-jz2v237r/moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:34,801   creating '/tmp/pip-modern-metadata-jz2v237r/moleculekit-1.8.6.dist-info'
2023-11-03T14:46:35,028   Preparing metadata (pyproject.toml): finished with status 'done'
2023-11-03T14:46:35,033   Source in /tmp/pip-wheel-uunykyrf/moleculekit_2a8817f250604f3fa03ea2c6be232773 has version 1.8.6, which satisfies requirement moleculekit==1.8.6 from https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz
2023-11-03T14:46:35,034   Removed moleculekit==1.8.6 from https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz from build tracker '/tmp/pip-build-tracker-rv8ysca1'
2023-11-03T14:46:35,039 Created temporary directory: /tmp/pip-unpack-b_yyaie7
2023-11-03T14:46:35,040 Created temporary directory: /tmp/pip-unpack-101xt4xm
2023-11-03T14:46:35,048 Building wheels for collected packages: moleculekit
2023-11-03T14:46:35,052   Created temporary directory: /tmp/pip-wheel-5jj32s9_
2023-11-03T14:46:35,053   Destination directory: /tmp/pip-wheel-5jj32s9_
2023-11-03T14:46:35,055   Building wheel for moleculekit (pyproject.toml): started
2023-11-03T14:46:35,057   Running command Building wheel for moleculekit (pyproject.toml)
2023-11-03T14:46:37,180   running bdist_wheel
2023-11-03T14:46:37,194   running build
2023-11-03T14:46:37,195   running build_py
2023-11-03T14:46:37,201   creating build
2023-11-03T14:46:37,202   creating build/lib.linux-armv7l-cpython-311
2023-11-03T14:46:37,202   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,203   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,206   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,208   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,210   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,214   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,215   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,217   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,219   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,221   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,222   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,224   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,226   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,228   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,232   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,233   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,235   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,236   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,238   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,240   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,242   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,244   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:37,247   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,248   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,251   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,252   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,254   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,257   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,259   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,261   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
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2023-11-03T14:46:37,266   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,269   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,270   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,272   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,275   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-11-03T14:46:37,277   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-11-03T14:46:37,278   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-11-03T14:46:37,281   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-11-03T14:46:37,283   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-11-03T14:46:37,286   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,287   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,289   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,291   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,293   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,295   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,297   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-11-03T14:46:37,300   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-11-03T14:46:37,301   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-11-03T14:46:37,303   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-11-03T14:46:37,304   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-11-03T14:46:37,307   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-11-03T14:46:37,309   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,310   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,312   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,314   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,316   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,318   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,321   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,323   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,325   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,327   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,330   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,331   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,333   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,336   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,338   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,340   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-11-03T14:46:37,343   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-11-03T14:46:37,343   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-11-03T14:46:37,346   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-11-03T14:46:37,348   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-11-03T14:46:37,350   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-11-03T14:46:37,351   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-11-03T14:46:37,352   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-11-03T14:46:37,354   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-11-03T14:46:37,356   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-11-03T14:46:37,357   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-11-03T14:46:37,359   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-11-03T14:46:37,361   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-11-03T14:46:37,363   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-11-03T14:46:37,365   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-11-03T14:46:37,366   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-11-03T14:46:37,368   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-11-03T14:46:37,370   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-11-03T14:46:37,372   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-11-03T14:46:37,374   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-11-03T14:46:37,375   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-11-03T14:46:37,378   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-11-03T14:46:37,380   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-11-03T14:46:37,382   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-11-03T14:46:37,384   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-11-03T14:46:37,385   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-11-03T14:46:37,388   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-11-03T14:46:37,389   running egg_info
2023-11-03T14:46:37,394   writing moleculekit.egg-info/PKG-INFO
2023-11-03T14:46:37,397   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-11-03T14:46:37,398   writing requirements to moleculekit.egg-info/requires.txt
2023-11-03T14:46:37,399   writing top-level names to moleculekit.egg-info/top_level.txt
2023-11-03T14:46:37,411   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,411   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,412   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,413   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,413   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,414   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,414   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,414   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,415   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,415   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,416   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,416   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,417   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,417   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,418   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,419   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,419   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,420   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,421   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,421   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,422   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,423   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,423   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,423   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,424   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,424   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,425   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,425   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,426   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,426   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,427   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,427   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,428   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,429   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,429   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,430   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,430   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,431   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,431   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,432   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,433   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,433   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,433   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,434   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,434   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,435   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,435   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,436   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,436   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,437   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,437   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,438   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,438   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,439   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,439   dependency /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T14:46:37,440   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:37,440   reading manifest template 'MANIFEST.in'
2023-11-03T14:46:37,629   no previously-included directories found matching 'moleculekit/test-data'
2023-11-03T14:46:37,630   no previously-included directories found matching 'moleculekit/tests'
2023-11-03T14:46:37,631   no previously-included directories found matching 'package'
2023-11-03T14:46:37,631   adding license file 'LICENSE'
2023-11-03T14:46:37,646   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T14:46:37,654   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-11-03T14:46:37,654   !!

2023-11-03T14:46:37,655           ********************************************************************************
2023-11-03T14:46:37,656           ############################
2023-11-03T14:46:37,656           # Package would be ignored #
2023-11-03T14:46:37,656           ############################
2023-11-03T14:46:37,657           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-11-03T14:46:37,657           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,658           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,659           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-11-03T14:46:37,659           to the `packages` configuration field.

2023-11-03T14:46:37,660           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,660           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,661           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,662           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,663           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,664           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-11-03T14:46:37,665           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-11-03T14:46:37,665           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,666           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,666           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,667           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,669           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,670           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,671                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,672                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,672                 directory, all directories are treated like packages.
2023-11-03T14:46:37,673           ********************************************************************************

2023-11-03T14:46:37,674   !!
2023-11-03T14:46:37,674     check.warn(importable)
2023-11-03T14:46:37,675   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-11-03T14:46:37,675   !!

2023-11-03T14:46:37,676           ********************************************************************************
2023-11-03T14:46:37,677           ############################
2023-11-03T14:46:37,677           # Package would be ignored #
2023-11-03T14:46:37,678           ############################
2023-11-03T14:46:37,678           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-11-03T14:46:37,679           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,680           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,681           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-11-03T14:46:37,682           to the `packages` configuration field.

2023-11-03T14:46:37,683           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,683           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,684           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,684           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,685           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,686           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-11-03T14:46:37,686           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-11-03T14:46:37,687           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,687           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,687           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,688           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,689           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,690           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,691                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,691                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,692                 directory, all directories are treated like packages.
2023-11-03T14:46:37,692           ********************************************************************************

2023-11-03T14:46:37,693   !!
2023-11-03T14:46:37,694     check.warn(importable)
2023-11-03T14:46:37,694   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-11-03T14:46:37,695   !!

2023-11-03T14:46:37,696           ********************************************************************************
2023-11-03T14:46:37,696           ############################
2023-11-03T14:46:37,697           # Package would be ignored #
2023-11-03T14:46:37,697           ############################
2023-11-03T14:46:37,698           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-11-03T14:46:37,698           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,699           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,700           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-11-03T14:46:37,701           to the `packages` configuration field.

2023-11-03T14:46:37,702           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,702           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,703           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,704           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,710           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,722           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-11-03T14:46:37,722           already explicitly excluding 'moleculekit.distance_utils' via
2023-11-03T14:46:37,723           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,724           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,724           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,725           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,726           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,727           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,728                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,728                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,729                 directory, all directories are treated like packages.
2023-11-03T14:46:37,729           ********************************************************************************

2023-11-03T14:46:37,730   !!
2023-11-03T14:46:37,730     check.warn(importable)
2023-11-03T14:46:37,731   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-11-03T14:46:37,731   !!

2023-11-03T14:46:37,732           ********************************************************************************
2023-11-03T14:46:37,733           ############################
2023-11-03T14:46:37,733           # Package would be ignored #
2023-11-03T14:46:37,736           ############################
2023-11-03T14:46:37,746           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-11-03T14:46:37,752           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,753           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,754           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-11-03T14:46:37,754           to the `packages` configuration field.

2023-11-03T14:46:37,755           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,756           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,756           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,757           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,758           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,759           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-11-03T14:46:37,761           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-11-03T14:46:37,762           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,763           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,763           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,764           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,767           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,783           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,784                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,784                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,785                 directory, all directories are treated like packages.
2023-11-03T14:46:37,786           ********************************************************************************

2023-11-03T14:46:37,787   !!
2023-11-03T14:46:37,787     check.warn(importable)
2023-11-03T14:46:37,788   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-11-03T14:46:37,789   !!

2023-11-03T14:46:37,790           ********************************************************************************
2023-11-03T14:46:37,791           ############################
2023-11-03T14:46:37,792           # Package would be ignored #
2023-11-03T14:46:37,792           ############################
2023-11-03T14:46:37,792           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-11-03T14:46:37,793           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,794           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,794           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-11-03T14:46:37,798           to the `packages` configuration field.

2023-11-03T14:46:37,803           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,806           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,809           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,811           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,812           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,813           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-11-03T14:46:37,813           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-11-03T14:46:37,814           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,814           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,815           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,816           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,817           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,819           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,819                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,820                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,820                 directory, all directories are treated like packages.
2023-11-03T14:46:37,821           ********************************************************************************

2023-11-03T14:46:37,822   !!
2023-11-03T14:46:37,823     check.warn(importable)
2023-11-03T14:46:37,823   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-11-03T14:46:37,824   !!

2023-11-03T14:46:37,825           ********************************************************************************
2023-11-03T14:46:37,826           ############################
2023-11-03T14:46:37,826           # Package would be ignored #
2023-11-03T14:46:37,827           ############################
2023-11-03T14:46:37,828           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-11-03T14:46:37,828           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,829           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,830           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-11-03T14:46:37,830           to the `packages` configuration field.

2023-11-03T14:46:37,832           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,832           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,833           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,834           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,836           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,837           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-11-03T14:46:37,837           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-11-03T14:46:37,838           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,838           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,839           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,839           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,840           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,842           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,842                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,843                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,843                 directory, all directories are treated like packages.
2023-11-03T14:46:37,844           ********************************************************************************

2023-11-03T14:46:37,845   !!
2023-11-03T14:46:37,845     check.warn(importable)
2023-11-03T14:46:37,846   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-11-03T14:46:37,846   !!

2023-11-03T14:46:37,847           ********************************************************************************
2023-11-03T14:46:37,848           ############################
2023-11-03T14:46:37,848           # Package would be ignored #
2023-11-03T14:46:37,849           ############################
2023-11-03T14:46:37,850           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-11-03T14:46:37,851           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,852           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,853           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-11-03T14:46:37,853           to the `packages` configuration field.

2023-11-03T14:46:37,855           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,855           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,856           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,857           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,858           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,859           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-11-03T14:46:37,860           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-11-03T14:46:37,861           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,861           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,862           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,863           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,864           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,866           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,867                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,867                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,868                 directory, all directories are treated like packages.
2023-11-03T14:46:37,869           ********************************************************************************

2023-11-03T14:46:37,870   !!
2023-11-03T14:46:37,870     check.warn(importable)
2023-11-03T14:46:37,871   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-11-03T14:46:37,871   !!

2023-11-03T14:46:37,872           ********************************************************************************
2023-11-03T14:46:37,872           ############################
2023-11-03T14:46:37,873           # Package would be ignored #
2023-11-03T14:46:37,873           ############################
2023-11-03T14:46:37,874           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-11-03T14:46:37,874           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:37,875           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:37,876           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-11-03T14:46:37,876           to the `packages` configuration field.

2023-11-03T14:46:37,877           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:37,877           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:37,878           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:37,879           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:37,880           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:37,882           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-11-03T14:46:37,882           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-11-03T14:46:37,883           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:37,883           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:37,884           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:37,885           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:37,887           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:37,889           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:37,889                 even if it does not contain any `.py` files.
2023-11-03T14:46:37,890                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:37,891                 directory, all directories are treated like packages.
2023-11-03T14:46:37,891           ********************************************************************************

2023-11-03T14:46:37,892   !!
2023-11-03T14:46:37,896     check.warn(importable)
2023-11-03T14:46:37,901   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-11-03T14:46:37,905   !!

2023-11-03T14:46:37,913           ********************************************************************************
2023-11-03T14:46:37,929           ############################
2023-11-03T14:46:37,959           # Package would be ignored #
2023-11-03T14:46:37,988           ############################
2023-11-03T14:46:38,022           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-11-03T14:46:38,053           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,056           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,057           package, please make sure that 'moleculekit.share' is explicitly added
2023-11-03T14:46:38,062           to the `packages` configuration field.

2023-11-03T14:46:38,063           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,063           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,063           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,064           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,065           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,066           If you don't want 'moleculekit.share' to be distributed and are
2023-11-03T14:46:38,066           already explicitly excluding 'moleculekit.share' via
2023-11-03T14:46:38,066           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,067           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,067           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,068           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,069           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,070           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,071                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,071                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,072                 directory, all directories are treated like packages.
2023-11-03T14:46:38,072           ********************************************************************************

2023-11-03T14:46:38,073   !!
2023-11-03T14:46:38,073     check.warn(importable)
2023-11-03T14:46:38,074   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-11-03T14:46:38,074   !!

2023-11-03T14:46:38,075           ********************************************************************************
2023-11-03T14:46:38,076           ############################
2023-11-03T14:46:38,076           # Package would be ignored #
2023-11-03T14:46:38,077           ############################
2023-11-03T14:46:38,077           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-11-03T14:46:38,078           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,079           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,079           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-11-03T14:46:38,080           to the `packages` configuration field.

2023-11-03T14:46:38,081           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,081           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,082           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,083           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,084           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,085           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-11-03T14:46:38,085           already explicitly excluding 'moleculekit.share.atomselect' via
2023-11-03T14:46:38,086           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,086           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,087           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,088           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,089           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,091           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,091                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,092                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,092                 directory, all directories are treated like packages.
2023-11-03T14:46:38,093           ********************************************************************************

2023-11-03T14:46:38,093   !!
2023-11-03T14:46:38,094     check.warn(importable)
2023-11-03T14:46:38,094   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-11-03T14:46:38,095   !!

2023-11-03T14:46:38,095           ********************************************************************************
2023-11-03T14:46:38,096           ############################
2023-11-03T14:46:38,096           # Package would be ignored #
2023-11-03T14:46:38,097           ############################
2023-11-03T14:46:38,097           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-11-03T14:46:38,098           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,099           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,099           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-11-03T14:46:38,100           to the `packages` configuration field.

2023-11-03T14:46:38,101           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,101           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,102           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,103           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,104           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,105           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-11-03T14:46:38,105           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-11-03T14:46:38,106           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,106           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,107           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,107           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,109           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,110           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,110                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,111                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,111                 directory, all directories are treated like packages.
2023-11-03T14:46:38,112           ********************************************************************************

2023-11-03T14:46:38,113   !!
2023-11-03T14:46:38,113     check.warn(importable)
2023-11-03T14:46:38,114   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-11-03T14:46:38,114   !!

2023-11-03T14:46:38,115           ********************************************************************************
2023-11-03T14:46:38,116           ############################
2023-11-03T14:46:38,117           # Package would be ignored #
2023-11-03T14:46:38,117           ############################
2023-11-03T14:46:38,118           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-11-03T14:46:38,118           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,119           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,119           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-11-03T14:46:38,119           to the `packages` configuration field.

2023-11-03T14:46:38,120           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,120           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,121           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,122           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,123           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,124           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-11-03T14:46:38,124           already explicitly excluding 'moleculekit.tmalign' via
2023-11-03T14:46:38,124           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,125           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,125           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,126           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,127           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,128           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,129                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,129                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,130                 directory, all directories are treated like packages.
2023-11-03T14:46:38,130           ********************************************************************************

2023-11-03T14:46:38,131   !!
2023-11-03T14:46:38,131     check.warn(importable)
2023-11-03T14:46:38,132   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-11-03T14:46:38,133   !!

2023-11-03T14:46:38,134           ********************************************************************************
2023-11-03T14:46:38,134           ############################
2023-11-03T14:46:38,135           # Package would be ignored #
2023-11-03T14:46:38,135           ############################
2023-11-03T14:46:38,135           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-11-03T14:46:38,136           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,137           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,137           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-11-03T14:46:38,138           to the `packages` configuration field.

2023-11-03T14:46:38,139           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,139           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,140           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,141           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,142           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,143           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-11-03T14:46:38,144           already explicitly excluding 'moleculekit.tmalign.include' via
2023-11-03T14:46:38,144           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,145           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,145           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,146           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,147           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,148           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,148                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,149                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,149                 directory, all directories are treated like packages.
2023-11-03T14:46:38,150           ********************************************************************************

2023-11-03T14:46:38,150   !!
2023-11-03T14:46:38,151     check.warn(importable)
2023-11-03T14:46:38,151   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-11-03T14:46:38,152   !!

2023-11-03T14:46:38,153           ********************************************************************************
2023-11-03T14:46:38,153           ############################
2023-11-03T14:46:38,153           # Package would be ignored #
2023-11-03T14:46:38,154           ############################
2023-11-03T14:46:38,154           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-11-03T14:46:38,155           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,156           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,156           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-11-03T14:46:38,157           to the `packages` configuration field.

2023-11-03T14:46:38,157           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,158           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,158           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,159           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,161           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,162           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-11-03T14:46:38,162           already explicitly excluding 'moleculekit.tmalign.src' via
2023-11-03T14:46:38,163           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,163           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,163           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,164           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,165           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,167           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,167                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,168                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,168                 directory, all directories are treated like packages.
2023-11-03T14:46:38,169           ********************************************************************************

2023-11-03T14:46:38,170   !!
2023-11-03T14:46:38,171     check.warn(importable)
2023-11-03T14:46:38,171   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-11-03T14:46:38,172   !!

2023-11-03T14:46:38,172           ********************************************************************************
2023-11-03T14:46:38,173           ############################
2023-11-03T14:46:38,173           # Package would be ignored #
2023-11-03T14:46:38,174           ############################
2023-11-03T14:46:38,174           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-11-03T14:46:38,174           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,175           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,176           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-11-03T14:46:38,176           to the `packages` configuration field.

2023-11-03T14:46:38,177           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,177           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,178           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,179           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,180           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,180           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-11-03T14:46:38,181           already explicitly excluding 'moleculekit.wrapping' via
2023-11-03T14:46:38,181           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,182           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,182           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,183           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,184           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,185           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,186                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,186                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,187                 directory, all directories are treated like packages.
2023-11-03T14:46:38,188           ********************************************************************************

2023-11-03T14:46:38,193   !!
2023-11-03T14:46:38,193     check.warn(importable)
2023-11-03T14:46:38,193   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-11-03T14:46:38,194   !!

2023-11-03T14:46:38,195           ********************************************************************************
2023-11-03T14:46:38,195           ############################
2023-11-03T14:46:38,196           # Package would be ignored #
2023-11-03T14:46:38,196           ############################
2023-11-03T14:46:38,197           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-11-03T14:46:38,197           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,198           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,199           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-11-03T14:46:38,199           to the `packages` configuration field.

2023-11-03T14:46:38,200           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,201           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,202           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,202           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,203           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,204           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-11-03T14:46:38,204           already explicitly excluding 'moleculekit.xtc_utils' via
2023-11-03T14:46:38,205           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,205           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,206           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,207           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,207           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,209           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,209                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,210                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,210                 directory, all directories are treated like packages.
2023-11-03T14:46:38,210           ********************************************************************************

2023-11-03T14:46:38,212   !!
2023-11-03T14:46:38,212     check.warn(importable)
2023-11-03T14:46:38,213   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-11-03T14:46:38,213   !!

2023-11-03T14:46:38,214           ********************************************************************************
2023-11-03T14:46:38,214           ############################
2023-11-03T14:46:38,215           # Package would be ignored #
2023-11-03T14:46:38,215           ############################
2023-11-03T14:46:38,215           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-11-03T14:46:38,216           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,217           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,217           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-11-03T14:46:38,218           to the `packages` configuration field.

2023-11-03T14:46:38,219           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,219           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,220           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,221           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,222           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,223           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-11-03T14:46:38,224           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-11-03T14:46:38,224           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,225           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,225           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,226           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,227           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,229           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,229                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,230                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,230                 directory, all directories are treated like packages.
2023-11-03T14:46:38,231           ********************************************************************************

2023-11-03T14:46:38,231   !!
2023-11-03T14:46:38,232     check.warn(importable)
2023-11-03T14:46:38,232   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-11-03T14:46:38,233   !!

2023-11-03T14:46:38,233           ********************************************************************************
2023-11-03T14:46:38,234           ############################
2023-11-03T14:46:38,234           # Package would be ignored #
2023-11-03T14:46:38,235           ############################
2023-11-03T14:46:38,235           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-11-03T14:46:38,235           but it is absent from setuptools' `packages` configuration.

2023-11-03T14:46:38,236           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T14:46:38,237           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-11-03T14:46:38,237           to the `packages` configuration field.

2023-11-03T14:46:38,238           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T14:46:38,238           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T14:46:38,239           instead of `find_packages(...)`/`find:`).

2023-11-03T14:46:38,240           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T14:46:38,241           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T14:46:38,242           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-11-03T14:46:38,242           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-11-03T14:46:38,243           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T14:46:38,243           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T14:46:38,244           combination with a more fine grained `package-data` configuration.

2023-11-03T14:46:38,245           You can read more about "package data files" on setuptools documentation page:

2023-11-03T14:46:38,245           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T14:46:38,247           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T14:46:38,247                 even if it does not contain any `.py` files.
2023-11-03T14:46:38,248                 On the other hand, currently there is no concept of package data
2023-11-03T14:46:38,248                 directory, all directories are treated like packages.
2023-11-03T14:46:38,249           ********************************************************************************

2023-11-03T14:46:38,250   !!
2023-11-03T14:46:38,250     check.warn(importable)
2023-11-03T14:46:38,251   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:38,251   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:38,252   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-11-03T14:46:38,252   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-11-03T14:46:38,253   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-11-03T14:46:38,254   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-11-03T14:46:38,254   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-11-03T14:46:38,255   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-11-03T14:46:38,255   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-11-03T14:46:38,256   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-11-03T14:46:38,256   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-11-03T14:46:38,256   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-11-03T14:46:38,257   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-11-03T14:46:38,257   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-11-03T14:46:38,258   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-11-03T14:46:38,258   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-11-03T14:46:38,258   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-11-03T14:46:38,259   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-11-03T14:46:38,259   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-11-03T14:46:38,260   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-11-03T14:46:38,260   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-11-03T14:46:38,261   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,261   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,262   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,262   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,263   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,263   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,264   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,264   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,265   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,265   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,266   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,266   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,267   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,267   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,268   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,268   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,269   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,269   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,269   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,270   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,270   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,271   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,271   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,271   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,272   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,272   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,273   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,273   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,274   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,274   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,275   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,275   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,276   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,276   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,277   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,277   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,278   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,278   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,279   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,279   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,279   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,280   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,281   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,281   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,282   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,282   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,283   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,283   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,284   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,284   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,284   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,285   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,285   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,286   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,286   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,286   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,287   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,287   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,288   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,288   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,289   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,289   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,290   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,290   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,291   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,291   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,292   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,292   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,293   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,293   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,294   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,294   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,295   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,295   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,296   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,296   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,296   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,297   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,297   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,298   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,298   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,299   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,299   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,299   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,300   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,300   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,301   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,302   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,302   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,304   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,306   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,307   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,310   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,311   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,314   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,316   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,318   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,320   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,322   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,323   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,326   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,327   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,329   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,331   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,333   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,335   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,337   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,339   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,341   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,343   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,345   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,347   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,349   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,352   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,354   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,356   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,358   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,360   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,362   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,364   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,366   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,368   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,370   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,372   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,374   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,376   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,378   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,380   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,382   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,384   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,386   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,388   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,390   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,392   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,394   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,395   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,398   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,400   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,402   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,404   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,406   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,408   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,410   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,411   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,414   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,416   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,418   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,420   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,422   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,424   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,426   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,428   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,430   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,432   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,434   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,436   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,438   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,440   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,442   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,444   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,446   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,448   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,450   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,452   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,454   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,456   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,458   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,460   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,462   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,464   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,466   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,468   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,470   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,472   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,474   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,476   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-11-03T14:46:38,478   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-11-03T14:46:38,479   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-11-03T14:46:38,498   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-11-03T14:46:38,500   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-11-03T14:46:38,502   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-11-03T14:46:38,503   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-11-03T14:46:38,505   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-11-03T14:46:38,506   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-11-03T14:46:38,511   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-11-03T14:46:38,512   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-11-03T14:46:38,531   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-11-03T14:46:38,533   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-11-03T14:46:38,533   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-11-03T14:46:38,552   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-11-03T14:46:38,554   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-11-03T14:46:38,556   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-11-03T14:46:38,557   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-11-03T14:46:38,559   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-11-03T14:46:38,562   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-11-03T14:46:38,563   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-11-03T14:46:38,564   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-11-03T14:46:38,568   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-11-03T14:46:38,571   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-11-03T14:46:38,573   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-11-03T14:46:38,574   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-11-03T14:46:38,595   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-11-03T14:46:38,597   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-11-03T14:46:38,598   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-11-03T14:46:38,617   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-11-03T14:46:38,619   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-11-03T14:46:38,620   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-11-03T14:46:38,641   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-11-03T14:46:38,643   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-11-03T14:46:38,644   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-11-03T14:46:38,664   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-11-03T14:46:38,674   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-11-03T14:46:38,675   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.6'
2023-11-03T14:46:38,675   running build_ext
2023-11-03T14:46:38,684   building 'moleculekit.interactions.hbonds' extension
2023-11-03T14:46:38,685   creating build/temp.linux-armv7l-cpython-311
2023-11-03T14:46:38,685   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-11-03T14:46:38,686   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-11-03T14:46:38,686   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-11-03T14:46:38,687   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-11-03T14:46:39,012   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:46:39,013                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:46:39,013                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:46:39,014                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-11-03T14:46:39,014   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:46:39,015      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:46:39,015         |  ^~~~~~~
2023-11-03T14:47:09,351   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:47:09,641   building 'moleculekit.interactions.pipi' extension
2023-11-03T14:47:09,641   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-11-03T14:47:09,642   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-11-03T14:47:09,946   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:47:09,946                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:47:09,947                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:47:09,948                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-11-03T14:47:09,948   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:47:09,949      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:47:09,949         |  ^~~~~~~
2023-11-03T14:47:42,778   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:47:43,065   building 'moleculekit.interactions.cationpi' extension
2023-11-03T14:47:43,066   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-11-03T14:47:43,067   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-11-03T14:47:43,405   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:47:43,405                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:47:43,406                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:47:43,406                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-11-03T14:47:43,407   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:47:43,407      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:47:43,408         |  ^~~~~~~
2023-11-03T14:48:15,587   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:48:15,866   building 'moleculekit.interactions.sigmahole' extension
2023-11-03T14:48:15,867   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-11-03T14:48:15,867   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-11-03T14:48:16,170   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:48:16,171                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:48:16,171                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:48:16,172                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-11-03T14:48:16,172   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:48:16,173      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:48:16,174         |  ^~~~~~~
2023-11-03T14:48:47,970   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:48:48,250   building 'moleculekit.wrapping' extension
2023-11-03T14:48:48,250   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-11-03T14:48:48,251   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-11-03T14:48:48,559   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:48:48,559                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:48:48,560                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:48:48,560                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-11-03T14:48:48,561   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:48:48,561      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:48:48,562         |  ^~~~~~~
2023-11-03T14:49:16,638   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:49:16,831   building 'moleculekit.bondguesser_utils' extension
2023-11-03T14:49:16,831   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-11-03T14:49:16,832   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-11-03T14:49:17,133   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:49:17,134                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:49:17,135                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:49:17,135                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-11-03T14:49:17,136   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:49:17,136      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:49:17,137         |  ^~~~~~~
2023-11-03T14:49:19,448   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-11-03T14:49:19,449   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-03T14:49:19,449   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-11-03T14:49:19,450         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-11-03T14:49:19,451   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-03T14:49:19,451   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-11-03T14:49:19,452         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-11-03T14:49:19,452   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-03T14:49:19,453   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-11-03T14:49:19,453         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-11-03T14:49:19,454   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,455   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T14:49:19,455         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,456   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,457   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T14:49:19,457         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,458   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,459   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,459         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,460   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,461   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T14:49:19,461         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,462   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,463   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T14:49:19,463         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,464   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,464   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T14:49:19,465         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,466   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,466   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,467         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,468   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,468   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T14:49:19,469         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,470   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,470   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,471         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,471   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,472   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T14:49:19,472         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,473   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,474   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,474         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,475   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,475   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,476         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,476   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,477   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T14:49:19,477         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,478   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,478   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T14:49:19,479         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,480   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,480   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,481         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,482   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,483   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T14:49:19,483         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,484   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,485   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,485         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,486   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,487   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T14:49:19,487         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,488   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,489   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,491         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,492   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T14:49:19,492   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T14:49:19,493         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,493   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-11-03T14:49:19,494   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T14:49:19,494   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-11-03T14:49:19,495         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-11-03T14:49:19,495   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T14:49:19,496   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-11-03T14:49:19,496         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-11-03T14:49:45,974   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:49:46,243   building 'moleculekit.atomselect_utils' extension
2023-11-03T14:49:46,244   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-11-03T14:49:46,245   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-11-03T14:49:46,551   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:49:46,552                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:49:46,553                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:49:46,553                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-11-03T14:49:46,554   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:49:46,554      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:49:46,555         |  ^~~~~~~
2023-11-03T14:49:49,085   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-11-03T14:49:49,086   moleculekit/atomselect_utils/atomselect_utils.cpp:23737:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T14:49:49,087   23737 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-11-03T14:49:49,088         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-11-03T14:49:49,093   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-11-03T14:49:49,094   moleculekit/atomselect_utils/atomselect_utils.cpp:23989:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T14:49:49,094   23989 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-11-03T14:49:49,095         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T14:49:49,101   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-11-03T14:49:49,101   moleculekit/atomselect_utils/atomselect_utils.cpp:24256:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T14:49:49,102   24256 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-11-03T14:49:49,102         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T14:50:23,606   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:50:23,900   building 'moleculekit.distance_utils' extension
2023-11-03T14:50:23,900   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-11-03T14:50:23,901   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-11-03T14:50:24,208   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:50:24,209                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:50:24,210                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:50:24,210                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-11-03T14:50:24,211   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:50:24,211      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:50:24,212         |  ^~~~~~~
2023-11-03T14:51:02,645   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:51:02,939   building 'moleculekit.occupancy_utils' extension
2023-11-03T14:51:02,939   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-11-03T14:51:02,940   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-11-03T14:51:03,250   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:51:03,251                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:51:03,251                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:51:03,252                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-11-03T14:51:03,253   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:51:03,253      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:51:03,254         |  ^~~~~~~
2023-11-03T14:51:30,535   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:51:30,728   building 'moleculekit.xtc' extension
2023-11-03T14:51:30,729   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-11-03T14:51:30,729   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-11-03T14:51:30,730   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-11-03T14:51:31,374   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,375      66 |         "OK",
2023-11-03T14:51:31,375         |         ^~~~
2023-11-03T14:51:31,377   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,377      67 |         "Header",
2023-11-03T14:51:31,378         |         ^~~~~~~~
2023-11-03T14:51:31,378   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,379      68 |         "String",
2023-11-03T14:51:31,379         |         ^~~~~~~~
2023-11-03T14:51:31,380   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,380      69 |         "Double",
2023-11-03T14:51:31,381         |         ^~~~~~~~
2023-11-03T14:51:31,382   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,382      70 |         "Integer",
2023-11-03T14:51:31,383         |         ^~~~~~~~~
2023-11-03T14:51:31,383   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,384      71 |         "Float",
2023-11-03T14:51:31,385         |         ^~~~~~~
2023-11-03T14:51:31,385   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,386      72 |         "Unsigned integer",
2023-11-03T14:51:31,386         |         ^~~~~~~~~~~~~~~~~~
2023-11-03T14:51:31,387   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,388      73 |         "Compressed 3D coordinate",
2023-11-03T14:51:31,389         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:51:31,389   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,390      74 |         "Closing file",
2023-11-03T14:51:31,391         |         ^~~~~~~~~~~~~~
2023-11-03T14:51:31,392   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,392      75 |         "Magic number",
2023-11-03T14:51:31,393         |         ^~~~~~~~~~~~~~
2023-11-03T14:51:31,394   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,394      76 |         "Not enough memory",
2023-11-03T14:51:31,395         |         ^~~~~~~~~~~~~~~~~~~
2023-11-03T14:51:31,396   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,397      77 |         "End of file",
2023-11-03T14:51:31,397         |         ^~~~~~~~~~~~~
2023-11-03T14:51:31,398   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T14:51:31,399      78 |         "File not found"
2023-11-03T14:51:31,399         |         ^~~~~~~~~~~~~~~~
2023-11-03T14:51:31,400   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-11-03T14:51:31,401   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,401     459 |     while (size >= num && num_of_bits < 32)
2023-11-03T14:51:31,402         |            ~~~~~^~~~~~
2023-11-03T14:51:31,403   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-11-03T14:51:31,403   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,404     505 |     while (bytes[num_of_bytes] >= num)
2023-11-03T14:51:31,405         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-11-03T14:51:31,406   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-11-03T14:51:31,406   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,407     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-11-03T14:51:31,407         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-11-03T14:51:31,408   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,408     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-11-03T14:51:31,409         |                             ~~^~~~~~~~~~~~~~
2023-11-03T14:51:31,409   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,410     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-11-03T14:51:31,410         |                             ~~^~~~~~~~~~~~~~~~
2023-11-03T14:51:31,411   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-11-03T14:51:31,411   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,412     664 |                 if (lastbits < num_of_bits)
2023-11-03T14:51:31,413         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-11-03T14:51:31,413   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-11-03T14:51:31,414   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,415     785 |         if(size3>xfp->buf1size)
2023-11-03T14:51:31,415         |            ~~~~~^~~~~~~~~~~~~~
2023-11-03T14:51:31,416   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,417     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T14:51:31,418         |                          ^
2023-11-03T14:51:31,418   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,419     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-11-03T14:51:31,420         |                                    ~~~~~~~~~^~~~~~~~
2023-11-03T14:51:31,420   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,421     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-11-03T14:51:31,422         |                                    ~~~~~~~~~^~~~~~~~
2023-11-03T14:51:31,422   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,423     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-11-03T14:51:31,424         |                                    ~~~~~~~~~^~~~~~~~
2023-11-03T14:51:31,424   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,425     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-11-03T14:51:31,426         |                                    ~~~~~~~~~^~~~~~~~
2023-11-03T14:51:31,426   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,427     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-11-03T14:51:31,428         |                                    ~~~~~~~~~^~~~~~~~
2023-11-03T14:51:31,429   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,429     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-11-03T14:51:31,430         |                                    ~~~~~~~~~^~~~~~~~
2023-11-03T14:51:31,430   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-11-03T14:51:31,430     756 |         int smallidx,  minidx, maxidx;
2023-11-03T14:51:31,431         |                        ^~~~~~
2023-11-03T14:51:31,432   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-11-03T14:51:31,432     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-11-03T14:51:31,433         |                                ^~~~~~
2023-11-03T14:51:31,433   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-11-03T14:51:31,434     763 |         int errval=1;
2023-11-03T14:51:31,434         |             ^~~~~~
2023-11-03T14:51:31,435   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-11-03T14:51:31,436   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,436    1011 |         if(size3>xfp->buf1size)
2023-11-03T14:51:31,437         |            ~~~~~^~~~~~~~~~~~~~
2023-11-03T14:51:31,438   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,438    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-11-03T14:51:31,439         |                                 ~~~~~~~~^~~~~~~
2023-11-03T14:51:31,440   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,440    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-11-03T14:51:31,441         |                           ~~~~~~~~^~~~~~~
2023-11-03T14:51:31,442   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,442    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-11-03T14:51:31,443         |                           ~~~~~~~~^~~~~~~
2023-11-03T14:51:31,444   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,444    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-11-03T14:51:31,445         |                         ^
2023-11-03T14:51:31,446   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,446    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T14:51:31,447         |                          ^
2023-11-03T14:51:31,448   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,448    1275 |         if(tmp==(unsigned int)buf2[0])
2023-11-03T14:51:31,449         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:51:31,450   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-11-03T14:51:31,451    1001 |         int errval;
2023-11-03T14:51:31,451         |             ^~~~~~
2023-11-03T14:51:31,452   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-11-03T14:51:31,452   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,453    1316 |         if(size3>xfp->buf1size)
2023-11-03T14:51:31,453         |            ~~~~~^~~~~~~~~~~~~~
2023-11-03T14:51:31,454   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,454    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T14:51:31,455         |                          ^
2023-11-03T14:51:31,455   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-11-03T14:51:31,456    1289 |         int smallidx,  maxidx, minidx;
2023-11-03T14:51:31,456         |                                ^~~~~~
2023-11-03T14:51:31,457   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-11-03T14:51:31,457    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-11-03T14:51:31,458         |                                ^~~~~~
2023-11-03T14:51:31,458   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-11-03T14:51:31,459    1297 |         int errval=1;
2023-11-03T14:51:31,460         |             ^~~~~~
2023-11-03T14:51:31,460   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-11-03T14:51:31,461   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,462    1513 |         if(size3>xfp->buf1size) {
2023-11-03T14:51:31,462         |            ~~~~~^~~~~~~~~~~~~~
2023-11-03T14:51:31,463   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,464    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-11-03T14:51:31,464         |                         ^
2023-11-03T14:51:31,465   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T14:51:31,466    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T14:51:31,467         |                          ^
2023-11-03T14:51:31,467   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T14:51:31,468    1743 |         if(tmp==(unsigned int)buf2[0])
2023-11-03T14:51:31,469         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-11-03T14:51:31,470   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-11-03T14:51:31,470    1504 |         int errval=1;
2023-11-03T14:51:31,471         |             ^~~~~~
2023-11-03T14:51:34,289   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-11-03T14:51:34,556   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-11-03T14:51:35,327   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-11-03T14:51:35,328   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-11-03T14:51:35,328     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-11-03T14:51:35,329         |             ^~~
2023-11-03T14:51:35,338   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-11-03T14:51:35,338   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-11-03T14:51:35,339     418 |         int nf3 = nframes * 3;
2023-11-03T14:51:35,339         |             ^~~
2023-11-03T14:51:35,346   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-11-03T14:51:35,346   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-11-03T14:51:35,347     491 |         int reading_index = 0;
2023-11-03T14:51:35,347         |             ^~~~~~~~~~~~~
2023-11-03T14:51:35,348   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-11-03T14:51:35,348     492 |         int writing_index = 0;
2023-11-03T14:51:35,349         |             ^~~~~~~~~~~~~
2023-11-03T14:51:36,230   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-11-03T14:51:36,537   In file included from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T14:51:36,538                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T14:51:36,538                    from /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T14:51:36,539                    from moleculekit/xtc_utils/xtc.cpp:1234:
2023-11-03T14:51:36,539   /tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T14:51:36,540      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T14:51:36,541         |  ^~~~~~~
2023-11-03T14:52:00,394   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:52:00,674   building 'moleculekit.tmalign' extension
2023-11-03T14:52:00,675   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-11-03T14:52:00,675   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-11-03T14:52:00,676   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-11-03T14:52:34,481   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-fa7h6kgn/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-11-03T14:52:57,057   In file included from /usr/include/c++/12/vector:70,
2023-11-03T14:52:57,057                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-11-03T14:52:57,057   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-11-03T14:52:57,058   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-11-03T14:52:57,058     439 |       vector<_Tp, _Alloc>::
2023-11-03T14:52:57,059         |       ^~~~~~~~~~~~~~~~~~~
2023-11-03T14:52:57,859   In file included from /usr/include/c++/12/vector:64:
2023-11-03T14:52:57,860   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-11-03T14:52:57,861       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20760:32,
2023-11-03T14:52:57,861       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-11-03T14:52:57,862   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-03T14:52:57,863    1287 |           _M_realloc_insert(end(), __x);
2023-11-03T14:52:57,864         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T14:52:57,865   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-11-03T14:52:57,865       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20774:33,
2023-11-03T14:52:57,866       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-11-03T14:52:57,866   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-03T14:52:57,867    1287 |           _M_realloc_insert(end(), __x);
2023-11-03T14:52:57,868         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T14:52:57,869   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-11-03T14:52:57,869       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20859:34,
2023-11-03T14:52:57,870       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-11-03T14:52:57,871   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-03T14:52:57,872    1287 |           _M_realloc_insert(end(), __x);
2023-11-03T14:52:57,872         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T14:53:00,228   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-11-03T14:53:00,616   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-11-03T14:53:00,617   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.6'
2023-11-03T14:53:00,617   installing to build/bdist.linux-armv7l/wheel
2023-11-03T14:53:00,618   running install
2023-11-03T14:53:00,642   running install_lib
2023-11-03T14:53:00,648   creating build/bdist.linux-armv7l
2023-11-03T14:53:00,649   creating build/bdist.linux-armv7l/wheel
2023-11-03T14:53:00,651   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,652   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,655   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,660   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,699   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-03T14:53:00,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-03T14:53:00,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-03T14:53:00,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,737   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,762   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,766   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,768   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,778   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-03T14:53:00,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-03T14:53:00,781   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-03T14:53:00,782   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,785   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,794   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,796   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T14:53:00,798   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,800   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,802   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T14:53:00,803   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T14:53:00,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T14:53:00,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T14:53:00,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:00,818   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-03T14:53:00,819   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-03T14:53:00,839   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-03T14:53:00,841   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T14:53:00,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T14:53:00,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T14:53:01,055   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T14:53:01,058   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-11-03T14:53:01,062   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,065   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,067   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,071   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,073   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,075   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,077   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,079   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,081   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,085   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,087   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,091   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,093   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,095   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,097   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,099   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,102   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,104   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,106   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,108   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,110   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,112   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,114   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,115   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,117   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,119   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,120   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,124   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,126   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,128   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,130   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,132   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,133   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,135   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,137   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,139   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,141   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,142   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,144   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,150   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,152   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,154   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,155   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,157   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,159   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,160   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,162   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,164   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,165   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,167   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,169   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,171   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,173   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,175   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,177   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,178   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,180   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,182   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,184   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,186   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,189   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,191   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,193   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,196   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,198   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,200   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,201   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,203   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,205   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,207   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,209   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,211   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,213   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,214   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,216   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,218   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,219   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,221   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,223   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,225   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,227   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,229   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,231   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,233   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,235   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,238   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,240   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,243   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,245   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,246   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,249   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,251   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,253   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,257   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,259   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,262   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,264   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,266   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,268   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,273   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,275   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,277   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,279   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,282   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,284   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,286   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,288   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,290   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,292   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,298   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,300   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,303   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,305   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,310   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,312   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,314   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,321   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,323   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,325   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,330   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,332   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,334   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,336   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,338   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,340   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,343   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,345   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,347   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,349   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,351   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,353   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,354   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,356   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,358   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,360   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,362   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,366   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,368   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,369   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,371   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,373   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,378   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,380   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,381   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,383   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,385   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,388   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,390   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,391   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,393   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,395   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,397   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T14:53:01,399   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-11-03T14:53:01,400   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-11-03T14:53:01,402   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,404   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,406   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,407   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T14:53:01,408   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T14:53:01,411   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T14:53:01,413   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T14:53:01,415   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T14:53:01,417   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,419   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,421   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,425   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,428   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T14:53:01,431   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,433   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-03T14:53:01,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-03T14:53:01,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-03T14:53:01,460   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,463   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,485   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-11-03T14:53:01,486   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T14:53:01,487   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T14:53:01,489   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T14:53:01,491   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T14:53:01,493   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T14:53:01,495   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T14:53:01,496   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T14:53:01,499   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T14:53:01,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T14:53:01,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T14:53:01,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-11-03T14:53:01,507   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-03T14:53:01,508   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-03T14:53:01,510   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-03T14:53:01,512   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,514   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,540   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,543   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-03T14:53:01,544   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-03T14:53:01,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-03T14:53:01,579   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,579   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,606   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,626   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-03T14:53:01,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-03T14:53:01,647   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-03T14:53:01,649   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,652   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-03T14:53:01,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-03T14:53:01,671   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-03T14:53:01,674   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-03T14:53:01,675   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-03T14:53:01,701   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-03T14:53:01,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T14:53:01,756   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-03T14:53:01,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-03T14:53:01,760   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-03T14:53:01,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,781   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,783   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T14:53:01,785   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T14:53:01,785   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T14:53:01,787   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T14:53:01,789   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T14:53:01,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T14:53:01,793   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T14:53:01,813   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T14:53:01,815   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T14:53:01,816   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T14:53:01,820   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T14:53:01,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T14:53:01,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,828   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,830   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,849   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T14:53:01,851   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-11-03T14:53:01,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-11-03T14:53:01,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T14:53:01,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T14:53:01,860   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-11-03T14:53:01,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-11-03T14:53:01,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T14:53:01,894   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,937   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,940   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T14:53:01,942   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,943   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,945   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,947   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,950   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,952   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,955   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,957   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,959   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,961   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,970   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T14:53:01,977   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T14:53:01,978   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T14:53:01,980   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T14:53:01,982   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T14:53:01,985   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T14:53:01,987   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-03T14:53:01,987   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-03T14:53:01,990   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-03T14:53:02,017   running install_egg_info
2023-11-03T14:53:02,023   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.6-py3.11.egg-info
2023-11-03T14:53:02,037   running install_scripts
2023-11-03T14:53:02,102   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.6.dist-info/WHEEL
2023-11-03T14:53:02,105   creating '/tmp/pip-wheel-5jj32s9_/.tmp-ivjnpphq/moleculekit-1.8.6-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-03T14:53:02,109   adding 'moleculekit/__init__.py'
2023-11-03T14:53:02,110   adding 'moleculekit/_version.py'
2023-11-03T14:53:02,113   adding 'moleculekit/align.py'
2023-11-03T14:53:02,451   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:02,465   adding 'moleculekit/bondguesser.py'
2023-11-03T14:53:02,709   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:02,719   adding 'moleculekit/config.py'
2023-11-03T14:53:02,721   adding 'moleculekit/dihedral.py'
2023-11-03T14:53:02,722   adding 'moleculekit/distance.py'
2023-11-03T14:53:03,034   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:03,047   adding 'moleculekit/home.py'
2023-11-03T14:53:03,048   adding 'moleculekit/logging.ini'
2023-11-03T14:53:03,062   adding 'moleculekit/molecule.py'
2023-11-03T14:53:03,290   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:03,301   adding 'moleculekit/opm.py'
2023-11-03T14:53:03,303   adding 'moleculekit/periodictable.py'
2023-11-03T14:53:03,304   adding 'moleculekit/pymolgraphics.py'
2023-11-03T14:53:03,305   adding 'moleculekit/rcsb.py'
2023-11-03T14:53:03,306   adding 'moleculekit/rdkitintegration.py'
2023-11-03T14:53:03,318   adding 'moleculekit/readers.py'
2023-11-03T14:53:03,916   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:03,943   adding 'moleculekit/util.py'
2023-11-03T14:53:03,944   adding 'moleculekit/version.py'
2023-11-03T14:53:03,946   adding 'moleculekit/viewer.py'
2023-11-03T14:53:03,947   adding 'moleculekit/vmd_wrapper'
2023-11-03T14:53:03,949   adding 'moleculekit/vmdgraphics.py'
2023-11-03T14:53:03,951   adding 'moleculekit/vmdviewer.py'
2023-11-03T14:53:04,186   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:04,200   adding 'moleculekit/writers.py'
2023-11-03T14:53:04,461   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:04,472   adding 'moleculekit/atomselect/__init__.py'
2023-11-03T14:53:04,474   adding 'moleculekit/atomselect/analyze.py'
2023-11-03T14:53:04,476   adding 'moleculekit/atomselect/atomselect.py'
2023-11-03T14:53:04,478   adding 'moleculekit/atomselect/languageparser.py'
2023-11-03T14:53:04,583   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-11-03T14:53:04,596   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-11-03T14:53:04,687   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-11-03T14:53:04,698   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-11-03T14:53:04,798   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-11-03T14:53:04,810   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-11-03T14:53:04,812   adding 'moleculekit/interactions/__init__.py'
2023-11-03T14:53:05,091   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:05,359   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:05,372   adding 'moleculekit/interactions/interactions.py'
2023-11-03T14:53:05,649   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:05,935   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-11-03T14:53:06,037   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-11-03T14:53:06,048   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-11-03T14:53:06,139   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-11-03T14:53:06,150   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-11-03T14:53:06,241   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-11-03T14:53:06,252   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-11-03T14:53:06,343   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-11-03T14:53:06,354   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-11-03T14:53:06,441   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-11-03T14:53:06,451   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-11-03T14:53:06,453   adding 'moleculekit/pdbx/__init__.py'
2023-11-03T14:53:06,456   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-11-03T14:53:06,459   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-11-03T14:53:06,461   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-11-03T14:53:06,462   adding 'moleculekit/pdbx/reader/__init__.py'
2023-11-03T14:53:06,464   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-11-03T14:53:06,465   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-11-03T14:53:06,467   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-11-03T14:53:06,468   adding 'moleculekit/pdbx/tests/__init__.py'
2023-11-03T14:53:06,470   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-11-03T14:53:06,471   adding 'moleculekit/pdbx/writer/__init__.py'
2023-11-03T14:53:06,472   adding 'moleculekit/ply/__init__.py'
2023-11-03T14:53:06,476   adding 'moleculekit/ply/lex.py'
2023-11-03T14:53:06,488   adding 'moleculekit/ply/yacc.py'
2023-11-03T14:53:06,490   adding 'moleculekit/projections/__init__.py'
2023-11-03T14:53:06,492   adding 'moleculekit/projections/metriccoordinate.py'
2023-11-03T14:53:06,495   adding 'moleculekit/projections/metricdihedral.py'
2023-11-03T14:53:06,499   adding 'moleculekit/projections/metricdistance.py'
2023-11-03T14:53:06,501   adding 'moleculekit/projections/metricfluctuation.py'
2023-11-03T14:53:06,503   adding 'moleculekit/projections/metricgyration.py'
2023-11-03T14:53:06,506   adding 'moleculekit/projections/metricplumed2.py'
2023-11-03T14:53:06,508   adding 'moleculekit/projections/metricrmsd.py'
2023-11-03T14:53:06,510   adding 'moleculekit/projections/metricsasa.py'
2023-11-03T14:53:06,512   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-11-03T14:53:06,514   adding 'moleculekit/projections/metricshell.py'
2023-11-03T14:53:06,515   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-11-03T14:53:06,517   adding 'moleculekit/projections/metrictmscore.py'
2023-11-03T14:53:06,518   adding 'moleculekit/projections/projection.py'
2023-11-03T14:53:06,519   adding 'moleculekit/projections/util.py'
2023-11-03T14:53:06,522   adding 'moleculekit/share/ALA.cif'
2023-11-03T14:53:06,523   adding 'moleculekit/share/backbone.cif'
2023-11-03T14:53:07,819   adding 'moleculekit/share/opm_sequences.json'
2023-11-03T14:53:07,928   adding 'moleculekit/share/atomselect/atomselect.json'
2023-11-03T14:53:07,933   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-11-03T14:53:07,934   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-11-03T14:53:07,935   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-11-03T14:53:07,937   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-11-03T14:53:07,938   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-11-03T14:53:07,939   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-11-03T14:53:07,940   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-11-03T14:53:07,942   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-11-03T14:53:07,943   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-11-03T14:53:07,944   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-11-03T14:53:07,945   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-11-03T14:53:07,947   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-11-03T14:53:07,948   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-11-03T14:53:07,949   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-11-03T14:53:07,950   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-11-03T14:53:07,952   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-11-03T14:53:07,953   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-11-03T14:53:07,954   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-11-03T14:53:07,955   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-11-03T14:53:07,956   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-11-03T14:53:07,958   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-11-03T14:53:07,959   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-11-03T14:53:07,960   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-11-03T14:53:07,961   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-11-03T14:53:07,963   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-11-03T14:53:07,964   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-11-03T14:53:07,965   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-11-03T14:53:07,966   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-11-03T14:53:07,967   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-11-03T14:53:07,969   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-11-03T14:53:07,970   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-11-03T14:53:07,971   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-11-03T14:53:07,973   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-11-03T14:53:07,974   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-11-03T14:53:07,975   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-11-03T14:53:07,976   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-11-03T14:53:07,978   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-11-03T14:53:07,979   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-11-03T14:53:07,980   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-11-03T14:53:07,981   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-11-03T14:53:07,983   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-11-03T14:53:07,984   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-11-03T14:53:07,985   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-11-03T14:53:07,986   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-11-03T14:53:07,988   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-11-03T14:53:07,989   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-11-03T14:53:07,990   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-11-03T14:53:07,991   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-11-03T14:53:07,993   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-11-03T14:53:07,994   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-11-03T14:53:07,995   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-11-03T14:53:07,996   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-11-03T14:53:07,998   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-11-03T14:53:07,999   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-11-03T14:53:08,000   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-11-03T14:53:08,002   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-11-03T14:53:08,003   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-11-03T14:53:08,004   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-11-03T14:53:08,005   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-11-03T14:53:08,007   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-11-03T14:53:08,008   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-11-03T14:53:08,009   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-11-03T14:53:08,010   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-11-03T14:53:08,012   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-11-03T14:53:08,013   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-11-03T14:53:08,015   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-11-03T14:53:08,016   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-11-03T14:53:08,018   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-11-03T14:53:08,019   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-11-03T14:53:08,020   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-11-03T14:53:08,022   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-11-03T14:53:08,023   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-11-03T14:53:08,024   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-11-03T14:53:08,025   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-11-03T14:53:08,026   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-11-03T14:53:08,027   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-11-03T14:53:08,029   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-11-03T14:53:08,030   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-11-03T14:53:08,031   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-11-03T14:53:08,033   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-11-03T14:53:08,034   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-11-03T14:53:08,036   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-11-03T14:53:08,037   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-11-03T14:53:08,039   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-11-03T14:53:08,040   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-11-03T14:53:08,042   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-11-03T14:53:08,043   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-11-03T14:53:08,044   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-11-03T14:53:08,045   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-11-03T14:53:08,047   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-11-03T14:53:08,048   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-11-03T14:53:08,049   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-11-03T14:53:08,050   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-11-03T14:53:08,052   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-11-03T14:53:08,054   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-11-03T14:53:08,055   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-11-03T14:53:08,056   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-11-03T14:53:08,058   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-11-03T14:53:08,059   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-11-03T14:53:08,060   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-11-03T14:53:08,061   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-11-03T14:53:08,062   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-11-03T14:53:08,064   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-11-03T14:53:08,065   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-11-03T14:53:08,066   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-11-03T14:53:08,067   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-11-03T14:53:08,069   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-11-03T14:53:08,070   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-11-03T14:53:08,071   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-11-03T14:53:08,072   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-11-03T14:53:08,073   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-11-03T14:53:08,075   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-11-03T14:53:08,076   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-11-03T14:53:08,077   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-11-03T14:53:08,079   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-11-03T14:53:08,080   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-11-03T14:53:08,081   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-11-03T14:53:08,083   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-11-03T14:53:08,084   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-11-03T14:53:08,085   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-11-03T14:53:08,086   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-11-03T14:53:08,088   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-11-03T14:53:08,089   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-11-03T14:53:08,090   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-11-03T14:53:08,091   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-11-03T14:53:08,093   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-11-03T14:53:08,094   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-11-03T14:53:08,095   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-11-03T14:53:08,096   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-11-03T14:53:08,098   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-11-03T14:53:08,099   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-11-03T14:53:08,100   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-11-03T14:53:08,101   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-11-03T14:53:08,102   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-11-03T14:53:08,104   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-11-03T14:53:08,105   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-11-03T14:53:08,106   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-11-03T14:53:08,107   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-11-03T14:53:08,108   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-11-03T14:53:08,109   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-11-03T14:53:08,111   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-11-03T14:53:08,112   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-11-03T14:53:08,113   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-11-03T14:53:08,114   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-11-03T14:53:08,116   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-11-03T14:53:08,117   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-11-03T14:53:08,118   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-11-03T14:53:08,119   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-11-03T14:53:08,120   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-11-03T14:53:08,122   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-11-03T14:53:08,123   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-11-03T14:53:08,124   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-11-03T14:53:08,125   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-11-03T14:53:08,126   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-11-03T14:53:08,128   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-11-03T14:53:08,129   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-11-03T14:53:08,130   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-11-03T14:53:08,132   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-11-03T14:53:08,133   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-11-03T14:53:08,134   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-11-03T14:53:08,136   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-11-03T14:53:08,137   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-11-03T14:53:08,139   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-11-03T14:53:08,140   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-11-03T14:53:08,141   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-11-03T14:53:08,142   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-11-03T14:53:08,144   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-11-03T14:53:08,145   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-11-03T14:53:08,146   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-11-03T14:53:08,148   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-11-03T14:53:08,149   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-11-03T14:53:08,150   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-11-03T14:53:08,151   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-11-03T14:53:08,153   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-11-03T14:53:08,154   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-11-03T14:53:08,156   adding 'moleculekit/smallmol/__init__.py'
2023-11-03T14:53:08,161   adding 'moleculekit/smallmol/smallmol.py'
2023-11-03T14:53:08,163   adding 'moleculekit/smallmol/smallmollib.py'
2023-11-03T14:53:08,165   adding 'moleculekit/smallmol/test_smallmol.py'
2023-11-03T14:53:08,166   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-11-03T14:53:08,168   adding 'moleculekit/smallmol/util.py'
2023-11-03T14:53:08,170   adding 'moleculekit/smallmol/tools/__init__.py'
2023-11-03T14:53:08,172   adding 'moleculekit/smallmol/tools/clustering.py'
2023-11-03T14:53:08,177   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-11-03T14:53:08,178   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-11-03T14:53:08,268   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-11-03T14:53:08,278   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-11-03T14:53:08,279   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-11-03T14:53:08,281   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-11-03T14:53:08,298   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-11-03T14:53:08,301   adding 'moleculekit/tools/__init__.py'
2023-11-03T14:53:08,303   adding 'moleculekit/tools/atomtyper.py'
2023-11-03T14:53:08,306   adding 'moleculekit/tools/autosegment.py'
2023-11-03T14:53:08,307   adding 'moleculekit/tools/crystalpacking.py'
2023-11-03T14:53:08,311   adding 'moleculekit/tools/detect.py'
2023-11-03T14:53:08,313   adding 'moleculekit/tools/docking.py'
2023-11-03T14:53:08,315   adding 'moleculekit/tools/graphalignment.py'
2023-11-03T14:53:08,316   adding 'moleculekit/tools/hhblitsprofile.py'
2023-11-03T14:53:08,317   adding 'moleculekit/tools/moleculechecks.py'
2023-11-03T14:53:08,323   adding 'moleculekit/tools/preparation.py'
2023-11-03T14:53:08,326   adding 'moleculekit/tools/preparation_customres.py'
2023-11-03T14:53:08,328   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-11-03T14:53:08,331   adding 'moleculekit/tools/voxeldescriptors.py'
2023-11-03T14:53:08,333   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-11-03T14:53:08,334   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-11-03T14:53:08,422   adding 'moleculekit/wrapping/wrapping.cpp'
2023-11-03T14:53:08,432   adding 'moleculekit/wrapping/wrapping.pyx'
2023-11-03T14:53:08,521   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-11-03T14:53:08,532   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-11-03T14:53:08,533   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-11-03T14:53:08,537   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-11-03T14:53:08,538   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-11-03T14:53:08,540   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-11-03T14:53:08,547   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-11-03T14:53:08,548   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-11-03T14:53:08,551   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-11-03T14:53:08,553   adding 'moleculekit-1.8.6.dist-info/LICENSE'
2023-11-03T14:53:08,554   adding 'moleculekit-1.8.6.dist-info/METADATA'
2023-11-03T14:53:08,555   adding 'moleculekit-1.8.6.dist-info/WHEEL'
2023-11-03T14:53:08,556   adding 'moleculekit-1.8.6.dist-info/top_level.txt'
2023-11-03T14:53:08,561   adding 'moleculekit-1.8.6.dist-info/RECORD'
2023-11-03T14:53:08,714   removing build/bdist.linux-armv7l/wheel
2023-11-03T14:53:08,998   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-11-03T14:53:09,297   Created wheel for moleculekit: filename=moleculekit-1.8.6-cp311-cp311-linux_armv7l.whl size=12881766 sha256=057f6711f313d82fab91399622320e751a21b1c42442b8dff22f40884223896a
2023-11-03T14:53:09,299   Stored in directory: /tmp/pip-ephem-wheel-cache-lcumn58n/wheels/b0/0b/22/c96d0cc9ad1ea22f0a99e5a0dbbf75ebb6dcafe8d21ba7791e
2023-11-03T14:53:09,322 Successfully built moleculekit
2023-11-03T14:53:09,615 Removed build tracker: '/tmp/pip-build-tracker-rv8ysca1'