2023-11-03T16:44:07,739 Created temporary directory: /tmp/pip-build-tracker-t5eutqa2
2023-11-03T16:44:07,741 Initialized build tracking at /tmp/pip-build-tracker-t5eutqa2
2023-11-03T16:44:07,741 Created build tracker: /tmp/pip-build-tracker-t5eutqa2
2023-11-03T16:44:07,741 Entered build tracker: /tmp/pip-build-tracker-t5eutqa2
2023-11-03T16:44:07,742 Created temporary directory: /tmp/pip-wheel-p13g5wkj
2023-11-03T16:44:07,746 Created temporary directory: /tmp/pip-ephem-wheel-cache-5r2s4fbh
2023-11-03T16:44:07,769 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-03T16:44:07,772 2 location(s) to search for versions of moleculekit:
2023-11-03T16:44:07,772 * https://pypi.org/simple/moleculekit/
2023-11-03T16:44:07,772 * https://www.piwheels.org/simple/moleculekit/
2023-11-03T16:44:07,773 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-11-03T16:44:07,773 Getting page https://pypi.org/simple/moleculekit/
2023-11-03T16:44:07,775 Found index url https://pypi.org/simple/
2023-11-03T16:44:07,828 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-11-03T16:44:07,867   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,867   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-11-03T16:44:07,867   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,868   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-11-03T16:44:07,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,868   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-11-03T16:44:07,868   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,869   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-11-03T16:44:07,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,869   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-11-03T16:44:07,869   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,870   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-11-03T16:44:07,870   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,870   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-11-03T16:44:07,870   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,870   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-11-03T16:44:07,871   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,871   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-11-03T16:44:07,871   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,871   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-11-03T16:44:07,872   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,872   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-11-03T16:44:07,872   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,872   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-11-03T16:44:07,873   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,873   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-11-03T16:44:07,873   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,873   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-11-03T16:44:07,874   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,874   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-11-03T16:44:07,874   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,874   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-11-03T16:44:07,875   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,875   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-11-03T16:44:07,875   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,875   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-11-03T16:44:07,876   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,876   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-11-03T16:44:07,876   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,876   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-11-03T16:44:07,876   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,877   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-11-03T16:44:07,877   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,877   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-11-03T16:44:07,877   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,878   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-11-03T16:44:07,878   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,878   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-11-03T16:44:07,878   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,879   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-11-03T16:44:07,879   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,879   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-11-03T16:44:07,879   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,879   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-11-03T16:44:07,880   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,880   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-11-03T16:44:07,880   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,880   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-11-03T16:44:07,881   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,881   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-11-03T16:44:07,881   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,881   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-11-03T16:44:07,882   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,882   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-11-03T16:44:07,882   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-03T16:44:07,882   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-11-03T16:44:07,924   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2023-11-03T16:44:07,925   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-11-03T16:44:07,925   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-11-03T16:44:07,926   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-11-03T16:44:07,926   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-11-03T16:44:07,927   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-11-03T16:44:07,927   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-11-03T16:44:07,928   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-11-03T16:44:07,928   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-11-03T16:44:07,929   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-11-03T16:44:07,930   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-11-03T16:44:07,930   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-11-03T16:44:07,931   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-11-03T16:44:07,931   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-11-03T16:44:07,932   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-11-03T16:44:07,932   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-11-03T16:44:07,933   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-11-03T16:44:07,933   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-11-03T16:44:07,934   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-11-03T16:44:07,934   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-11-03T16:44:07,935   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-11-03T16:44:07,936   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-11-03T16:44:07,936 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-11-03T16:44:07,936 Getting page https://www.piwheels.org/simple/moleculekit/
2023-11-03T16:44:07,937 Found index url https://www.piwheels.org/simple/
2023-11-03T16:44:08,014 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2023-11-03T16:44:08,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.6-cp311-cp311-linux_armv7l.whl#sha256=057f6711f313d82fab91399622320e751a21b1c42442b8dff22f40884223896a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-11-03T16:44:08,091   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.2-cp311-cp311-linux_armv6l.whl#sha256=0337d66a25e1d926417b3ec1f4fa41e0392c2e47a15677e6a9851c8e8be740d9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-11-03T16:44:08,092   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.7.17-cp39-cp39-linux_armv7l.whl#sha256=885ac80555f3166751d89984b0b94dbb3c5fa2e22658ba0bf20b5582384dffb8 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-11-03T16:44:08,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T16:44:08,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,116   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,117   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,118   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,119   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,120   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,121   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,122   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,123   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,124   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,125   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,126   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,127   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T16:44:08,129   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T16:44:08,129   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,130   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-03T16:44:08,130   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,130   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,130   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,131   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,132   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,133   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,134   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,135   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,136   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,137   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,138   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,139   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-11-03T16:44:08,139 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-11-03T16:44:08,139 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-11-03T16:44:08,182 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-11-03T16:44:08,200 Collecting moleculekit==1.8.6
2023-11-03T16:44:08,202   Created temporary directory: /tmp/pip-unpack-yotubuto
2023-11-03T16:44:08,248   Downloading moleculekit-1.8.6.tar.gz (6.2 MB)
2023-11-03T16:44:10,220   Added moleculekit==1.8.6 from https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz to build tracker '/tmp/pip-build-tracker-t5eutqa2'
2023-11-03T16:44:10,229   Created temporary directory: /tmp/pip-build-env-s1zammkr
2023-11-03T16:44:10,238   Installing build dependencies: started
2023-11-03T16:44:10,239   Running command pip subprocess to install build dependencies
2023-11-03T16:44:11,390   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-11-03T16:44:11,925   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-03T16:44:13,497   Collecting setuptools
2023-11-03T16:44:13,572     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB)
2023-11-03T16:44:14,943   Collecting numpy>=1.18.5
2023-11-03T16:44:16,288     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.1-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-11-03T16:44:18,598   Collecting Cython>=0.29.21
2023-11-03T16:44:19,598     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.5-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-11-03T16:44:19,961   Collecting toml
2023-11-03T16:44:19,977     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-11-03T16:44:20,080   Collecting versioneer[toml]==0.28
2023-11-03T16:44:20,099     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-11-03T16:44:20,229   Collecting tomli (from versioneer[toml]==0.28)
2023-11-03T16:44:20,244     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-11-03T16:44:22,523   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-11-03T16:44:23,048     Creating /tmp/pip-build-env-s1zammkr/overlay/bin
2023-11-03T16:44:23,050     changing mode of /tmp/pip-build-env-s1zammkr/overlay/bin/versioneer to 755
2023-11-03T16:44:33,027     changing mode of /tmp/pip-build-env-s1zammkr/overlay/bin/f2py to 755
2023-11-03T16:44:36,564     changing mode of /tmp/pip-build-env-s1zammkr/overlay/bin/cygdb to 755
2023-11-03T16:44:36,566     changing mode of /tmp/pip-build-env-s1zammkr/overlay/bin/cython to 755
2023-11-03T16:44:36,568     changing mode of /tmp/pip-build-env-s1zammkr/overlay/bin/cythonize to 755
2023-11-03T16:44:36,593   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-11-03T16:44:36,593   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.1 which is incompatible.
2023-11-03T16:44:36,594   Successfully installed Cython-3.0.5 numpy-1.26.1 setuptools-68.2.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2023-11-03T16:44:36,791   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-03T16:44:36,791   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-03T16:44:37,224   Installing build dependencies: finished with status 'done'
2023-11-03T16:44:37,229   Getting requirements to build wheel: started
2023-11-03T16:44:37,230   Running command Getting requirements to build wheel
2023-11-03T16:45:15,629   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,630   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,630   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,630   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-11-03T16:45:15,631   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-03T16:45:15,632   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-11-03T16:45:15,632   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-11-03T16:45:15,632   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-11-03T16:45:15,632   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-11-03T16:45:15,632   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-11-03T16:45:15,632   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-11-03T16:45:15,632   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-11-03T16:45:15,633   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-11-03T16:45:15,633   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-11-03T16:45:15,633   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-11-03T16:45:15,633   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-11-03T16:45:15,907   running egg_info
2023-11-03T16:45:15,914   writing moleculekit.egg-info/PKG-INFO
2023-11-03T16:45:15,917   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-11-03T16:45:15,919   writing requirements to moleculekit.egg-info/requires.txt
2023-11-03T16:45:15,920   writing top-level names to moleculekit.egg-info/top_level.txt
2023-11-03T16:45:15,944   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,944   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,944   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,944   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,944   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,944   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,945   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,946   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,947   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,948   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,949   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,950   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,951   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,951   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,951   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,951   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:15,959   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:15,991   reading manifest template 'MANIFEST.in'
2023-11-03T16:45:16,213   no previously-included directories found matching 'moleculekit/test-data'
2023-11-03T16:45:16,214   no previously-included directories found matching 'moleculekit/tests'
2023-11-03T16:45:16,215   no previously-included directories found matching 'package'
2023-11-03T16:45:16,216   adding license file 'LICENSE'
2023-11-03T16:45:16,233   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:17,286   Getting requirements to build wheel: finished with status 'done'
2023-11-03T16:45:17,302   Installing backend dependencies: started
2023-11-03T16:45:17,303   Running command pip subprocess to install backend dependencies
2023-11-03T16:45:18,554   Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-11-03T16:45:19,138   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-03T16:45:19,502   Collecting wheel
2023-11-03T16:45:19,522     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB)
2023-11-03T16:45:21,132   Installing collected packages: wheel
2023-11-03T16:45:21,351     Creating /tmp/pip-build-env-s1zammkr/normal/bin
2023-11-03T16:45:21,353     changing mode of /tmp/pip-build-env-s1zammkr/normal/bin/wheel to 755
2023-11-03T16:45:21,365   Successfully installed wheel-0.41.3

2023-11-03T16:45:21,559   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-03T16:45:21,559   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-03T16:45:21,774   Installing backend dependencies: finished with status 'done'
2023-11-03T16:45:21,777   Created temporary directory: /tmp/pip-modern-metadata-m98txyy5
2023-11-03T16:45:21,779   Preparing metadata (pyproject.toml): started
2023-11-03T16:45:21,780   Running command Preparing metadata (pyproject.toml)
2023-11-03T16:45:24,113   running dist_info
2023-11-03T16:45:24,115   creating /tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info
2023-11-03T16:45:24,121   writing /tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/PKG-INFO
2023-11-03T16:45:24,125   writing dependency_links to /tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/dependency_links.txt
2023-11-03T16:45:24,127   writing requirements to /tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/requires.txt
2023-11-03T16:45:24,128   writing top-level names to /tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/top_level.txt
2023-11-03T16:45:24,129   writing manifest file '/tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:24,154   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,154   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,154   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,154   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,155   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,156   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,157   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,158   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,159   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,160   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,161   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:24,168   reading manifest file '/tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:24,170   reading manifest template 'MANIFEST.in'
2023-11-03T16:45:24,396   no previously-included directories found matching 'moleculekit/test-data'
2023-11-03T16:45:24,396   no previously-included directories found matching 'moleculekit/tests'
2023-11-03T16:45:24,397   no previously-included directories found matching 'package'
2023-11-03T16:45:24,397   adding license file 'LICENSE'
2023-11-03T16:45:24,409   writing manifest file '/tmp/pip-modern-metadata-m98txyy5/moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:24,418   creating '/tmp/pip-modern-metadata-m98txyy5/moleculekit-1.8.6.dist-info'
2023-11-03T16:45:24,612   Preparing metadata (pyproject.toml): finished with status 'done'
2023-11-03T16:45:24,618   Source in /tmp/pip-wheel-p13g5wkj/moleculekit_fa30d09f8f594cc880b81d2053698044 has version 1.8.6, which satisfies requirement moleculekit==1.8.6 from https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz
2023-11-03T16:45:24,619   Removed moleculekit==1.8.6 from https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz from build tracker '/tmp/pip-build-tracker-t5eutqa2'
2023-11-03T16:45:24,625 Created temporary directory: /tmp/pip-unpack-1cggft70
2023-11-03T16:45:24,626 Created temporary directory: /tmp/pip-unpack-8qfi12e4
2023-11-03T16:45:24,634 Building wheels for collected packages: moleculekit
2023-11-03T16:45:24,638   Created temporary directory: /tmp/pip-wheel-qw063ipd
2023-11-03T16:45:24,638   Destination directory: /tmp/pip-wheel-qw063ipd
2023-11-03T16:45:24,640   Building wheel for moleculekit (pyproject.toml): started
2023-11-03T16:45:24,641   Running command Building wheel for moleculekit (pyproject.toml)
2023-11-03T16:45:26,879   running bdist_wheel
2023-11-03T16:45:26,897   running build
2023-11-03T16:45:26,897   running build_py
2023-11-03T16:45:26,905   creating build
2023-11-03T16:45:26,906   creating build/lib.linux-armv7l-cpython-39
2023-11-03T16:45:26,907   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,909   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,911   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,914   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,916   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2023-11-03T16:45:26,925   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,928   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,930   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,932   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,935   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,937   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,938   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2023-11-03T16:45:26,943   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,948   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,950   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,951   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,954   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,957   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,959   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:26,962   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
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2023-11-03T16:45:26,966   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,967   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,970   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,973   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,976   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,978   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,981   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-03T16:45:26,984   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-03T16:45:26,985   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-03T16:45:26,988   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-03T16:45:26,991   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-03T16:45:26,992   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-03T16:45:26,996   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-03T16:45:26,997   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-03T16:45:27,003   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,004   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,007   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,010   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,012   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,015   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,017   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,020   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,022   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,024   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,027   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,030   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,033   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,036   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,038   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,041   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-03T16:45:27,045   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,046   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,049   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,051   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,053   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,056   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,059   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,061   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,064   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,066   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,069   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,072   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,075   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,078   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-03T16:45:27,081   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-03T16:45:27,082   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-03T16:45:27,085   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-03T16:45:27,088   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-03T16:45:27,089   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-03T16:45:27,093   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-11-03T16:45:27,094   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-11-03T16:45:27,096   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-11-03T16:45:27,099   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-03T16:45:27,100   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-03T16:45:27,103   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-03T16:45:27,105   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-03T16:45:27,107   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-03T16:45:27,110   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-03T16:45:27,111   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-03T16:45:27,114   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-03T16:45:27,117   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-03T16:45:27,119   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-03T16:45:27,122   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-03T16:45:27,123   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-03T16:45:27,126   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-03T16:45:27,128   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-03T16:45:27,130   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-03T16:45:27,133   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-11-03T16:45:27,134   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-11-03T16:45:27,136   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-11-03T16:45:27,138   running egg_info
2023-11-03T16:45:27,145   writing moleculekit.egg-info/PKG-INFO
2023-11-03T16:45:27,148   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-11-03T16:45:27,150   writing requirements to moleculekit.egg-info/requires.txt
2023-11-03T16:45:27,152   writing top-level names to moleculekit.egg-info/top_level.txt
2023-11-03T16:45:27,166   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,166   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,167   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,167   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,168   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,168   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,168   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,169   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,169   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,169   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,170   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,170   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,170   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,171   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,171   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,171   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,172   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,172   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,173   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,173   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,173   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,174   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,174   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,174   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,175   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,175   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,175   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,176   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,176   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,176   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,177   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,177   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,177   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,178   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,178   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,178   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,179   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,179   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,179   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,180   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,180   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,180   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,181   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,181   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,181   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,182   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,182   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,182   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,183   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,183   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,184   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,184   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,184   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,185   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,185   dependency /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-03T16:45:27,191   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:27,200   reading manifest template 'MANIFEST.in'
2023-11-03T16:45:27,447   no previously-included directories found matching 'moleculekit/test-data'
2023-11-03T16:45:27,448   no previously-included directories found matching 'moleculekit/tests'
2023-11-03T16:45:27,449   no previously-included directories found matching 'package'
2023-11-03T16:45:27,450   adding license file 'LICENSE'
2023-11-03T16:45:27,467   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-03T16:45:27,477   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-11-03T16:45:27,478   !!

2023-11-03T16:45:27,478           ********************************************************************************
2023-11-03T16:45:27,478           ############################
2023-11-03T16:45:27,478           # Package would be ignored #
2023-11-03T16:45:27,478           ############################
2023-11-03T16:45:27,478           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-11-03T16:45:27,478           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,479           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,479           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-11-03T16:45:27,479           to the `packages` configuration field.

2023-11-03T16:45:27,479           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,479           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,479           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,480           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,480           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,480           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-11-03T16:45:27,480           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-11-03T16:45:27,480           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,480           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,481           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,481           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,481           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,481           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,481                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,481                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,482                 directory, all directories are treated like packages.
2023-11-03T16:45:27,482           ********************************************************************************

2023-11-03T16:45:27,482   !!
2023-11-03T16:45:27,482     check.warn(importable)
2023-11-03T16:45:27,483   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-11-03T16:45:27,483   !!

2023-11-03T16:45:27,483           ********************************************************************************
2023-11-03T16:45:27,484           ############################
2023-11-03T16:45:27,484           # Package would be ignored #
2023-11-03T16:45:27,484           ############################
2023-11-03T16:45:27,484           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-11-03T16:45:27,484           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,484           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,484           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-11-03T16:45:27,484           to the `packages` configuration field.

2023-11-03T16:45:27,485           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,485           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,485           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,485           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,485           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,486           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-11-03T16:45:27,486           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-11-03T16:45:27,486           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,486           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,486           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,486           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,486           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,487           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,487                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,487                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,487                 directory, all directories are treated like packages.
2023-11-03T16:45:27,487           ********************************************************************************

2023-11-03T16:45:27,487   !!
2023-11-03T16:45:27,487     check.warn(importable)
2023-11-03T16:45:27,491   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-11-03T16:45:27,491   !!

2023-11-03T16:45:27,491           ********************************************************************************
2023-11-03T16:45:27,491           ############################
2023-11-03T16:45:27,492           # Package would be ignored #
2023-11-03T16:45:27,492           ############################
2023-11-03T16:45:27,492           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-11-03T16:45:27,492           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,492           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,492           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-11-03T16:45:27,492           to the `packages` configuration field.

2023-11-03T16:45:27,493           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,493           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,493           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,493           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,493           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,494           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-11-03T16:45:27,494           already explicitly excluding 'moleculekit.distance_utils' via
2023-11-03T16:45:27,494           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,494           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,494           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,494           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,495           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,495           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,495                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,495                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,495                 directory, all directories are treated like packages.
2023-11-03T16:45:27,495           ********************************************************************************

2023-11-03T16:45:27,496   !!
2023-11-03T16:45:27,496     check.warn(importable)
2023-11-03T16:45:27,496   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-11-03T16:45:27,496   !!

2023-11-03T16:45:27,496           ********************************************************************************
2023-11-03T16:45:27,496           ############################
2023-11-03T16:45:27,496           # Package would be ignored #
2023-11-03T16:45:27,497           ############################
2023-11-03T16:45:27,497           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-11-03T16:45:27,497           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,497           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,497           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-11-03T16:45:27,497           to the `packages` configuration field.

2023-11-03T16:45:27,498           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,498           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,498           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,498           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,498           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,498           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-11-03T16:45:27,499           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-11-03T16:45:27,499           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,499           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,499           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,499           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,499           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,500           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,500                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,500                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,500                 directory, all directories are treated like packages.
2023-11-03T16:45:27,500           ********************************************************************************

2023-11-03T16:45:27,500   !!
2023-11-03T16:45:27,500     check.warn(importable)
2023-11-03T16:45:27,501   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-11-03T16:45:27,501   !!

2023-11-03T16:45:27,501           ********************************************************************************
2023-11-03T16:45:27,501           ############################
2023-11-03T16:45:27,501           # Package would be ignored #
2023-11-03T16:45:27,501           ############################
2023-11-03T16:45:27,501           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-11-03T16:45:27,501           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,502           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,502           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-11-03T16:45:27,502           to the `packages` configuration field.

2023-11-03T16:45:27,502           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,502           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,502           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,503           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,503           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,503           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-11-03T16:45:27,503           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-11-03T16:45:27,503           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,503           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,504           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,504           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,504           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,504           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,504                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,505                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,505                 directory, all directories are treated like packages.
2023-11-03T16:45:27,505           ********************************************************************************

2023-11-03T16:45:27,505   !!
2023-11-03T16:45:27,505     check.warn(importable)
2023-11-03T16:45:27,505   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-11-03T16:45:27,505   !!

2023-11-03T16:45:27,506           ********************************************************************************
2023-11-03T16:45:27,506           ############################
2023-11-03T16:45:27,506           # Package would be ignored #
2023-11-03T16:45:27,506           ############################
2023-11-03T16:45:27,506           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-11-03T16:45:27,506           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,506           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,507           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-11-03T16:45:27,507           to the `packages` configuration field.

2023-11-03T16:45:27,507           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,507           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,507           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,507           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,507           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,508           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-11-03T16:45:27,508           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-11-03T16:45:27,508           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,508           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,508           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,508           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,509           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,509           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,509                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,509                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,509                 directory, all directories are treated like packages.
2023-11-03T16:45:27,509           ********************************************************************************

2023-11-03T16:45:27,510   !!
2023-11-03T16:45:27,510     check.warn(importable)
2023-11-03T16:45:27,510   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-11-03T16:45:27,510   !!

2023-11-03T16:45:27,510           ********************************************************************************
2023-11-03T16:45:27,510           ############################
2023-11-03T16:45:27,511           # Package would be ignored #
2023-11-03T16:45:27,511           ############################
2023-11-03T16:45:27,511           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-11-03T16:45:27,511           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,511           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,511           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-11-03T16:45:27,511           to the `packages` configuration field.

2023-11-03T16:45:27,512           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,512           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,512           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,512           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,512           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,513           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-11-03T16:45:27,513           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-11-03T16:45:27,513           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,513           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,513           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,513           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,514           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,514           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,514                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,514                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,514                 directory, all directories are treated like packages.
2023-11-03T16:45:27,514           ********************************************************************************

2023-11-03T16:45:27,515   !!
2023-11-03T16:45:27,515     check.warn(importable)
2023-11-03T16:45:27,515   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-11-03T16:45:27,515   !!

2023-11-03T16:45:27,515           ********************************************************************************
2023-11-03T16:45:27,515           ############################
2023-11-03T16:45:27,515           # Package would be ignored #
2023-11-03T16:45:27,515           ############################
2023-11-03T16:45:27,516           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-11-03T16:45:27,516           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,516           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,516           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-11-03T16:45:27,516           to the `packages` configuration field.

2023-11-03T16:45:27,516           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,516           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,517           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,517           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,517           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,517           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-11-03T16:45:27,517           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-11-03T16:45:27,517           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,518           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,518           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,518           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,518           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,518           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,518                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,519                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,519                 directory, all directories are treated like packages.
2023-11-03T16:45:27,519           ********************************************************************************

2023-11-03T16:45:27,519   !!
2023-11-03T16:45:27,519     check.warn(importable)
2023-11-03T16:45:27,519   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-11-03T16:45:27,519   !!

2023-11-03T16:45:27,520           ********************************************************************************
2023-11-03T16:45:27,520           ############################
2023-11-03T16:45:27,520           # Package would be ignored #
2023-11-03T16:45:27,520           ############################
2023-11-03T16:45:27,520           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-11-03T16:45:27,520           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,520           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,520           package, please make sure that 'moleculekit.share' is explicitly added
2023-11-03T16:45:27,521           to the `packages` configuration field.

2023-11-03T16:45:27,521           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,521           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,521           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,521           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,521           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,522           If you don't want 'moleculekit.share' to be distributed and are
2023-11-03T16:45:27,522           already explicitly excluding 'moleculekit.share' via
2023-11-03T16:45:27,522           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,522           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,522           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,522           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,523           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,523           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,523                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,523                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,523                 directory, all directories are treated like packages.
2023-11-03T16:45:27,523           ********************************************************************************

2023-11-03T16:45:27,524   !!
2023-11-03T16:45:27,524     check.warn(importable)
2023-11-03T16:45:27,524   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-11-03T16:45:27,524   !!

2023-11-03T16:45:27,524           ********************************************************************************
2023-11-03T16:45:27,524           ############################
2023-11-03T16:45:27,524           # Package would be ignored #
2023-11-03T16:45:27,524           ############################
2023-11-03T16:45:27,525           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-11-03T16:45:27,525           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,525           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,525           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-11-03T16:45:27,525           to the `packages` configuration field.

2023-11-03T16:45:27,525           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,525           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,526           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,526           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,526           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,526           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-11-03T16:45:27,526           already explicitly excluding 'moleculekit.share.atomselect' via
2023-11-03T16:45:27,526           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,527           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,527           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,527           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,527           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,527           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,528                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,528                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,528                 directory, all directories are treated like packages.
2023-11-03T16:45:27,528           ********************************************************************************

2023-11-03T16:45:27,528   !!
2023-11-03T16:45:27,528     check.warn(importable)
2023-11-03T16:45:27,528   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-11-03T16:45:27,528   !!

2023-11-03T16:45:27,529           ********************************************************************************
2023-11-03T16:45:27,529           ############################
2023-11-03T16:45:27,529           # Package would be ignored #
2023-11-03T16:45:27,529           ############################
2023-11-03T16:45:27,529           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-11-03T16:45:27,529           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,530           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,530           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-11-03T16:45:27,530           to the `packages` configuration field.

2023-11-03T16:45:27,530           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,530           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,530           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,531           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,531           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,531           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-11-03T16:45:27,531           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-11-03T16:45:27,532           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,532           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,532           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,532           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,533           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,533           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,533                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,534                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,534                 directory, all directories are treated like packages.
2023-11-03T16:45:27,534           ********************************************************************************

2023-11-03T16:45:27,534   !!
2023-11-03T16:45:27,534     check.warn(importable)
2023-11-03T16:45:27,535   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-11-03T16:45:27,535   !!

2023-11-03T16:45:27,535           ********************************************************************************
2023-11-03T16:45:27,535           ############################
2023-11-03T16:45:27,535           # Package would be ignored #
2023-11-03T16:45:27,535           ############################
2023-11-03T16:45:27,536           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-11-03T16:45:27,536           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,536           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,536           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-11-03T16:45:27,536           to the `packages` configuration field.

2023-11-03T16:45:27,536           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,537           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,537           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,537           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,537           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,537           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-11-03T16:45:27,538           already explicitly excluding 'moleculekit.tmalign' via
2023-11-03T16:45:27,538           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,538           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,538           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,538           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,538           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,539           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,539                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,539                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,539                 directory, all directories are treated like packages.
2023-11-03T16:45:27,539           ********************************************************************************

2023-11-03T16:45:27,540   !!
2023-11-03T16:45:27,540     check.warn(importable)
2023-11-03T16:45:27,540   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-11-03T16:45:27,540   !!

2023-11-03T16:45:27,540           ********************************************************************************
2023-11-03T16:45:27,540           ############################
2023-11-03T16:45:27,540           # Package would be ignored #
2023-11-03T16:45:27,540           ############################
2023-11-03T16:45:27,541           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-11-03T16:45:27,541           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,541           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,541           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-11-03T16:45:27,541           to the `packages` configuration field.

2023-11-03T16:45:27,542           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,542           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,542           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,542           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,542           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,543           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-11-03T16:45:27,544           already explicitly excluding 'moleculekit.tmalign.include' via
2023-11-03T16:45:27,544           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,544           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,544           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,544           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,545           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,545           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,545                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,546                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,546                 directory, all directories are treated like packages.
2023-11-03T16:45:27,546           ********************************************************************************

2023-11-03T16:45:27,546   !!
2023-11-03T16:45:27,546     check.warn(importable)
2023-11-03T16:45:27,547   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-11-03T16:45:27,547   !!

2023-11-03T16:45:27,547           ********************************************************************************
2023-11-03T16:45:27,547           ############################
2023-11-03T16:45:27,547           # Package would be ignored #
2023-11-03T16:45:27,547           ############################
2023-11-03T16:45:27,548           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-11-03T16:45:27,548           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,548           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,548           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-11-03T16:45:27,548           to the `packages` configuration field.

2023-11-03T16:45:27,549           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,549           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,549           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,549           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,550           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,551           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-11-03T16:45:27,551           already explicitly excluding 'moleculekit.tmalign.src' via
2023-11-03T16:45:27,551           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,551           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,551           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,552           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,552           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,553           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,553                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,553                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,553                 directory, all directories are treated like packages.
2023-11-03T16:45:27,553           ********************************************************************************

2023-11-03T16:45:27,554   !!
2023-11-03T16:45:27,554     check.warn(importable)
2023-11-03T16:45:27,554   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-11-03T16:45:27,554   !!

2023-11-03T16:45:27,554           ********************************************************************************
2023-11-03T16:45:27,554           ############################
2023-11-03T16:45:27,554           # Package would be ignored #
2023-11-03T16:45:27,555           ############################
2023-11-03T16:45:27,555           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-11-03T16:45:27,555           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,555           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,555           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-11-03T16:45:27,555           to the `packages` configuration field.

2023-11-03T16:45:27,556           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,556           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,556           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,556           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,557           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,557           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-11-03T16:45:27,557           already explicitly excluding 'moleculekit.wrapping' via
2023-11-03T16:45:27,557           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,557           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,557           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,558           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,558           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,558           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,558                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,558                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,559                 directory, all directories are treated like packages.
2023-11-03T16:45:27,559           ********************************************************************************

2023-11-03T16:45:27,559   !!
2023-11-03T16:45:27,559     check.warn(importable)
2023-11-03T16:45:27,559   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-11-03T16:45:27,559   !!

2023-11-03T16:45:27,560           ********************************************************************************
2023-11-03T16:45:27,560           ############################
2023-11-03T16:45:27,560           # Package would be ignored #
2023-11-03T16:45:27,560           ############################
2023-11-03T16:45:27,560           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-11-03T16:45:27,560           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,561           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,561           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-11-03T16:45:27,561           to the `packages` configuration field.

2023-11-03T16:45:27,561           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,561           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,561           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,562           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,562           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,562           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-11-03T16:45:27,562           already explicitly excluding 'moleculekit.xtc_utils' via
2023-11-03T16:45:27,562           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,562           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,563           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,563           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,563           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,563           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,564                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,564                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,564                 directory, all directories are treated like packages.
2023-11-03T16:45:27,564           ********************************************************************************

2023-11-03T16:45:27,564   !!
2023-11-03T16:45:27,564     check.warn(importable)
2023-11-03T16:45:27,564   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-11-03T16:45:27,565   !!

2023-11-03T16:45:27,565           ********************************************************************************
2023-11-03T16:45:27,565           ############################
2023-11-03T16:45:27,565           # Package would be ignored #
2023-11-03T16:45:27,565           ############################
2023-11-03T16:45:27,565           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-11-03T16:45:27,565           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,566           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,566           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-11-03T16:45:27,566           to the `packages` configuration field.

2023-11-03T16:45:27,566           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,566           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,566           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,567           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,567           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,567           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-11-03T16:45:27,567           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-11-03T16:45:27,567           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,567           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,567           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,568           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,568           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,568           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,568                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,569                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,569                 directory, all directories are treated like packages.
2023-11-03T16:45:27,569           ********************************************************************************

2023-11-03T16:45:27,569   !!
2023-11-03T16:45:27,569     check.warn(importable)
2023-11-03T16:45:27,569   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-11-03T16:45:27,570   !!

2023-11-03T16:45:27,570           ********************************************************************************
2023-11-03T16:45:27,570           ############################
2023-11-03T16:45:27,570           # Package would be ignored #
2023-11-03T16:45:27,570           ############################
2023-11-03T16:45:27,570           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-11-03T16:45:27,571           but it is absent from setuptools' `packages` configuration.

2023-11-03T16:45:27,571           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-03T16:45:27,571           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-11-03T16:45:27,571           to the `packages` configuration field.

2023-11-03T16:45:27,571           Alternatively, you can also rely on setuptools' discovery methods
2023-11-03T16:45:27,572           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-03T16:45:27,572           instead of `find_packages(...)`/`find:`).

2023-11-03T16:45:27,572           You can read more about "package discovery" on setuptools documentation page:

2023-11-03T16:45:27,572           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-03T16:45:27,573           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-11-03T16:45:27,573           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-11-03T16:45:27,573           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-03T16:45:27,573           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-03T16:45:27,573           combination with a more fine grained `package-data` configuration.

2023-11-03T16:45:27,574           You can read more about "package data files" on setuptools documentation page:

2023-11-03T16:45:27,574           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-03T16:45:27,574           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-03T16:45:27,574                 even if it does not contain any `.py` files.
2023-11-03T16:45:27,574                 On the other hand, currently there is no concept of package data
2023-11-03T16:45:27,575                 directory, all directories are treated like packages.
2023-11-03T16:45:27,575           ********************************************************************************

2023-11-03T16:45:27,575   !!
2023-11-03T16:45:27,575     check.warn(importable)
2023-11-03T16:45:27,575   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:27,575   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:27,576   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-03T16:45:27,576   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-03T16:45:27,576   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-03T16:45:27,576   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-03T16:45:27,576   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-03T16:45:27,598   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-03T16:45:27,601   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-03T16:45:27,602   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-03T16:45:27,644   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-03T16:45:27,646   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-03T16:45:27,647   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-03T16:45:27,686   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-03T16:45:27,688   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-03T16:45:27,688   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-03T16:45:27,691   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-03T16:45:27,693   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-03T16:45:27,921   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-11-03T16:45:27,922   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-11-03T16:45:27,924   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-11-03T16:45:27,924   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,925   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,927   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,929   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,931   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,933   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,935   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,936   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,939   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,940   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,942   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,944   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,946   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,948   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,950   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,953   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,955   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,957   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,959   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,961   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,963   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,965   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,967   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,969   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,971   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,973   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,975   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,977   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,979   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,981   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,983   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,985   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,987   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,989   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,991   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,993   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,996   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:27,997   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,000   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,001   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,004   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,006   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,008   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,010   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,012   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,014   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,016   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,018   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,020   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,022   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,024   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,026   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,028   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,030   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,032   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,034   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,036   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,038   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,040   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,042   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,044   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,046   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,048   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,057   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,059   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,061   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,064   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,066   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,069   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,072   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,074   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,076   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,078   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,079   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,082   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,083   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,086   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,088   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,090   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,092   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,094   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,096   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,098   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,100   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,102   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,104   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,106   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,108   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,110   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,112   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,114   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,116   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,118   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,120   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,122   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,124   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,126   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,128   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,130   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,132   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,134   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,136   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,139   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,141   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,143   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,145   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,147   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,149   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,151   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,153   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,155   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,157   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,159   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,161   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,164   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,166   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,168   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,170   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,172   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,175   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,177   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,179   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,181   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,184   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,186   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,189   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,192   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,195   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,198   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,445   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,450   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,454   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,458   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,462   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,468   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,472   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,476   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,480   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,484   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,487   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,491   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,495   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,498   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,501   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,504   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,507   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,510   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,513   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,517   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,520   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,523   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,526   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,529   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,532   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,535   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,538   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,542   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,544   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,547   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,550   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,553   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,556   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,559   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,561   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,564   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,566   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,569   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,571   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,574   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,577   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,580   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,582   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,585   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,588   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,591   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,596   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-03T16:45:28,598   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-03T16:45:28,599   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-03T16:45:28,626   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-03T16:45:28,628   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-03T16:45:28,630   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-11-03T16:45:28,631   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-11-03T16:45:28,633   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-11-03T16:45:28,634   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-11-03T16:45:28,641   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-03T16:45:28,641   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-03T16:45:28,664   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-03T16:45:28,666   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-03T16:45:28,668   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-03T16:45:28,688   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-03T16:45:28,690   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-03T16:45:28,691   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-03T16:45:28,692   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-03T16:45:28,695   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-03T16:45:28,697   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-03T16:45:28,699   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-03T16:45:28,700   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-03T16:45:28,704   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-03T16:45:28,706   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-03T16:45:28,708   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-03T16:45:28,709   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-03T16:45:28,737   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-03T16:45:28,739   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-03T16:45:28,740   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-03T16:45:28,768   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-03T16:45:28,770   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-03T16:45:28,771   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-03T16:45:28,791   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-03T16:45:28,794   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-03T16:45:28,794   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-03T16:45:28,818   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-03T16:45:28,829   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-11-03T16:45:28,830   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.6'
2023-11-03T16:45:28,830   running build_ext
2023-11-03T16:45:28,841   building 'moleculekit.interactions.hbonds' extension
2023-11-03T16:45:28,842   creating build/temp.linux-armv7l-cpython-39
2023-11-03T16:45:28,843   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-11-03T16:45:28,843   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-03T16:45:28,844   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-03T16:45:28,845   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-11-03T16:45:29,113   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:45:29,114                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:45:29,114                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:45:29,114                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-11-03T16:45:29,114   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:45:29,114      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:45:29,114         |  ^~~~~~~
2023-11-03T16:45:55,346   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:45:56,108   building 'moleculekit.interactions.pipi' extension
2023-11-03T16:45:56,108   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-03T16:45:56,109   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-11-03T16:45:56,393   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:45:56,394                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:45:56,394                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:45:56,394                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-11-03T16:45:56,394   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:45:56,394      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:45:56,394         |  ^~~~~~~
2023-11-03T16:46:24,519   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:46:24,834   building 'moleculekit.interactions.cationpi' extension
2023-11-03T16:46:24,835   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-03T16:46:24,836   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-11-03T16:46:25,070   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:46:25,070                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:46:25,070                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:46:25,071                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-11-03T16:46:25,071   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:46:25,071      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:46:25,071         |  ^~~~~~~
2023-11-03T16:46:53,009   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:46:53,326   building 'moleculekit.interactions.sigmahole' extension
2023-11-03T16:46:53,327   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-03T16:46:53,328   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-11-03T16:46:53,563   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:46:53,563                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:46:53,563                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:46:53,563                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-11-03T16:46:53,563   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:46:53,563      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:46:53,564         |  ^~~~~~~
2023-11-03T16:47:20,823   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:47:21,139   building 'moleculekit.wrapping' extension
2023-11-03T16:47:21,140   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-03T16:47:21,140   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-11-03T16:47:21,381   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:47:21,381                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:47:21,381                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:47:21,381                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-11-03T16:47:21,382   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:47:21,382      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:47:21,382         |  ^~~~~~~
2023-11-03T16:47:45,211   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:47:45,424   building 'moleculekit.bondguesser_utils' extension
2023-11-03T16:47:45,425   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-03T16:47:45,426   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-11-03T16:47:45,658   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:47:45,658                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:47:45,658                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:47:45,658                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-11-03T16:47:45,658   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:47:45,659      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:47:45,659         |  ^~~~~~~
2023-11-03T16:47:47,205   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-11-03T16:47:47,206   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-03T16:47:47,206   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-11-03T16:47:47,206         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-11-03T16:47:47,206   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-03T16:47:47,206   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-11-03T16:47:47,206         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-11-03T16:47:47,207   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-03T16:47:47,207   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-11-03T16:47:47,207         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-11-03T16:47:47,207   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,207   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T16:47:47,207         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,207   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,208   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T16:47:47,208         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,208   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,208   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,208         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,208   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,209   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T16:47:47,209         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,209   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,209   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T16:47:47,209         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,209   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,209   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T16:47:47,209         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,210   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,210   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,210         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,210   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,210   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T16:47:47,210         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,211   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,211   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,211         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,211   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,211   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T16:47:47,211         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,211   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,212   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,212         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,212   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,212   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,212         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,212   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,213   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T16:47:47,213         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,213   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,213   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T16:47:47,213         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,213   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,213   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,214         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,214   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,214   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-03T16:47:47,214         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,214   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,214   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,214         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,215   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,215   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-03T16:47:47,215         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,215   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,215   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,215         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,215   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-03T16:47:47,216   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-03T16:47:47,216         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,234   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-11-03T16:47:47,234   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T16:47:47,234   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-11-03T16:47:47,235         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-11-03T16:47:47,235   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T16:47:47,235   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-11-03T16:47:47,235         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-11-03T16:48:10,365   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:48:10,663   building 'moleculekit.atomselect_utils' extension
2023-11-03T16:48:10,664   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-03T16:48:10,665   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-11-03T16:48:10,899   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:48:10,899                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:48:10,899                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:48:10,900                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-11-03T16:48:10,900   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:48:10,900      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:48:10,900         |  ^~~~~~~
2023-11-03T16:48:12,630   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-11-03T16:48:12,630   moleculekit/atomselect_utils/atomselect_utils.cpp:23737:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T16:48:12,630   23737 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-11-03T16:48:12,630         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-11-03T16:48:12,635   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-11-03T16:48:12,635   moleculekit/atomselect_utils/atomselect_utils.cpp:23989:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T16:48:12,635   23989 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-11-03T16:48:12,635         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T16:48:12,640   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-11-03T16:48:12,640   moleculekit/atomselect_utils/atomselect_utils.cpp:24256:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-03T16:48:12,640   24256 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-11-03T16:48:12,641         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T16:48:43,298   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:48:43,620   building 'moleculekit.distance_utils' extension
2023-11-03T16:48:43,621   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-03T16:48:43,622   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-11-03T16:48:43,853   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:48:43,854                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:48:43,854                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:48:43,854                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-11-03T16:48:43,854   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:48:43,854      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:48:43,854         |  ^~~~~~~
2023-11-03T16:49:18,804   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:49:19,136   building 'moleculekit.occupancy_utils' extension
2023-11-03T16:49:19,137   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-03T16:49:19,138   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-11-03T16:49:19,375   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:49:19,375                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:49:19,376                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:49:19,376                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-11-03T16:49:19,376   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:49:19,376      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:49:19,376         |  ^~~~~~~
2023-11-03T16:49:42,357   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:49:42,571   building 'moleculekit.xtc' extension
2023-11-03T16:49:42,572   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-03T16:49:42,573   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-03T16:49:42,574   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-11-03T16:49:42,814   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,815      66 |  "OK",
2023-11-03T16:49:42,815         |  ^~~~
2023-11-03T16:49:42,815   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,815      67 |  "Header",
2023-11-03T16:49:42,815         |  ^~~~~~~~
2023-11-03T16:49:42,816   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,816      68 |  "String",
2023-11-03T16:49:42,816         |  ^~~~~~~~
2023-11-03T16:49:42,816   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,816      69 |  "Double",
2023-11-03T16:49:42,816         |  ^~~~~~~~
2023-11-03T16:49:42,817   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,817      70 |  "Integer",
2023-11-03T16:49:42,817         |  ^~~~~~~~~
2023-11-03T16:49:42,817   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,817      71 |  "Float",
2023-11-03T16:49:42,817         |  ^~~~~~~
2023-11-03T16:49:42,818   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,818      72 |  "Unsigned integer",
2023-11-03T16:49:42,818         |  ^~~~~~~~~~~~~~~~~~
2023-11-03T16:49:42,818   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,818      73 |  "Compressed 3D coordinate",
2023-11-03T16:49:42,818         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:49:42,819   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,819      74 |  "Closing file",
2023-11-03T16:49:42,819         |  ^~~~~~~~~~~~~~
2023-11-03T16:49:42,819   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,819      75 |  "Magic number",
2023-11-03T16:49:42,819         |  ^~~~~~~~~~~~~~
2023-11-03T16:49:42,820   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,820      76 |  "Not enough memory",
2023-11-03T16:49:42,820         |  ^~~~~~~~~~~~~~~~~~~
2023-11-03T16:49:42,820   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,820      77 |  "End of file",
2023-11-03T16:49:42,820         |  ^~~~~~~~~~~~~
2023-11-03T16:49:42,821   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-03T16:49:42,821      78 |  "File not found"
2023-11-03T16:49:42,821         |  ^~~~~~~~~~~~~~~~
2023-11-03T16:49:42,829   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-11-03T16:49:42,829   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,829     459 |     while (size >= num && num_of_bits < 32)
2023-11-03T16:49:42,830         |            ~~~~~^~~~~~
2023-11-03T16:49:42,831   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-11-03T16:49:42,831   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,831     505 |     while (bytes[num_of_bytes] >= num)
2023-11-03T16:49:42,831         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-11-03T16:49:42,834   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-11-03T16:49:42,834   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,834     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-11-03T16:49:42,834         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-11-03T16:49:42,835   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,835     616 |   for (i = 0; i < num_of_bytes; i++)
2023-11-03T16:49:42,835         |               ~~^~~~~~~~~~~~~~
2023-11-03T16:49:42,835   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,836     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-11-03T16:49:42,836         |               ~~^~~~~~~~~~~~~~~~
2023-11-03T16:49:42,837   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-11-03T16:49:42,837   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,837     664 |   if (lastbits < num_of_bits)
2023-11-03T16:49:42,838         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-11-03T16:49:42,841   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-11-03T16:49:42,842   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,842     785 |  if(size3>xfp->buf1size)
2023-11-03T16:49:42,842         |     ~~~~~^~~~~~~~~~~~~~
2023-11-03T16:49:42,844   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,844     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T16:49:42,845         |                   ^
2023-11-03T16:49:42,848   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,848     932 |     if(countmjh >= size3 ) { return -1; }
2023-11-03T16:49:42,849         |        ~~~~~~~~~^~~~~~~~
2023-11-03T16:49:42,849   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,849     935 |     if(countmjh >= size3 ) { return -1; }
2023-11-03T16:49:42,849         |        ~~~~~~~~~^~~~~~~~
2023-11-03T16:49:42,849   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,849     938 |     if(countmjh >= size3 ) { return -1; }
2023-11-03T16:49:42,849         |        ~~~~~~~~~^~~~~~~~
2023-11-03T16:49:42,850   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,850     945 |     if(countmjh >= size3 ) { return -1; }
2023-11-03T16:49:42,850         |        ~~~~~~~~~^~~~~~~~
2023-11-03T16:49:42,850   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,850     948 |     if(countmjh >= size3 ) { return -1; }
2023-11-03T16:49:42,850         |        ~~~~~~~~~^~~~~~~~
2023-11-03T16:49:42,851   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,851     951 |     if(countmjh >= size3 ) { return -1; }
2023-11-03T16:49:42,851         |        ~~~~~~~~~^~~~~~~~
2023-11-03T16:49:42,851   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-11-03T16:49:42,851     756 |  int smallidx,  minidx, maxidx;
2023-11-03T16:49:42,851         |                 ^~~~~~
2023-11-03T16:49:42,851   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-11-03T16:49:42,852     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-11-03T16:49:42,852         |                         ^~~~~~
2023-11-03T16:49:42,852   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-11-03T16:49:42,852     763 |  int errval=1;
2023-11-03T16:49:42,852         |      ^~~~~~
2023-11-03T16:49:42,853   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-11-03T16:49:42,854   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,854    1011 |  if(size3>xfp->buf1size)
2023-11-03T16:49:42,854         |     ~~~~~^~~~~~~~~~~~~~
2023-11-03T16:49:42,855   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,856    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-11-03T16:49:42,856         |                     ~~~~~~~~^~~~~~~
2023-11-03T16:49:42,856   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,856    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-11-03T16:49:42,856         |                    ~~~~~~~~^~~~~~~
2023-11-03T16:49:42,857   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,857    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-11-03T16:49:42,857         |                    ~~~~~~~~^~~~~~~
2023-11-03T16:49:42,858   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,859    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-11-03T16:49:42,859         |                  ^
2023-11-03T16:49:42,859   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,859    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T16:49:42,859         |                   ^
2023-11-03T16:49:42,863   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,863    1275 |  if(tmp==(unsigned int)buf2[0])
2023-11-03T16:49:42,863         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:49:42,863   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-11-03T16:49:42,863    1001 |  int errval;
2023-11-03T16:49:42,863         |      ^~~~~~
2023-11-03T16:49:42,866   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-11-03T16:49:42,866   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,866    1316 |  if(size3>xfp->buf1size)
2023-11-03T16:49:42,866         |     ~~~~~^~~~~~~~~~~~~~
2023-11-03T16:49:42,868   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,868    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T16:49:42,868         |                   ^
2023-11-03T16:49:42,871   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-11-03T16:49:42,871    1289 |  int smallidx,  maxidx, minidx;
2023-11-03T16:49:42,871         |                         ^~~~~~
2023-11-03T16:49:42,871   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-11-03T16:49:42,871    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-11-03T16:49:42,871         |                         ^~~~~~
2023-11-03T16:49:42,871   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-11-03T16:49:42,872    1297 |  int errval=1;
2023-11-03T16:49:42,872         |      ^~~~~~
2023-11-03T16:49:42,873   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-11-03T16:49:42,873   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,873    1513 |  if(size3>xfp->buf1size) {
2023-11-03T16:49:42,873         |     ~~~~~^~~~~~~~~~~~~~
2023-11-03T16:49:42,877   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,877    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-11-03T16:49:42,878         |                  ^
2023-11-03T16:49:42,878   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-03T16:49:42,878    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-03T16:49:42,878         |                   ^
2023-11-03T16:49:42,881   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-03T16:49:42,882    1743 |  if(tmp==(unsigned int)buf2[0])
2023-11-03T16:49:42,882         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-11-03T16:49:42,882   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-11-03T16:49:42,882    1504 |  int errval=1;
2023-11-03T16:49:42,882         |      ^~~~~~
2023-11-03T16:49:45,110   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-11-03T16:49:45,364   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-11-03T16:49:45,928   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-11-03T16:49:45,929   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-11-03T16:49:45,929     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-11-03T16:49:45,929         |      ^~~
2023-11-03T16:49:45,936   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-11-03T16:49:45,936   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-11-03T16:49:45,936     418 |  int nf3 = nframes * 3;
2023-11-03T16:49:45,937         |      ^~~
2023-11-03T16:49:45,942   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-11-03T16:49:45,942   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-11-03T16:49:45,942     491 |  int reading_index = 0;
2023-11-03T16:49:45,942         |      ^~~~~~~~~~~~~
2023-11-03T16:49:45,942   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-11-03T16:49:45,942     492 |  int writing_index = 0;
2023-11-03T16:49:45,943         |      ^~~~~~~~~~~~~
2023-11-03T16:49:46,697   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-11-03T16:49:46,931   In file included from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-03T16:49:46,931                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-03T16:49:46,931                    from /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-03T16:49:46,931                    from moleculekit/xtc_utils/xtc.cpp:1234:
2023-11-03T16:49:46,931   /tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-03T16:49:46,931      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-03T16:49:46,931         |  ^~~~~~~
2023-11-03T16:50:07,000   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:50:07,326   building 'moleculekit.tmalign' extension
2023-11-03T16:50:07,327   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-03T16:50:07,328   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-11-03T16:50:07,329   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-11-03T16:50:36,698   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-s1zammkr/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-11-03T16:50:55,101   In file included from /usr/include/c++/10/vector:72,
2023-11-03T16:50:55,102                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-11-03T16:50:55,102   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-11-03T16:50:55,102   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-11-03T16:50:55,102     426 |       vector<_Tp, _Alloc>::
2023-11-03T16:50:55,102         |       ^~~~~~~~~~~~~~~~~~~
2023-11-03T16:50:55,677   In file included from /usr/include/c++/10/vector:67,
2023-11-03T16:50:55,678                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-11-03T16:50:55,678   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-11-03T16:50:55,678   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-03T16:50:55,678    1198 |    _M_realloc_insert(end(), __x);
2023-11-03T16:50:55,678         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T16:50:55,679   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-03T16:50:55,679    1198 |    _M_realloc_insert(end(), __x);
2023-11-03T16:50:55,679         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T16:50:55,679   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-03T16:50:55,680    1198 |    _M_realloc_insert(end(), __x);
2023-11-03T16:50:55,680         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-03T16:50:58,122   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-11-03T16:50:58,555   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-11-03T16:50:58,555   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.6'
2023-11-03T16:50:58,556   installing to build/bdist.linux-armv7l/wheel
2023-11-03T16:50:58,556   running install
2023-11-03T16:50:58,581   running install_lib
2023-11-03T16:50:58,587   creating build/bdist.linux-armv7l
2023-11-03T16:50:58,588   creating build/bdist.linux-armv7l/wheel
2023-11-03T16:50:58,590   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,677   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-03T16:50:58,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-03T16:50:58,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-03T16:50:58,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,706   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-11-03T16:50:58,707   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-03T16:50:58,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-03T16:50:58,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-03T16:50:58,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-11-03T16:50:58,715   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T16:50:58,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T16:50:58,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T16:50:58,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T16:50:58,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-03T16:50:58,725   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T16:50:58,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T16:50:58,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T16:50:58,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T16:50:58,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-03T16:50:58,737   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-03T16:50:58,754   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T16:50:58,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T16:50:58,758   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T16:50:58,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T16:50:58,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-03T16:50:58,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:58,783   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-03T16:50:58,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-03T16:50:58,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-03T16:50:58,809   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:58,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:58,839   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-03T16:50:58,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-03T16:50:58,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-03T16:50:58,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:58,888   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-03T16:50:58,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-03T16:50:58,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-03T16:50:58,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:58,938   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-03T16:50:58,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-03T16:50:58,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-03T16:50:58,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:58,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:58,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-03T16:50:59,001   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-03T16:50:59,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-03T16:50:59,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-03T16:50:59,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,038   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T16:50:59,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T16:50:59,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T16:50:59,065   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T16:50:59,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T16:50:59,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T16:50:59,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-03T16:50:59,073   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T16:50:59,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T16:50:59,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T16:50:59,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-03T16:50:59,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-03T16:50:59,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,089   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-03T16:50:59,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-03T16:50:59,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-03T16:50:59,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,125   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T16:50:59,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T16:50:59,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T16:50:59,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-03T16:50:59,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,167   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T16:50:59,168   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-11-03T16:50:59,172   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,240   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,434   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-03T16:50:59,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T16:50:59,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T16:50:59,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-03T16:50:59,672   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-11-03T16:50:59,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-11-03T16:50:59,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,736   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-03T16:50:59,773   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T16:50:59,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T16:50:59,777   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-11-03T16:50:59,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-11-03T16:50:59,781   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-11-03T16:50:59,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-11-03T16:50:59,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T16:50:59,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-03T16:50:59,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,847   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-03T16:50:59,878   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-03T16:50:59,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-03T16:50:59,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-03T16:50:59,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,885   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-03T16:50:59,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-03T16:50:59,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-03T16:50:59,917   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T16:50:59,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T16:50:59,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T16:50:59,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T16:50:59,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-03T16:50:59,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-03T16:50:59,929   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-03T16:50:59,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-03T16:50:59,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-03T16:50:59,958   running install_egg_info
2023-11-03T16:50:59,964   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.6-py3.9.egg-info
2023-11-03T16:50:59,977   running install_scripts
2023-11-03T16:51:00,025   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.6.dist-info/WHEEL
2023-11-03T16:51:00,028   creating '/tmp/pip-wheel-qw063ipd/.tmp-f16cp1xr/moleculekit-1.8.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-03T16:51:00,031   adding 'moleculekit/__init__.py'
2023-11-03T16:51:00,032   adding 'moleculekit/_version.py'
2023-11-03T16:51:00,034   adding 'moleculekit/align.py'
2023-11-03T16:51:00,352   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:00,364   adding 'moleculekit/bondguesser.py'
2023-11-03T16:51:00,609   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:00,617   adding 'moleculekit/config.py'
2023-11-03T16:51:00,619   adding 'moleculekit/dihedral.py'
2023-11-03T16:51:00,620   adding 'moleculekit/distance.py'
2023-11-03T16:51:00,940   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:00,952   adding 'moleculekit/home.py'
2023-11-03T16:51:00,953   adding 'moleculekit/logging.ini'
2023-11-03T16:51:00,967   adding 'moleculekit/molecule.py'
2023-11-03T16:51:01,194   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:01,203   adding 'moleculekit/opm.py'
2023-11-03T16:51:01,205   adding 'moleculekit/periodictable.py'
2023-11-03T16:51:01,207   adding 'moleculekit/pymolgraphics.py'
2023-11-03T16:51:01,208   adding 'moleculekit/rcsb.py'
2023-11-03T16:51:01,209   adding 'moleculekit/rdkitintegration.py'
2023-11-03T16:51:01,221   adding 'moleculekit/readers.py'
2023-11-03T16:51:01,827   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:01,851   adding 'moleculekit/util.py'
2023-11-03T16:51:01,852   adding 'moleculekit/version.py'
2023-11-03T16:51:01,854   adding 'moleculekit/viewer.py'
2023-11-03T16:51:01,855   adding 'moleculekit/vmd_wrapper'
2023-11-03T16:51:01,857   adding 'moleculekit/vmdgraphics.py'
2023-11-03T16:51:01,859   adding 'moleculekit/vmdviewer.py'
2023-11-03T16:51:02,093   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:02,105   adding 'moleculekit/writers.py'
2023-11-03T16:51:02,374   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:02,383   adding 'moleculekit/atomselect/__init__.py'
2023-11-03T16:51:02,385   adding 'moleculekit/atomselect/analyze.py'
2023-11-03T16:51:02,387   adding 'moleculekit/atomselect/atomselect.py'
2023-11-03T16:51:02,389   adding 'moleculekit/atomselect/languageparser.py'
2023-11-03T16:51:02,494   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-11-03T16:51:02,505   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-11-03T16:51:02,597   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-11-03T16:51:02,606   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-11-03T16:51:02,707   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-11-03T16:51:02,717   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-11-03T16:51:02,719   adding 'moleculekit/interactions/__init__.py'
2023-11-03T16:51:03,004   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:03,275   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:03,287   adding 'moleculekit/interactions/interactions.py'
2023-11-03T16:51:03,569   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:03,858   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-11-03T16:51:03,960   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-11-03T16:51:03,969   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-11-03T16:51:04,060   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-11-03T16:51:04,069   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-11-03T16:51:04,161   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-11-03T16:51:04,170   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-11-03T16:51:04,263   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-11-03T16:51:04,272   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-11-03T16:51:04,359   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-11-03T16:51:04,368   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-11-03T16:51:04,369   adding 'moleculekit/pdbx/__init__.py'
2023-11-03T16:51:04,373   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-11-03T16:51:04,376   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-11-03T16:51:04,378   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-11-03T16:51:04,379   adding 'moleculekit/pdbx/reader/__init__.py'
2023-11-03T16:51:04,381   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-11-03T16:51:04,383   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-11-03T16:51:04,384   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-11-03T16:51:04,385   adding 'moleculekit/pdbx/tests/__init__.py'
2023-11-03T16:51:04,387   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-11-03T16:51:04,388   adding 'moleculekit/pdbx/writer/__init__.py'
2023-11-03T16:51:04,390   adding 'moleculekit/ply/__init__.py'
2023-11-03T16:51:04,394   adding 'moleculekit/ply/lex.py'
2023-11-03T16:51:04,406   adding 'moleculekit/ply/yacc.py'
2023-11-03T16:51:04,409   adding 'moleculekit/projections/__init__.py'
2023-11-03T16:51:04,410   adding 'moleculekit/projections/metriccoordinate.py'
2023-11-03T16:51:04,414   adding 'moleculekit/projections/metricdihedral.py'
2023-11-03T16:51:04,418   adding 'moleculekit/projections/metricdistance.py'
2023-11-03T16:51:04,420   adding 'moleculekit/projections/metricfluctuation.py'
2023-11-03T16:51:04,422   adding 'moleculekit/projections/metricgyration.py'
2023-11-03T16:51:04,425   adding 'moleculekit/projections/metricplumed2.py'
2023-11-03T16:51:04,427   adding 'moleculekit/projections/metricrmsd.py'
2023-11-03T16:51:04,429   adding 'moleculekit/projections/metricsasa.py'
2023-11-03T16:51:04,431   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-11-03T16:51:04,433   adding 'moleculekit/projections/metricshell.py'
2023-11-03T16:51:04,435   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-11-03T16:51:04,436   adding 'moleculekit/projections/metrictmscore.py'
2023-11-03T16:51:04,438   adding 'moleculekit/projections/projection.py'
2023-11-03T16:51:04,439   adding 'moleculekit/projections/util.py'
2023-11-03T16:51:04,441   adding 'moleculekit/share/ALA.cif'
2023-11-03T16:51:04,442   adding 'moleculekit/share/backbone.cif'
2023-11-03T16:51:05,748   adding 'moleculekit/share/opm_sequences.json'
2023-11-03T16:51:05,835   adding 'moleculekit/share/atomselect/atomselect.json'
2023-11-03T16:51:05,839   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-11-03T16:51:05,841   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-11-03T16:51:05,842   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-11-03T16:51:05,843   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-11-03T16:51:05,844   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-11-03T16:51:05,845   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-11-03T16:51:05,846   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-11-03T16:51:05,848   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-11-03T16:51:05,849   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-11-03T16:51:05,850   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-11-03T16:51:05,851   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-11-03T16:51:05,852   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-11-03T16:51:05,854   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-11-03T16:51:05,855   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-11-03T16:51:05,856   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-11-03T16:51:05,857   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-11-03T16:51:05,859   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-11-03T16:51:05,860   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-11-03T16:51:05,861   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-11-03T16:51:05,862   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-11-03T16:51:05,863   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-11-03T16:51:05,865   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-11-03T16:51:05,866   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-11-03T16:51:05,867   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-11-03T16:51:05,868   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-11-03T16:51:05,869   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-11-03T16:51:05,871   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-11-03T16:51:05,872   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-11-03T16:51:05,873   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-11-03T16:51:05,874   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-11-03T16:51:05,876   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-11-03T16:51:05,877   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-11-03T16:51:05,878   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-11-03T16:51:05,879   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-11-03T16:51:05,880   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-11-03T16:51:05,881   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-11-03T16:51:05,882   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-11-03T16:51:05,884   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-11-03T16:51:05,885   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-11-03T16:51:05,886   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-11-03T16:51:05,887   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-11-03T16:51:05,888   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-11-03T16:51:05,890   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-11-03T16:51:05,891   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-11-03T16:51:05,892   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-11-03T16:51:05,893   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-11-03T16:51:05,894   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-11-03T16:51:05,896   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-11-03T16:51:05,897   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-11-03T16:51:05,898   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-11-03T16:51:05,899   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-11-03T16:51:05,900   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-11-03T16:51:05,902   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-11-03T16:51:05,903   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-11-03T16:51:05,904   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-11-03T16:51:05,905   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-11-03T16:51:05,906   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-11-03T16:51:05,908   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-11-03T16:51:05,909   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-11-03T16:51:05,910   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-11-03T16:51:05,911   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-11-03T16:51:05,912   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-11-03T16:51:05,914   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-11-03T16:51:05,915   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-11-03T16:51:05,917   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-11-03T16:51:05,918   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-11-03T16:51:05,920   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-11-03T16:51:05,921   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-11-03T16:51:05,922   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-11-03T16:51:05,924   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-11-03T16:51:05,925   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-11-03T16:51:05,927   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-11-03T16:51:05,928   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-11-03T16:51:05,930   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-11-03T16:51:05,931   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-11-03T16:51:05,933   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-11-03T16:51:05,934   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-11-03T16:51:05,936   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-11-03T16:51:05,937   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-11-03T16:51:05,939   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-11-03T16:51:05,940   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-11-03T16:51:05,942   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-11-03T16:51:05,943   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-11-03T16:51:05,945   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-11-03T16:51:05,946   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-11-03T16:51:05,948   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-11-03T16:51:05,949   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-11-03T16:51:05,951   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-11-03T16:51:05,952   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-11-03T16:51:05,954   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-11-03T16:51:05,955   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-11-03T16:51:05,957   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-11-03T16:51:05,959   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-11-03T16:51:05,960   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-11-03T16:51:05,962   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-11-03T16:51:05,963   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-11-03T16:51:05,965   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-11-03T16:51:05,966   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-11-03T16:51:05,968   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-11-03T16:51:05,969   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-11-03T16:51:05,971   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-11-03T16:51:05,972   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-11-03T16:51:05,974   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-11-03T16:51:05,975   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-11-03T16:51:05,977   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-11-03T16:51:05,978   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-11-03T16:51:05,980   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-11-03T16:51:05,981   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-11-03T16:51:05,983   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-11-03T16:51:05,984   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-11-03T16:51:05,986   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-11-03T16:51:05,987   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-11-03T16:51:05,989   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-11-03T16:51:05,990   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-11-03T16:51:05,992   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-11-03T16:51:05,993   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-11-03T16:51:05,995   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-11-03T16:51:05,996   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-11-03T16:51:05,998   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-11-03T16:51:05,999   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-11-03T16:51:06,001   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-11-03T16:51:06,002   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-11-03T16:51:06,004   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-11-03T16:51:06,005   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-11-03T16:51:06,006   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-11-03T16:51:06,007   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-11-03T16:51:06,009   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-11-03T16:51:06,010   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-11-03T16:51:06,011   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-11-03T16:51:06,012   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-11-03T16:51:06,014   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-11-03T16:51:06,015   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-11-03T16:51:06,016   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-11-03T16:51:06,017   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-11-03T16:51:06,018   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-11-03T16:51:06,020   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-11-03T16:51:06,021   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-11-03T16:51:06,022   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-11-03T16:51:06,023   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-11-03T16:51:06,025   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-11-03T16:51:06,026   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-11-03T16:51:06,027   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-11-03T16:51:06,028   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-11-03T16:51:06,029   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-11-03T16:51:06,030   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-11-03T16:51:06,032   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-11-03T16:51:06,033   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-11-03T16:51:06,034   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-11-03T16:51:06,035   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-11-03T16:51:06,036   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-11-03T16:51:06,038   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-11-03T16:51:06,039   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-11-03T16:51:06,040   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-11-03T16:51:06,041   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-11-03T16:51:06,043   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-11-03T16:51:06,044   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-11-03T16:51:06,045   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-11-03T16:51:06,046   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-11-03T16:51:06,048   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-11-03T16:51:06,049   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-11-03T16:51:06,050   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-11-03T16:51:06,051   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-11-03T16:51:06,053   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-11-03T16:51:06,054   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-11-03T16:51:06,055   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-11-03T16:51:06,056   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-11-03T16:51:06,057   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-11-03T16:51:06,059   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-11-03T16:51:06,060   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-11-03T16:51:06,061   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-11-03T16:51:06,062   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-11-03T16:51:06,063   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-11-03T16:51:06,065   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-11-03T16:51:06,066   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-11-03T16:51:06,067   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-11-03T16:51:06,069   adding 'moleculekit/smallmol/__init__.py'
2023-11-03T16:51:06,074   adding 'moleculekit/smallmol/smallmol.py'
2023-11-03T16:51:06,077   adding 'moleculekit/smallmol/smallmollib.py'
2023-11-03T16:51:06,078   adding 'moleculekit/smallmol/test_smallmol.py'
2023-11-03T16:51:06,080   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-11-03T16:51:06,082   adding 'moleculekit/smallmol/util.py'
2023-11-03T16:51:06,084   adding 'moleculekit/smallmol/tools/__init__.py'
2023-11-03T16:51:06,085   adding 'moleculekit/smallmol/tools/clustering.py'
2023-11-03T16:51:06,087   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-11-03T16:51:06,088   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-11-03T16:51:06,179   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-11-03T16:51:06,188   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-11-03T16:51:06,189   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-11-03T16:51:06,191   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-11-03T16:51:06,208   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-11-03T16:51:06,211   adding 'moleculekit/tools/__init__.py'
2023-11-03T16:51:06,213   adding 'moleculekit/tools/atomtyper.py'
2023-11-03T16:51:06,216   adding 'moleculekit/tools/autosegment.py'
2023-11-03T16:51:06,218   adding 'moleculekit/tools/crystalpacking.py'
2023-11-03T16:51:06,221   adding 'moleculekit/tools/detect.py'
2023-11-03T16:51:06,223   adding 'moleculekit/tools/docking.py'
2023-11-03T16:51:06,225   adding 'moleculekit/tools/graphalignment.py'
2023-11-03T16:51:06,227   adding 'moleculekit/tools/hhblitsprofile.py'
2023-11-03T16:51:06,228   adding 'moleculekit/tools/moleculechecks.py'
2023-11-03T16:51:06,234   adding 'moleculekit/tools/preparation.py'
2023-11-03T16:51:06,237   adding 'moleculekit/tools/preparation_customres.py'
2023-11-03T16:51:06,239   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-11-03T16:51:06,242   adding 'moleculekit/tools/voxeldescriptors.py'
2023-11-03T16:51:06,244   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-11-03T16:51:06,245   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-11-03T16:51:06,334   adding 'moleculekit/wrapping/wrapping.cpp'
2023-11-03T16:51:06,343   adding 'moleculekit/wrapping/wrapping.pyx'
2023-11-03T16:51:06,433   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-11-03T16:51:06,441   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-11-03T16:51:06,442   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-11-03T16:51:06,446   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-11-03T16:51:06,447   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-11-03T16:51:06,448   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-11-03T16:51:06,455   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-11-03T16:51:06,457   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-11-03T16:51:06,459   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-11-03T16:51:06,462   adding 'moleculekit-1.8.6.dist-info/LICENSE'
2023-11-03T16:51:06,463   adding 'moleculekit-1.8.6.dist-info/METADATA'
2023-11-03T16:51:06,464   adding 'moleculekit-1.8.6.dist-info/WHEEL'
2023-11-03T16:51:06,465   adding 'moleculekit-1.8.6.dist-info/top_level.txt'
2023-11-03T16:51:06,470   adding 'moleculekit-1.8.6.dist-info/RECORD'
2023-11-03T16:51:06,632   removing build/bdist.linux-armv7l/wheel
2023-11-03T16:51:06,893   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-11-03T16:51:07,158   Created wheel for moleculekit: filename=moleculekit-1.8.6-cp39-cp39-linux_armv7l.whl size=12598051 sha256=cc8e96fdb0a58d7cc3d4e1f67740bd40396e9da98b8686d2f1916345da706922
2023-11-03T16:51:07,159   Stored in directory: /tmp/pip-ephem-wheel-cache-5r2s4fbh/wheels/88/6e/34/1d4c00fd55ea90c4211d1d137a9ef164447096aca2b7de115a
2023-11-03T16:51:07,184 Successfully built moleculekit
2023-11-03T16:51:07,483 Removed build tracker: '/tmp/pip-build-tracker-t5eutqa2'