2023-11-23T20:24:37,899 Created temporary directory: /tmp/pip-build-tracker-1xwv4ydi 2023-11-23T20:24:37,900 Initialized build tracking at /tmp/pip-build-tracker-1xwv4ydi 2023-11-23T20:24:37,900 Created build tracker: /tmp/pip-build-tracker-1xwv4ydi 2023-11-23T20:24:37,901 Entered build tracker: /tmp/pip-build-tracker-1xwv4ydi 2023-11-23T20:24:37,902 Created temporary directory: /tmp/pip-wheel-jfprt65t 2023-11-23T20:24:37,905 Created temporary directory: /tmp/pip-ephem-wheel-cache-x60af447 2023-11-23T20:24:37,928 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-23T20:24:37,932 2 location(s) to search for versions of witch-msa: 2023-11-23T20:24:37,932 * https://pypi.org/simple/witch-msa/ 2023-11-23T20:24:37,932 * https://www.piwheels.org/simple/witch-msa/ 2023-11-23T20:24:37,932 Fetching project page and analyzing links: https://pypi.org/simple/witch-msa/ 2023-11-23T20:24:37,933 Getting page https://pypi.org/simple/witch-msa/ 2023-11-23T20:24:37,935 Found index url https://pypi.org/simple/ 2023-11-23T20:24:38,228 Fetched page https://pypi.org/simple/witch-msa/ as application/vnd.pypi.simple.v1+json 2023-11-23T20:24:38,231 Found link https://files.pythonhosted.org/packages/9f/57/80dd0c29162c6b84cd017182095b5cb2aa4dc11260bbae056f3ef0351943/witch-msa-1.0.0rc1.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.0rc1 2023-11-23T20:24:38,232 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/43/78/272d4d835763bc77476391081248647987723a7b0226719cd93618a44b8a/witch_msa-1.0.0rc1-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2023-11-23T20:24:38,233 Found link https://files.pythonhosted.org/packages/04/42/abe66ef86387d93b5b0bc9f23ec71b3660310d62820b56cb6315b13db266/witch-msa-1.0.0rc3.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.0rc3 2023-11-23T20:24:38,234 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/d5/e8/f939cdd95425dcd48632cc7a2fdaa939beabfed6d2004dff600c8afc0be1/witch_msa-1.0.0rc3-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2023-11-23T20:24:38,235 Found link https://files.pythonhosted.org/packages/18/10/e568ef8fa1a5a231130cc83c420b1bed9bf69ceaf17911f5b45f67496b39/witch-msa-1.0.0rc4.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.0rc4 2023-11-23T20:24:38,235 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/de/20/c1d8c0f03fe35ea092495a73a29d3bca6a94ea55ea917d04b73cc7582215/witch_msa-1.0.0rc4-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2023-11-23T20:24:38,236 Found link https://files.pythonhosted.org/packages/19/e6/150568e28ab0565dd78080eba70d4d2254038ef55327b82919e5915c6101/witch-msa-1.0.1.tar.gz (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7), version: 1.0.1 2023-11-23T20:24:38,237 Skipping link: No binaries permitted for witch-msa: https://files.pythonhosted.org/packages/6a/bf/e791b97aa9ff2e5592b40328ac11461a5dae4ecd40e175d1349be75cf37a/witch_msa-1.0.1-py3-none-any.whl (from https://pypi.org/simple/witch-msa/) (requires-python:>=3.7) 2023-11-23T20:24:38,238 Fetching project page and analyzing links: https://www.piwheels.org/simple/witch-msa/ 2023-11-23T20:24:38,239 Getting page https://www.piwheels.org/simple/witch-msa/ 2023-11-23T20:24:38,240 Found index url https://www.piwheels.org/simple/ 2023-11-23T20:24:38,404 Fetched page https://www.piwheels.org/simple/witch-msa/ as text/html 2023-11-23T20:24:38,405 Skipping link: not a file: https://www.piwheels.org/simple/witch-msa/ 2023-11-23T20:24:38,406 Skipping link: not a file: https://pypi.org/simple/witch-msa/ 2023-11-23T20:24:38,426 Given no hashes to check 1 links for project 'witch-msa': discarding no candidates 2023-11-23T20:24:38,446 Collecting witch-msa==1.0.0rc1 2023-11-23T20:24:38,448 Created temporary directory: /tmp/pip-unpack-bzls3fzq 2023-11-23T20:24:38,903 Downloading witch-msa-1.0.0rc1.tar.gz (32.5 MB) 2023-11-23T20:24:51,052 Added witch-msa==1.0.0rc1 from https://files.pythonhosted.org/packages/9f/57/80dd0c29162c6b84cd017182095b5cb2aa4dc11260bbae056f3ef0351943/witch-msa-1.0.0rc1.tar.gz to build tracker '/tmp/pip-build-tracker-1xwv4ydi' 2023-11-23T20:24:51,056 Created temporary directory: /tmp/pip-build-env-yhzwm1sx 2023-11-23T20:24:51,060 Installing build dependencies: started 2023-11-23T20:24:51,061 Running command pip subprocess to install build dependencies 2023-11-23T20:24:52,233 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-23T20:24:52,743 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-23T20:24:54,304 Collecting setuptools 2023-11-23T20:24:54,305 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl.metadata 2023-11-23T20:24:54,311 Using cached setuptools-69.0.2-py3-none-any.whl.metadata (6.3 kB) 2023-11-23T20:24:54,480 Using cached setuptools-69.0.2-py3-none-any.whl (819 kB) 2023-11-23T20:24:56,952 Installing collected packages: setuptools 2023-11-23T20:24:59,252 Successfully installed setuptools-69.0.2 2023-11-23T20:24:59,524 [notice] A new release of pip is available: 23.2.1 -> 23.3.1 2023-11-23T20:24:59,525 [notice] To update, run: python3 -m pip install --upgrade pip 2023-11-23T20:24:59,788 Installing build dependencies: finished with status 'done' 2023-11-23T20:24:59,792 Getting requirements to build wheel: started 2023-11-23T20:24:59,793 Running command Getting requirements to build wheel 2023-11-23T20:25:00,569 System is Linux-6.1.21-v7l+-armv7l-with-glibc2.36, using default config as main.config... 2023-11-23T20:25:00,569 Detecting existing software from the user's environment... 2023-11-23T20:25:00,570 mafft: None 2023-11-23T20:25:00,570 mcl: None 2023-11-23T20:25:00,571 hmmsearch: None 2023-11-23T20:25:00,572 hmmalign: None 2023-11-23T20:25:00,572 hmmbuild: None 2023-11-23T20:25:00,573 FastTreeMP: None 2023-11-23T20:25:00,574 (Done) main.config written to /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config 2023-11-23T20:25:00,574 If you would like to make manual changes, please directly edit /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config 2023-11-23T20:25:00,575 running egg_info 2023-11-23T20:25:00,575 writing witch_msa.egg-info/PKG-INFO 2023-11-23T20:25:00,578 writing dependency_links to witch_msa.egg-info/dependency_links.txt 2023-11-23T20:25:00,580 writing requirements to witch_msa.egg-info/requires.txt 2023-11-23T20:25:00,581 writing top-level names to witch_msa.egg-info/top_level.txt 2023-11-23T20:25:00,599 reading manifest file 'witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:00,620 reading manifest template 'MANIFEST.in' 2023-11-23T20:25:00,639 no previously-included directories found matching 'examples/scenario*_output*' 2023-11-23T20:25:00,640 no previously-included directories found matching 'examples/data2' 2023-11-23T20:25:00,641 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-11-23T20:25:00,642 adding license file 'LICENSE' 2023-11-23T20:25:00,650 writing manifest file 'witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:00,767 Getting requirements to build wheel: finished with status 'done' 2023-11-23T20:25:00,775 Installing backend dependencies: started 2023-11-23T20:25:00,776 Running command pip subprocess to install backend dependencies 2023-11-23T20:25:01,919 Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-23T20:25:02,423 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-23T20:25:02,940 Collecting wheel 2023-11-23T20:25:02,956 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB) 2023-11-23T20:25:05,183 Installing collected packages: wheel 2023-11-23T20:25:05,410 Creating /tmp/pip-build-env-yhzwm1sx/normal/local/bin 2023-11-23T20:25:05,412 changing mode of /tmp/pip-build-env-yhzwm1sx/normal/local/bin/wheel to 755 2023-11-23T20:25:05,424 Successfully installed wheel-0.41.3 2023-11-23T20:25:05,699 [notice] A new release of pip is available: 23.2.1 -> 23.3.1 2023-11-23T20:25:05,700 [notice] To update, run: python3 -m pip install --upgrade pip 2023-11-23T20:25:05,927 Installing backend dependencies: finished with status 'done' 2023-11-23T20:25:05,928 Created temporary directory: /tmp/pip-modern-metadata-svm5magu 2023-11-23T20:25:05,931 Preparing metadata (pyproject.toml): started 2023-11-23T20:25:05,932 Running command Preparing metadata (pyproject.toml) 2023-11-23T20:25:06,756 Main configuration file /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config exists... 2023-11-23T20:25:06,756 Overwriting existing configuration file... 2023-11-23T20:25:06,758 System is Linux-6.1.21-v7l+-armv7l-with-glibc2.36, using default config as main.config... 2023-11-23T20:25:06,758 Detecting existing software from the user's environment... 2023-11-23T20:25:06,759 mafft: None 2023-11-23T20:25:06,759 mcl: None 2023-11-23T20:25:06,760 hmmsearch: None 2023-11-23T20:25:06,760 hmmalign: None 2023-11-23T20:25:06,761 hmmbuild: None 2023-11-23T20:25:06,761 FastTreeMP: None 2023-11-23T20:25:06,762 (Done) main.config written to /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config 2023-11-23T20:25:06,763 If you would like to make manual changes, please directly edit /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config 2023-11-23T20:25:06,763 running dist_info 2023-11-23T20:25:06,763 creating /tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info 2023-11-23T20:25:06,765 writing /tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/PKG-INFO 2023-11-23T20:25:06,769 writing dependency_links to /tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/dependency_links.txt 2023-11-23T20:25:06,771 writing requirements to /tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/requires.txt 2023-11-23T20:25:06,772 writing top-level names to /tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/top_level.txt 2023-11-23T20:25:06,774 writing manifest file '/tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:06,794 reading manifest file '/tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:06,796 reading manifest template 'MANIFEST.in' 2023-11-23T20:25:06,824 no previously-included directories found matching 'examples/scenario*_output*' 2023-11-23T20:25:06,824 no previously-included directories found matching 'examples/data2' 2023-11-23T20:25:06,825 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-11-23T20:25:06,826 adding license file 'LICENSE' 2023-11-23T20:25:06,831 writing manifest file '/tmp/pip-modern-metadata-svm5magu/witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:06,833 creating '/tmp/pip-modern-metadata-svm5magu/witch_msa-1.0.0rc1.dist-info' 2023-11-23T20:25:06,986 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-23T20:25:06,998 Source in /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478 has version 1.0.0rc1, which satisfies requirement witch-msa==1.0.0rc1 from https://files.pythonhosted.org/packages/9f/57/80dd0c29162c6b84cd017182095b5cb2aa4dc11260bbae056f3ef0351943/witch-msa-1.0.0rc1.tar.gz 2023-11-23T20:25:06,999 Removed witch-msa==1.0.0rc1 from https://files.pythonhosted.org/packages/9f/57/80dd0c29162c6b84cd017182095b5cb2aa4dc11260bbae056f3ef0351943/witch-msa-1.0.0rc1.tar.gz from build tracker '/tmp/pip-build-tracker-1xwv4ydi' 2023-11-23T20:25:07,019 Created temporary directory: /tmp/pip-unpack-_t2d5w9t 2023-11-23T20:25:07,020 Created temporary directory: /tmp/pip-unpack-vxzz9fwz 2023-11-23T20:25:07,050 Building wheels for collected packages: witch-msa 2023-11-23T20:25:07,056 Created temporary directory: /tmp/pip-wheel-aljia4o6 2023-11-23T20:25:07,057 Destination directory: /tmp/pip-wheel-aljia4o6 2023-11-23T20:25:07,059 Building wheel for witch-msa (pyproject.toml): started 2023-11-23T20:25:07,061 Running command Building wheel for witch-msa (pyproject.toml) 2023-11-23T20:25:07,841 Main configuration file /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config exists... 2023-11-23T20:25:07,841 Overwriting existing configuration file... 2023-11-23T20:25:07,843 System is Linux-6.1.21-v7l+-armv7l-with-glibc2.36, using default config as main.config... 2023-11-23T20:25:07,844 Detecting existing software from the user's environment... 2023-11-23T20:25:07,844 mafft: None 2023-11-23T20:25:07,845 mcl: None 2023-11-23T20:25:07,845 hmmsearch: None 2023-11-23T20:25:07,846 hmmalign: None 2023-11-23T20:25:07,846 hmmbuild: None 2023-11-23T20:25:07,847 FastTreeMP: None 2023-11-23T20:25:07,848 (Done) main.config written to /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config 2023-11-23T20:25:07,848 If you would like to make manual changes, please directly edit /tmp/pip-wheel-jfprt65t/witch-msa_a7edbce851ef46cbac4367c2ff52c478/main.config 2023-11-23T20:25:07,849 running bdist_wheel 2023-11-23T20:25:07,858 running build 2023-11-23T20:25:07,859 running build_py 2023-11-23T20:25:07,863 creating build 2023-11-23T20:25:07,864 creating build/lib 2023-11-23T20:25:07,864 creating build/lib/gcmm 2023-11-23T20:25:07,865 copying gcmm/__init__.py -> build/lib/gcmm 2023-11-23T20:25:07,867 copying gcmm/backbone.py -> build/lib/gcmm 2023-11-23T20:25:07,870 copying gcmm/tree.py -> build/lib/gcmm 2023-11-23T20:25:07,872 copying gcmm/callback.py -> build/lib/gcmm 2023-11-23T20:25:07,874 copying gcmm/results_handler.py -> build/lib/gcmm 2023-11-23T20:25:07,876 copying gcmm/loader.py -> build/lib/gcmm 2023-11-23T20:25:07,879 copying gcmm/aligner.py -> build/lib/gcmm 2023-11-23T20:25:07,882 copying gcmm/merger.py -> build/lib/gcmm 2023-11-23T20:25:07,884 copying gcmm/decompose_tree.py -> build/lib/gcmm 2023-11-23T20:25:07,886 copying gcmm/gcmm.py -> build/lib/gcmm 2023-11-23T20:25:07,888 copying gcmm/configs.py -> build/lib/gcmm 2023-11-23T20:25:07,891 copying gcmm/algorithm.py -> build/lib/gcmm 2023-11-23T20:25:07,894 copying gcmm/task.py -> build/lib/gcmm 2023-11-23T20:25:07,896 copying gcmm/weighting.py -> build/lib/gcmm 2023-11-23T20:25:07,899 creating build/lib/helpers 2023-11-23T20:25:07,900 copying helpers/__init__.py -> build/lib/helpers 2023-11-23T20:25:07,902 copying helpers/general_tools.py -> build/lib/helpers 2023-11-23T20:25:07,903 copying helpers/pyhmmer_tools.py -> build/lib/helpers 2023-11-23T20:25:07,905 copying helpers/alignment_tools.py -> build/lib/helpers 2023-11-23T20:25:07,908 copying helpers/math_utils.py -> build/lib/helpers 2023-11-23T20:25:07,910 creating build/lib/tests 2023-11-23T20:25:07,911 copying tests/__init__.py -> build/lib/tests 2023-11-23T20:25:07,913 copying tests/test_pipeline.py -> build/lib/tests 2023-11-23T20:25:07,914 running egg_info 2023-11-23T20:25:07,917 writing witch_msa.egg-info/PKG-INFO 2023-11-23T20:25:07,921 writing dependency_links to witch_msa.egg-info/dependency_links.txt 2023-11-23T20:25:07,923 writing requirements to witch_msa.egg-info/requires.txt 2023-11-23T20:25:07,924 writing top-level names to witch_msa.egg-info/top_level.txt 2023-11-23T20:25:07,933 reading manifest file 'witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:07,938 reading manifest template 'MANIFEST.in' 2023-11-23T20:25:07,950 no previously-included directories found matching 'examples/scenario*_output*' 2023-11-23T20:25:07,951 no previously-included directories found matching 'examples/data2' 2023-11-23T20:25:07,952 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-11-23T20:25:07,952 adding license file 'LICENSE' 2023-11-23T20:25:07,959 writing manifest file 'witch_msa.egg-info/SOURCES.txt' 2023-11-23T20:25:07,969 running build_scripts 2023-11-23T20:25:07,970 creating build/scripts-3.11 2023-11-23T20:25:07,970 copying and adjusting witch.py -> build/scripts-3.11 2023-11-23T20:25:07,972 changing mode of build/scripts-3.11/witch.py from 644 to 755 2023-11-23T20:25:07,978 installing to build/bdist.linux-armv7l/wheel 2023-11-23T20:25:07,979 running install 2023-11-23T20:25:08,003 running install_lib 2023-11-23T20:25:08,007 creating build/bdist.linux-armv7l 2023-11-23T20:25:08,007 creating build/bdist.linux-armv7l/wheel 2023-11-23T20:25:08,009 creating build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,010 copying build/lib/gcmm/__init__.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,011 copying build/lib/gcmm/backbone.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,014 copying build/lib/gcmm/tree.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,016 copying build/lib/gcmm/callback.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,018 copying build/lib/gcmm/results_handler.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,020 copying build/lib/gcmm/loader.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,023 copying build/lib/gcmm/aligner.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,025 copying build/lib/gcmm/merger.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,027 copying build/lib/gcmm/decompose_tree.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,029 copying build/lib/gcmm/gcmm.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,031 copying build/lib/gcmm/configs.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,034 copying build/lib/gcmm/algorithm.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,036 copying build/lib/gcmm/task.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,039 copying build/lib/gcmm/weighting.py -> build/bdist.linux-armv7l/wheel/gcmm 2023-11-23T20:25:08,041 creating build/bdist.linux-armv7l/wheel/helpers 2023-11-23T20:25:08,042 copying build/lib/helpers/__init__.py -> build/bdist.linux-armv7l/wheel/helpers 2023-11-23T20:25:08,044 copying build/lib/helpers/general_tools.py -> build/bdist.linux-armv7l/wheel/helpers 2023-11-23T20:25:08,046 copying build/lib/helpers/pyhmmer_tools.py -> build/bdist.linux-armv7l/wheel/helpers 2023-11-23T20:25:08,048 copying build/lib/helpers/alignment_tools.py -> build/bdist.linux-armv7l/wheel/helpers 2023-11-23T20:25:08,051 copying build/lib/helpers/math_utils.py -> build/bdist.linux-armv7l/wheel/helpers 2023-11-23T20:25:08,053 creating build/bdist.linux-armv7l/wheel/tests 2023-11-23T20:25:08,054 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-11-23T20:25:08,055 copying build/lib/tests/test_pipeline.py -> build/bdist.linux-armv7l/wheel/tests 2023-11-23T20:25:08,057 running install_egg_info 2023-11-23T20:25:08,061 Copying witch_msa.egg-info to build/bdist.linux-armv7l/wheel/witch_msa-1.0.0rc1-py3.11.egg-info 2023-11-23T20:25:08,072 running install_scripts 2023-11-23T20:25:08,074 creating build/bdist.linux-armv7l/wheel/witch_msa-1.0.0rc1.data 2023-11-23T20:25:08,074 creating build/bdist.linux-armv7l/wheel/witch_msa-1.0.0rc1.data/scripts 2023-11-23T20:25:08,076 copying build/scripts-3.11/witch.py -> build/bdist.linux-armv7l/wheel/witch_msa-1.0.0rc1.data/scripts 2023-11-23T20:25:08,078 changing mode of build/bdist.linux-armv7l/wheel/witch_msa-1.0.0rc1.data/scripts/witch.py to 755 2023-11-23T20:25:08,099 creating build/bdist.linux-armv7l/wheel/witch_msa-1.0.0rc1.dist-info/WHEEL 2023-11-23T20:25:08,102 creating '/tmp/pip-wheel-aljia4o6/.tmp-tt84wpvx/witch_msa-1.0.0rc1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-23T20:25:08,104 adding 'gcmm/__init__.py' 2023-11-23T20:25:08,108 adding 'gcmm/algorithm.py' 2023-11-23T20:25:08,111 adding 'gcmm/aligner.py' 2023-11-23T20:25:08,113 adding 'gcmm/backbone.py' 2023-11-23T20:25:08,115 adding 'gcmm/callback.py' 2023-11-23T20:25:08,117 adding 'gcmm/configs.py' 2023-11-23T20:25:08,119 adding 'gcmm/decompose_tree.py' 2023-11-23T20:25:08,121 adding 'gcmm/gcmm.py' 2023-11-23T20:25:08,123 adding 'gcmm/loader.py' 2023-11-23T20:25:08,125 adding 'gcmm/merger.py' 2023-11-23T20:25:08,127 adding 'gcmm/results_handler.py' 2023-11-23T20:25:08,128 adding 'gcmm/task.py' 2023-11-23T20:25:08,131 adding 'gcmm/tree.py' 2023-11-23T20:25:08,133 adding 'gcmm/weighting.py' 2023-11-23T20:25:08,134 adding 'helpers/__init__.py' 2023-11-23T20:25:08,140 adding 'helpers/alignment_tools.py' 2023-11-23T20:25:08,142 adding 'helpers/general_tools.py' 2023-11-23T20:25:08,143 adding 'helpers/math_utils.py' 2023-11-23T20:25:08,144 adding 'helpers/pyhmmer_tools.py' 2023-11-23T20:25:08,146 adding 'tests/__init__.py' 2023-11-23T20:25:08,147 adding 'tests/test_pipeline.py' 2023-11-23T20:25:08,151 adding 'witch_msa-1.0.0rc1.data/scripts/witch.py' 2023-11-23T20:25:08,158 adding 'witch_msa-1.0.0rc1.dist-info/LICENSE' 2023-11-23T20:25:08,166 adding 'witch_msa-1.0.0rc1.dist-info/METADATA' 2023-11-23T20:25:08,167 adding 'witch_msa-1.0.0rc1.dist-info/WHEEL' 2023-11-23T20:25:08,168 adding 'witch_msa-1.0.0rc1.dist-info/top_level.txt' 2023-11-23T20:25:08,169 adding 'witch_msa-1.0.0rc1.dist-info/RECORD' 2023-11-23T20:25:08,172 removing build/bdist.linux-armv7l/wheel 2023-11-23T20:25:08,298 Building wheel for witch-msa (pyproject.toml): finished with status 'done' 2023-11-23T20:25:08,304 Created wheel for witch-msa: filename=witch_msa-1.0.0rc1-py3-none-any.whl size=89789 sha256=7639b8df3d4a6b6fc2a4e2654e2da8d9636881239740deb58f44b604e93074d6 2023-11-23T20:25:08,306 Stored in directory: /tmp/pip-ephem-wheel-cache-x60af447/wheels/27/b7/62/9fdfebf45dea582e511608573ccfb361a808644f5886016368 2023-11-23T20:25:08,339 Successfully built witch-msa 2023-11-23T20:25:08,345 Removed build tracker: '/tmp/pip-build-tracker-1xwv4ydi'