2023-11-07T17:07:19,163 Created temporary directory: /tmp/pip-build-tracker-gxcyzzrd 2023-11-07T17:07:19,165 Initialized build tracking at /tmp/pip-build-tracker-gxcyzzrd 2023-11-07T17:07:19,165 Created build tracker: /tmp/pip-build-tracker-gxcyzzrd 2023-11-07T17:07:19,165 Entered build tracker: /tmp/pip-build-tracker-gxcyzzrd 2023-11-07T17:07:19,166 Created temporary directory: /tmp/pip-wheel-nnujuy24 2023-11-07T17:07:19,169 Created temporary directory: /tmp/pip-ephem-wheel-cache-nn8eg3jr 2023-11-07T17:07:19,191 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-07T17:07:19,195 2 location(s) to search for versions of tm-vec: 2023-11-07T17:07:19,195 * https://pypi.org/simple/tm-vec/ 2023-11-07T17:07:19,195 * https://www.piwheels.org/simple/tm-vec/ 2023-11-07T17:07:19,196 Fetching project page and analyzing links: https://pypi.org/simple/tm-vec/ 2023-11-07T17:07:19,196 Getting page https://pypi.org/simple/tm-vec/ 2023-11-07T17:07:19,198 Found index url https://pypi.org/simple/ 2023-11-07T17:07:19,418 Fetched page https://pypi.org/simple/tm-vec/ as application/vnd.pypi.simple.v1+json 2023-11-07T17:07:19,420 Found link https://files.pythonhosted.org/packages/b9/6b/bfd45c461125ce2541b96732d3d6d4cdd669910ac00b43d8db2b1a64a950/tm-vec-0.1.0.tar.gz (from https://pypi.org/simple/tm-vec/), version: 0.1.0 2023-11-07T17:07:19,421 Found link https://files.pythonhosted.org/packages/dd/47/df3ebf0ea022a48270648db9f622464ff367a919ccdfcba1d9e7e6051f09/tm-vec-1.0.0.tar.gz (from https://pypi.org/simple/tm-vec/), version: 1.0.0 2023-11-07T17:07:19,421 Found link https://files.pythonhosted.org/packages/b7/bb/dd7b1693f7aa65b0c906a085b8e283df8c48265a2d71ae65d42e5b0e092e/tm-vec-1.0.1.tar.gz (from https://pypi.org/simple/tm-vec/), version: 1.0.1 2023-11-07T17:07:19,422 Found link https://files.pythonhosted.org/packages/2d/64/3f6cf668ea6e7ee94b99e1b33deb381f1386fd508948e6b40a3b01efcc65/tm-vec-1.0.2.tar.gz (from https://pypi.org/simple/tm-vec/), version: 1.0.2 2023-11-07T17:07:19,423 Found link https://files.pythonhosted.org/packages/65/1f/8b750586df31c4771492e75eddcab70720ac5a8d4b6d367abc6e818b21ac/tm-vec-1.0.3.tar.gz (from https://pypi.org/simple/tm-vec/), version: 1.0.3 2023-11-07T17:07:19,424 Fetching project page and analyzing links: https://www.piwheels.org/simple/tm-vec/ 2023-11-07T17:07:19,424 Getting page https://www.piwheels.org/simple/tm-vec/ 2023-11-07T17:07:19,426 Found index url https://www.piwheels.org/simple/ 2023-11-07T17:07:19,595 Fetched page https://www.piwheels.org/simple/tm-vec/ as text/html 2023-11-07T17:07:19,597 Skipping link: No binaries permitted for tm-vec: https://www.piwheels.org/simple/tm-vec/tm_vec-1.0.1-py3-none-any.whl#sha256=dec0f95f8696bd93957d738e2da775b4ea5e09c57264c79a20c1957021018881 (from https://www.piwheels.org/simple/tm-vec/) 2023-11-07T17:07:19,598 Skipping link: No binaries permitted for tm-vec: https://www.piwheels.org/simple/tm-vec/tm_vec-1.0.0-py3-none-any.whl#sha256=7198434d67ab6a7b6ff10f5eea83c8f7ae052136ce68314e197c91bd93b7b906 (from https://www.piwheels.org/simple/tm-vec/) 2023-11-07T17:07:19,598 Skipping link: No binaries permitted for tm-vec: https://www.piwheels.org/simple/tm-vec/tm_vec-0.1.0-py3-none-any.whl#sha256=56568d1c2a99309008344837acac7ee08675bbe71dd51cc85c2046c5cf330127 (from https://www.piwheels.org/simple/tm-vec/) 2023-11-07T17:07:19,599 Skipping link: not a file: https://www.piwheels.org/simple/tm-vec/ 2023-11-07T17:07:19,600 Skipping link: not a file: https://pypi.org/simple/tm-vec/ 2023-11-07T17:07:19,619 Given no hashes to check 1 links for project 'tm-vec': discarding no candidates 2023-11-07T17:07:19,639 Collecting tm-vec==1.0.2 2023-11-07T17:07:19,641 Created temporary directory: /tmp/pip-unpack-v_u5vcyg 2023-11-07T17:07:19,853 Downloading tm-vec-1.0.2.tar.gz (12 kB) 2023-11-07T17:07:19,898 Added tm-vec==1.0.2 from https://files.pythonhosted.org/packages/2d/64/3f6cf668ea6e7ee94b99e1b33deb381f1386fd508948e6b40a3b01efcc65/tm-vec-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-gxcyzzrd' 2023-11-07T17:07:19,900 Running setup.py (path:/tmp/pip-wheel-nnujuy24/tm-vec_f8864d5ea0b44444be174ccb5ccfe699/setup.py) egg_info for package tm-vec 2023-11-07T17:07:19,901 Created temporary directory: /tmp/pip-pip-egg-info-ynpz014f 2023-11-07T17:07:19,902 Preparing metadata (setup.py): started 2023-11-07T17:07:19,903 Running command python setup.py egg_info 2023-11-07T17:07:20,925 running egg_info 2023-11-07T17:07:20,927 creating /tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info 2023-11-07T17:07:20,951 writing /tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/PKG-INFO 2023-11-07T17:07:20,954 writing dependency_links to /tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/dependency_links.txt 2023-11-07T17:07:20,956 writing requirements to /tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/requires.txt 2023-11-07T17:07:20,957 writing top-level names to /tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/top_level.txt 2023-11-07T17:07:20,958 writing manifest file '/tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/SOURCES.txt' 2023-11-07T17:07:21,058 reading manifest file '/tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/SOURCES.txt' 2023-11-07T17:07:21,060 adding license file 'LICENSE' 2023-11-07T17:07:21,062 writing manifest file '/tmp/pip-pip-egg-info-ynpz014f/tm_vec.egg-info/SOURCES.txt' 2023-11-07T17:07:21,169 Preparing metadata (setup.py): finished with status 'done' 2023-11-07T17:07:21,173 Source in /tmp/pip-wheel-nnujuy24/tm-vec_f8864d5ea0b44444be174ccb5ccfe699 has version 1.0.2, which satisfies requirement tm-vec==1.0.2 from https://files.pythonhosted.org/packages/2d/64/3f6cf668ea6e7ee94b99e1b33deb381f1386fd508948e6b40a3b01efcc65/tm-vec-1.0.2.tar.gz 2023-11-07T17:07:21,174 Removed tm-vec==1.0.2 from https://files.pythonhosted.org/packages/2d/64/3f6cf668ea6e7ee94b99e1b33deb381f1386fd508948e6b40a3b01efcc65/tm-vec-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-gxcyzzrd' 2023-11-07T17:07:21,178 WARNING: The candidate selected for download or install is a yanked version: 'tm-vec' candidate (version 1.0.2 at https://files.pythonhosted.org/packages/2d/64/3f6cf668ea6e7ee94b99e1b33deb381f1386fd508948e6b40a3b01efcc65/tm-vec-1.0.2.tar.gz (from https://pypi.org/simple/tm-vec/)) 2023-11-07T17:07:21,178 Reason for being yanked: 2023-11-07T17:07:21,180 Created temporary directory: /tmp/pip-unpack-ru8b_epw 2023-11-07T17:07:21,181 Created temporary directory: /tmp/pip-unpack-7w7czxhb 2023-11-07T17:07:21,193 Building wheels for collected packages: tm-vec 2023-11-07T17:07:21,197 Created temporary directory: /tmp/pip-wheel-yzpz4g2m 2023-11-07T17:07:21,198 Building wheel for tm-vec (setup.py): started 2023-11-07T17:07:21,199 Destination directory: /tmp/pip-wheel-yzpz4g2m 2023-11-07T17:07:21,199 Running command python setup.py bdist_wheel 2023-11-07T17:07:22,210 running bdist_wheel 2023-11-07T17:07:22,304 running build 2023-11-07T17:07:22,305 running build_py 2023-11-07T17:07:22,332 creating build 2023-11-07T17:07:22,332 creating build/lib 2023-11-07T17:07:22,333 creating build/lib/tm_vec 2023-11-07T17:07:22,334 copying tm_vec/__init__.py -> build/lib/tm_vec 2023-11-07T17:07:22,336 copying tm_vec/embed_structure_model.py -> build/lib/tm_vec 2023-11-07T17:07:22,338 copying tm_vec/tm_vec_utils.py -> build/lib/tm_vec 2023-11-07T17:07:22,340 copying tm_vec/train_embed_structure_model.py -> build/lib/tm_vec 2023-11-07T17:07:22,342 copying tm_vec/utils.py -> build/lib/tm_vec 2023-11-07T17:07:22,344 copying tm_vec/fasta.py -> build/lib/tm_vec 2023-11-07T17:07:22,347 copying tm_vec/data_embed_structure.py -> build/lib/tm_vec 2023-11-07T17:07:22,349 copying tm_vec/config.py -> build/lib/tm_vec 2023-11-07T17:07:22,351 running build_scripts 2023-11-07T17:07:22,352 creating build/scripts-3.11 2023-11-07T17:07:22,353 copying and adjusting scripts/build-fasta-index -> build/scripts-3.11 2023-11-07T17:07:22,354 copying and adjusting scripts/tmvec-build-database -> build/scripts-3.11 2023-11-07T17:07:22,356 copying and adjusting scripts/tmvec-search -> build/scripts-3.11 2023-11-07T17:07:22,358 changing mode of build/scripts-3.11/build-fasta-index from 644 to 755 2023-11-07T17:07:22,359 changing mode of build/scripts-3.11/tmvec-build-database from 644 to 755 2023-11-07T17:07:22,359 changing mode of build/scripts-3.11/tmvec-search from 644 to 755 2023-11-07T17:07:22,384 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-07T17:07:22,385 !! 2023-11-07T17:07:22,386 ******************************************************************************** 2023-11-07T17:07:22,386 Please avoid running ``setup.py`` directly. 2023-11-07T17:07:22,387 Instead, use pypa/build, pypa/installer or other 2023-11-07T17:07:22,387 standards-based tools. 2023-11-07T17:07:22,388 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-07T17:07:22,388 ******************************************************************************** 2023-11-07T17:07:22,389 !! 2023-11-07T17:07:22,390 self.initialize_options() 2023-11-07T17:07:22,409 installing to build/bdist.linux-armv7l/wheel 2023-11-07T17:07:22,410 running install 2023-11-07T17:07:22,434 running install_lib 2023-11-07T17:07:22,458 creating build/bdist.linux-armv7l 2023-11-07T17:07:22,458 creating build/bdist.linux-armv7l/wheel 2023-11-07T17:07:22,460 creating build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,461 copying build/lib/tm_vec/__init__.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,462 copying build/lib/tm_vec/embed_structure_model.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,464 copying build/lib/tm_vec/tm_vec_utils.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,466 copying build/lib/tm_vec/train_embed_structure_model.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,468 copying build/lib/tm_vec/utils.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,470 copying build/lib/tm_vec/fasta.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,472 copying build/lib/tm_vec/data_embed_structure.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,474 copying build/lib/tm_vec/config.py -> build/bdist.linux-armv7l/wheel/tm_vec 2023-11-07T17:07:22,476 running install_egg_info 2023-11-07T17:07:22,536 running egg_info 2023-11-07T17:07:22,561 writing tm_vec.egg-info/PKG-INFO 2023-11-07T17:07:22,564 writing dependency_links to tm_vec.egg-info/dependency_links.txt 2023-11-07T17:07:22,565 writing requirements to tm_vec.egg-info/requires.txt 2023-11-07T17:07:22,566 writing top-level names to tm_vec.egg-info/top_level.txt 2023-11-07T17:07:22,593 reading manifest file 'tm_vec.egg-info/SOURCES.txt' 2023-11-07T17:07:22,595 adding license file 'LICENSE' 2023-11-07T17:07:22,597 writing manifest file 'tm_vec.egg-info/SOURCES.txt' 2023-11-07T17:07:22,598 Copying tm_vec.egg-info to build/bdist.linux-armv7l/wheel/tm_vec-1.0.2-py3.11.egg-info 2023-11-07T17:07:22,608 running install_scripts 2023-11-07T17:07:22,609 creating build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data 2023-11-07T17:07:22,609 creating build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts 2023-11-07T17:07:22,611 copying build/scripts-3.11/tmvec-build-database -> build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts 2023-11-07T17:07:22,613 copying build/scripts-3.11/build-fasta-index -> build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts 2023-11-07T17:07:22,614 copying build/scripts-3.11/tmvec-search -> build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts 2023-11-07T17:07:22,616 changing mode of build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts/tmvec-build-database to 755 2023-11-07T17:07:22,617 changing mode of build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts/build-fasta-index to 755 2023-11-07T17:07:22,617 changing mode of build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.data/scripts/tmvec-search to 755 2023-11-07T17:07:22,632 creating build/bdist.linux-armv7l/wheel/tm_vec-1.0.2.dist-info/WHEEL 2023-11-07T17:07:22,635 creating '/tmp/pip-wheel-yzpz4g2m/tm_vec-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-07T17:07:22,637 adding 'tm_vec/__init__.py' 2023-11-07T17:07:22,638 adding 'tm_vec/config.py' 2023-11-07T17:07:22,639 adding 'tm_vec/data_embed_structure.py' 2023-11-07T17:07:22,641 adding 'tm_vec/embed_structure_model.py' 2023-11-07T17:07:22,642 adding 'tm_vec/fasta.py' 2023-11-07T17:07:22,644 adding 'tm_vec/tm_vec_utils.py' 2023-11-07T17:07:22,645 adding 'tm_vec/train_embed_structure_model.py' 2023-11-07T17:07:22,647 adding 'tm_vec/utils.py' 2023-11-07T17:07:22,649 adding 'tm_vec-1.0.2.data/scripts/build-fasta-index' 2023-11-07T17:07:22,650 adding 'tm_vec-1.0.2.data/scripts/tmvec-build-database' 2023-11-07T17:07:22,652 adding 'tm_vec-1.0.2.data/scripts/tmvec-search' 2023-11-07T17:07:22,654 adding 'tm_vec-1.0.2.dist-info/LICENSE' 2023-11-07T17:07:22,655 adding 'tm_vec-1.0.2.dist-info/METADATA' 2023-11-07T17:07:22,655 adding 'tm_vec-1.0.2.dist-info/WHEEL' 2023-11-07T17:07:22,656 adding 'tm_vec-1.0.2.dist-info/top_level.txt' 2023-11-07T17:07:22,657 adding 'tm_vec-1.0.2.dist-info/RECORD' 2023-11-07T17:07:22,659 removing build/bdist.linux-armv7l/wheel 2023-11-07T17:07:22,774 Building wheel for tm-vec (setup.py): finished with status 'done' 2023-11-07T17:07:22,777 Created wheel for tm-vec: filename=tm_vec-1.0.2-py3-none-any.whl size=15267 sha256=4f000cce9ae8f2a2d930447dea438a9b86bc4d9d6eef88e7a8c97492e4debc64 2023-11-07T17:07:22,778 Stored in directory: /tmp/pip-ephem-wheel-cache-nn8eg3jr/wheels/3f/37/b6/616a038e11836780168d3a97103ba67783372c2cea831aeb96 2023-11-07T17:07:22,788 Successfully built tm-vec 2023-11-07T17:07:22,792 Removed build tracker: '/tmp/pip-build-tracker-gxcyzzrd'