2023-11-03T20:18:30,511 Created temporary directory: /tmp/pip-build-tracker-muhpuawg 2023-11-03T20:18:30,512 Initialized build tracking at /tmp/pip-build-tracker-muhpuawg 2023-11-03T20:18:30,512 Created build tracker: /tmp/pip-build-tracker-muhpuawg 2023-11-03T20:18:30,513 Entered build tracker: /tmp/pip-build-tracker-muhpuawg 2023-11-03T20:18:30,513 Created temporary directory: /tmp/pip-wheel-1rr34m91 2023-11-03T20:18:30,517 Created temporary directory: /tmp/pip-ephem-wheel-cache-lvee9h25 2023-11-03T20:18:30,543 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-03T20:18:30,547 2 location(s) to search for versions of dcfba: 2023-11-03T20:18:30,547 * https://pypi.org/simple/dcfba/ 2023-11-03T20:18:30,547 * https://www.piwheels.org/simple/dcfba/ 2023-11-03T20:18:30,548 Fetching project page and analyzing links: https://pypi.org/simple/dcfba/ 2023-11-03T20:18:30,548 Getting page https://pypi.org/simple/dcfba/ 2023-11-03T20:18:30,549 Found index url https://pypi.org/simple/ 2023-11-03T20:18:30,601 Fetched page https://pypi.org/simple/dcfba/ as application/vnd.pypi.simple.v1+json 2023-11-03T20:18:30,603 Skipping link: No binaries permitted for dcfba: https://files.pythonhosted.org/packages/dc/54/337a81ea27d362ece87e0328eba2e3de8bb0ca148db29e4b3a0b62592ff7/dcFBA-0.1.0-py3-none-any.whl (from https://pypi.org/simple/dcfba/) (requires-python:<3.11,>=3.8) 2023-11-03T20:18:30,604 Found link https://files.pythonhosted.org/packages/fc/3b/9b329eef7b8d7b3146320f09b4b0e69fc7975c59e09cc33b22bc266e0310/dcFBA-0.1.0.tar.gz (from https://pypi.org/simple/dcfba/) (requires-python:<3.11,>=3.8), version: 0.1.0 2023-11-03T20:18:30,604 Skipping link: No binaries permitted for dcfba: https://files.pythonhosted.org/packages/48/9b/c288577a305e0504f82c194fc40f5a99a59f324992372abe9e8b02ea827d/dcFBA-0.1.0.1-py3-none-any.whl (from https://pypi.org/simple/dcfba/) (requires-python:<3.11,>=3.8) 2023-11-03T20:18:30,605 Found link https://files.pythonhosted.org/packages/f6/f8/034abf9102dda577e5ca90b9310d40b8da1dc0262b5831ff251f9f999ac6/dcFBA-0.1.0.1.tar.gz (from https://pypi.org/simple/dcfba/) (requires-python:<3.11,>=3.8), version: 0.1.0.1 2023-11-03T20:18:30,605 Skipping link: No binaries permitted for dcfba: https://files.pythonhosted.org/packages/68/d3/7b110f19705cbd3cf95462b26e69ea89572a136eef98ed40d1e2b0b070f1/dcFBA-0.1.1-py3-none-any.whl (from https://pypi.org/simple/dcfba/) (requires-python:<3.11,>=3.8) 2023-11-03T20:18:30,606 Found link https://files.pythonhosted.org/packages/7b/6f/4f50d5a971acd8b800810b2d93eb46769bad7ca8b74428047f8c1f2ad3ef/dcFBA-0.1.1.tar.gz (from https://pypi.org/simple/dcfba/) (requires-python:<3.11,>=3.8), version: 0.1.1 2023-11-03T20:18:30,606 Fetching project page and analyzing links: https://www.piwheels.org/simple/dcfba/ 2023-11-03T20:18:30,607 Getting page https://www.piwheels.org/simple/dcfba/ 2023-11-03T20:18:30,608 Found index url https://www.piwheels.org/simple/ 2023-11-03T20:18:30,679 Fetched page https://www.piwheels.org/simple/dcfba/ as text/html 2023-11-03T20:18:30,681 Skipping link: No binaries permitted for dcfba: https://www.piwheels.org/simple/dcfba/dcFBA-0.1.0.1-py3-none-any.whl#sha256=7ff1621ced815a131c1ef5882efaa48b282026ae5bf0233950f39441e27ad108 (from https://www.piwheels.org/simple/dcfba/) (requires-python:<3.11,>=3.8) 2023-11-03T20:18:30,681 Skipping link: No binaries permitted for dcfba: https://www.piwheels.org/simple/dcfba/dcFBA-0.1.0-py3-none-any.whl#sha256=3078a831fe08babd09c792597dae26c71efbb65e6d81ca1ce6732a99ea58db7b (from https://www.piwheels.org/simple/dcfba/) (requires-python:<3.11,>=3.8) 2023-11-03T20:18:30,681 Skipping link: not a file: https://www.piwheels.org/simple/dcfba/ 2023-11-03T20:18:30,681 Skipping link: not a file: https://pypi.org/simple/dcfba/ 2023-11-03T20:18:30,699 Given no hashes to check 1 links for project 'dcfba': discarding no candidates 2023-11-03T20:18:30,715 Collecting dcfba==0.1.1 2023-11-03T20:18:30,717 Created temporary directory: /tmp/pip-unpack-sz236cne 2023-11-03T20:18:30,840 Downloading dcFBA-0.1.1.tar.gz (115 kB) 2023-11-03T20:18:31,000 Added dcfba==0.1.1 from https://files.pythonhosted.org/packages/7b/6f/4f50d5a971acd8b800810b2d93eb46769bad7ca8b74428047f8c1f2ad3ef/dcFBA-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-muhpuawg' 2023-11-03T20:18:31,005 Created temporary directory: /tmp/pip-build-env-1p0jfp7s 2023-11-03T20:18:31,015 Installing build dependencies: started 2023-11-03T20:18:31,016 Running command pip subprocess to install build dependencies 2023-11-03T20:18:32,163 Using pip 23.2.1 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-11-03T20:18:32,697 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-03T20:18:34,302 Collecting setuptools>=40.8.0 2023-11-03T20:18:34,372 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-11-03T20:18:34,634 Collecting wheel 2023-11-03T20:18:34,651 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB) 2023-11-03T20:18:36,581 Installing collected packages: wheel, setuptools 2023-11-03T20:18:36,801 Creating /tmp/pip-build-env-1p0jfp7s/overlay/bin 2023-11-03T20:18:36,803 changing mode of /tmp/pip-build-env-1p0jfp7s/overlay/bin/wheel to 755 2023-11-03T20:18:38,919 Successfully installed setuptools-68.2.2 wheel-0.41.3 2023-11-03T20:18:39,115 [notice] A new release of pip is available: 23.2.1 -> 23.3.1 2023-11-03T20:18:39,115 [notice] To update, run: python3 -m pip install --upgrade pip 2023-11-03T20:18:39,380 Installing build dependencies: finished with status 'done' 2023-11-03T20:18:39,385 Getting requirements to build wheel: started 2023-11-03T20:18:39,386 Running command Getting requirements to build wheel 2023-11-03T20:18:40,019 /tmp/pip-build-env-1p0jfp7s/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-11-03T20:18:40,019 corresp(dist, value, root_dir) 2023-11-03T20:18:40,315 running egg_info 2023-11-03T20:18:40,320 writing src/dcFBA.egg-info/PKG-INFO 2023-11-03T20:18:40,323 writing dependency_links to src/dcFBA.egg-info/dependency_links.txt 2023-11-03T20:18:40,325 writing requirements to src/dcFBA.egg-info/requires.txt 2023-11-03T20:18:40,326 writing top-level names to src/dcFBA.egg-info/top_level.txt 2023-11-03T20:18:40,345 reading manifest file 'src/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:40,349 adding license file 'LICENSE' 2023-11-03T20:18:40,352 writing manifest file 'src/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:40,458 Getting requirements to build wheel: finished with status 'done' 2023-11-03T20:18:40,467 Created temporary directory: /tmp/pip-modern-metadata-c5jhoc3m 2023-11-03T20:18:40,469 Preparing metadata (pyproject.toml): started 2023-11-03T20:18:40,470 Running command Preparing metadata (pyproject.toml) 2023-11-03T20:18:40,998 /tmp/pip-build-env-1p0jfp7s/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-11-03T20:18:40,999 corresp(dist, value, root_dir) 2023-11-03T20:18:41,281 running dist_info 2023-11-03T20:18:41,287 creating /tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info 2023-11-03T20:18:41,291 writing /tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/PKG-INFO 2023-11-03T20:18:41,294 writing dependency_links to /tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/dependency_links.txt 2023-11-03T20:18:41,296 writing requirements to /tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/requires.txt 2023-11-03T20:18:41,297 writing top-level names to /tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/top_level.txt 2023-11-03T20:18:41,298 writing manifest file '/tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:41,315 reading manifest file '/tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:41,317 adding license file 'LICENSE' 2023-11-03T20:18:41,320 writing manifest file '/tmp/pip-modern-metadata-c5jhoc3m/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:41,321 creating '/tmp/pip-modern-metadata-c5jhoc3m/dcFBA-0.1.1.dist-info' 2023-11-03T20:18:41,448 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-03T20:18:41,455 Source in /tmp/pip-wheel-1rr34m91/dcfba_a0dcb66ebdb246729bc5fd563eb06302 has version 0.1.1, which satisfies requirement dcfba==0.1.1 from https://files.pythonhosted.org/packages/7b/6f/4f50d5a971acd8b800810b2d93eb46769bad7ca8b74428047f8c1f2ad3ef/dcFBA-0.1.1.tar.gz 2023-11-03T20:18:41,456 Removed dcfba==0.1.1 from https://files.pythonhosted.org/packages/7b/6f/4f50d5a971acd8b800810b2d93eb46769bad7ca8b74428047f8c1f2ad3ef/dcFBA-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-muhpuawg' 2023-11-03T20:18:41,462 Created temporary directory: /tmp/pip-unpack-r6617jd5 2023-11-03T20:18:41,463 Created temporary directory: /tmp/pip-unpack-8n83n26y 2023-11-03T20:18:41,468 Building wheels for collected packages: dcfba 2023-11-03T20:18:41,472 Created temporary directory: /tmp/pip-wheel-lw0sd7ci 2023-11-03T20:18:41,473 Destination directory: /tmp/pip-wheel-lw0sd7ci 2023-11-03T20:18:41,475 Building wheel for dcfba (pyproject.toml): started 2023-11-03T20:18:41,475 Running command Building wheel for dcfba (pyproject.toml) 2023-11-03T20:18:41,994 /tmp/pip-build-env-1p0jfp7s/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-11-03T20:18:41,995 corresp(dist, value, root_dir) 2023-11-03T20:18:42,263 running bdist_wheel 2023-11-03T20:18:42,281 running build 2023-11-03T20:18:42,281 running build_py 2023-11-03T20:18:42,286 creating build 2023-11-03T20:18:42,286 creating build/lib 2023-11-03T20:18:42,287 creating build/lib/dcFBA 2023-11-03T20:18:42,288 copying src/dcFBA/__init__.py -> build/lib/dcFBA 2023-11-03T20:18:42,290 copying src/dcFBA/Exceptions.py -> build/lib/dcFBA 2023-11-03T20:18:42,291 copying src/dcFBA/DefaultModels.py -> build/lib/dcFBA 2023-11-03T20:18:42,314 creating build/lib/dcFBA/ToyModels 2023-11-03T20:18:42,314 copying src/dcFBA/ToyModels/model_c.py -> build/lib/dcFBA/ToyModels 2023-11-03T20:18:42,316 copying src/dcFBA/ToyModels/model_d.py -> build/lib/dcFBA/ToyModels 2023-11-03T20:18:42,318 copying src/dcFBA/ToyModels/__init__.py -> build/lib/dcFBA/ToyModels 2023-11-03T20:18:42,320 copying src/dcFBA/ToyModels/model_a.py -> build/lib/dcFBA/ToyModels 2023-11-03T20:18:42,321 copying src/dcFBA/ToyModels/model_b.py -> build/lib/dcFBA/ToyModels 2023-11-03T20:18:42,324 creating build/lib/dcFBA/Models 2023-11-03T20:18:42,325 copying src/dcFBA/Models/KineticsStruct.py -> build/lib/dcFBA/Models 2023-11-03T20:18:42,327 copying src/dcFBA/Models/CommunityModel.py -> build/lib/dcFBA/Models 2023-11-03T20:18:42,329 copying src/dcFBA/Models/__init__.py -> build/lib/dcFBA/Models 2023-11-03T20:18:42,330 copying src/dcFBA/Models/Transporters.py -> build/lib/dcFBA/Models 2023-11-03T20:18:42,333 creating build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,334 copying src/dcFBA/DynamicModels/DynamicModelBase.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,336 copying src/dcFBA/DynamicModels/DynamicJointFBA.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,337 copying src/dcFBA/DynamicModels/DynamicFBABase.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,339 copying src/dcFBA/DynamicModels/__init__.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,341 copying src/dcFBA/DynamicModels/DynamicSingleFBA.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,342 copying src/dcFBA/DynamicModels/DynamicParallelFBA.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,345 copying src/dcFBA/DynamicModels/EndPointFBA.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,347 copying src/dcFBA/DynamicModels/StaticOptimizationModel.py -> build/lib/dcFBA/DynamicModels 2023-11-03T20:18:42,350 creating build/lib/dcFBA/Helpers 2023-11-03T20:18:42,351 copying src/dcFBA/Helpers/BuildEndPointModel.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,353 copying src/dcFBA/Helpers/PlotsEndPointFBA.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,355 copying src/dcFBA/Helpers/BuildCommunityMatrix.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,357 copying src/dcFBA/Helpers/__init__.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,358 copying src/dcFBA/Helpers/ReduceModel.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,359 copying src/dcFBA/Helpers/OptimalSearch.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,361 copying src/dcFBA/Helpers/KineticsReaderInterface.py -> build/lib/dcFBA/Helpers 2023-11-03T20:18:42,363 running egg_info 2023-11-03T20:18:42,367 writing src/dcFBA.egg-info/PKG-INFO 2023-11-03T20:18:42,369 writing dependency_links to src/dcFBA.egg-info/dependency_links.txt 2023-11-03T20:18:42,371 writing requirements to src/dcFBA.egg-info/requires.txt 2023-11-03T20:18:42,372 writing top-level names to src/dcFBA.egg-info/top_level.txt 2023-11-03T20:18:42,382 reading manifest file 'src/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:42,384 adding license file 'LICENSE' 2023-11-03T20:18:42,388 writing manifest file 'src/dcFBA.egg-info/SOURCES.txt' 2023-11-03T20:18:42,391 /tmp/pip-build-env-1p0jfp7s/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'dcFBA.ToyModels.Examples' is absent from the `packages` configuration. 2023-11-03T20:18:42,391 !! 2023-11-03T20:18:42,391 ******************************************************************************** 2023-11-03T20:18:42,391 ############################ 2023-11-03T20:18:42,391 # Package would be ignored # 2023-11-03T20:18:42,392 ############################ 2023-11-03T20:18:42,392 Python recognizes 'dcFBA.ToyModels.Examples' as an importable package[^1], 2023-11-03T20:18:42,392 but it is absent from setuptools' `packages` configuration. 2023-11-03T20:18:42,392 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-03T20:18:42,392 package, please make sure that 'dcFBA.ToyModels.Examples' is explicitly added 2023-11-03T20:18:42,392 to the `packages` configuration field. 2023-11-03T20:18:42,393 Alternatively, you can also rely on setuptools' discovery methods 2023-11-03T20:18:42,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-03T20:18:42,393 instead of `find_packages(...)`/`find:`). 2023-11-03T20:18:42,393 You can read more about "package discovery" on setuptools documentation page: 2023-11-03T20:18:42,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-03T20:18:42,394 If you don't want 'dcFBA.ToyModels.Examples' to be distributed and are 2023-11-03T20:18:42,394 already explicitly excluding 'dcFBA.ToyModels.Examples' via 2023-11-03T20:18:42,394 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-03T20:18:42,394 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-03T20:18:42,394 combination with a more fine grained `package-data` configuration. 2023-11-03T20:18:42,394 You can read more about "package data files" on setuptools documentation page: 2023-11-03T20:18:42,395 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-03T20:18:42,395 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-03T20:18:42,395 even if it does not contain any `.py` files. 2023-11-03T20:18:42,395 On the other hand, currently there is no concept of package data 2023-11-03T20:18:42,396 directory, all directories are treated like packages. 2023-11-03T20:18:42,396 ******************************************************************************** 2023-11-03T20:18:42,396 !! 2023-11-03T20:18:42,396 check.warn(importable) 2023-11-03T20:18:42,396 creating build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,396 copying src/dcFBA/ToyModels/Examples/DJFBA_example.py -> build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,397 copying src/dcFBA/ToyModels/Examples/DynamicSingle_example.py -> build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,398 copying src/dcFBA/ToyModels/Examples/EndPointFBA_example.py -> build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,400 copying src/dcFBA/ToyModels/Examples/Parallel_example.py -> build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,402 copying src/dcFBA/ToyModels/Examples/epFBA_QP_example.py -> build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,404 copying src/dcFBA/ToyModels/Examples/strep_test.py -> build/lib/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,415 installing to build/bdist.linux-armv7l/wheel 2023-11-03T20:18:42,415 running install 2023-11-03T20:18:42,440 running install_lib 2023-11-03T20:18:42,445 creating build/bdist.linux-armv7l 2023-11-03T20:18:42,445 creating build/bdist.linux-armv7l/wheel 2023-11-03T20:18:42,447 creating build/bdist.linux-armv7l/wheel/dcFBA 2023-11-03T20:18:42,448 creating build/bdist.linux-armv7l/wheel/dcFBA/ToyModels 2023-11-03T20:18:42,449 copying build/lib/dcFBA/ToyModels/model_c.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels 2023-11-03T20:18:42,451 creating build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,452 copying build/lib/dcFBA/ToyModels/Examples/DJFBA_example.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,454 copying build/lib/dcFBA/ToyModels/Examples/Parallel_example.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,455 copying build/lib/dcFBA/ToyModels/Examples/EndPointFBA_example.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,457 copying build/lib/dcFBA/ToyModels/Examples/strep_test.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,459 copying build/lib/dcFBA/ToyModels/Examples/DynamicSingle_example.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,460 copying build/lib/dcFBA/ToyModels/Examples/epFBA_QP_example.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels/Examples 2023-11-03T20:18:42,462 copying build/lib/dcFBA/ToyModels/model_d.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels 2023-11-03T20:18:42,464 copying build/lib/dcFBA/ToyModels/__init__.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels 2023-11-03T20:18:42,465 copying build/lib/dcFBA/ToyModels/model_a.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels 2023-11-03T20:18:42,467 copying build/lib/dcFBA/ToyModels/model_b.py -> build/bdist.linux-armv7l/wheel/dcFBA/ToyModels 2023-11-03T20:18:42,470 creating build/bdist.linux-armv7l/wheel/dcFBA/Models 2023-11-03T20:18:42,470 copying build/lib/dcFBA/Models/KineticsStruct.py -> build/bdist.linux-armv7l/wheel/dcFBA/Models 2023-11-03T20:18:42,472 copying build/lib/dcFBA/Models/CommunityModel.py -> build/bdist.linux-armv7l/wheel/dcFBA/Models 2023-11-03T20:18:42,474 copying build/lib/dcFBA/Models/__init__.py -> build/bdist.linux-armv7l/wheel/dcFBA/Models 2023-11-03T20:18:42,476 copying build/lib/dcFBA/Models/Transporters.py -> build/bdist.linux-armv7l/wheel/dcFBA/Models 2023-11-03T20:18:42,478 creating build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,479 copying build/lib/dcFBA/DynamicModels/DynamicModelBase.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,481 copying build/lib/dcFBA/DynamicModels/DynamicJointFBA.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,483 copying build/lib/dcFBA/DynamicModels/DynamicFBABase.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,485 copying build/lib/dcFBA/DynamicModels/__init__.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,487 copying build/lib/dcFBA/DynamicModels/DynamicSingleFBA.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,488 copying build/lib/dcFBA/DynamicModels/DynamicParallelFBA.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,490 copying build/lib/dcFBA/DynamicModels/EndPointFBA.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,493 copying build/lib/dcFBA/DynamicModels/StaticOptimizationModel.py -> build/bdist.linux-armv7l/wheel/dcFBA/DynamicModels 2023-11-03T20:18:42,495 creating build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,496 copying build/lib/dcFBA/Helpers/BuildEndPointModel.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,498 copying build/lib/dcFBA/Helpers/PlotsEndPointFBA.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,500 copying build/lib/dcFBA/Helpers/BuildCommunityMatrix.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,502 copying build/lib/dcFBA/Helpers/__init__.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,503 copying build/lib/dcFBA/Helpers/ReduceModel.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,505 copying build/lib/dcFBA/Helpers/OptimalSearch.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,507 copying build/lib/dcFBA/Helpers/KineticsReaderInterface.py -> build/bdist.linux-armv7l/wheel/dcFBA/Helpers 2023-11-03T20:18:42,508 copying build/lib/dcFBA/__init__.py -> build/bdist.linux-armv7l/wheel/dcFBA 2023-11-03T20:18:42,510 copying build/lib/dcFBA/Exceptions.py -> build/bdist.linux-armv7l/wheel/dcFBA 2023-11-03T20:18:42,511 copying build/lib/dcFBA/DefaultModels.py -> build/bdist.linux-armv7l/wheel/dcFBA 2023-11-03T20:18:42,532 running install_egg_info 2023-11-03T20:18:42,536 Copying src/dcFBA.egg-info to build/bdist.linux-armv7l/wheel/dcFBA-0.1.1-py3.9.egg-info 2023-11-03T20:18:42,545 running install_scripts 2023-11-03T20:18:42,558 creating build/bdist.linux-armv7l/wheel/dcFBA-0.1.1.dist-info/WHEEL 2023-11-03T20:18:42,561 creating '/tmp/pip-wheel-lw0sd7ci/.tmp-_0u5f40f/dcFBA-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-03T20:18:42,614 adding 'dcFBA/DefaultModels.py' 2023-11-03T20:18:42,624 adding 'dcFBA/Exceptions.py' 2023-11-03T20:18:42,625 adding 'dcFBA/__init__.py' 2023-11-03T20:18:42,627 adding 'dcFBA/DynamicModels/DynamicFBABase.py' 2023-11-03T20:18:42,629 adding 'dcFBA/DynamicModels/DynamicJointFBA.py' 2023-11-03T20:18:42,630 adding 'dcFBA/DynamicModels/DynamicModelBase.py' 2023-11-03T20:18:42,632 adding 'dcFBA/DynamicModels/DynamicParallelFBA.py' 2023-11-03T20:18:42,633 adding 'dcFBA/DynamicModels/DynamicSingleFBA.py' 2023-11-03T20:18:42,636 adding 'dcFBA/DynamicModels/EndPointFBA.py' 2023-11-03T20:18:42,638 adding 'dcFBA/DynamicModels/StaticOptimizationModel.py' 2023-11-03T20:18:42,639 adding 'dcFBA/DynamicModels/__init__.py' 2023-11-03T20:18:42,642 adding 'dcFBA/Helpers/BuildCommunityMatrix.py' 2023-11-03T20:18:42,644 adding 'dcFBA/Helpers/BuildEndPointModel.py' 2023-11-03T20:18:42,645 adding 'dcFBA/Helpers/KineticsReaderInterface.py' 2023-11-03T20:18:42,647 adding 'dcFBA/Helpers/OptimalSearch.py' 2023-11-03T20:18:42,648 adding 'dcFBA/Helpers/PlotsEndPointFBA.py' 2023-11-03T20:18:42,649 adding 'dcFBA/Helpers/ReduceModel.py' 2023-11-03T20:18:42,650 adding 'dcFBA/Helpers/__init__.py' 2023-11-03T20:18:42,653 adding 'dcFBA/Models/CommunityModel.py' 2023-11-03T20:18:42,654 adding 'dcFBA/Models/KineticsStruct.py' 2023-11-03T20:18:42,656 adding 'dcFBA/Models/Transporters.py' 2023-11-03T20:18:42,657 adding 'dcFBA/Models/__init__.py' 2023-11-03T20:18:42,658 adding 'dcFBA/ToyModels/__init__.py' 2023-11-03T20:18:42,660 adding 'dcFBA/ToyModels/model_a.py' 2023-11-03T20:18:42,662 adding 'dcFBA/ToyModels/model_b.py' 2023-11-03T20:18:42,663 adding 'dcFBA/ToyModels/model_c.py' 2023-11-03T20:18:42,664 adding 'dcFBA/ToyModels/model_d.py' 2023-11-03T20:18:42,666 adding 'dcFBA/ToyModels/Examples/DJFBA_example.py' 2023-11-03T20:18:42,667 adding 'dcFBA/ToyModels/Examples/DynamicSingle_example.py' 2023-11-03T20:18:42,669 adding 'dcFBA/ToyModels/Examples/EndPointFBA_example.py' 2023-11-03T20:18:42,670 adding 'dcFBA/ToyModels/Examples/Parallel_example.py' 2023-11-03T20:18:42,671 adding 'dcFBA/ToyModels/Examples/epFBA_QP_example.py' 2023-11-03T20:18:42,673 adding 'dcFBA/ToyModels/Examples/strep_test.py' 2023-11-03T20:18:42,675 adding 'dcFBA-0.1.1.dist-info/LICENSE' 2023-11-03T20:18:42,676 adding 'dcFBA-0.1.1.dist-info/METADATA' 2023-11-03T20:18:42,677 adding 'dcFBA-0.1.1.dist-info/WHEEL' 2023-11-03T20:18:42,678 adding 'dcFBA-0.1.1.dist-info/top_level.txt' 2023-11-03T20:18:42,679 adding 'dcFBA-0.1.1.dist-info/RECORD' 2023-11-03T20:18:42,683 removing build/bdist.linux-armv7l/wheel 2023-11-03T20:18:42,794 Building wheel for dcfba (pyproject.toml): finished with status 'done' 2023-11-03T20:18:42,803 Created wheel for dcfba: filename=dcFBA-0.1.1-py3-none-any.whl size=132162 sha256=e53aff15547ef18bf7b2702f5196648b0456f26fc869e82e0ea4ca0d4e983199 2023-11-03T20:18:42,804 Stored in directory: /tmp/pip-ephem-wheel-cache-lvee9h25/wheels/13/79/d1/4cc09c8ea32d971a1e09acdc7dc7e0348d2cfb650189ab8ee0 2023-11-03T20:18:42,816 Successfully built dcfba 2023-11-03T20:18:42,824 Removed build tracker: '/tmp/pip-build-tracker-muhpuawg'