2023-11-08T03:11:12,618 Created temporary directory: /tmp/pip-build-tracker-xedhookk 2023-11-08T03:11:12,619 Initialized build tracking at /tmp/pip-build-tracker-xedhookk 2023-11-08T03:11:12,620 Created build tracker: /tmp/pip-build-tracker-xedhookk 2023-11-08T03:11:12,620 Entered build tracker: /tmp/pip-build-tracker-xedhookk 2023-11-08T03:11:12,621 Created temporary directory: /tmp/pip-wheel-ni6_mxc5 2023-11-08T03:11:12,624 Created temporary directory: /tmp/pip-ephem-wheel-cache-z4grtglk 2023-11-08T03:11:12,646 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-08T03:11:12,650 2 location(s) to search for versions of nmdc-runtime: 2023-11-08T03:11:12,650 * https://pypi.org/simple/nmdc-runtime/ 2023-11-08T03:11:12,650 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T03:11:12,650 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-08T03:11:12,651 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-08T03:11:12,653 Found index url https://pypi.org/simple/ 2023-11-08T03:11:12,867 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-08T03:11:12,872 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:12,873 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-08T03:11:12,874 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:12,875 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-08T03:11:12,875 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:12,876 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-08T03:11:12,877 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:12,877 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:12,879 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-08T03:11:12,879 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:12,880 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:12,881 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-08T03:11:12,881 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:12,882 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-08T03:11:12,883 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:12,883 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-08T03:11:12,884 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:12,885 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-11-08T03:11:12,885 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:12,886 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-11-08T03:11:12,887 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T03:11:12,888 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T03:11:12,889 Found index url https://www.piwheels.org/simple/ 2023-11-08T03:11:13,046 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-08T03:11:13,049 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:13,050 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:13,051 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:13,051 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T03:11:13,052 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:13,053 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:13,053 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:13,054 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T03:11:13,054 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T03:11:13,055 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-08T03:11:13,076 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-08T03:11:13,095 Collecting nmdc-runtime==1.0.8 2023-11-08T03:11:13,098 Created temporary directory: /tmp/pip-unpack-l3pyj8sp 2023-11-08T03:11:13,331 Downloading nmdc_runtime-1.0.8.tar.gz (63.7 MB) 2023-11-08T03:11:27,903 Added nmdc-runtime==1.0.8 from https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-xedhookk' 2023-11-08T03:11:27,905 Running setup.py (path:/tmp/pip-wheel-ni6_mxc5/nmdc-runtime_6e1c35afb59d46608beda057086aa82e/setup.py) egg_info for package nmdc-runtime 2023-11-08T03:11:27,906 Created temporary directory: /tmp/pip-pip-egg-info-65covarl 2023-11-08T03:11:27,907 Preparing metadata (setup.py): started 2023-11-08T03:11:27,908 Running command python setup.py egg_info 2023-11-08T03:11:28,636 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-08T03:11:28,636 !! 2023-11-08T03:11:28,638 ******************************************************************************** 2023-11-08T03:11:28,638 Requirements should be satisfied by a PEP 517 installer. 2023-11-08T03:11:28,639 If you are using pip, you can try `pip install --use-pep517`. 2023-11-08T03:11:28,640 ******************************************************************************** 2023-11-08T03:11:28,641 !! 2023-11-08T03:11:28,641 dist.fetch_build_eggs(dist.setup_requires) 2023-11-08T03:11:31,716 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-08T03:11:31,815 running egg_info 2023-11-08T03:11:31,816 creating /tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info 2023-11-08T03:11:31,842 writing /tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/PKG-INFO 2023-11-08T03:11:31,846 writing dependency_links to /tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/dependency_links.txt 2023-11-08T03:11:31,847 writing entry points to /tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/entry_points.txt 2023-11-08T03:11:31,849 writing top-level names to /tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/top_level.txt 2023-11-08T03:11:31,850 writing manifest file '/tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T03:11:32,022 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-08T03:11:32,029 reading manifest file '/tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T03:11:32,030 adding license file 'LICENSE' 2023-11-08T03:11:32,034 writing manifest file '/tmp/pip-pip-egg-info-65covarl/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T03:11:32,148 Preparing metadata (setup.py): finished with status 'done' 2023-11-08T03:11:32,152 Source in /tmp/pip-wheel-ni6_mxc5/nmdc-runtime_6e1c35afb59d46608beda057086aa82e has version 1.0.8, which satisfies requirement nmdc-runtime==1.0.8 from https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz 2023-11-08T03:11:32,153 Removed nmdc-runtime==1.0.8 from https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-xedhookk' 2023-11-08T03:11:32,159 Created temporary directory: /tmp/pip-unpack-qro8lnm_ 2023-11-08T03:11:32,160 Created temporary directory: /tmp/pip-unpack-zrk1ceiu 2023-11-08T03:11:32,163 Building wheels for collected packages: nmdc-runtime 2023-11-08T03:11:32,167 Created temporary directory: /tmp/pip-wheel-a45fbalk 2023-11-08T03:11:32,167 Building wheel for nmdc-runtime (setup.py): started 2023-11-08T03:11:32,168 Destination directory: /tmp/pip-wheel-a45fbalk 2023-11-08T03:11:32,169 Running command python setup.py bdist_wheel 2023-11-08T03:11:32,865 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-08T03:11:32,866 !! 2023-11-08T03:11:32,867 ******************************************************************************** 2023-11-08T03:11:32,867 Requirements should be satisfied by a PEP 517 installer. 2023-11-08T03:11:32,868 If you are using pip, you can try `pip install --use-pep517`. 2023-11-08T03:11:32,869 ******************************************************************************** 2023-11-08T03:11:32,870 !! 2023-11-08T03:11:32,870 dist.fetch_build_eggs(dist.setup_requires) 2023-11-08T03:11:33,397 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-08T03:11:33,490 running bdist_wheel 2023-11-08T03:11:33,596 running build 2023-11-08T03:11:33,597 running build_py 2023-11-08T03:11:33,626 creating build 2023-11-08T03:11:33,627 creating build/lib 2023-11-08T03:11:33,627 creating build/lib/nmdc_runtime 2023-11-08T03:11:33,629 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-08T03:11:33,630 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-08T03:11:33,632 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-08T03:11:33,634 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-08T03:11:33,636 creating build/lib/nmdc_runtime/core 2023-11-08T03:11:33,637 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-08T03:11:33,639 creating build/lib/nmdc_runtime/domain 2023-11-08T03:11:33,640 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-08T03:11:33,642 creating build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,643 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,645 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,647 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,649 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,650 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,653 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-08T03:11:33,656 creating build/lib/nmdc_runtime/site 2023-11-08T03:11:33,657 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-08T03:11:33,659 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-08T03:11:33,661 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-08T03:11:33,664 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-08T03:11:33,665 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-08T03:11:33,667 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-08T03:11:33,670 creating build/lib/nmdc_runtime/infrastructure 2023-11-08T03:11:33,670 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-08T03:11:33,672 creating build/lib/nmdc_runtime/client 2023-11-08T03:11:33,673 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-08T03:11:33,675 creating build/lib/nmdc_runtime/minter 2023-11-08T03:11:33,676 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-08T03:11:33,677 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-08T03:11:33,679 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-08T03:11:33,681 creating build/lib/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,682 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,683 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,685 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,687 creating build/lib/nmdc_runtime/core/db 2023-11-08T03:11:33,688 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-08T03:11:33,689 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-08T03:11:33,691 creating build/lib/nmdc_runtime/domain/users 2023-11-08T03:11:33,692 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T03:11:33,694 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T03:11:33,695 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T03:11:33,697 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T03:11:33,699 creating build/lib/nmdc_runtime/site/backup 2023-11-08T03:11:33,699 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T03:11:33,701 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T03:11:33,703 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T03:11:33,705 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T03:11:33,707 creating build/lib/nmdc_runtime/site/validation 2023-11-08T03:11:33,708 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T03:11:33,709 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T03:11:33,711 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T03:11:33,712 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T03:11:33,714 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T03:11:33,716 creating build/lib/nmdc_runtime/site/export 2023-11-08T03:11:33,717 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-08T03:11:33,719 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-08T03:11:33,721 creating build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,722 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,725 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,727 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,729 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,730 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,732 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,733 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,735 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,736 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T03:11:33,739 creating build/lib/nmdc_runtime/site/changesheets 2023-11-08T03:11:33,740 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-08T03:11:33,741 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-08T03:11:33,743 creating build/lib/nmdc_runtime/site/normalization 2023-11-08T03:11:33,744 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-08T03:11:33,746 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-08T03:11:33,748 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-08T03:11:33,749 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T03:11:33,750 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T03:11:33,752 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T03:11:33,755 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T03:11:33,757 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-08T03:11:33,758 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-08T03:11:33,760 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-08T03:11:33,762 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-08T03:11:33,764 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-08T03:11:33,765 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-08T03:11:33,766 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-08T03:11:33,768 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-08T03:11:33,769 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-08T03:11:33,771 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-08T03:11:33,773 creating build/lib/nmdc_runtime/minter/domain 2023-11-08T03:11:33,774 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-08T03:11:33,776 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-08T03:11:33,778 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-08T03:11:33,779 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-08T03:11:33,780 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-08T03:11:33,782 creating build/lib/nmdc_runtime/minter/adapters 2023-11-08T03:11:33,783 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-08T03:11:33,785 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-08T03:11:33,825 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-08T03:11:33,826 !! 2023-11-08T03:11:33,827 ******************************************************************************** 2023-11-08T03:11:33,827 Please avoid running ``setup.py`` directly. 2023-11-08T03:11:33,828 Instead, use pypa/build, pypa/installer or other 2023-11-08T03:11:33,828 standards-based tools. 2023-11-08T03:11:33,829 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-08T03:11:33,829 ******************************************************************************** 2023-11-08T03:11:33,830 !! 2023-11-08T03:11:33,831 self.initialize_options() 2023-11-08T03:11:33,853 installing to build/bdist.linux-armv7l/wheel 2023-11-08T03:11:33,853 running install 2023-11-08T03:11:33,877 running install_lib 2023-11-08T03:11:33,906 creating build/bdist.linux-armv7l 2023-11-08T03:11:33,907 creating build/bdist.linux-armv7l/wheel 2023-11-08T03:11:33,908 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T03:11:33,910 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T03:11:33,911 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T03:11:33,913 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-08T03:11:33,914 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-08T03:11:33,916 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,917 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,919 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,920 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T03:11:33,923 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-08T03:11:33,923 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-08T03:11:33,925 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-08T03:11:33,927 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-08T03:11:33,929 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T03:11:33,930 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T03:11:33,931 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T03:11:33,933 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T03:11:33,935 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T03:11:33,937 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-08T03:11:33,938 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T03:11:33,942 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,943 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,945 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,948 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,950 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,952 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,954 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T03:11:33,958 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:33,959 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T03:11:33,960 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T03:11:33,961 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T03:11:33,963 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T03:11:33,965 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T03:11:33,967 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T03:11:33,968 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T03:11:33,970 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T03:11:33,971 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T03:11:33,973 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T03:11:33,975 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T03:11:33,976 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:33,978 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:33,981 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-08T03:11:33,982 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-08T03:11:33,984 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-08T03:11:33,986 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:33,989 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:33,990 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:33,993 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:33,996 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:33,997 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:33,999 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:34,001 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:34,002 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:34,004 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:34,006 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T03:11:34,009 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-08T03:11:34,010 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-08T03:11:34,011 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-08T03:11:34,013 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-08T03:11:34,014 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-08T03:11:34,015 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-08T03:11:34,017 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T03:11:34,018 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T03:11:34,020 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T03:11:34,022 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T03:11:34,025 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T03:11:34,026 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:34,028 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:34,030 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T03:11:34,033 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T03:11:34,034 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T03:11:34,035 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T03:11:34,037 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T03:11:34,039 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-08T03:11:34,040 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-08T03:11:34,043 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-08T03:11:34,044 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-08T03:11:34,046 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-08T03:11:34,048 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-08T03:11:34,049 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-08T03:11:34,050 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-08T03:11:34,052 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T03:11:34,054 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-08T03:11:34,055 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-08T03:11:34,057 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T03:11:34,058 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T03:11:34,060 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-08T03:11:34,061 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-08T03:11:34,063 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-08T03:11:34,064 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T03:11:34,066 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-08T03:11:34,067 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-08T03:11:34,068 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-08T03:11:34,070 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-08T03:11:34,071 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-08T03:11:34,072 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-08T03:11:34,074 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T03:11:34,076 running install_egg_info 2023-11-08T03:11:34,130 running egg_info 2023-11-08T03:11:34,157 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-08T03:11:34,160 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-08T03:11:34,162 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-08T03:11:34,163 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-08T03:11:34,263 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-08T03:11:34,266 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T03:11:34,321 adding license file 'LICENSE' 2023-11-08T03:11:34,337 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T03:11:34,339 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.8-py3.11.egg-info 2023-11-08T03:11:34,350 running install_scripts 2023-11-08T03:11:34,365 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.8.dist-info/WHEEL 2023-11-08T03:11:34,368 creating '/tmp/pip-wheel-a45fbalk/nmdc_runtime-1.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-08T03:11:34,370 adding 'nmdc_runtime/__init__.py' 2023-11-08T03:11:34,371 adding 'nmdc_runtime/containers.py' 2023-11-08T03:11:34,373 adding 'nmdc_runtime/main.py' 2023-11-08T03:11:34,375 adding 'nmdc_runtime/util.py' 2023-11-08T03:11:34,377 adding 'nmdc_runtime/client/__init__.py' 2023-11-08T03:11:34,379 adding 'nmdc_runtime/core/__init__.py' 2023-11-08T03:11:34,381 adding 'nmdc_runtime/core/db/Database.py' 2023-11-08T03:11:34,382 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-08T03:11:34,384 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-08T03:11:34,385 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-08T03:11:34,386 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-08T03:11:34,388 adding 'nmdc_runtime/domain/__init__.py' 2023-11-08T03:11:34,389 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-08T03:11:34,391 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-08T03:11:34,392 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-08T03:11:34,393 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-08T03:11:34,395 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-08T03:11:34,396 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-08T03:11:34,398 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-08T03:11:34,399 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-08T03:11:34,401 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-08T03:11:34,402 adding 'nmdc_runtime/lib/__init__.py' 2023-11-08T03:11:34,403 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-08T03:11:34,405 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-08T03:11:34,408 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-08T03:11:34,410 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-08T03:11:34,415 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-08T03:11:34,417 adding 'nmdc_runtime/minter/__init__.py' 2023-11-08T03:11:34,418 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-08T03:11:34,419 adding 'nmdc_runtime/minter/config.py' 2023-11-08T03:11:34,421 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-08T03:11:34,422 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-08T03:11:34,424 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-08T03:11:34,425 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-08T03:11:34,426 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-08T03:11:34,428 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-08T03:11:34,429 adding 'nmdc_runtime/site/__init__.py' 2023-11-08T03:11:34,431 adding 'nmdc_runtime/site/graphs.py' 2023-11-08T03:11:34,434 adding 'nmdc_runtime/site/ops.py' 2023-11-08T03:11:34,437 adding 'nmdc_runtime/site/repository.py' 2023-11-08T03:11:34,439 adding 'nmdc_runtime/site/resources.py' 2023-11-08T03:11:34,440 adding 'nmdc_runtime/site/util.py' 2023-11-08T03:11:34,442 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-08T03:11:34,443 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-08T03:11:34,444 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-08T03:11:34,446 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-08T03:11:34,447 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-08T03:11:34,448 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-08T03:11:34,450 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-08T03:11:34,452 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-08T03:11:34,453 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-08T03:11:34,455 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-08T03:11:34,456 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-08T03:11:34,458 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-08T03:11:34,459 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-08T03:11:34,461 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-08T03:11:34,462 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-08T03:11:34,463 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-08T03:11:34,471 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-08T03:11:34,473 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-08T03:11:34,475 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-08T03:11:34,476 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-08T03:11:34,479 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-08T03:11:34,480 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-08T03:11:34,484 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-08T03:11:34,488 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-08T03:11:34,489 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-08T03:11:34,490 adding 'nmdc_runtime/site/translation/util.py' 2023-11-08T03:11:34,492 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-08T03:11:34,493 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-08T03:11:34,495 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-08T03:11:34,496 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-08T03:11:34,497 adding 'nmdc_runtime/site/validation/util.py' 2023-11-08T03:11:34,499 adding 'nmdc_runtime-1.0.8.dist-info/LICENSE' 2023-11-08T03:11:34,501 adding 'nmdc_runtime-1.0.8.dist-info/METADATA' 2023-11-08T03:11:34,502 adding 'nmdc_runtime-1.0.8.dist-info/WHEEL' 2023-11-08T03:11:34,503 adding 'nmdc_runtime-1.0.8.dist-info/entry_points.txt' 2023-11-08T03:11:34,504 adding 'nmdc_runtime-1.0.8.dist-info/top_level.txt' 2023-11-08T03:11:34,505 adding 'nmdc_runtime-1.0.8.dist-info/RECORD' 2023-11-08T03:11:34,508 removing build/bdist.linux-armv7l/wheel 2023-11-08T03:11:34,647 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-08T03:11:34,651 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.8-py3-none-any.whl size=118773 sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa 2023-11-08T03:11:34,652 Stored in directory: /tmp/pip-ephem-wheel-cache-z4grtglk/wheels/a3/c0/0f/91b5c67b9ada5ce60982f1ea086f3fffd7fc47e4328603a1b4 2023-11-08T03:11:34,664 Successfully built nmdc-runtime 2023-11-08T03:11:34,670 Removed build tracker: '/tmp/pip-build-tracker-xedhookk'