2023-11-23T06:24:48,646 Created temporary directory: /tmp/pip-build-tracker-79mk39dw
2023-11-23T06:24:48,647 Initialized build tracking at /tmp/pip-build-tracker-79mk39dw
2023-11-23T06:24:48,648 Created build tracker: /tmp/pip-build-tracker-79mk39dw
2023-11-23T06:24:48,648 Entered build tracker: /tmp/pip-build-tracker-79mk39dw
2023-11-23T06:24:48,649 Created temporary directory: /tmp/pip-wheel-mjz55djg
2023-11-23T06:24:48,653 Created temporary directory: /tmp/pip-ephem-wheel-cache-1xu476yq
2023-11-23T06:24:48,675 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-23T06:24:48,678 2 location(s) to search for versions of singlem:
2023-11-23T06:24:48,678 * https://pypi.org/simple/singlem/
2023-11-23T06:24:48,678 * https://www.piwheels.org/simple/singlem/
2023-11-23T06:24:48,679 Fetching project page and analyzing links: https://pypi.org/simple/singlem/
2023-11-23T06:24:48,680 Getting page https://pypi.org/simple/singlem/
2023-11-23T06:24:48,681 Found index url https://pypi.org/simple/
2023-11-23T06:24:48,947 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json
2023-11-23T06:24:48,953   Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1
2023-11-23T06:24:48,953   Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0
2023-11-23T06:24:48,954   Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1
2023-11-23T06:24:48,955   Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2
2023-11-23T06:24:48,955   Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0
2023-11-23T06:24:48,956   Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0
2023-11-23T06:24:48,957   Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0
2023-11-23T06:24:48,957   Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1
2023-11-23T06:24:48,958   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,959   Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0
2023-11-23T06:24:48,959   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,960   Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1
2023-11-23T06:24:48,961   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,961   Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2
2023-11-23T06:24:48,962   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,963   Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0
2023-11-23T06:24:48,963   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,964   Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0
2023-11-23T06:24:48,964   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/fc/16/ea6f071e069d735d896eec440e65fdeaf88d69123893b1e7198bde08ba5e/singlem-0.15.1-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,965   Found link https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.1
2023-11-23T06:24:48,965   Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/)
2023-11-23T06:24:48,966   Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8
2023-11-23T06:24:48,967 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/
2023-11-23T06:24:48,967 Getting page https://www.piwheels.org/simple/singlem/
2023-11-23T06:24:48,969 Found index url https://www.piwheels.org/simple/
2023-11-23T06:24:49,151 Fetched page https://www.piwheels.org/simple/singlem/ as text/html
2023-11-23T06:24:49,155   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,156   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.0-py3-none-any.whl#sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,156   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,157   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,157   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,158   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,159   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,159   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,160   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,160   Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/)
2023-11-23T06:24:49,161 Skipping link: not a file: https://www.piwheels.org/simple/singlem/
2023-11-23T06:24:49,161 Skipping link: not a file: https://pypi.org/simple/singlem/
2023-11-23T06:24:49,183 Given no hashes to check 1 links for project 'singlem': discarding no candidates
2023-11-23T06:24:49,202 Collecting singlem==0.15.1
2023-11-23T06:24:49,204   Created temporary directory: /tmp/pip-unpack-kgk71z26
2023-11-23T06:24:49,522   Downloading singlem-0.15.1.tar.gz (172 kB)
2023-11-23T06:24:49,746   Added singlem==0.15.1 from https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz to build tracker '/tmp/pip-build-tracker-79mk39dw'
2023-11-23T06:24:49,748   Running setup.py (path:/tmp/pip-wheel-mjz55djg/singlem_1d7e31f2b20b4b0b9209a3c17c2b2d9b/setup.py) egg_info for package singlem
2023-11-23T06:24:49,749   Created temporary directory: /tmp/pip-pip-egg-info-qnmeisbf
2023-11-23T06:24:49,750   Preparing metadata (setup.py): started
2023-11-23T06:24:49,751   Running command python setup.py egg_info
2023-11-23T06:24:50,775   running egg_info
2023-11-23T06:24:50,777   creating /tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info
2023-11-23T06:24:50,801   writing /tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/PKG-INFO
2023-11-23T06:24:50,805   writing dependency_links to /tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/dependency_links.txt
2023-11-23T06:24:50,807   writing requirements to /tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/requires.txt
2023-11-23T06:24:50,808   writing top-level names to /tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/top_level.txt
2023-11-23T06:24:50,810   writing manifest file '/tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/SOURCES.txt'
2023-11-23T06:24:50,916   reading manifest file '/tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/SOURCES.txt'
2023-11-23T06:24:50,917   reading manifest template 'MANIFEST.in'
2023-11-23T06:24:50,919   warning: no files found matching 'LICENSE'
2023-11-23T06:24:50,920   warning: no previously-included files matching '*' found under directory 'test'
2023-11-23T06:24:50,920   adding license file 'LICENCE.txt'
2023-11-23T06:24:50,923   writing manifest file '/tmp/pip-pip-egg-info-qnmeisbf/singlem.egg-info/SOURCES.txt'
2023-11-23T06:24:51,033   Preparing metadata (setup.py): finished with status 'done'
2023-11-23T06:24:51,037   Source in /tmp/pip-wheel-mjz55djg/singlem_1d7e31f2b20b4b0b9209a3c17c2b2d9b has version 0.15.1, which satisfies requirement singlem==0.15.1 from https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz
2023-11-23T06:24:51,038   Removed singlem==0.15.1 from https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz from build tracker '/tmp/pip-build-tracker-79mk39dw'
2023-11-23T06:24:51,043 Created temporary directory: /tmp/pip-unpack-ueq8ufyb
2023-11-23T06:24:51,044 Created temporary directory: /tmp/pip-unpack-l02w5tx5
2023-11-23T06:24:51,060 Building wheels for collected packages: singlem
2023-11-23T06:24:51,065   Created temporary directory: /tmp/pip-wheel-uqbuoe22
2023-11-23T06:24:51,066   Building wheel for singlem (setup.py): started
2023-11-23T06:24:51,067   Destination directory: /tmp/pip-wheel-uqbuoe22
2023-11-23T06:24:51,067   Running command python setup.py bdist_wheel
2023-11-23T06:24:52,066   running bdist_wheel
2023-11-23T06:24:52,161   running build
2023-11-23T06:24:52,161   running build_py
2023-11-23T06:24:52,189   creating build
2023-11-23T06:24:52,189   creating build/lib
2023-11-23T06:24:52,190   creating build/lib/singlem
2023-11-23T06:24:52,192   copying singlem/__init__.py -> build/lib/singlem
2023-11-23T06:24:52,194   copying singlem/clusterer.py -> build/lib/singlem
2023-11-23T06:24:52,196   copying singlem/singlem_package.py -> build/lib/singlem
2023-11-23T06:24:52,198   copying singlem/pipe.py -> build/lib/singlem
2023-11-23T06:24:52,202   copying singlem/metagenome_otu_finder.py -> build/lib/singlem
2023-11-23T06:24:52,204   copying singlem/run_via_os_system.py -> build/lib/singlem
2023-11-23T06:24:52,206   copying singlem/otu_table_collection.py -> build/lib/singlem
2023-11-23T06:24:52,209   copying singlem/condense.py -> build/lib/singlem
2023-11-23T06:24:52,211   copying singlem/kingfisher_sra.py -> build/lib/singlem
2023-11-23T06:24:52,214   copying singlem/chainsaw.py -> build/lib/singlem
2023-11-23T06:24:52,216   copying singlem/otu_table.py -> build/lib/singlem
2023-11-23T06:24:52,218   copying singlem/taxonomy.py -> build/lib/singlem
2023-11-23T06:24:52,220   copying singlem/orf_length_checker.py -> build/lib/singlem
2023-11-23T06:24:52,222   copying singlem/querier.py -> build/lib/singlem
2023-11-23T06:24:52,224   copying singlem/metapackage_read_name_store.py -> build/lib/singlem
2023-11-23T06:24:52,226   copying singlem/sequence_database.py -> build/lib/singlem
2023-11-23T06:24:52,229   copying singlem/package_creator.py -> build/lib/singlem
2023-11-23T06:24:52,231   copying singlem/archive_otu_table.py -> build/lib/singlem
2023-11-23T06:24:52,234   copying singlem/appraisal_result.py -> build/lib/singlem
2023-11-23T06:24:52,236   copying singlem/ordered_set.py -> build/lib/singlem
2023-11-23T06:24:52,238   copying singlem/singlem.py -> build/lib/singlem
2023-11-23T06:24:52,239   copying singlem/otu_table_entry.py -> build/lib/singlem
2023-11-23T06:24:52,241   copying singlem/rarefier.py -> build/lib/singlem
2023-11-23T06:24:52,243   copying singlem/graftm_result.py -> build/lib/singlem
2023-11-23T06:24:52,244   copying singlem/sequence_classes.py -> build/lib/singlem
2023-11-23T06:24:52,246   copying singlem/sequence_extractor.py -> build/lib/singlem
2023-11-23T06:24:52,248   copying singlem/supplement.py -> build/lib/singlem
2023-11-23T06:24:52,251   copying singlem/placement_parser.py -> build/lib/singlem
2023-11-23T06:24:52,253   copying singlem/taxonomy_bihash.py -> build/lib/singlem
2023-11-23T06:24:52,255   copying singlem/diamond_spkg_searcher.py -> build/lib/singlem
2023-11-23T06:24:52,257   copying singlem/renew.py -> build/lib/singlem
2023-11-23T06:24:52,259   copying singlem/query_formatters.py -> build/lib/singlem
2023-11-23T06:24:52,261   copying singlem/known_otu_table.py -> build/lib/singlem
2023-11-23T06:24:52,263   copying singlem/strain_summariser.py -> build/lib/singlem
2023-11-23T06:24:52,265   copying singlem/read_fraction.py -> build/lib/singlem
2023-11-23T06:24:52,267   copying singlem/trim_package_hmms.py -> build/lib/singlem
2023-11-23T06:24:52,269   copying singlem/summariser.py -> build/lib/singlem
2023-11-23T06:24:52,272   copying singlem/genome_size.py -> build/lib/singlem
2023-11-23T06:24:52,274   copying singlem/streaming_hmm_search_result.py -> build/lib/singlem
2023-11-23T06:24:52,275   copying singlem/dereplicator.py -> build/lib/singlem
2023-11-23T06:24:52,277   copying singlem/regenerator.py -> build/lib/singlem
2023-11-23T06:24:52,279   copying singlem/appraiser.py -> build/lib/singlem
2023-11-23T06:24:52,282   copying singlem/version.py -> build/lib/singlem
2023-11-23T06:24:52,283   copying singlem/singlem_database_models.py -> build/lib/singlem
2023-11-23T06:24:52,285   copying singlem/metapackage.py -> build/lib/singlem
2023-11-23T06:24:52,288   copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem
2023-11-23T06:24:52,290   copying singlem/checkm2.py -> build/lib/singlem
2023-11-23T06:24:52,293   copying singlem/diamond_parser.py -> build/lib/singlem
2023-11-23T06:24:52,294   copying singlem/pipe_sequence_extractor.py -> build/lib/singlem
2023-11-23T06:24:52,298   creating build/lib/singlem/biolib_lite
2023-11-23T06:24:52,299   copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,301   copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,303   copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,305   copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,307   copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,309   copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,312   copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,315   copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,317   copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,319   copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,321   copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite
2023-11-23T06:24:52,323   running egg_info
2023-11-23T06:24:52,380   writing singlem.egg-info/PKG-INFO
2023-11-23T06:24:52,383   writing dependency_links to singlem.egg-info/dependency_links.txt
2023-11-23T06:24:52,384   writing requirements to singlem.egg-info/requires.txt
2023-11-23T06:24:52,385   writing top-level names to singlem.egg-info/top_level.txt
2023-11-23T06:24:52,415   reading manifest file 'singlem.egg-info/SOURCES.txt'
2023-11-23T06:24:52,418   reading manifest template 'MANIFEST.in'
2023-11-23T06:24:52,419   warning: no files found matching 'LICENSE'
2023-11-23T06:24:52,419   warning: no previously-included files matching '*' found under directory 'test'
2023-11-23T06:24:52,420   adding license file 'LICENCE.txt'
2023-11-23T06:24:52,423   writing manifest file 'singlem.egg-info/SOURCES.txt'
2023-11-23T06:24:52,428   running build_scripts
2023-11-23T06:24:52,429   creating build/scripts-3.11
2023-11-23T06:24:52,430   copying and adjusting bin/singlem -> build/scripts-3.11
2023-11-23T06:24:52,435   changing mode of build/scripts-3.11/singlem from 644 to 755
2023-11-23T06:24:52,458   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-11-23T06:24:52,459   !!

2023-11-23T06:24:52,460           ********************************************************************************
2023-11-23T06:24:52,461           Please avoid running ``setup.py`` directly.
2023-11-23T06:24:52,461           Instead, use pypa/build, pypa/installer or other
2023-11-23T06:24:52,462           standards-based tools.

2023-11-23T06:24:52,463           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-11-23T06:24:52,464           ********************************************************************************

2023-11-23T06:24:52,465   !!
2023-11-23T06:24:52,465     self.initialize_options()
2023-11-23T06:24:52,486   installing to build/bdist.linux-armv7l/wheel
2023-11-23T06:24:52,486   running install
2023-11-23T06:24:52,510   running install_lib
2023-11-23T06:24:52,535   creating build/bdist.linux-armv7l
2023-11-23T06:24:52,536   creating build/bdist.linux-armv7l/wheel
2023-11-23T06:24:52,538   creating build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,540   copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,542   copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,544   copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,547   copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,551   copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,553   copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,556   creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,557   copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,559   copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,561   copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,563   copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,566   copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,568   copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,571   copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,574   copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,576   copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,578   copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,580   copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite
2023-11-23T06:24:52,583   copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,585   copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,589   copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,591   copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,594   copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,596   copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,598   copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,600   copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,603   copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,605   copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,609   copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,611   copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,613   copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,616   copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,618   copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,620   copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,622   copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,624   copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,626   copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,628   copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,630   copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,633   copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,636   copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,638   copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,640   copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,642   copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,644   copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,646   copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,649   copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,651   copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,653   copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,656   copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,658   copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,660   copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,662   copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,664   copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,667   copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,669   copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,671   copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,674   copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,677   copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,679   copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,681   copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem
2023-11-23T06:24:52,683   running install_data
2023-11-23T06:24:52,707   creating build/bdist.linux-armv7l/wheel/singlem-0.15.1.data
2023-11-23T06:24:52,708   creating build/bdist.linux-armv7l/wheel/singlem-0.15.1.data/data
2023-11-23T06:24:52,710   copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.15.1.data/data/.
2023-11-23T06:24:52,712   copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.15.1.data/data/.
2023-11-23T06:24:52,715   running install_egg_info
2023-11-23T06:24:52,745   Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.15.1-py3.11.egg-info
2023-11-23T06:24:52,755   running install_scripts
2023-11-23T06:24:52,757   creating build/bdist.linux-armv7l/wheel/singlem-0.15.1.data/scripts
2023-11-23T06:24:52,758   copying build/scripts-3.11/singlem -> build/bdist.linux-armv7l/wheel/singlem-0.15.1.data/scripts
2023-11-23T06:24:52,762   changing mode of build/bdist.linux-armv7l/wheel/singlem-0.15.1.data/scripts/singlem to 755
2023-11-23T06:24:52,778   creating build/bdist.linux-armv7l/wheel/singlem-0.15.1.dist-info/WHEEL
2023-11-23T06:24:52,781   creating '/tmp/pip-wheel-uqbuoe22/singlem-0.15.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-23T06:24:52,784   adding 'singlem/__init__.py'
2023-11-23T06:24:52,788   adding 'singlem/appraisal_result.py'
2023-11-23T06:24:52,791   adding 'singlem/appraiser.py'
2023-11-23T06:24:52,793   adding 'singlem/archive_otu_table.py'
2023-11-23T06:24:52,795   adding 'singlem/chainsaw.py'
2023-11-23T06:24:52,797   adding 'singlem/checkm2.py'
2023-11-23T06:24:52,799   adding 'singlem/clusterer.py'
2023-11-23T06:24:52,805   adding 'singlem/condense.py'
2023-11-23T06:24:52,807   adding 'singlem/dereplicator.py'
2023-11-23T06:24:52,809   adding 'singlem/diamond_parser.py'
2023-11-23T06:24:52,811   adding 'singlem/diamond_spkg_searcher.py'
2023-11-23T06:24:52,813   adding 'singlem/genome_size.py'
2023-11-23T06:24:52,814   adding 'singlem/graftm_result.py'
2023-11-23T06:24:52,816   adding 'singlem/kingfisher_sra.py'
2023-11-23T06:24:52,818   adding 'singlem/known_otu_table.py'
2023-11-23T06:24:52,820   adding 'singlem/metagenome_otu_finder.py'
2023-11-23T06:24:52,823   adding 'singlem/metapackage.py'
2023-11-23T06:24:52,825   adding 'singlem/metapackage_read_name_store.py'
2023-11-23T06:24:52,827   adding 'singlem/ordered_set.py'
2023-11-23T06:24:52,828   adding 'singlem/orf_length_checker.py'
2023-11-23T06:24:52,830   adding 'singlem/otu_table.py'
2023-11-23T06:24:52,832   adding 'singlem/otu_table_collection.py'
2023-11-23T06:24:52,834   adding 'singlem/otu_table_entry.py'
2023-11-23T06:24:52,836   adding 'singlem/package_creator.py'
2023-11-23T06:24:52,846   adding 'singlem/pipe.py'
2023-11-23T06:24:52,850   adding 'singlem/pipe_sequence_extractor.py'
2023-11-23T06:24:52,853   adding 'singlem/pipe_taxonomy_assigner_by_query.py'
2023-11-23T06:24:52,855   adding 'singlem/placement_parser.py'
2023-11-23T06:24:52,859   adding 'singlem/querier.py'
2023-11-23T06:24:52,861   adding 'singlem/query_formatters.py'
2023-11-23T06:24:52,863   adding 'singlem/rarefier.py'
2023-11-23T06:24:52,865   adding 'singlem/read_fraction.py'
2023-11-23T06:24:52,867   adding 'singlem/regenerator.py'
2023-11-23T06:24:52,869   adding 'singlem/renew.py'
2023-11-23T06:24:52,871   adding 'singlem/run_via_os_system.py'
2023-11-23T06:24:52,873   adding 'singlem/sequence_classes.py'
2023-11-23T06:24:52,878   adding 'singlem/sequence_database.py'
2023-11-23T06:24:52,880   adding 'singlem/sequence_extractor.py'
2023-11-23T06:24:52,882   adding 'singlem/singlem.py'
2023-11-23T06:24:52,883   adding 'singlem/singlem_database_models.py'
2023-11-23T06:24:52,886   adding 'singlem/singlem_package.py'
2023-11-23T06:24:52,888   adding 'singlem/strain_summariser.py'
2023-11-23T06:24:52,890   adding 'singlem/streaming_hmm_search_result.py'
2023-11-23T06:24:52,893   adding 'singlem/summariser.py'
2023-11-23T06:24:52,898   adding 'singlem/supplement.py'
2023-11-23T06:24:52,900   adding 'singlem/taxonomy.py'
2023-11-23T06:24:52,902   adding 'singlem/taxonomy_bihash.py'
2023-11-23T06:24:52,904   adding 'singlem/trim_package_hmms.py'
2023-11-23T06:24:52,905   adding 'singlem/version.py'
2023-11-23T06:24:52,907   adding 'singlem/biolib_lite/__init__.py'
2023-11-23T06:24:52,909   adding 'singlem/biolib_lite/common.py'
2023-11-23T06:24:52,911   adding 'singlem/biolib_lite/custom_help_formatter.py'
2023-11-23T06:24:52,913   adding 'singlem/biolib_lite/exceptions.py'
2023-11-23T06:24:52,915   adding 'singlem/biolib_lite/execute.py'
2023-11-23T06:24:52,917   adding 'singlem/biolib_lite/logger.py'
2023-11-23T06:24:52,919   adding 'singlem/biolib_lite/newick.py'
2023-11-23T06:24:52,921   adding 'singlem/biolib_lite/parallel.py'
2023-11-23T06:24:52,923   adding 'singlem/biolib_lite/prodigal_biolib.py'
2023-11-23T06:24:52,926   adding 'singlem/biolib_lite/seq_io.py'
2023-11-23T06:24:52,929   adding 'singlem/biolib_lite/taxonomy.py'
2023-11-23T06:24:52,937   adding 'singlem-0.15.1.data/data/LICENCE.txt'
2023-11-23T06:24:52,939   adding 'singlem-0.15.1.data/data/README.md'
2023-11-23T06:24:52,949   adding 'singlem-0.15.1.data/scripts/singlem'
2023-11-23T06:24:52,956   adding 'singlem-0.15.1.dist-info/LICENCE.txt'
2023-11-23T06:24:52,958   adding 'singlem-0.15.1.dist-info/METADATA'
2023-11-23T06:24:52,960   adding 'singlem-0.15.1.dist-info/WHEEL'
2023-11-23T06:24:52,961   adding 'singlem-0.15.1.dist-info/top_level.txt'
2023-11-23T06:24:52,963   adding 'singlem-0.15.1.dist-info/RECORD'
2023-11-23T06:24:52,968   removing build/bdist.linux-armv7l/wheel
2023-11-23T06:24:53,098   Building wheel for singlem (setup.py): finished with status 'done'
2023-11-23T06:24:53,103   Created wheel for singlem: filename=singlem-0.15.1-py3-none-any.whl size=207941 sha256=4cc1d3a1e437383de7a99970d08e9abdd2633314cf3a06760f8822d81533f512
2023-11-23T06:24:53,105   Stored in directory: /tmp/pip-ephem-wheel-cache-1xu476yq/wheels/8b/71/05/a5777c5565355dbddb80fd6fb0118739f86b5709245b04d2ec
2023-11-23T06:24:53,117 Successfully built singlem
2023-11-23T06:24:53,128 Removed build tracker: '/tmp/pip-build-tracker-79mk39dw'