2023-11-08T06:52:50,862 Created temporary directory: /tmp/pip-build-tracker-p6e2nb1j 2023-11-08T06:52:50,864 Initialized build tracking at /tmp/pip-build-tracker-p6e2nb1j 2023-11-08T06:52:50,864 Created build tracker: /tmp/pip-build-tracker-p6e2nb1j 2023-11-08T06:52:50,865 Entered build tracker: /tmp/pip-build-tracker-p6e2nb1j 2023-11-08T06:52:50,866 Created temporary directory: /tmp/pip-wheel-afwyytbc 2023-11-08T06:52:50,869 Created temporary directory: /tmp/pip-ephem-wheel-cache-omhwbp9n 2023-11-08T06:52:50,893 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-08T06:52:50,897 2 location(s) to search for versions of nmdc-runtime: 2023-11-08T06:52:50,897 * https://pypi.org/simple/nmdc-runtime/ 2023-11-08T06:52:50,897 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T06:52:50,898 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-08T06:52:50,899 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-08T06:52:50,900 Found index url https://pypi.org/simple/ 2023-11-08T06:52:51,116 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-08T06:52:51,121 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,122 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-08T06:52:51,122 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,123 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-08T06:52:51,124 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,125 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-08T06:52:51,126 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,127 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,128 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-08T06:52:51,128 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,129 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,130 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-08T06:52:51,131 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,132 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-08T06:52:51,132 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,133 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-08T06:52:51,134 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,135 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-11-08T06:52:51,136 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,137 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-11-08T06:52:51,137 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,138 Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9 2023-11-08T06:52:51,139 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T06:52:51,140 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T06:52:51,141 Found index url https://www.piwheels.org/simple/ 2023-11-08T06:52:51,300 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-08T06:52:51,303 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,304 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,305 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,306 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,306 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-08T06:52:51,307 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,307 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,307 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,308 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-08T06:52:51,309 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-08T06:52:51,309 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-08T06:52:51,331 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-08T06:52:51,351 Collecting nmdc-runtime==1.0.9 2023-11-08T06:52:51,353 Created temporary directory: /tmp/pip-unpack-togl9krc 2023-11-08T06:52:51,574 Downloading nmdc_runtime-1.0.9.tar.gz (63.7 MB) 2023-11-08T06:53:06,271 Added nmdc-runtime==1.0.9 from https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-p6e2nb1j' 2023-11-08T06:53:06,274 Running setup.py (path:/tmp/pip-wheel-afwyytbc/nmdc-runtime_32f172a5ae81460aba518e6a2e5390d7/setup.py) egg_info for package nmdc-runtime 2023-11-08T06:53:06,275 Created temporary directory: /tmp/pip-pip-egg-info-2jtry5p_ 2023-11-08T06:53:06,276 Preparing metadata (setup.py): started 2023-11-08T06:53:06,277 Running command python setup.py egg_info 2023-11-08T06:53:07,031 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-08T06:53:07,031 !! 2023-11-08T06:53:07,033 ******************************************************************************** 2023-11-08T06:53:07,033 Requirements should be satisfied by a PEP 517 installer. 2023-11-08T06:53:07,034 If you are using pip, you can try `pip install --use-pep517`. 2023-11-08T06:53:07,035 ******************************************************************************** 2023-11-08T06:53:07,036 !! 2023-11-08T06:53:07,037 dist.fetch_build_eggs(dist.setup_requires) 2023-11-08T06:53:10,153 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-08T06:53:10,257 running egg_info 2023-11-08T06:53:10,258 creating /tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info 2023-11-08T06:53:10,288 writing /tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/PKG-INFO 2023-11-08T06:53:10,291 writing dependency_links to /tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/dependency_links.txt 2023-11-08T06:53:10,293 writing entry points to /tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/entry_points.txt 2023-11-08T06:53:10,294 writing top-level names to /tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/top_level.txt 2023-11-08T06:53:10,296 writing manifest file '/tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T06:53:10,487 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-08T06:53:10,493 reading manifest file '/tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T06:53:10,495 adding license file 'LICENSE' 2023-11-08T06:53:10,499 writing manifest file '/tmp/pip-pip-egg-info-2jtry5p_/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T06:53:10,615 Preparing metadata (setup.py): finished with status 'done' 2023-11-08T06:53:10,619 Source in /tmp/pip-wheel-afwyytbc/nmdc-runtime_32f172a5ae81460aba518e6a2e5390d7 has version 1.0.9, which satisfies requirement nmdc-runtime==1.0.9 from https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz 2023-11-08T06:53:10,620 Removed nmdc-runtime==1.0.9 from https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-p6e2nb1j' 2023-11-08T06:53:10,626 Created temporary directory: /tmp/pip-unpack-6x3edu83 2023-11-08T06:53:10,627 Created temporary directory: /tmp/pip-unpack-44qa_p6e 2023-11-08T06:53:10,630 Building wheels for collected packages: nmdc-runtime 2023-11-08T06:53:10,635 Created temporary directory: /tmp/pip-wheel-d_m09lvu 2023-11-08T06:53:10,636 Building wheel for nmdc-runtime (setup.py): started 2023-11-08T06:53:10,637 Destination directory: /tmp/pip-wheel-d_m09lvu 2023-11-08T06:53:10,638 Running command python setup.py bdist_wheel 2023-11-08T06:53:11,375 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-08T06:53:11,376 !! 2023-11-08T06:53:11,377 ******************************************************************************** 2023-11-08T06:53:11,377 Requirements should be satisfied by a PEP 517 installer. 2023-11-08T06:53:11,378 If you are using pip, you can try `pip install --use-pep517`. 2023-11-08T06:53:11,379 ******************************************************************************** 2023-11-08T06:53:11,380 !! 2023-11-08T06:53:11,380 dist.fetch_build_eggs(dist.setup_requires) 2023-11-08T06:53:11,926 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-08T06:53:12,022 running bdist_wheel 2023-11-08T06:53:12,132 running build 2023-11-08T06:53:12,133 running build_py 2023-11-08T06:53:12,164 creating build 2023-11-08T06:53:12,164 creating build/lib 2023-11-08T06:53:12,165 creating build/lib/nmdc_runtime 2023-11-08T06:53:12,167 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-08T06:53:12,168 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-08T06:53:12,170 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-08T06:53:12,172 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-08T06:53:12,174 creating build/lib/nmdc_runtime/client 2023-11-08T06:53:12,175 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-08T06:53:12,178 creating build/lib/nmdc_runtime/minter 2023-11-08T06:53:12,179 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-08T06:53:12,180 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-08T06:53:12,182 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-08T06:53:12,184 creating build/lib/nmdc_runtime/domain 2023-11-08T06:53:12,185 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-08T06:53:12,187 creating build/lib/nmdc_runtime/infrastructure 2023-11-08T06:53:12,188 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-08T06:53:12,190 creating build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,191 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,194 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,196 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,199 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,202 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,203 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-08T06:53:12,207 creating build/lib/nmdc_runtime/site 2023-11-08T06:53:12,207 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-08T06:53:12,209 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-08T06:53:12,211 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-08T06:53:12,213 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-08T06:53:12,216 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-08T06:53:12,219 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-08T06:53:12,221 creating build/lib/nmdc_runtime/core 2023-11-08T06:53:12,222 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-08T06:53:12,224 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-08T06:53:12,225 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-08T06:53:12,227 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-08T06:53:12,229 creating build/lib/nmdc_runtime/minter/domain 2023-11-08T06:53:12,230 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-08T06:53:12,232 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-08T06:53:12,235 creating build/lib/nmdc_runtime/minter/adapters 2023-11-08T06:53:12,236 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-08T06:53:12,238 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-08T06:53:12,241 creating build/lib/nmdc_runtime/domain/users 2023-11-08T06:53:12,242 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T06:53:12,244 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T06:53:12,246 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T06:53:12,249 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-08T06:53:12,251 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-08T06:53:12,253 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-08T06:53:12,254 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-08T06:53:12,257 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-08T06:53:12,258 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-08T06:53:12,260 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-08T06:53:12,263 creating build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,264 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,266 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,268 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,271 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,273 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,276 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,279 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,281 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,284 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-08T06:53:12,287 creating build/lib/nmdc_runtime/site/backup 2023-11-08T06:53:12,288 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T06:53:12,290 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T06:53:12,292 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T06:53:12,295 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-08T06:53:12,297 creating build/lib/nmdc_runtime/site/changesheets 2023-11-08T06:53:12,298 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-08T06:53:12,300 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-08T06:53:12,307 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,308 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,314 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,316 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,319 creating build/lib/nmdc_runtime/site/validation 2023-11-08T06:53:12,320 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T06:53:12,322 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T06:53:12,324 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T06:53:12,326 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T06:53:12,328 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-08T06:53:12,330 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,331 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,333 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,336 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,340 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,342 creating build/lib/nmdc_runtime/site/normalization 2023-11-08T06:53:12,344 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-08T06:53:12,345 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-08T06:53:12,348 creating build/lib/nmdc_runtime/site/export 2023-11-08T06:53:12,349 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-08T06:53:12,351 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-08T06:53:12,353 creating build/lib/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,354 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,356 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,359 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,361 creating build/lib/nmdc_runtime/core/db 2023-11-08T06:53:12,362 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-08T06:53:12,364 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-08T06:53:12,407 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-08T06:53:12,408 !! 2023-11-08T06:53:12,409 ******************************************************************************** 2023-11-08T06:53:12,409 Please avoid running ``setup.py`` directly. 2023-11-08T06:53:12,410 Instead, use pypa/build, pypa/installer or other 2023-11-08T06:53:12,410 standards-based tools. 2023-11-08T06:53:12,411 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-08T06:53:12,412 ******************************************************************************** 2023-11-08T06:53:12,413 !! 2023-11-08T06:53:12,414 self.initialize_options() 2023-11-08T06:53:12,435 installing to build/bdist.linux-armv7l/wheel 2023-11-08T06:53:12,436 running install 2023-11-08T06:53:12,459 running install_lib 2023-11-08T06:53:12,487 creating build/bdist.linux-armv7l 2023-11-08T06:53:12,487 creating build/bdist.linux-armv7l/wheel 2023-11-08T06:53:12,489 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T06:53:12,490 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T06:53:12,491 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T06:53:12,493 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T06:53:12,496 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-08T06:53:12,496 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-08T06:53:12,499 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T06:53:12,500 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-08T06:53:12,501 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-08T06:53:12,503 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-08T06:53:12,505 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T06:53:12,507 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-08T06:53:12,508 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-08T06:53:12,509 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-08T06:53:12,511 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-08T06:53:12,512 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-08T06:53:12,514 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-08T06:53:12,516 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T06:53:12,518 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-08T06:53:12,520 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-08T06:53:12,522 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-08T06:53:12,522 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-08T06:53:12,524 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T06:53:12,525 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T06:53:12,527 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T06:53:12,528 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T06:53:12,530 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-08T06:53:12,532 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-08T06:53:12,533 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-08T06:53:12,535 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-08T06:53:12,536 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-08T06:53:12,537 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-08T06:53:12,538 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-08T06:53:12,540 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-08T06:53:12,542 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-08T06:53:12,544 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,545 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,547 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,548 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,551 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,554 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,556 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-08T06:53:12,559 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,560 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,562 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,565 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,566 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,568 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,570 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,572 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,574 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,577 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,579 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,581 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,583 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-08T06:53:12,585 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T06:53:12,586 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T06:53:12,588 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T06:53:12,590 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T06:53:12,591 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-08T06:53:12,594 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,596 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-08T06:53:12,597 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-08T06:53:12,599 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-08T06:53:12,601 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,602 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,604 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,605 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-08T06:53:12,607 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,610 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T06:53:12,611 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T06:53:12,613 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T06:53:12,615 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T06:53:12,617 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T06:53:12,619 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-08T06:53:12,621 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,622 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,623 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,626 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,629 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-08T06:53:12,631 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-08T06:53:12,632 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-08T06:53:12,633 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-08T06:53:12,635 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,638 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-08T06:53:12,639 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-08T06:53:12,641 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-08T06:53:12,642 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-08T06:53:12,645 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-08T06:53:12,646 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-08T06:53:12,648 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,648 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,650 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,652 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-08T06:53:12,655 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-08T06:53:12,656 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-08T06:53:12,658 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-08T06:53:12,660 running install_egg_info 2023-11-08T06:53:12,717 running egg_info 2023-11-08T06:53:12,743 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-08T06:53:12,747 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-08T06:53:12,749 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-08T06:53:12,751 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-08T06:53:12,854 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-08T06:53:12,857 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T06:53:12,924 adding license file 'LICENSE' 2023-11-08T06:53:12,941 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-08T06:53:12,943 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.9-py3.11.egg-info 2023-11-08T06:53:12,955 running install_scripts 2023-11-08T06:53:12,971 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.9.dist-info/WHEEL 2023-11-08T06:53:12,974 creating '/tmp/pip-wheel-d_m09lvu/nmdc_runtime-1.0.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-08T06:53:12,976 adding 'nmdc_runtime/__init__.py' 2023-11-08T06:53:12,978 adding 'nmdc_runtime/containers.py' 2023-11-08T06:53:12,979 adding 'nmdc_runtime/main.py' 2023-11-08T06:53:12,981 adding 'nmdc_runtime/util.py' 2023-11-08T06:53:12,983 adding 'nmdc_runtime/client/__init__.py' 2023-11-08T06:53:12,985 adding 'nmdc_runtime/core/__init__.py' 2023-11-08T06:53:12,987 adding 'nmdc_runtime/core/db/Database.py' 2023-11-08T06:53:12,988 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-08T06:53:12,990 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-08T06:53:12,992 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-08T06:53:12,993 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-08T06:53:12,994 adding 'nmdc_runtime/domain/__init__.py' 2023-11-08T06:53:12,996 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-08T06:53:12,997 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-08T06:53:12,998 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-08T06:53:12,999 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-08T06:53:13,001 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-08T06:53:13,002 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-08T06:53:13,003 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-08T06:53:13,005 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-08T06:53:13,006 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-08T06:53:13,007 adding 'nmdc_runtime/lib/__init__.py' 2023-11-08T06:53:13,008 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-08T06:53:13,010 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-08T06:53:13,014 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-08T06:53:13,016 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-08T06:53:13,021 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-08T06:53:13,023 adding 'nmdc_runtime/minter/__init__.py' 2023-11-08T06:53:13,024 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-08T06:53:13,025 adding 'nmdc_runtime/minter/config.py' 2023-11-08T06:53:13,027 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-08T06:53:13,028 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-08T06:53:13,030 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-08T06:53:13,031 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-08T06:53:13,033 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-08T06:53:13,034 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-08T06:53:13,036 adding 'nmdc_runtime/site/__init__.py' 2023-11-08T06:53:13,037 adding 'nmdc_runtime/site/graphs.py' 2023-11-08T06:53:13,041 adding 'nmdc_runtime/site/ops.py' 2023-11-08T06:53:13,044 adding 'nmdc_runtime/site/repository.py' 2023-11-08T06:53:13,046 adding 'nmdc_runtime/site/resources.py' 2023-11-08T06:53:13,048 adding 'nmdc_runtime/site/util.py' 2023-11-08T06:53:13,049 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-08T06:53:13,051 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-08T06:53:13,052 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-08T06:53:13,054 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-08T06:53:13,055 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-08T06:53:13,057 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-08T06:53:13,059 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-08T06:53:13,060 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-08T06:53:13,061 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-08T06:53:13,063 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-08T06:53:13,065 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-08T06:53:13,066 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-08T06:53:13,068 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-08T06:53:13,069 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-08T06:53:13,071 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-08T06:53:13,072 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-08T06:53:13,080 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-08T06:53:13,083 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-08T06:53:13,084 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-08T06:53:13,085 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-08T06:53:13,088 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-08T06:53:13,090 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-08T06:53:13,094 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-08T06:53:13,097 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-08T06:53:13,099 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-08T06:53:13,100 adding 'nmdc_runtime/site/translation/util.py' 2023-11-08T06:53:13,102 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-08T06:53:13,103 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-08T06:53:13,104 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-08T06:53:13,105 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-08T06:53:13,107 adding 'nmdc_runtime/site/validation/util.py' 2023-11-08T06:53:13,109 adding 'nmdc_runtime-1.0.9.dist-info/LICENSE' 2023-11-08T06:53:13,111 adding 'nmdc_runtime-1.0.9.dist-info/METADATA' 2023-11-08T06:53:13,112 adding 'nmdc_runtime-1.0.9.dist-info/WHEEL' 2023-11-08T06:53:13,113 adding 'nmdc_runtime-1.0.9.dist-info/entry_points.txt' 2023-11-08T06:53:13,114 adding 'nmdc_runtime-1.0.9.dist-info/top_level.txt' 2023-11-08T06:53:13,115 adding 'nmdc_runtime-1.0.9.dist-info/RECORD' 2023-11-08T06:53:13,118 removing build/bdist.linux-armv7l/wheel 2023-11-08T06:53:13,264 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-08T06:53:13,268 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.9-py3-none-any.whl size=118775 sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e 2023-11-08T06:53:13,270 Stored in directory: /tmp/pip-ephem-wheel-cache-omhwbp9n/wheels/1e/f2/d6/c9b570d53c34ebe1b9b00c50dd08b6d0c574377f26641dd47f 2023-11-08T06:53:13,283 Successfully built nmdc-runtime 2023-11-08T06:53:13,290 Removed build tracker: '/tmp/pip-build-tracker-p6e2nb1j'