2023-11-03T19:16:25,483 Created temporary directory: /tmp/pip-build-tracker-4221qlf9 2023-11-03T19:16:25,484 Initialized build tracking at /tmp/pip-build-tracker-4221qlf9 2023-11-03T19:16:25,484 Created build tracker: /tmp/pip-build-tracker-4221qlf9 2023-11-03T19:16:25,485 Entered build tracker: /tmp/pip-build-tracker-4221qlf9 2023-11-03T19:16:25,486 Created temporary directory: /tmp/pip-wheel-fg32ips2 2023-11-03T19:16:25,489 Created temporary directory: /tmp/pip-ephem-wheel-cache-txgk3l46 2023-11-03T19:16:25,511 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-03T19:16:25,515 2 location(s) to search for versions of nmdc-runtime: 2023-11-03T19:16:25,515 * https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,515 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,516 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,517 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,518 Found index url https://pypi.org/simple/ 2023-11-03T19:16:25,663 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-03T19:16:25,667 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,668 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-03T19:16:25,669 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,670 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-03T19:16:25,670 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,671 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-03T19:16:25,672 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,673 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,674 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-03T19:16:25,675 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:16:25,675 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:16:25,676 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-03T19:16:25,677 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:16:25,678 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-03T19:16:25,679 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:16:25,679 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-03T19:16:25,680 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,681 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,682 Found index url https://www.piwheels.org/simple/ 2023-11-03T19:16:25,872 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-03T19:16:25,875 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:16:25,876 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,877 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,877 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,878 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:16:25,878 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,879 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:16:25,900 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-03T19:16:25,919 Collecting nmdc-runtime==1.0.5 2023-11-03T19:16:25,921 Created temporary directory: /tmp/pip-unpack-k__0zkt3 2023-11-03T19:16:26,156 Downloading nmdc_runtime-1.0.5.tar.gz (63.6 MB) 2023-11-03T19:16:42,564 Added nmdc-runtime==1.0.5 from https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-4221qlf9' 2023-11-03T19:16:42,566 Running setup.py (path:/tmp/pip-wheel-fg32ips2/nmdc-runtime_9ad9efe9aea549ffa32365f118c5e8f8/setup.py) egg_info for package nmdc-runtime 2023-11-03T19:16:42,567 Created temporary directory: /tmp/pip-pip-egg-info-aqincuts 2023-11-03T19:16:42,568 Preparing metadata (setup.py): started 2023-11-03T19:16:42,569 Running command python setup.py egg_info 2023-11-03T19:16:43,288 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-03T19:16:43,288 !! 2023-11-03T19:16:43,289 ******************************************************************************** 2023-11-03T19:16:43,290 Requirements should be satisfied by a PEP 517 installer. 2023-11-03T19:16:43,290 If you are using pip, you can try `pip install --use-pep517`. 2023-11-03T19:16:43,291 ******************************************************************************** 2023-11-03T19:16:43,292 !! 2023-11-03T19:16:43,292 dist.fetch_build_eggs(dist.setup_requires) 2023-11-03T19:16:46,426 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-03T19:16:46,525 running egg_info 2023-11-03T19:16:46,526 creating /tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info 2023-11-03T19:16:46,553 writing /tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/PKG-INFO 2023-11-03T19:16:46,556 writing dependency_links to /tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/dependency_links.txt 2023-11-03T19:16:46,558 writing entry points to /tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/entry_points.txt 2023-11-03T19:16:46,560 writing top-level names to /tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/top_level.txt 2023-11-03T19:16:46,561 writing manifest file '/tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:16:46,736 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-03T19:16:46,742 reading manifest file '/tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:16:46,744 adding license file 'LICENSE' 2023-11-03T19:16:46,747 writing manifest file '/tmp/pip-pip-egg-info-aqincuts/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:16:46,864 Preparing metadata (setup.py): finished with status 'done' 2023-11-03T19:16:46,868 Source in /tmp/pip-wheel-fg32ips2/nmdc-runtime_9ad9efe9aea549ffa32365f118c5e8f8 has version 1.0.5, which satisfies requirement nmdc-runtime==1.0.5 from https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz 2023-11-03T19:16:46,869 Removed nmdc-runtime==1.0.5 from https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-4221qlf9' 2023-11-03T19:16:46,875 Created temporary directory: /tmp/pip-unpack-e_7syx9o 2023-11-03T19:16:46,876 Created temporary directory: /tmp/pip-unpack-skrdh3vg 2023-11-03T19:16:46,879 Building wheels for collected packages: nmdc-runtime 2023-11-03T19:16:46,883 Created temporary directory: /tmp/pip-wheel-tjqg8506 2023-11-03T19:16:46,883 Building wheel for nmdc-runtime (setup.py): started 2023-11-03T19:16:46,885 Destination directory: /tmp/pip-wheel-tjqg8506 2023-11-03T19:16:46,885 Running command python setup.py bdist_wheel 2023-11-03T19:16:47,565 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-03T19:16:47,566 !! 2023-11-03T19:16:47,567 ******************************************************************************** 2023-11-03T19:16:47,567 Requirements should be satisfied by a PEP 517 installer. 2023-11-03T19:16:47,568 If you are using pip, you can try `pip install --use-pep517`. 2023-11-03T19:16:47,569 ******************************************************************************** 2023-11-03T19:16:47,570 !! 2023-11-03T19:16:47,571 dist.fetch_build_eggs(dist.setup_requires) 2023-11-03T19:16:48,093 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-03T19:16:48,183 running bdist_wheel 2023-11-03T19:16:48,288 running build 2023-11-03T19:16:48,289 running build_py 2023-11-03T19:16:48,318 creating build 2023-11-03T19:16:48,319 creating build/lib 2023-11-03T19:16:48,319 creating build/lib/nmdc_runtime 2023-11-03T19:16:48,320 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-03T19:16:48,322 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-03T19:16:48,323 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-03T19:16:48,325 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-03T19:16:48,328 creating build/lib/nmdc_runtime/core 2023-11-03T19:16:48,328 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-03T19:16:48,330 creating build/lib/nmdc_runtime/domain 2023-11-03T19:16:48,331 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-03T19:16:48,333 creating build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,334 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,336 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,338 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,340 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,341 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,343 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:16:48,347 creating build/lib/nmdc_runtime/site 2023-11-03T19:16:48,348 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-03T19:16:48,349 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-03T19:16:48,352 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-03T19:16:48,354 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-03T19:16:48,356 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-03T19:16:48,358 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-03T19:16:48,361 creating build/lib/nmdc_runtime/infrastructure 2023-11-03T19:16:48,361 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-03T19:16:48,363 creating build/lib/nmdc_runtime/client 2023-11-03T19:16:48,364 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-03T19:16:48,366 creating build/lib/nmdc_runtime/minter 2023-11-03T19:16:48,367 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:16:48,368 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:16:48,370 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:16:48,372 creating build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,373 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,375 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,376 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,379 creating build/lib/nmdc_runtime/core/db 2023-11-03T19:16:48,380 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-03T19:16:48,381 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-03T19:16:48,383 creating build/lib/nmdc_runtime/domain/users 2023-11-03T19:16:48,384 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:16:48,386 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:16:48,387 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:16:48,389 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:16:48,391 creating build/lib/nmdc_runtime/site/backup 2023-11-03T19:16:48,391 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:16:48,393 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:16:48,394 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:16:48,396 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:16:48,398 creating build/lib/nmdc_runtime/site/validation 2023-11-03T19:16:48,399 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:16:48,401 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:16:48,402 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:16:48,404 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:16:48,406 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:16:48,408 creating build/lib/nmdc_runtime/site/export 2023-11-03T19:16:48,409 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-03T19:16:48,410 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-03T19:16:48,412 creating build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,413 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,416 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,418 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,420 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,421 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,423 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,424 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,426 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,428 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:16:48,431 creating build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:16:48,432 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:16:48,433 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:16:48,435 creating build/lib/nmdc_runtime/site/normalization 2023-11-03T19:16:48,436 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-03T19:16:48,438 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-03T19:16:48,440 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,441 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,442 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,445 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,448 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,450 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,451 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,452 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,454 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,456 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:16:48,457 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:16:48,458 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:16:48,460 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:16:48,461 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:16:48,462 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:16:48,464 creating build/lib/nmdc_runtime/minter/domain 2023-11-03T19:16:48,465 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-03T19:16:48,466 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-03T19:16:48,468 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:16:48,469 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:16:48,470 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:16:48,472 creating build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:16:48,473 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:16:48,475 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:16:48,515 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-03T19:16:48,515 !! 2023-11-03T19:16:48,517 ******************************************************************************** 2023-11-03T19:16:48,517 Please avoid running ``setup.py`` directly. 2023-11-03T19:16:48,518 Instead, use pypa/build, pypa/installer or other 2023-11-03T19:16:48,519 standards-based tools. 2023-11-03T19:16:48,520 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-03T19:16:48,520 ******************************************************************************** 2023-11-03T19:16:48,522 !! 2023-11-03T19:16:48,522 self.initialize_options() 2023-11-03T19:16:48,543 installing to build/bdist.linux-armv7l/wheel 2023-11-03T19:16:48,544 running install 2023-11-03T19:16:48,568 running install_lib 2023-11-03T19:16:48,595 creating build/bdist.linux-armv7l 2023-11-03T19:16:48,596 creating build/bdist.linux-armv7l/wheel 2023-11-03T19:16:48,598 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:16:48,599 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:16:48,600 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:16:48,602 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-03T19:16:48,603 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-03T19:16:48,605 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,606 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,608 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,610 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:16:48,612 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:16:48,613 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:16:48,614 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:16:48,616 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-03T19:16:48,618 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:16:48,618 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:16:48,620 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:16:48,621 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:16:48,623 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:16:48,625 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-03T19:16:48,626 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:16:48,629 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,630 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,632 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,634 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,635 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,637 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,640 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:16:48,643 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,644 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:16:48,645 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:16:48,647 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:16:48,648 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:16:48,650 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:16:48,653 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:16:48,653 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:16:48,655 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:16:48,657 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:16:48,659 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:16:48,661 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:16:48,662 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,664 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,667 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:16:48,668 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:16:48,670 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:16:48,671 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,674 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,675 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,678 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,680 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,682 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,683 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,685 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,687 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,689 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,691 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:16:48,694 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:16:48,695 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:16:48,696 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:16:48,699 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:16:48,700 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:16:48,701 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:16:48,703 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,704 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,706 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,708 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,711 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:16:48,713 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,715 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,717 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:16:48,720 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,721 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,722 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,724 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:16:48,726 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-03T19:16:48,727 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-03T19:16:48,729 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:16:48,730 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:16:48,732 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:16:48,734 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:16:48,734 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:16:48,736 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:16:48,738 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:16:48,740 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-03T19:16:48,741 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-03T19:16:48,743 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:16:48,743 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:16:48,745 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:16:48,746 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:16:48,748 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:16:48,749 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:16:48,751 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:16:48,752 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:16:48,754 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:16:48,756 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:16:48,757 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:16:48,759 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:16:48,761 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:16:48,762 running install_egg_info 2023-11-03T19:16:48,816 running egg_info 2023-11-03T19:16:48,842 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-03T19:16:48,845 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-03T19:16:48,847 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-03T19:16:48,848 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-03T19:16:48,950 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-03T19:16:48,953 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:16:49,013 adding license file 'LICENSE' 2023-11-03T19:16:49,029 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:16:49,032 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.5-py3.11.egg-info 2023-11-03T19:16:49,043 running install_scripts 2023-11-03T19:16:49,057 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.5.dist-info/WHEEL 2023-11-03T19:16:49,059 creating '/tmp/pip-wheel-tjqg8506/nmdc_runtime-1.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-03T19:16:49,062 adding 'nmdc_runtime/__init__.py' 2023-11-03T19:16:49,063 adding 'nmdc_runtime/containers.py' 2023-11-03T19:16:49,064 adding 'nmdc_runtime/main.py' 2023-11-03T19:16:49,067 adding 'nmdc_runtime/util.py' 2023-11-03T19:16:49,068 adding 'nmdc_runtime/client/__init__.py' 2023-11-03T19:16:49,070 adding 'nmdc_runtime/core/__init__.py' 2023-11-03T19:16:49,072 adding 'nmdc_runtime/core/db/Database.py' 2023-11-03T19:16:49,073 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-03T19:16:49,074 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-03T19:16:49,076 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-03T19:16:49,077 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-03T19:16:49,078 adding 'nmdc_runtime/domain/__init__.py' 2023-11-03T19:16:49,080 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-03T19:16:49,081 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-03T19:16:49,082 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-03T19:16:49,083 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-03T19:16:49,085 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-03T19:16:49,086 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-03T19:16:49,087 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-03T19:16:49,089 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-03T19:16:49,090 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-03T19:16:49,092 adding 'nmdc_runtime/lib/__init__.py' 2023-11-03T19:16:49,093 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-03T19:16:49,094 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-03T19:16:49,098 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-03T19:16:49,100 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-03T19:16:49,105 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-03T19:16:49,107 adding 'nmdc_runtime/minter/__init__.py' 2023-11-03T19:16:49,108 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-03T19:16:49,109 adding 'nmdc_runtime/minter/config.py' 2023-11-03T19:16:49,111 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-03T19:16:49,113 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-03T19:16:49,114 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-03T19:16:49,116 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-03T19:16:49,117 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-03T19:16:49,119 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-03T19:16:49,120 adding 'nmdc_runtime/site/__init__.py' 2023-11-03T19:16:49,122 adding 'nmdc_runtime/site/graphs.py' 2023-11-03T19:16:49,125 adding 'nmdc_runtime/site/ops.py' 2023-11-03T19:16:49,128 adding 'nmdc_runtime/site/repository.py' 2023-11-03T19:16:49,130 adding 'nmdc_runtime/site/resources.py' 2023-11-03T19:16:49,132 adding 'nmdc_runtime/site/util.py' 2023-11-03T19:16:49,133 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-03T19:16:49,135 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-03T19:16:49,136 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-03T19:16:49,137 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-03T19:16:49,139 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-03T19:16:49,140 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-03T19:16:49,144 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-03T19:16:49,145 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-03T19:16:49,146 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-03T19:16:49,148 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-03T19:16:49,149 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-03T19:16:49,151 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-03T19:16:49,152 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-03T19:16:49,154 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-03T19:16:49,155 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-03T19:16:49,156 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-03T19:16:49,164 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-03T19:16:49,166 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-03T19:16:49,167 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-03T19:16:49,168 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-03T19:16:49,171 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-03T19:16:49,173 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-03T19:16:49,177 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-03T19:16:49,180 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-03T19:16:49,181 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-03T19:16:49,182 adding 'nmdc_runtime/site/translation/util.py' 2023-11-03T19:16:49,184 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-03T19:16:49,185 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-03T19:16:49,186 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-03T19:16:49,187 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-03T19:16:49,189 adding 'nmdc_runtime/site/validation/util.py' 2023-11-03T19:16:49,191 adding 'nmdc_runtime-1.0.5.dist-info/LICENSE' 2023-11-03T19:16:49,193 adding 'nmdc_runtime-1.0.5.dist-info/METADATA' 2023-11-03T19:16:49,194 adding 'nmdc_runtime-1.0.5.dist-info/WHEEL' 2023-11-03T19:16:49,194 adding 'nmdc_runtime-1.0.5.dist-info/entry_points.txt' 2023-11-03T19:16:49,195 adding 'nmdc_runtime-1.0.5.dist-info/top_level.txt' 2023-11-03T19:16:49,197 adding 'nmdc_runtime-1.0.5.dist-info/RECORD' 2023-11-03T19:16:49,200 removing build/bdist.linux-armv7l/wheel 2023-11-03T19:16:49,341 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-03T19:16:49,345 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.5-py3-none-any.whl size=118869 sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 2023-11-03T19:16:49,346 Stored in directory: /tmp/pip-ephem-wheel-cache-txgk3l46/wheels/c3/7c/a2/9ea9046e309d0d780c6d663e4baf231d568732912a1d6ba3ef 2023-11-03T19:16:49,359 Successfully built nmdc-runtime 2023-11-03T19:16:49,365 Removed build tracker: '/tmp/pip-build-tracker-4221qlf9'