2023-11-07T17:09:30,806 Created temporary directory: /tmp/pip-build-tracker-qjhjcb8n 2023-11-07T17:09:30,807 Initialized build tracking at /tmp/pip-build-tracker-qjhjcb8n 2023-11-07T17:09:30,807 Created build tracker: /tmp/pip-build-tracker-qjhjcb8n 2023-11-07T17:09:30,808 Entered build tracker: /tmp/pip-build-tracker-qjhjcb8n 2023-11-07T17:09:30,809 Created temporary directory: /tmp/pip-wheel-h85nmgdw 2023-11-07T17:09:30,812 Created temporary directory: /tmp/pip-ephem-wheel-cache-vfdlok1v 2023-11-07T17:09:30,837 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-07T17:09:30,841 2 location(s) to search for versions of nmdc-runtime: 2023-11-07T17:09:30,841 * https://pypi.org/simple/nmdc-runtime/ 2023-11-07T17:09:30,841 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-07T17:09:30,841 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-07T17:09:30,842 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-07T17:09:30,844 Found index url https://pypi.org/simple/ 2023-11-07T17:09:31,065 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-07T17:09:31,070 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,071 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-07T17:09:31,072 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,072 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-07T17:09:31,073 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,074 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-07T17:09:31,075 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,076 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,077 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-07T17:09:31,077 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,078 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,079 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-07T17:09:31,080 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,081 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-07T17:09:31,081 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,082 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-07T17:09:31,083 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,084 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-11-07T17:09:31,085 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-07T17:09:31,085 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-07T17:09:31,086 Found index url https://www.piwheels.org/simple/ 2023-11-07T17:09:31,252 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-07T17:09:31,256 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,256 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,257 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-07T17:09:31,258 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,258 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,259 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,260 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-07T17:09:31,260 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-07T17:09:31,261 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-07T17:09:31,281 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-07T17:09:31,301 Collecting nmdc-runtime==1.0.7 2023-11-07T17:09:31,303 Created temporary directory: /tmp/pip-unpack-yi4942so 2023-11-07T17:09:31,750 Downloading nmdc_runtime-1.0.7.tar.gz (63.6 MB) 2023-11-07T17:09:47,004 Added nmdc-runtime==1.0.7 from https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-qjhjcb8n' 2023-11-07T17:09:47,006 Running setup.py (path:/tmp/pip-wheel-h85nmgdw/nmdc-runtime_38d42f07e6e14756a13ffd83e28b4275/setup.py) egg_info for package nmdc-runtime 2023-11-07T17:09:47,007 Created temporary directory: /tmp/pip-pip-egg-info-f98jjya_ 2023-11-07T17:09:47,007 Preparing metadata (setup.py): started 2023-11-07T17:09:47,009 Running command python setup.py egg_info 2023-11-07T17:09:47,714 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-07T17:09:47,715 !! 2023-11-07T17:09:47,716 ******************************************************************************** 2023-11-07T17:09:47,717 Requirements should be satisfied by a PEP 517 installer. 2023-11-07T17:09:47,717 If you are using pip, you can try `pip install --use-pep517`. 2023-11-07T17:09:47,718 ******************************************************************************** 2023-11-07T17:09:47,719 !! 2023-11-07T17:09:47,720 dist.fetch_build_eggs(dist.setup_requires) 2023-11-07T17:09:50,719 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-07T17:09:50,823 running egg_info 2023-11-07T17:09:50,824 creating /tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info 2023-11-07T17:09:50,851 writing /tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/PKG-INFO 2023-11-07T17:09:50,854 writing dependency_links to /tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/dependency_links.txt 2023-11-07T17:09:50,856 writing entry points to /tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/entry_points.txt 2023-11-07T17:09:50,857 writing top-level names to /tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/top_level.txt 2023-11-07T17:09:50,859 writing manifest file '/tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-07T17:09:51,031 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-07T17:09:51,038 reading manifest file '/tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-07T17:09:51,039 adding license file 'LICENSE' 2023-11-07T17:09:51,043 writing manifest file '/tmp/pip-pip-egg-info-f98jjya_/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-07T17:09:51,157 Preparing metadata (setup.py): finished with status 'done' 2023-11-07T17:09:51,161 Source in /tmp/pip-wheel-h85nmgdw/nmdc-runtime_38d42f07e6e14756a13ffd83e28b4275 has version 1.0.7, which satisfies requirement nmdc-runtime==1.0.7 from https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz 2023-11-07T17:09:51,162 Removed nmdc-runtime==1.0.7 from https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-qjhjcb8n' 2023-11-07T17:09:51,168 Created temporary directory: /tmp/pip-unpack-m2wpeo80 2023-11-07T17:09:51,169 Created temporary directory: /tmp/pip-unpack-qnticmen 2023-11-07T17:09:51,173 Building wheels for collected packages: nmdc-runtime 2023-11-07T17:09:51,177 Created temporary directory: /tmp/pip-wheel-_o8_fha5 2023-11-07T17:09:51,177 Building wheel for nmdc-runtime (setup.py): started 2023-11-07T17:09:51,178 Destination directory: /tmp/pip-wheel-_o8_fha5 2023-11-07T17:09:51,179 Running command python setup.py bdist_wheel 2023-11-07T17:09:51,871 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-07T17:09:51,871 !! 2023-11-07T17:09:51,872 ******************************************************************************** 2023-11-07T17:09:51,872 Requirements should be satisfied by a PEP 517 installer. 2023-11-07T17:09:51,873 If you are using pip, you can try `pip install --use-pep517`. 2023-11-07T17:09:51,873 ******************************************************************************** 2023-11-07T17:09:51,874 !! 2023-11-07T17:09:51,875 dist.fetch_build_eggs(dist.setup_requires) 2023-11-07T17:09:52,403 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-07T17:09:52,494 running bdist_wheel 2023-11-07T17:09:52,600 running build 2023-11-07T17:09:52,600 running build_py 2023-11-07T17:09:52,629 creating build 2023-11-07T17:09:52,630 creating build/lib 2023-11-07T17:09:52,631 creating build/lib/nmdc_runtime 2023-11-07T17:09:52,632 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-07T17:09:52,634 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-07T17:09:52,635 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-07T17:09:52,638 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-07T17:09:52,640 creating build/lib/nmdc_runtime/core 2023-11-07T17:09:52,641 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-07T17:09:52,643 creating build/lib/nmdc_runtime/domain 2023-11-07T17:09:52,643 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-07T17:09:52,646 creating build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,646 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,648 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,651 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,653 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,654 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,657 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-07T17:09:52,660 creating build/lib/nmdc_runtime/site 2023-11-07T17:09:52,661 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-07T17:09:52,663 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-07T17:09:52,665 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-07T17:09:52,668 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-07T17:09:52,670 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-07T17:09:52,672 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-07T17:09:52,674 creating build/lib/nmdc_runtime/infrastructure 2023-11-07T17:09:52,675 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-07T17:09:52,677 creating build/lib/nmdc_runtime/client 2023-11-07T17:09:52,678 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-07T17:09:52,681 creating build/lib/nmdc_runtime/minter 2023-11-07T17:09:52,682 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-07T17:09:52,683 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-07T17:09:52,684 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-07T17:09:52,686 creating build/lib/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,687 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,689 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,690 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,692 creating build/lib/nmdc_runtime/core/db 2023-11-07T17:09:52,693 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-07T17:09:52,694 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-07T17:09:52,696 creating build/lib/nmdc_runtime/domain/users 2023-11-07T17:09:52,697 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-07T17:09:52,699 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-07T17:09:52,700 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-07T17:09:52,702 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-07T17:09:52,704 creating build/lib/nmdc_runtime/site/backup 2023-11-07T17:09:52,705 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-07T17:09:52,706 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-07T17:09:52,708 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-07T17:09:52,710 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-07T17:09:52,712 creating build/lib/nmdc_runtime/site/validation 2023-11-07T17:09:52,713 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-07T17:09:52,714 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-07T17:09:52,716 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-07T17:09:52,717 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-07T17:09:52,719 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-07T17:09:52,721 creating build/lib/nmdc_runtime/site/export 2023-11-07T17:09:52,722 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-07T17:09:52,724 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-07T17:09:52,726 creating build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,727 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,730 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,732 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,734 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,735 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,737 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,739 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,741 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,743 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-07T17:09:52,746 creating build/lib/nmdc_runtime/site/changesheets 2023-11-07T17:09:52,746 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-07T17:09:52,748 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-07T17:09:52,750 creating build/lib/nmdc_runtime/site/normalization 2023-11-07T17:09:52,751 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-07T17:09:52,753 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-07T17:09:52,755 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-07T17:09:52,755 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-07T17:09:52,757 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-07T17:09:52,759 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-07T17:09:52,762 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-07T17:09:52,765 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-07T17:09:52,765 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-07T17:09:52,767 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-07T17:09:52,769 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-07T17:09:52,771 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-07T17:09:52,772 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-07T17:09:52,774 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-07T17:09:52,775 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-07T17:09:52,776 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-07T17:09:52,778 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-07T17:09:52,780 creating build/lib/nmdc_runtime/minter/domain 2023-11-07T17:09:52,781 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-07T17:09:52,783 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-07T17:09:52,785 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-07T17:09:52,786 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-07T17:09:52,787 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-07T17:09:52,789 creating build/lib/nmdc_runtime/minter/adapters 2023-11-07T17:09:52,790 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-07T17:09:52,792 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-07T17:09:52,832 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-07T17:09:52,833 !! 2023-11-07T17:09:52,834 ******************************************************************************** 2023-11-07T17:09:52,835 Please avoid running ``setup.py`` directly. 2023-11-07T17:09:52,835 Instead, use pypa/build, pypa/installer or other 2023-11-07T17:09:52,836 standards-based tools. 2023-11-07T17:09:52,837 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-07T17:09:52,838 ******************************************************************************** 2023-11-07T17:09:52,839 !! 2023-11-07T17:09:52,839 self.initialize_options() 2023-11-07T17:09:52,861 installing to build/bdist.linux-armv7l/wheel 2023-11-07T17:09:52,861 running install 2023-11-07T17:09:52,885 running install_lib 2023-11-07T17:09:52,912 creating build/bdist.linux-armv7l 2023-11-07T17:09:52,912 creating build/bdist.linux-armv7l/wheel 2023-11-07T17:09:52,914 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-07T17:09:52,915 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-07T17:09:52,916 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-07T17:09:52,918 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-07T17:09:52,919 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-07T17:09:52,920 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,921 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,923 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,924 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-07T17:09:52,926 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-07T17:09:52,927 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-07T17:09:52,929 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-07T17:09:52,931 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-07T17:09:52,932 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-07T17:09:52,933 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-07T17:09:52,935 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-07T17:09:52,936 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-07T17:09:52,938 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-07T17:09:52,940 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-07T17:09:52,941 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-07T17:09:52,944 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,945 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,947 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,949 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,951 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,953 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,955 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-07T17:09:52,959 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:52,960 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-07T17:09:52,961 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-07T17:09:52,963 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-07T17:09:52,965 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-07T17:09:52,967 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-07T17:09:52,970 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-07T17:09:52,971 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-07T17:09:52,973 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-07T17:09:52,974 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-07T17:09:52,976 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-07T17:09:52,977 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-07T17:09:52,979 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:52,981 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:52,984 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-07T17:09:52,984 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-07T17:09:52,986 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-07T17:09:52,988 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:52,991 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:52,992 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:52,995 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:52,998 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,000 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,001 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,003 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,005 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,007 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,009 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-07T17:09:53,012 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-07T17:09:53,013 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-07T17:09:53,015 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-07T17:09:53,017 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-07T17:09:53,018 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-07T17:09:53,020 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-07T17:09:53,022 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-07T17:09:53,023 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-07T17:09:53,025 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-07T17:09:53,027 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-07T17:09:53,031 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-07T17:09:53,032 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:53,034 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:53,036 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-07T17:09:53,039 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-07T17:09:53,039 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-07T17:09:53,041 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-07T17:09:53,043 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-07T17:09:53,045 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-07T17:09:53,046 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-07T17:09:53,048 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-07T17:09:53,049 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-07T17:09:53,051 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-07T17:09:53,052 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-07T17:09:53,053 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-07T17:09:53,055 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-07T17:09:53,057 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-07T17:09:53,059 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-07T17:09:53,060 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-07T17:09:53,062 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-07T17:09:53,063 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-07T17:09:53,065 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-07T17:09:53,066 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-07T17:09:53,068 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-07T17:09:53,069 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-07T17:09:53,071 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-07T17:09:53,072 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-07T17:09:53,074 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-07T17:09:53,076 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-07T17:09:53,077 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-07T17:09:53,079 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-07T17:09:53,081 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-07T17:09:53,082 running install_egg_info 2023-11-07T17:09:53,139 running egg_info 2023-11-07T17:09:53,167 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-07T17:09:53,170 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-07T17:09:53,172 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-07T17:09:53,173 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-07T17:09:53,275 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-07T17:09:53,278 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-07T17:09:53,336 adding license file 'LICENSE' 2023-11-07T17:09:53,352 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-07T17:09:53,354 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.7-py3.11.egg-info 2023-11-07T17:09:53,365 running install_scripts 2023-11-07T17:09:53,378 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.7.dist-info/WHEEL 2023-11-07T17:09:53,381 creating '/tmp/pip-wheel-_o8_fha5/nmdc_runtime-1.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-07T17:09:53,383 adding 'nmdc_runtime/__init__.py' 2023-11-07T17:09:53,384 adding 'nmdc_runtime/containers.py' 2023-11-07T17:09:53,385 adding 'nmdc_runtime/main.py' 2023-11-07T17:09:53,388 adding 'nmdc_runtime/util.py' 2023-11-07T17:09:53,390 adding 'nmdc_runtime/client/__init__.py' 2023-11-07T17:09:53,391 adding 'nmdc_runtime/core/__init__.py' 2023-11-07T17:09:53,393 adding 'nmdc_runtime/core/db/Database.py' 2023-11-07T17:09:53,394 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-07T17:09:53,396 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-07T17:09:53,397 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-07T17:09:53,398 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-07T17:09:53,399 adding 'nmdc_runtime/domain/__init__.py' 2023-11-07T17:09:53,401 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-07T17:09:53,402 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-07T17:09:53,403 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-07T17:09:53,404 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-07T17:09:53,406 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-07T17:09:53,408 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-07T17:09:53,409 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-07T17:09:53,411 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-07T17:09:53,412 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-07T17:09:53,413 adding 'nmdc_runtime/lib/__init__.py' 2023-11-07T17:09:53,415 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-07T17:09:53,416 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-07T17:09:53,419 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-07T17:09:53,421 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-07T17:09:53,427 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-07T17:09:53,429 adding 'nmdc_runtime/minter/__init__.py' 2023-11-07T17:09:53,430 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-07T17:09:53,431 adding 'nmdc_runtime/minter/config.py' 2023-11-07T17:09:53,433 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-07T17:09:53,434 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-07T17:09:53,436 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-07T17:09:53,437 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-07T17:09:53,439 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-07T17:09:53,440 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-07T17:09:53,442 adding 'nmdc_runtime/site/__init__.py' 2023-11-07T17:09:53,443 adding 'nmdc_runtime/site/graphs.py' 2023-11-07T17:09:53,446 adding 'nmdc_runtime/site/ops.py' 2023-11-07T17:09:53,449 adding 'nmdc_runtime/site/repository.py' 2023-11-07T17:09:53,451 adding 'nmdc_runtime/site/resources.py' 2023-11-07T17:09:53,452 adding 'nmdc_runtime/site/util.py' 2023-11-07T17:09:53,454 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-07T17:09:53,455 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-07T17:09:53,456 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-07T17:09:53,458 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-07T17:09:53,459 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-07T17:09:53,460 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-07T17:09:53,462 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-07T17:09:53,463 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-07T17:09:53,465 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-07T17:09:53,466 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-07T17:09:53,468 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-07T17:09:53,469 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-07T17:09:53,471 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-07T17:09:53,472 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-07T17:09:53,474 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-07T17:09:53,475 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-07T17:09:53,483 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-07T17:09:53,485 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-07T17:09:53,486 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-07T17:09:53,487 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-07T17:09:53,490 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-07T17:09:53,492 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-07T17:09:53,496 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-07T17:09:53,499 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-07T17:09:53,500 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-07T17:09:53,502 adding 'nmdc_runtime/site/translation/util.py' 2023-11-07T17:09:53,503 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-07T17:09:53,504 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-07T17:09:53,506 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-07T17:09:53,507 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-07T17:09:53,508 adding 'nmdc_runtime/site/validation/util.py' 2023-11-07T17:09:53,510 adding 'nmdc_runtime-1.0.7.dist-info/LICENSE' 2023-11-07T17:09:53,512 adding 'nmdc_runtime-1.0.7.dist-info/METADATA' 2023-11-07T17:09:53,513 adding 'nmdc_runtime-1.0.7.dist-info/WHEEL' 2023-11-07T17:09:53,514 adding 'nmdc_runtime-1.0.7.dist-info/entry_points.txt' 2023-11-07T17:09:53,515 adding 'nmdc_runtime-1.0.7.dist-info/top_level.txt' 2023-11-07T17:09:53,516 adding 'nmdc_runtime-1.0.7.dist-info/RECORD' 2023-11-07T17:09:53,519 removing build/bdist.linux-armv7l/wheel 2023-11-07T17:09:53,657 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-07T17:09:53,661 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.7-py3-none-any.whl size=118773 sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 2023-11-07T17:09:53,663 Stored in directory: /tmp/pip-ephem-wheel-cache-vfdlok1v/wheels/46/bd/a6/97f11a17e1ac0d037ae221f56537e6a4a9ff1ddb76f708533b 2023-11-07T17:09:53,675 Successfully built nmdc-runtime 2023-11-07T17:09:53,682 Removed build tracker: '/tmp/pip-build-tracker-qjhjcb8n'