2023-11-07T04:02:56,727 Created temporary directory: /tmp/pip-build-tracker-sv62c0_r 2023-11-07T04:02:56,728 Initialized build tracking at /tmp/pip-build-tracker-sv62c0_r 2023-11-07T04:02:56,728 Created build tracker: /tmp/pip-build-tracker-sv62c0_r 2023-11-07T04:02:56,728 Entered build tracker: /tmp/pip-build-tracker-sv62c0_r 2023-11-07T04:02:56,729 Created temporary directory: /tmp/pip-wheel-5suet8xa 2023-11-07T04:02:56,733 Created temporary directory: /tmp/pip-ephem-wheel-cache-y69i624g 2023-11-07T04:02:56,763 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-07T04:02:56,767 2 location(s) to search for versions of gencodegenes: 2023-11-07T04:02:56,767 * https://pypi.org/simple/gencodegenes/ 2023-11-07T04:02:56,767 * https://www.piwheels.org/simple/gencodegenes/ 2023-11-07T04:02:56,768 Fetching project page and analyzing links: https://pypi.org/simple/gencodegenes/ 2023-11-07T04:02:56,768 Getting page https://pypi.org/simple/gencodegenes/ 2023-11-07T04:02:56,770 Found index url https://pypi.org/simple/ 2023-11-07T04:02:56,821 Fetched page https://pypi.org/simple/gencodegenes/ as application/vnd.pypi.simple.v1+json 2023-11-07T04:02:56,844 Found link https://files.pythonhosted.org/packages/0d/12/072d7deae2b505465a3fb3c418776e4aa35aded87ec5e3a2dc8a256cf7e9/gencodegenes-0.9.15.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 0.9.15 2023-11-07T04:02:56,844 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/c2/c1/1eafe0aa40210568d567312798c4f38fa24e53b195d5012a481f557461bc/gencodegenes-1.0.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,844 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7b/6b/697207f48972e939877e77546f07d0e805e4b71cf8231dbdc1133d4935e3/gencodegenes-1.0.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,845 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/a0/b4/c325425663a972a8b1e077a22eac6263ce6c1ee274e43716712e2d45c6aa/gencodegenes-1.0.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,845 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7e/89/013d9d409beeb63031684a3438bfb7b3d0e484008e442a249456079ca2b3/gencodegenes-1.0.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,845 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7c/3e/f75536f9af6d7e43ecd45d117b0dabdab0b3153f85a62e3ab2760005b38b/gencodegenes-1.0.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,845 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/75/13/474f8da42875f6e6ce7e3a42ccb3b33545ecbc1cf35ab6615ea9288c1609/gencodegenes-1.0.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,845 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d7/5b/ae61ce133207b3a0eb1abc02b87c396eaa82acb645869aef05c00485fa95/gencodegenes-1.0.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,846 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/ad/1a/72bd7a3b3631920d0f1285b5f35ece5929e105cd1a9618286585efdaf634/gencodegenes-1.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,846 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/ef/cd/4caba0573155f328eec57c1f9292f6c304cdc73f25f9748bec7b5ac5e6f1/gencodegenes-1.0.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,846 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/b5/9e/6a869d5feaae0ad866993a0fa72a994d9b5003aa75baff4ae32b6f964960/gencodegenes-1.0.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,846 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d5/e6/e0b9d67a234ec753559ac8fb699edea2f0409fe7d0d1c9d9670f9b72a941/gencodegenes-1.0.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,846 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/1b/48/bdad56e24c1d9b5579d92538bb062426a50630f21cfe952a0fd943e4b176/gencodegenes-1.0.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,847 Found link https://files.pythonhosted.org/packages/9a/7c/7429bf09284e7894cc06bde4f8d85b2fa0e11890f4f0952e0b0ee48621ec/gencodegenes-1.0.0.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.0 2023-11-07T04:02:56,847 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/91/2c/e3b52307f7232511b7ee3d4ebb1bdcc2de775967d1344282212ac374f68d/gencodegenes-1.0.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,847 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/96/30/f653067a5b4e2fd097c261f3610f513493cdef4b96d0e2748280a9cc7150/gencodegenes-1.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,848 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d7/d5/2bd5e00da0059229e0e57039d09f8843298ce59b3fc980d4bf8ebe2d3f45/gencodegenes-1.0.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,848 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/52/02/1b7215ae24decb6c99bf5a9bae4f466dfaf527667b3428bf71a9fdfb9f02/gencodegenes-1.0.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,849 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/7f/e5/f976692c94179e8157d62d06f3dac895a4865a15ef13e3d8feadc5d81f4c/gencodegenes-1.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,849 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/93/77/ef25556eb2081285c643e4df43bfac47dfd690d1dc6e224b25be1e65fcf2/gencodegenes-1.0.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,849 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/79/2a/84b63fc571eac62bea42e63cfc8825c1a57d48ea19c80efc7cab3a30de64/gencodegenes-1.0.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,849 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/a4/3e/9af27184b5ef4512eaaf75baaa07608e176d11c19f1b87d91807751a5f2d/gencodegenes-1.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,849 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/58/c5/29b2e4fe4af9059fcdc8f4aa5ecfc4d29fa915c08b9a655214ffb258828d/gencodegenes-1.0.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,850 Found link https://files.pythonhosted.org/packages/ef/80/34bc48d62656740b60a3e6e0144d439b85ec909778dd2921b096b5e7b7fa/gencodegenes-1.0.1.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.1 2023-11-07T04:02:56,850 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/23/09/61815a38328403063615b7743109a5d15ee7bd726940d75c556d3af56f06/gencodegenes-1.0.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,850 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d5/2a/525890ac55cb40d082db4aec4f2016aa46ad11b981ca115bf3e5576892e5/gencodegenes-1.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,851 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/4d/67/9ee60f62eb6fb8b8df754bdb81dee51a232f2c4fefa449af5844906be6eb/gencodegenes-1.0.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,853 Found link https://files.pythonhosted.org/packages/ef/7f/b074963ece855ffe3fd31b20db987091bad17dc36143cbae6774742b4f5a/gencodegenes-1.0.2.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.2 2023-11-07T04:02:56,853 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/d7/22/73f99d4115db848db29aedd0e3cb7dcc4748760050e8e6335b23ea0f2dae/gencodegenes-1.0.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,853 Skipping link: No binaries permitted for gencodegenes: 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https://files.pythonhosted.org/packages/ae/44/62852a06cad9dffba5da7c90c4e0872d88aea9f657385402a1ea55fc9c93/gencodegenes-1.0.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,870 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/3e/2c/919c0d2b558e4970e9fe603d686e5d105aab7e769cd62341d998d859c6cb/gencodegenes-1.0.9-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,870 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/39/c8/f60899db657f4c280ae073ccaa3391f9100b487fb96932712a9096154cc6/gencodegenes-1.0.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,871 Skipping link: No binaries permitted for gencodegenes: https://files.pythonhosted.org/packages/af/b6/7168ece37a0252a702aa640fc9be47d02b7a05dc22a429b2cdfbe738019c/gencodegenes-1.0.9-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,871 Found link https://files.pythonhosted.org/packages/5a/ba/5e88133bb39bb3691ae799cbb19b8c7fb573dab9c01b43561a4f1208c824/gencodegenes-1.0.9.tar.gz (from https://pypi.org/simple/gencodegenes/) (requires-python:>=3.8), version: 1.0.9 2023-11-07T04:02:56,872 Fetching project page and analyzing links: https://www.piwheels.org/simple/gencodegenes/ 2023-11-07T04:02:56,872 Getting page https://www.piwheels.org/simple/gencodegenes/ 2023-11-07T04:02:56,873 Found index url https://www.piwheels.org/simple/ 2023-11-07T04:02:56,943 Fetched page https://www.piwheels.org/simple/gencodegenes/ as text/html 2023-11-07T04:02:56,950 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.9-cp311-cp311-linux_armv7l.whl#sha256=b17561a8b205bd9d214f121e15a90dd2ab05e759fe9283ccc41e9121edca4b90 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,950 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.9-cp311-cp311-linux_armv6l.whl#sha256=b17561a8b205bd9d214f121e15a90dd2ab05e759fe9283ccc41e9121edca4b90 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,950 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=7140593bae5cdbae9af965fa53fdffdf99d7976b62f476ae93943a7079260ddf (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,951 Skipping link: No binaries permitted for gencodegenes: 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https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp311-cp311-linux_armv7l.whl#sha256=f9da2241d3ebacc11c0bbc589cf002e28e10c23acedcc71409993e2180fb7ae0 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,953 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp311-cp311-linux_armv6l.whl#sha256=f9da2241d3ebacc11c0bbc589cf002e28e10c23acedcc71409993e2180fb7ae0 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,953 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=e6e8caec16e08255d98aedf6166847fea938122626d4e8ba1e8d0be29391624d (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,953 Skipping link: No binaries permitted for gencodegenes: 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https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=7d4f6d406625530020a94fe09af3ab9bdc5ea1d7585f3068158152e756b1bfb1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,954 Skipping link: No binaries permitted for gencodegenes: https://www.piwheels.org/simple/gencodegenes/gencodegenes-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=7d4f6d406625530020a94fe09af3ab9bdc5ea1d7585f3068158152e756b1bfb1 (from https://www.piwheels.org/simple/gencodegenes/) (requires-python:>=3.8) 2023-11-07T04:02:56,954 Skipping link: not a file: https://www.piwheels.org/simple/gencodegenes/ 2023-11-07T04:02:56,954 Skipping link: not a file: https://pypi.org/simple/gencodegenes/ 2023-11-07T04:02:56,973 Given no hashes to check 1 links for project 'gencodegenes': discarding no candidates 2023-11-07T04:02:56,990 Collecting gencodegenes==1.0.9 2023-11-07T04:02:56,992 Created temporary directory: /tmp/pip-unpack-a840i_f4 2023-11-07T04:02:57,035 Downloading gencodegenes-1.0.9.tar.gz (313 kB) 2023-11-07T04:02:57,436 Added gencodegenes==1.0.9 from https://files.pythonhosted.org/packages/5a/ba/5e88133bb39bb3691ae799cbb19b8c7fb573dab9c01b43561a4f1208c824/gencodegenes-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-sv62c0_r' 2023-11-07T04:02:57,441 Created temporary directory: /tmp/pip-build-env-56va9_ms 2023-11-07T04:02:57,451 Installing build dependencies: started 2023-11-07T04:02:57,452 Running command pip subprocess to install build dependencies 2023-11-07T04:02:58,620 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-11-07T04:02:59,158 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-07T04:03:01,470 Collecting cython 2023-11-07T04:03:01,554 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.5-cp39-cp39-linux_armv7l.whl (10.7 MB) 2023-11-07T04:03:03,428 Collecting setuptools>=40.6.0 2023-11-07T04:03:03,445 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.2.2-py3-none-any.whl (807 kB) 2023-11-07T04:03:04,803 Collecting wheel 2023-11-07T04:03:04,819 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB) 2023-11-07T04:03:06,544 Installing collected packages: wheel, setuptools, cython 2023-11-07T04:03:06,783 Creating /tmp/pip-build-env-56va9_ms/overlay/bin 2023-11-07T04:03:06,786 changing mode of /tmp/pip-build-env-56va9_ms/overlay/bin/wheel to 755 2023-11-07T04:03:16,475 changing mode of /tmp/pip-build-env-56va9_ms/overlay/bin/cygdb to 755 2023-11-07T04:03:16,478 changing mode of /tmp/pip-build-env-56va9_ms/overlay/bin/cython to 755 2023-11-07T04:03:16,481 changing mode of /tmp/pip-build-env-56va9_ms/overlay/bin/cythonize to 755 2023-11-07T04:03:16,504 Successfully installed cython-3.0.5 setuptools-68.2.2 wheel-0.41.3 2023-11-07T04:03:17,249 Installing build dependencies: finished with status 'done' 2023-11-07T04:03:17,262 Getting requirements to build wheel: started 2023-11-07T04:03:17,263 Running command Getting requirements to build wheel 2023-11-07T04:03:22,316 warning: src/gencodegenes/gencode.pyx:83:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-11-07T04:03:22,317 warning: src/gencodegenes/gencode.pyx:83:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-11-07T04:03:22,408 warning: src/gencodegenes/gencode.pyx:83:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-11-07T04:03:22,413 warning: src/gencodegenes/gencode.pyx:83:0: Global name __genome_ matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. 2023-11-07T04:03:24,215 Compiling src/gencodegenes/transcript.pyx because it depends on /tmp/pip-build-env-56va9_ms/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-11-07T04:03:24,215 Compiling src/gencodegenes/gencode.pyx because it depends on /tmp/pip-build-env-56va9_ms/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-11-07T04:03:24,216 [1/2] Cythonizing src/gencodegenes/gencode.pyx 2023-11-07T04:03:24,216 [2/2] Cythonizing src/gencodegenes/transcript.pyx 2023-11-07T04:03:24,294 running egg_info 2023-11-07T04:03:24,299 writing src/gencodegenes.egg-info/PKG-INFO 2023-11-07T04:03:24,302 writing dependency_links to src/gencodegenes.egg-info/dependency_links.txt 2023-11-07T04:03:24,304 writing requirements to src/gencodegenes.egg-info/requires.txt 2023-11-07T04:03:24,305 writing top-level names to src/gencodegenes.egg-info/top_level.txt 2023-11-07T04:03:24,350 reading manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:24,353 reading manifest template 'MANIFEST.in' 2023-11-07T04:03:24,363 adding license file 'LICENSE.txt' 2023-11-07T04:03:24,366 writing manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:24,713 Getting requirements to build wheel: finished with status 'done' 2023-11-07T04:03:24,722 Created temporary directory: /tmp/pip-modern-metadata-xdt6gche 2023-11-07T04:03:24,725 Preparing metadata (pyproject.toml): started 2023-11-07T04:03:24,726 Running command Preparing metadata (pyproject.toml) 2023-11-07T04:03:26,549 running dist_info 2023-11-07T04:03:26,572 creating /tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info 2023-11-07T04:03:26,577 writing /tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/PKG-INFO 2023-11-07T04:03:26,580 writing dependency_links to /tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/dependency_links.txt 2023-11-07T04:03:26,582 writing requirements to /tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/requires.txt 2023-11-07T04:03:26,583 writing top-level names to /tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/top_level.txt 2023-11-07T04:03:26,584 writing manifest file '/tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:26,624 reading manifest file '/tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:26,626 reading manifest template 'MANIFEST.in' 2023-11-07T04:03:26,632 adding license file 'LICENSE.txt' 2023-11-07T04:03:26,635 writing manifest file '/tmp/pip-modern-metadata-xdt6gche/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:26,636 creating '/tmp/pip-modern-metadata-xdt6gche/gencodegenes-1.0.9.dist-info' 2023-11-07T04:03:26,838 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-07T04:03:26,844 Source in /tmp/pip-wheel-5suet8xa/gencodegenes_ea7c6b0e86c44be491c5bc15c907f569 has version 1.0.9, which satisfies requirement gencodegenes==1.0.9 from https://files.pythonhosted.org/packages/5a/ba/5e88133bb39bb3691ae799cbb19b8c7fb573dab9c01b43561a4f1208c824/gencodegenes-1.0.9.tar.gz 2023-11-07T04:03:26,845 Removed gencodegenes==1.0.9 from https://files.pythonhosted.org/packages/5a/ba/5e88133bb39bb3691ae799cbb19b8c7fb573dab9c01b43561a4f1208c824/gencodegenes-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-sv62c0_r' 2023-11-07T04:03:26,852 Created temporary directory: /tmp/pip-unpack-s0jduv0w 2023-11-07T04:03:26,852 Created temporary directory: /tmp/pip-unpack-1ffpb3_r 2023-11-07T04:03:26,857 Building wheels for collected packages: gencodegenes 2023-11-07T04:03:26,861 Created temporary directory: /tmp/pip-wheel-dsybv0tn 2023-11-07T04:03:26,862 Destination directory: /tmp/pip-wheel-dsybv0tn 2023-11-07T04:03:26,864 Building wheel for gencodegenes (pyproject.toml): started 2023-11-07T04:03:26,865 Running command Building wheel for gencodegenes (pyproject.toml) 2023-11-07T04:03:28,223 running bdist_wheel 2023-11-07T04:03:28,271 running build 2023-11-07T04:03:28,271 running build_py 2023-11-07T04:03:28,279 creating build 2023-11-07T04:03:28,280 creating build/lib.linux-armv7l-cpython-39 2023-11-07T04:03:28,280 creating build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,282 copying src/gencodegenes/__init__.py -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,283 running egg_info 2023-11-07T04:03:28,288 writing src/gencodegenes.egg-info/PKG-INFO 2023-11-07T04:03:28,291 writing dependency_links to src/gencodegenes.egg-info/dependency_links.txt 2023-11-07T04:03:28,293 writing requirements to src/gencodegenes.egg-info/requires.txt 2023-11-07T04:03:28,294 writing top-level names to src/gencodegenes.egg-info/top_level.txt 2023-11-07T04:03:28,303 reading manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:28,306 reading manifest template 'MANIFEST.in' 2023-11-07T04:03:28,312 adding license file 'LICENSE.txt' 2023-11-07T04:03:28,315 writing manifest file 'src/gencodegenes.egg-info/SOURCES.txt' 2023-11-07T04:03:28,318 copying src/gencodegenes/gencode.cpp -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,342 copying src/gencodegenes/gencode.pyx -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,345 copying src/gencodegenes/transcript.cpp -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,367 copying src/gencodegenes/transcript.pxd -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,369 copying src/gencodegenes/transcript.pyx -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,372 copying src/gencodegenes/tx.cpp -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,375 copying src/gencodegenes/tx.h -> build/lib.linux-armv7l-cpython-39/gencodegenes 2023-11-07T04:03:28,378 running build_ext 2023-11-07T04:03:28,384 building 'gencodegenes.transcript' extension 2023-11-07T04:03:28,384 creating build/temp.linux-armv7l-cpython-39 2023-11-07T04:03:28,385 creating build/temp.linux-armv7l-cpython-39/src 2023-11-07T04:03:28,385 creating build/temp.linux-armv7l-cpython-39/src/gencodegenes 2023-11-07T04:03:28,387 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -I/usr/include/python3.9 -c src/gencodegenes/transcript.cpp -o build/temp.linux-armv7l-cpython-39/src/gencodegenes/transcript.o -std=c++11 -I/usr/include 2023-11-07T04:03:51,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-39/src/tx.o -std=c++11 -I/usr/include 2023-11-07T04:03:59,030 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/gencodegenes/transcript.o build/temp.linux-armv7l-cpython-39/src/tx.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.cpython-39-arm-linux-gnueabihf.so 2023-11-07T04:03:59,422 building 'gencodegenes.gencode' extension 2023-11-07T04:03:59,423 creating build/temp.linux-armv7l-cpython-39/src/gzstream 2023-11-07T04:03:59,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gencode.cpp -o build/temp.linux-armv7l-cpython-39/src/gencode.o -std=c++11 -I/usr/include 2023-11-07T04:04:12,776 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gencodegenes/gencode.cpp -o build/temp.linux-armv7l-cpython-39/src/gencodegenes/gencode.o -std=c++11 -I/usr/include 2023-11-07T04:04:45,906 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gtf.cpp -o build/temp.linux-armv7l-cpython-39/src/gtf.o -std=c++11 -I/usr/include 2023-11-07T04:04:48,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/gzstream/gzstream.C -o build/temp.linux-armv7l-cpython-39/src/gzstream/gzstream.o -std=c++11 -I/usr/include 2023-11-07T04:04:49,927 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/gencodegenes -Isrc/ -Isrc/zlib -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-cpython-39/src/tx.o -std=c++11 -I/usr/include 2023-11-07T04:04:57,117 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/gencode.o build/temp.linux-armv7l-cpython-39/src/gencodegenes/gencode.o build/temp.linux-armv7l-cpython-39/src/gtf.o build/temp.linux-armv7l-cpython-39/src/gzstream/gzstream.o build/temp.linux-armv7l-cpython-39/src/tx.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.cpython-39-arm-linux-gnueabihf.so 2023-11-07T04:04:57,690 installing to build/bdist.linux-armv7l/wheel 2023-11-07T04:04:57,691 running install 2023-11-07T04:04:57,717 running install_lib 2023-11-07T04:04:57,725 creating build/bdist.linux-armv7l 2023-11-07T04:04:57,726 creating build/bdist.linux-armv7l/wheel 2023-11-07T04:04:57,728 creating build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,729 copying build/lib.linux-armv7l-cpython-39/gencodegenes/__init__.py -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,731 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,751 copying build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,848 copying build/lib.linux-armv7l-cpython-39/gencodegenes/tx.h -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,850 copying build/lib.linux-armv7l-cpython-39/gencodegenes/tx.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,853 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,888 copying build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.cpp -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,908 copying build/lib.linux-armv7l-cpython-39/gencodegenes/gencode.pyx -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,911 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.pyx -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,914 copying build/lib.linux-armv7l-cpython-39/gencodegenes/transcript.pxd -> build/bdist.linux-armv7l/wheel/gencodegenes 2023-11-07T04:04:57,917 running install_egg_info 2023-11-07T04:04:57,931 Copying src/gencodegenes.egg-info to build/bdist.linux-armv7l/wheel/gencodegenes-1.0.9-py3.9.egg-info 2023-11-07T04:04:57,941 running install_scripts 2023-11-07T04:04:57,989 creating build/bdist.linux-armv7l/wheel/gencodegenes-1.0.9.dist-info/WHEEL 2023-11-07T04:04:57,992 creating '/tmp/pip-wheel-dsybv0tn/.tmp-zyta4r9v/gencodegenes-1.0.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-07T04:04:57,995 adding 'gencodegenes/__init__.py' 2023-11-07T04:04:58,076 adding 'gencodegenes/gencode.cpp' 2023-11-07T04:04:58,962 adding 'gencodegenes/gencode.cpython-39-arm-linux-gnueabihf.so' 2023-11-07T04:04:58,997 adding 'gencodegenes/gencode.pyx' 2023-11-07T04:04:59,066 adding 'gencodegenes/transcript.cpp' 2023-11-07T04:04:59,504 adding 'gencodegenes/transcript.cpython-39-arm-linux-gnueabihf.so' 2023-11-07T04:04:59,521 adding 'gencodegenes/transcript.pxd' 2023-11-07T04:04:59,523 adding 'gencodegenes/transcript.pyx' 2023-11-07T04:04:59,527 adding 'gencodegenes/tx.cpp' 2023-11-07T04:04:59,529 adding 'gencodegenes/tx.h' 2023-11-07T04:04:59,531 adding 'gencodegenes-1.0.9.dist-info/LICENSE.txt' 2023-11-07T04:04:59,532 adding 'gencodegenes-1.0.9.dist-info/METADATA' 2023-11-07T04:04:59,533 adding 'gencodegenes-1.0.9.dist-info/WHEEL' 2023-11-07T04:04:59,534 adding 'gencodegenes-1.0.9.dist-info/top_level.txt' 2023-11-07T04:04:59,535 adding 'gencodegenes-1.0.9.dist-info/RECORD' 2023-11-07T04:04:59,582 removing build/bdist.linux-armv7l/wheel 2023-11-07T04:04:59,713 Building wheel for gencodegenes (pyproject.toml): finished with status 'done' 2023-11-07T04:04:59,778 Created wheel for gencodegenes: filename=gencodegenes-1.0.9-cp39-cp39-linux_armv7l.whl size=2795170 sha256=d4fc563ebe9782fed3d3c7fbf60cfd9ebf192852bc25beb1610d030343e6e090 2023-11-07T04:04:59,779 Stored in directory: /tmp/pip-ephem-wheel-cache-y69i624g/wheels/05/74/d0/1f8964e0f3169c26362e44981d3553f8703b52af64d20e0d4b 2023-11-07T04:04:59,792 Successfully built gencodegenes 2023-11-07T04:04:59,859 Removed build tracker: '/tmp/pip-build-tracker-sv62c0_r'