2023-11-03T19:18:39,556 Created temporary directory: /tmp/pip-build-tracker-r3ky7m_k 2023-11-03T19:18:39,558 Initialized build tracking at /tmp/pip-build-tracker-r3ky7m_k 2023-11-03T19:18:39,558 Created build tracker: /tmp/pip-build-tracker-r3ky7m_k 2023-11-03T19:18:39,558 Entered build tracker: /tmp/pip-build-tracker-r3ky7m_k 2023-11-03T19:18:39,559 Created temporary directory: /tmp/pip-wheel-8uhwco_c 2023-11-03T19:18:39,563 Created temporary directory: /tmp/pip-ephem-wheel-cache-8s6gtxox 2023-11-03T19:18:39,585 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-03T19:18:39,589 2 location(s) to search for versions of nmdc-runtime: 2023-11-03T19:18:39,589 * https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,589 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,590 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,590 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,592 Found index url https://pypi.org/simple/ 2023-11-03T19:18:39,736 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-03T19:18:39,740 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,741 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-03T19:18:39,742 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,743 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-03T19:18:39,743 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,744 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-03T19:18:39,745 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,746 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,747 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-03T19:18:39,747 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:18:39,748 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:18:39,749 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-03T19:18:39,750 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:18:39,751 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-03T19:18:39,751 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:18:39,752 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-03T19:18:39,753 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,753 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,754 Found index url https://www.piwheels.org/simple/ 2023-11-03T19:18:39,967 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-03T19:18:39,970 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:18:39,971 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-03T19:18:39,971 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,972 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,973 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,973 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-03T19:18:39,974 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,975 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-03T19:18:39,994 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-03T19:18:40,012 Collecting nmdc-runtime==1.0.6 2023-11-03T19:18:40,014 Created temporary directory: /tmp/pip-unpack-xkq_sugh 2023-11-03T19:18:40,247 Downloading nmdc_runtime-1.0.6.tar.gz (63.6 MB) 2023-11-03T19:18:58,773 Added nmdc-runtime==1.0.6 from https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-r3ky7m_k' 2023-11-03T19:18:58,774 Running setup.py (path:/tmp/pip-wheel-8uhwco_c/nmdc-runtime_7f2af3ee16af4ef9ae6897678bec5593/setup.py) egg_info for package nmdc-runtime 2023-11-03T19:18:58,775 Created temporary directory: /tmp/pip-pip-egg-info-fwyf9amr 2023-11-03T19:18:58,776 Preparing metadata (setup.py): started 2023-11-03T19:18:58,777 Running command python setup.py egg_info 2023-11-03T19:18:59,500 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-03T19:18:59,501 !! 2023-11-03T19:18:59,502 ******************************************************************************** 2023-11-03T19:18:59,502 Requirements should be satisfied by a PEP 517 installer. 2023-11-03T19:18:59,503 If you are using pip, you can try `pip install --use-pep517`. 2023-11-03T19:18:59,503 ******************************************************************************** 2023-11-03T19:18:59,505 !! 2023-11-03T19:18:59,505 dist.fetch_build_eggs(dist.setup_requires) 2023-11-03T19:19:02,586 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-03T19:19:02,786 running egg_info 2023-11-03T19:19:02,788 creating /tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info 2023-11-03T19:19:02,923 writing /tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/PKG-INFO 2023-11-03T19:19:02,938 writing dependency_links to /tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/dependency_links.txt 2023-11-03T19:19:02,940 writing entry points to /tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/entry_points.txt 2023-11-03T19:19:02,945 writing top-level names to /tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/top_level.txt 2023-11-03T19:19:02,947 writing manifest file '/tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:19:03,334 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-03T19:19:03,388 reading manifest file '/tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:19:03,390 adding license file 'LICENSE' 2023-11-03T19:19:03,394 writing manifest file '/tmp/pip-pip-egg-info-fwyf9amr/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:19:03,549 Preparing metadata (setup.py): finished with status 'done' 2023-11-03T19:19:03,567 Source in /tmp/pip-wheel-8uhwco_c/nmdc-runtime_7f2af3ee16af4ef9ae6897678bec5593 has version 1.0.6, which satisfies requirement nmdc-runtime==1.0.6 from https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz 2023-11-03T19:19:03,568 Removed nmdc-runtime==1.0.6 from https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-r3ky7m_k' 2023-11-03T19:19:03,575 Created temporary directory: /tmp/pip-unpack-2194waxp 2023-11-03T19:19:03,581 Created temporary directory: /tmp/pip-unpack-o0xl3mrb 2023-11-03T19:19:03,591 Building wheels for collected packages: nmdc-runtime 2023-11-03T19:19:03,608 Created temporary directory: /tmp/pip-wheel-0eaqngs3 2023-11-03T19:19:03,609 Building wheel for nmdc-runtime (setup.py): started 2023-11-03T19:19:03,610 Destination directory: /tmp/pip-wheel-0eaqngs3 2023-11-03T19:19:03,611 Running command python setup.py bdist_wheel 2023-11-03T19:19:04,448 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-03T19:19:04,449 !! 2023-11-03T19:19:04,450 ******************************************************************************** 2023-11-03T19:19:04,451 Requirements should be satisfied by a PEP 517 installer. 2023-11-03T19:19:04,451 If you are using pip, you can try `pip install --use-pep517`. 2023-11-03T19:19:04,452 ******************************************************************************** 2023-11-03T19:19:04,453 !! 2023-11-03T19:19:04,453 dist.fetch_build_eggs(dist.setup_requires) 2023-11-03T19:19:05,007 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-03T19:19:05,101 running bdist_wheel 2023-11-03T19:19:05,210 running build 2023-11-03T19:19:05,210 running build_py 2023-11-03T19:19:05,241 creating build 2023-11-03T19:19:05,242 creating build/lib 2023-11-03T19:19:05,243 creating build/lib/nmdc_runtime 2023-11-03T19:19:05,244 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-03T19:19:05,245 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-03T19:19:05,247 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-03T19:19:05,249 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-03T19:19:05,251 creating build/lib/nmdc_runtime/client 2023-11-03T19:19:05,252 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-03T19:19:05,254 creating build/lib/nmdc_runtime/minter 2023-11-03T19:19:05,255 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:19:05,257 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:19:05,258 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-03T19:19:05,261 creating build/lib/nmdc_runtime/domain 2023-11-03T19:19:05,262 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-03T19:19:05,264 creating build/lib/nmdc_runtime/infrastructure 2023-11-03T19:19:05,265 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-03T19:19:05,267 creating build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,268 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,270 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,271 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,274 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,277 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,279 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-03T19:19:05,282 creating build/lib/nmdc_runtime/site 2023-11-03T19:19:05,283 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-03T19:19:05,284 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-03T19:19:05,287 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-03T19:19:05,289 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-03T19:19:05,291 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-03T19:19:05,294 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-03T19:19:05,297 creating build/lib/nmdc_runtime/core 2023-11-03T19:19:05,298 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-03T19:19:05,300 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:19:05,301 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:19:05,303 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-03T19:19:05,305 creating build/lib/nmdc_runtime/minter/domain 2023-11-03T19:19:05,306 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-03T19:19:05,308 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-03T19:19:05,310 creating build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:19:05,311 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:19:05,312 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-03T19:19:05,315 creating build/lib/nmdc_runtime/domain/users 2023-11-03T19:19:05,316 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:19:05,317 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:19:05,319 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:19:05,321 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-03T19:19:05,323 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:19:05,324 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:19:05,325 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-03T19:19:05,327 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:19:05,328 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:19:05,330 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-03T19:19:05,332 creating build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,333 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,335 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,336 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,339 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,342 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,346 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,348 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,349 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,353 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-03T19:19:05,355 creating build/lib/nmdc_runtime/site/backup 2023-11-03T19:19:05,356 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:19:05,357 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:19:05,359 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:19:05,361 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-03T19:19:05,364 creating build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:19:05,364 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:19:05,366 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-03T19:19:05,368 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,369 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,371 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,373 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,375 creating build/lib/nmdc_runtime/site/validation 2023-11-03T19:19:05,376 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:19:05,378 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:19:05,379 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:19:05,381 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:19:05,383 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-03T19:19:05,385 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,386 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,387 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,389 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,393 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,395 creating build/lib/nmdc_runtime/site/normalization 2023-11-03T19:19:05,396 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-03T19:19:05,398 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-03T19:19:05,400 creating build/lib/nmdc_runtime/site/export 2023-11-03T19:19:05,401 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-03T19:19:05,402 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-03T19:19:05,405 creating build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,406 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,407 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,409 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,411 creating build/lib/nmdc_runtime/core/db 2023-11-03T19:19:05,412 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-03T19:19:05,414 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-03T19:19:05,455 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-03T19:19:05,456 !! 2023-11-03T19:19:05,457 ******************************************************************************** 2023-11-03T19:19:05,457 Please avoid running ``setup.py`` directly. 2023-11-03T19:19:05,458 Instead, use pypa/build, pypa/installer or other 2023-11-03T19:19:05,459 standards-based tools. 2023-11-03T19:19:05,460 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-03T19:19:05,460 ******************************************************************************** 2023-11-03T19:19:05,462 !! 2023-11-03T19:19:05,462 self.initialize_options() 2023-11-03T19:19:05,486 installing to build/bdist.linux-armv7l/wheel 2023-11-03T19:19:05,486 running install 2023-11-03T19:19:05,510 running install_lib 2023-11-03T19:19:05,540 creating build/bdist.linux-armv7l 2023-11-03T19:19:05,540 creating build/bdist.linux-armv7l/wheel 2023-11-03T19:19:05,542 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:19:05,543 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:19:05,545 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:19:05,546 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:19:05,550 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-03T19:19:05,551 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-03T19:19:05,553 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:19:05,554 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:19:05,555 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:19:05,557 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-03T19:19:05,559 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:19:05,561 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:19:05,562 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:19:05,563 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-03T19:19:05,566 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:19:05,567 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:19:05,569 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-03T19:19:05,572 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:19:05,574 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-03T19:19:05,575 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-03T19:19:05,578 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-03T19:19:05,579 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-03T19:19:05,581 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:19:05,582 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:19:05,583 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:19:05,585 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:19:05,587 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-03T19:19:05,590 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-03T19:19:05,591 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-03T19:19:05,593 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:19:05,594 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:19:05,596 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:19:05,597 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:19:05,599 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-03T19:19:05,600 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-03T19:19:05,603 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,604 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,606 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,608 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,610 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,615 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,617 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-03T19:19:05,620 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,621 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,623 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,626 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,627 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,628 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,630 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,633 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,635 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,639 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,641 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,643 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,646 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-03T19:19:05,649 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:19:05,650 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:19:05,651 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:19:05,653 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:19:05,655 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-03T19:19:05,658 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,660 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:19:05,661 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:19:05,663 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-03T19:19:05,666 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,666 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,668 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,671 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-03T19:19:05,673 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,676 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:19:05,677 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:19:05,679 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:19:05,680 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:19:05,683 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:19:05,685 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-03T19:19:05,687 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,688 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,689 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,691 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,696 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-03T19:19:05,698 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:19:05,699 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:19:05,701 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-03T19:19:05,703 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,707 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:19:05,707 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:19:05,709 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-03T19:19:05,711 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-03T19:19:05,714 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-03T19:19:05,715 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-03T19:19:05,717 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,718 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,720 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,722 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-03T19:19:05,725 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:19:05,726 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:19:05,728 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-03T19:19:05,730 running install_egg_info 2023-11-03T19:19:05,787 running egg_info 2023-11-03T19:19:05,814 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-03T19:19:05,818 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-03T19:19:05,819 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-03T19:19:05,821 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-03T19:19:05,924 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-03T19:19:05,927 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:19:05,994 adding license file 'LICENSE' 2023-11-03T19:19:06,010 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-03T19:19:06,013 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.6-py3.11.egg-info 2023-11-03T19:19:06,025 running install_scripts 2023-11-03T19:19:06,040 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.6.dist-info/WHEEL 2023-11-03T19:19:06,043 creating '/tmp/pip-wheel-0eaqngs3/nmdc_runtime-1.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-03T19:19:06,045 adding 'nmdc_runtime/__init__.py' 2023-11-03T19:19:06,046 adding 'nmdc_runtime/containers.py' 2023-11-03T19:19:06,048 adding 'nmdc_runtime/main.py' 2023-11-03T19:19:06,050 adding 'nmdc_runtime/util.py' 2023-11-03T19:19:06,052 adding 'nmdc_runtime/client/__init__.py' 2023-11-03T19:19:06,054 adding 'nmdc_runtime/core/__init__.py' 2023-11-03T19:19:06,056 adding 'nmdc_runtime/core/db/Database.py' 2023-11-03T19:19:06,057 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-03T19:19:06,059 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-03T19:19:06,060 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-03T19:19:06,061 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-03T19:19:06,063 adding 'nmdc_runtime/domain/__init__.py' 2023-11-03T19:19:06,065 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-03T19:19:06,066 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-03T19:19:06,067 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-03T19:19:06,068 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-03T19:19:06,070 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-03T19:19:06,072 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-03T19:19:06,073 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-03T19:19:06,075 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-03T19:19:06,076 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-03T19:19:06,078 adding 'nmdc_runtime/lib/__init__.py' 2023-11-03T19:19:06,079 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-03T19:19:06,080 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-03T19:19:06,084 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-03T19:19:06,086 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-03T19:19:06,091 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-03T19:19:06,093 adding 'nmdc_runtime/minter/__init__.py' 2023-11-03T19:19:06,094 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-03T19:19:06,096 adding 'nmdc_runtime/minter/config.py' 2023-11-03T19:19:06,098 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-03T19:19:06,099 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-03T19:19:06,101 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-03T19:19:06,102 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-03T19:19:06,104 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-03T19:19:06,106 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-03T19:19:06,107 adding 'nmdc_runtime/site/__init__.py' 2023-11-03T19:19:06,109 adding 'nmdc_runtime/site/graphs.py' 2023-11-03T19:19:06,113 adding 'nmdc_runtime/site/ops.py' 2023-11-03T19:19:06,115 adding 'nmdc_runtime/site/repository.py' 2023-11-03T19:19:06,118 adding 'nmdc_runtime/site/resources.py' 2023-11-03T19:19:06,119 adding 'nmdc_runtime/site/util.py' 2023-11-03T19:19:06,121 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-03T19:19:06,122 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-03T19:19:06,124 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-03T19:19:06,125 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-03T19:19:06,127 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-03T19:19:06,128 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-03T19:19:06,130 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-03T19:19:06,131 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-03T19:19:06,132 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-03T19:19:06,134 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-03T19:19:06,135 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-03T19:19:06,137 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-03T19:19:06,138 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-03T19:19:06,140 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-03T19:19:06,141 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-03T19:19:06,143 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-03T19:19:06,151 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-03T19:19:06,153 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-03T19:19:06,154 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-03T19:19:06,155 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-03T19:19:06,158 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-03T19:19:06,160 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-03T19:19:06,164 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-03T19:19:06,167 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-03T19:19:06,168 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-03T19:19:06,169 adding 'nmdc_runtime/site/translation/util.py' 2023-11-03T19:19:06,171 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-03T19:19:06,172 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-03T19:19:06,174 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-03T19:19:06,175 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-03T19:19:06,176 adding 'nmdc_runtime/site/validation/util.py' 2023-11-03T19:19:06,178 adding 'nmdc_runtime-1.0.6.dist-info/LICENSE' 2023-11-03T19:19:06,180 adding 'nmdc_runtime-1.0.6.dist-info/METADATA' 2023-11-03T19:19:06,181 adding 'nmdc_runtime-1.0.6.dist-info/WHEEL' 2023-11-03T19:19:06,182 adding 'nmdc_runtime-1.0.6.dist-info/entry_points.txt' 2023-11-03T19:19:06,183 adding 'nmdc_runtime-1.0.6.dist-info/top_level.txt' 2023-11-03T19:19:06,185 adding 'nmdc_runtime-1.0.6.dist-info/RECORD' 2023-11-03T19:19:06,188 removing build/bdist.linux-armv7l/wheel 2023-11-03T19:19:06,330 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-03T19:19:06,334 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.6-py3-none-any.whl size=118871 sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b 2023-11-03T19:19:06,336 Stored in directory: /tmp/pip-ephem-wheel-cache-8s6gtxox/wheels/3f/eb/68/3298ac2dae4631488ce70c361a1817a865e2a49cfe6867f69c 2023-11-03T19:19:06,348 Successfully built nmdc-runtime 2023-11-03T19:19:06,354 Removed build tracker: '/tmp/pip-build-tracker-r3ky7m_k'