2023-11-03T19:08:07,130 Created temporary directory: /tmp/pip-build-tracker-ucfz79kd 2023-11-03T19:08:07,131 Initialized build tracking at /tmp/pip-build-tracker-ucfz79kd 2023-11-03T19:08:07,132 Created build tracker: /tmp/pip-build-tracker-ucfz79kd 2023-11-03T19:08:07,132 Entered build tracker: /tmp/pip-build-tracker-ucfz79kd 2023-11-03T19:08:07,133 Created temporary directory: /tmp/pip-wheel-2lzsj04v 2023-11-03T19:08:07,136 Created temporary directory: /tmp/pip-ephem-wheel-cache-h1151_xm 2023-11-03T19:08:07,159 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-03T19:08:07,163 2 location(s) to search for versions of nmdc-runtime: 2023-11-03T19:08:07,163 * https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,163 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,163 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,164 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,166 Found index url https://pypi.org/simple/ 2023-11-03T19:08:07,410 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-03T19:08:07,414 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,415 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-03T19:08:07,416 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,417 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-03T19:08:07,417 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,418 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-03T19:08:07,419 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,420 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,421 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-03T19:08:07,421 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:08:07,422 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:08:07,423 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-03T19:08:07,424 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:08:07,425 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-03T19:08:07,425 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:08:07,426 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-03T19:08:07,427 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,428 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,429 Found index url https://www.piwheels.org/simple/ 2023-11-03T19:08:07,602 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-03T19:08:07,605 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,605 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,606 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,606 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:08:07,607 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,608 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:08:07,629 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-03T19:08:07,649 Collecting nmdc-runtime==1.0.4 2023-11-03T19:08:07,651 Created temporary directory: /tmp/pip-unpack-j0e2zua_ 2023-11-03T19:08:07,885 Downloading nmdc_runtime-1.0.4.tar.gz (63.6 MB) 2023-11-03T19:08:26,151 Added nmdc-runtime==1.0.4 from https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-ucfz79kd' 2023-11-03T19:08:26,153 Running setup.py (path:/tmp/pip-wheel-2lzsj04v/nmdc-runtime_3f796b5889ab43deb10fc11bf91166b2/setup.py) egg_info for package nmdc-runtime 2023-11-03T19:08:26,154 Created temporary directory: /tmp/pip-pip-egg-info-w5d4f2nm 2023-11-03T19:08:26,154 Preparing metadata (setup.py): started 2023-11-03T19:08:26,156 Running command python setup.py egg_info 2023-11-03T19:08:26,878 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-03T19:08:26,878 !! 2023-11-03T19:08:26,879 ******************************************************************************** 2023-11-03T19:08:26,880 Requirements should be satisfied by a PEP 517 installer. 2023-11-03T19:08:26,880 If you are using pip, you can try `pip install --use-pep517`. 2023-11-03T19:08:26,881 ******************************************************************************** 2023-11-03T19:08:26,882 !! 2023-11-03T19:08:26,882 dist.fetch_build_eggs(dist.setup_requires) 2023-11-03T19:08:29,999 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-03T19:08:30,107 running egg_info 2023-11-03T19:08:30,109 creating /tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info 2023-11-03T19:08:30,138 writing /tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/PKG-INFO 2023-11-03T19:08:30,142 writing dependency_links to /tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/dependency_links.txt 2023-11-03T19:08:30,143 writing entry points to /tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/entry_points.txt 2023-11-03T19:08:30,145 writing top-level names to /tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/top_level.txt 2023-11-03T19:08:30,146 writing manifest file '/tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:08:30,335 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-03T19:08:30,341 reading manifest file '/tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:08:30,343 adding license file 'LICENSE' 2023-11-03T19:08:30,347 writing manifest file '/tmp/pip-pip-egg-info-w5d4f2nm/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:08:30,465 Preparing metadata (setup.py): finished with status 'done' 2023-11-03T19:08:30,469 Source in /tmp/pip-wheel-2lzsj04v/nmdc-runtime_3f796b5889ab43deb10fc11bf91166b2 has version 1.0.4, which satisfies requirement nmdc-runtime==1.0.4 from https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz 2023-11-03T19:08:30,470 Removed nmdc-runtime==1.0.4 from https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-ucfz79kd' 2023-11-03T19:08:30,476 Created temporary directory: /tmp/pip-unpack-9gyvehog 2023-11-03T19:08:30,477 Created temporary directory: /tmp/pip-unpack-tokdkzef 2023-11-03T19:08:30,481 Building wheels for collected packages: nmdc-runtime 2023-11-03T19:08:30,485 Created temporary directory: /tmp/pip-wheel-g8j52pb_ 2023-11-03T19:08:30,486 Building wheel for nmdc-runtime (setup.py): started 2023-11-03T19:08:30,487 Destination directory: /tmp/pip-wheel-g8j52pb_ 2023-11-03T19:08:30,488 Running command python setup.py bdist_wheel 2023-11-03T19:08:31,211 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-03T19:08:31,211 !! 2023-11-03T19:08:31,212 ******************************************************************************** 2023-11-03T19:08:31,213 Requirements should be satisfied by a PEP 517 installer. 2023-11-03T19:08:31,214 If you are using pip, you can try `pip install --use-pep517`. 2023-11-03T19:08:31,214 ******************************************************************************** 2023-11-03T19:08:31,216 !! 2023-11-03T19:08:31,216 dist.fetch_build_eggs(dist.setup_requires) 2023-11-03T19:08:31,778 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-03T19:08:31,879 running bdist_wheel 2023-11-03T19:08:32,022 running build 2023-11-03T19:08:32,023 running build_py 2023-11-03T19:08:32,054 creating build 2023-11-03T19:08:32,055 creating build/lib 2023-11-03T19:08:32,055 creating build/lib/nmdc_runtime 2023-11-03T19:08:32,057 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-03T19:08:32,058 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-03T19:08:32,060 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-03T19:08:32,061 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-03T19:08:32,064 creating build/lib/nmdc_runtime/infrastructure 2023-11-03T19:08:32,065 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-03T19:08:32,067 creating build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,068 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,070 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,072 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,073 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,076 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,078 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:08:32,081 creating build/lib/nmdc_runtime/domain 2023-11-03T19:08:32,083 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-03T19:08:32,085 creating build/lib/nmdc_runtime/core 2023-11-03T19:08:32,086 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-03T19:08:32,088 creating build/lib/nmdc_runtime/minter 2023-11-03T19:08:32,089 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:08:32,091 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:08:32,092 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:08:32,094 creating build/lib/nmdc_runtime/client 2023-11-03T19:08:32,095 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-03T19:08:32,097 creating build/lib/nmdc_runtime/site 2023-11-03T19:08:32,098 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-03T19:08:32,101 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-03T19:08:32,103 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-03T19:08:32,105 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-03T19:08:32,106 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-03T19:08:32,109 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-03T19:08:32,111 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:08:32,112 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:08:32,114 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:08:32,116 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:08:32,117 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:08:32,119 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:08:32,120 creating build/lib/nmdc_runtime/domain/users 2023-11-03T19:08:32,121 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:08:32,123 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:08:32,125 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:08:32,127 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:08:32,129 creating build/lib/nmdc_runtime/core/db 2023-11-03T19:08:32,130 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-03T19:08:32,132 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-03T19:08:32,133 creating build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,134 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,136 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,138 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,140 creating build/lib/nmdc_runtime/minter/domain 2023-11-03T19:08:32,140 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-03T19:08:32,142 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-03T19:08:32,144 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:08:32,145 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:08:32,146 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:08:32,148 creating build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:08:32,149 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:08:32,151 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:08:32,153 creating build/lib/nmdc_runtime/site/normalization 2023-11-03T19:08:32,154 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-03T19:08:32,156 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-03T19:08:32,158 creating build/lib/nmdc_runtime/site/validation 2023-11-03T19:08:32,159 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:08:32,161 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:08:32,162 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:08:32,164 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:08:32,165 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:08:32,168 creating build/lib/nmdc_runtime/site/backup 2023-11-03T19:08:32,169 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:08:32,171 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:08:32,173 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:08:32,174 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:08:32,176 creating build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:08:32,177 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:08:32,179 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:08:32,181 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,182 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,184 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,186 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,188 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,189 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,191 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,195 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,197 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,198 creating build/lib/nmdc_runtime/site/export 2023-11-03T19:08:32,199 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-03T19:08:32,201 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-03T19:08:32,203 creating build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,204 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,206 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,207 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,210 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,211 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,212 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,215 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,217 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,219 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:08:32,262 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-03T19:08:32,262 !! 2023-11-03T19:08:32,263 ******************************************************************************** 2023-11-03T19:08:32,264 Please avoid running ``setup.py`` directly. 2023-11-03T19:08:32,264 Instead, use pypa/build, pypa/installer or other 2023-11-03T19:08:32,265 standards-based tools. 2023-11-03T19:08:32,266 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-03T19:08:32,267 ******************************************************************************** 2023-11-03T19:08:32,268 !! 2023-11-03T19:08:32,269 self.initialize_options() 2023-11-03T19:08:32,292 installing to build/bdist.linux-armv7l/wheel 2023-11-03T19:08:32,292 running install 2023-11-03T19:08:32,316 running install_lib 2023-11-03T19:08:32,345 creating build/bdist.linux-armv7l 2023-11-03T19:08:32,346 creating build/bdist.linux-armv7l/wheel 2023-11-03T19:08:32,347 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:08:32,349 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-03T19:08:32,350 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-03T19:08:32,352 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:08:32,353 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:08:32,355 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:08:32,356 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:08:32,358 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:08:32,359 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:08:32,362 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,363 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,365 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,367 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,368 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,371 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,373 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:08:32,377 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-03T19:08:32,377 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-03T19:08:32,379 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:08:32,380 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:08:32,382 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:08:32,383 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:08:32,385 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:08:32,387 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:08:32,389 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-03T19:08:32,390 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:08:32,391 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:08:32,393 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:08:32,394 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-03T19:08:32,396 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,397 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,399 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,401 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:08:32,403 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:08:32,404 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:08:32,405 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:08:32,407 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:08:32,409 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:08:32,410 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:08:32,412 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:08:32,414 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:08:32,416 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:08:32,417 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:08:32,420 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:08:32,421 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:08:32,423 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:08:32,425 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-03T19:08:32,425 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-03T19:08:32,427 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:08:32,429 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,430 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:08:32,431 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:08:32,434 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:08:32,435 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,437 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,440 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:08:32,441 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:08:32,444 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:08:32,446 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:08:32,448 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:08:32,450 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:08:32,453 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:08:32,454 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:08:32,456 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:08:32,458 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:08:32,460 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:08:32,462 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:08:32,463 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:08:32,465 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:08:32,467 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,468 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,470 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,471 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:08:32,473 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,475 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,477 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,477 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,479 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,483 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,485 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:08:32,486 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,489 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:08:32,490 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:08:32,492 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:08:32,493 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:08:32,496 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,497 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,499 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,500 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,503 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,505 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,507 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,509 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,511 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,513 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:08:32,516 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:08:32,518 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:08:32,520 running install_egg_info 2023-11-03T19:08:32,549 running egg_info 2023-11-03T19:08:32,577 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-03T19:08:32,581 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-03T19:08:32,584 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-03T19:08:32,585 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-03T19:08:32,692 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-03T19:08:32,695 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:08:32,754 adding license file 'LICENSE' 2023-11-03T19:08:32,771 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:08:32,773 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.4-py3.11.egg-info 2023-11-03T19:08:32,783 running install_scripts 2023-11-03T19:08:32,797 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.4.dist-info/WHEEL 2023-11-03T19:08:32,799 creating '/tmp/pip-wheel-g8j52pb_/nmdc_runtime-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-03T19:08:32,801 adding 'nmdc_runtime/__init__.py' 2023-11-03T19:08:32,803 adding 'nmdc_runtime/containers.py' 2023-11-03T19:08:32,804 adding 'nmdc_runtime/main.py' 2023-11-03T19:08:32,806 adding 'nmdc_runtime/util.py' 2023-11-03T19:08:32,808 adding 'nmdc_runtime/client/__init__.py' 2023-11-03T19:08:32,810 adding 'nmdc_runtime/core/__init__.py' 2023-11-03T19:08:32,811 adding 'nmdc_runtime/core/db/Database.py' 2023-11-03T19:08:32,812 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-03T19:08:32,814 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-03T19:08:32,815 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-03T19:08:32,816 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-03T19:08:32,818 adding 'nmdc_runtime/domain/__init__.py' 2023-11-03T19:08:32,819 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-03T19:08:32,820 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-03T19:08:32,821 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-03T19:08:32,822 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-03T19:08:32,824 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-03T19:08:32,825 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-03T19:08:32,826 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-03T19:08:32,828 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-03T19:08:32,829 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-03T19:08:32,830 adding 'nmdc_runtime/lib/__init__.py' 2023-11-03T19:08:32,832 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-03T19:08:32,833 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-03T19:08:32,837 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-03T19:08:32,838 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-03T19:08:32,844 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-03T19:08:32,846 adding 'nmdc_runtime/minter/__init__.py' 2023-11-03T19:08:32,847 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-03T19:08:32,848 adding 'nmdc_runtime/minter/config.py' 2023-11-03T19:08:32,850 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-03T19:08:32,852 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-03T19:08:32,853 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-03T19:08:32,854 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-03T19:08:32,856 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-03T19:08:32,857 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-03T19:08:32,859 adding 'nmdc_runtime/site/__init__.py' 2023-11-03T19:08:32,861 adding 'nmdc_runtime/site/graphs.py' 2023-11-03T19:08:32,865 adding 'nmdc_runtime/site/ops.py' 2023-11-03T19:08:32,867 adding 'nmdc_runtime/site/repository.py' 2023-11-03T19:08:32,870 adding 'nmdc_runtime/site/resources.py' 2023-11-03T19:08:32,871 adding 'nmdc_runtime/site/util.py' 2023-11-03T19:08:32,873 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-03T19:08:32,874 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-03T19:08:32,876 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-03T19:08:32,877 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-03T19:08:32,879 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-03T19:08:32,880 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-03T19:08:32,882 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-03T19:08:32,883 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-03T19:08:32,884 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-03T19:08:32,886 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-03T19:08:32,888 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-03T19:08:32,889 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-03T19:08:32,890 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-03T19:08:32,892 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-03T19:08:32,894 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-03T19:08:32,895 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-03T19:08:32,903 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-03T19:08:32,905 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-03T19:08:32,906 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-03T19:08:32,907 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-03T19:08:32,910 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-03T19:08:32,912 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-03T19:08:32,916 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-03T19:08:32,919 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-03T19:08:32,920 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-03T19:08:32,921 adding 'nmdc_runtime/site/translation/util.py' 2023-11-03T19:08:32,923 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-03T19:08:32,924 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-03T19:08:32,925 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-03T19:08:32,927 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-03T19:08:32,928 adding 'nmdc_runtime/site/validation/util.py' 2023-11-03T19:08:32,931 adding 'nmdc_runtime-1.0.4.dist-info/LICENSE' 2023-11-03T19:08:32,933 adding 'nmdc_runtime-1.0.4.dist-info/METADATA' 2023-11-03T19:08:32,934 adding 'nmdc_runtime-1.0.4.dist-info/WHEEL' 2023-11-03T19:08:32,935 adding 'nmdc_runtime-1.0.4.dist-info/entry_points.txt' 2023-11-03T19:08:32,936 adding 'nmdc_runtime-1.0.4.dist-info/top_level.txt' 2023-11-03T19:08:32,938 adding 'nmdc_runtime-1.0.4.dist-info/RECORD' 2023-11-03T19:08:32,942 removing build/bdist.linux-armv7l/wheel 2023-11-03T19:08:33,104 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-03T19:08:33,108 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.4-py3-none-any.whl size=118871 sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 2023-11-03T19:08:33,109 Stored in directory: /tmp/pip-ephem-wheel-cache-h1151_xm/wheels/ae/8b/f1/50bfed43b6a0788ffd92360b0775e28c269afba6a34b4e59ee 2023-11-03T19:08:33,123 Successfully built nmdc-runtime 2023-11-03T19:08:33,130 Removed build tracker: '/tmp/pip-build-tracker-ucfz79kd'