2023-11-23T22:43:19,776 Created temporary directory: /tmp/pip-build-tracker-vcc9ka1v
2023-11-23T22:43:19,777 Initialized build tracking at /tmp/pip-build-tracker-vcc9ka1v
2023-11-23T22:43:19,778 Created build tracker: /tmp/pip-build-tracker-vcc9ka1v
2023-11-23T22:43:19,778 Entered build tracker: /tmp/pip-build-tracker-vcc9ka1v
2023-11-23T22:43:19,779 Created temporary directory: /tmp/pip-wheel-r6zigs_v
2023-11-23T22:43:19,782 Created temporary directory: /tmp/pip-ephem-wheel-cache-oif1t2je
2023-11-23T22:43:19,804 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-23T22:43:19,808 2 location(s) to search for versions of scipion-em-tomo3d:
2023-11-23T22:43:19,808 * https://pypi.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:19,808 * https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:19,808 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:19,809 Getting page https://pypi.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:19,811 Found index url https://pypi.org/simple/
2023-11-23T22:43:20,032 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json
2023-11-23T22:43:20,034   Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0
2023-11-23T22:43:20,034   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2023-11-23T22:43:20,035   Found link https://files.pythonhosted.org/packages/9d/4e/4ed2583cdc9b328f31ce35dac04e8dcf3a7e6c4c28cb5a2b8e3d0de28f66/scipion-em-tomo3d-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.1
2023-11-23T22:43:20,036   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/f8/4c/c4fe28e7ecff9521fe708df2b9de13ca97d1d03104a77a16b1240fdef7c1/scipion_em_tomo3d-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2023-11-23T22:43:20,036   Found link https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.2
2023-11-23T22:43:20,037   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/bb/d4/ec3e1c200ae6c204eca1fc45f208fb5d39bcfe64767475c5c33deb595424/scipion_em_tomo3d-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2023-11-23T22:43:20,038 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:20,038 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:20,040 Found index url https://www.piwheels.org/simple/
2023-11-23T22:43:20,197 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html
2023-11-23T22:43:20,199 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:20,199 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/
2023-11-23T22:43:20,219 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates
2023-11-23T22:43:20,238 Collecting scipion-em-tomo3d==3.1.2
2023-11-23T22:43:20,241   Created temporary directory: /tmp/pip-unpack-hy0k00ea
2023-11-23T22:43:20,377   Downloading scipion-em-tomo3d-3.1.2.tar.gz (27 kB)
2023-11-23T22:43:20,448   Added scipion-em-tomo3d==3.1.2 from https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-vcc9ka1v'
2023-11-23T22:43:20,450   Running setup.py (path:/tmp/pip-wheel-r6zigs_v/scipion-em-tomo3d_8ad2f50c0eb54005b5e940d62e28d3c2/setup.py) egg_info for package scipion-em-tomo3d
2023-11-23T22:43:20,451   Created temporary directory: /tmp/pip-pip-egg-info-mjhqjxed
2023-11-23T22:43:20,452   Preparing metadata (setup.py): started
2023-11-23T22:43:20,453   Running command python setup.py egg_info
2023-11-23T22:43:20,895   Traceback (most recent call last):
2023-11-23T22:43:20,896     File "<string>", line 2, in <module>
2023-11-23T22:43:20,896     File "<pip-setuptools-caller>", line 34, in <module>
2023-11-23T22:43:20,897     File "/tmp/pip-wheel-r6zigs_v/scipion-em-tomo3d_8ad2f50c0eb54005b5e940d62e28d3c2/setup.py", line 13, in <module>
2023-11-23T22:43:20,898       from tomo3d import __version__
2023-11-23T22:43:20,899     File "/tmp/pip-wheel-r6zigs_v/scipion-em-tomo3d_8ad2f50c0eb54005b5e940d62e28d3c2/tomo3d/__init__.py", line 31, in <module>
2023-11-23T22:43:20,899       import pwem
2023-11-23T22:43:20,900   ModuleNotFoundError: No module named 'pwem'
2023-11-23T22:43:20,966   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-11-23T22:43:20,979   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-11-23T22:43:20,979   exec(compile('"'"''"'"''"'"'
2023-11-23T22:43:20,979   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-11-23T22:43:20,979   #
2023-11-23T22:43:20,979   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-11-23T22:43:20,979   #   import from `distutils.core` to work with newer packaging standards.
2023-11-23T22:43:20,979   # - It provides a clear error message when setuptools is not installed.
2023-11-23T22:43:20,979   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-11-23T22:43:20,979   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-11-23T22:43:20,979   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-11-23T22:43:20,979   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-11-23T22:43:20,979   import os, sys, tokenize
2023-11-23T22:43:20,979   
2023-11-23T22:43:20,979   try:
2023-11-23T22:43:20,979       import setuptools
2023-11-23T22:43:20,979   except ImportError as error:
2023-11-23T22:43:20,979       print(
2023-11-23T22:43:20,979           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-11-23T22:43:20,979           "the build environment.",
2023-11-23T22:43:20,979           file=sys.stderr,
2023-11-23T22:43:20,979       )
2023-11-23T22:43:20,979       sys.exit(1)
2023-11-23T22:43:20,979   
2023-11-23T22:43:20,979   __file__ = %r
2023-11-23T22:43:20,979   sys.argv[0] = __file__
2023-11-23T22:43:20,979   
2023-11-23T22:43:20,979   if os.path.exists(__file__):
2023-11-23T22:43:20,979       filename = __file__
2023-11-23T22:43:20,979       with tokenize.open(__file__) as f:
2023-11-23T22:43:20,979           setup_py_code = f.read()
2023-11-23T22:43:20,979   else:
2023-11-23T22:43:20,979       filename = "<auto-generated setuptools caller>"
2023-11-23T22:43:20,979       setup_py_code = "from setuptools import setup; setup()"
2023-11-23T22:43:20,979   
2023-11-23T22:43:20,979   exec(compile(setup_py_code, filename, "exec"))
2023-11-23T22:43:20,979   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-r6zigs_v/scipion-em-tomo3d_8ad2f50c0eb54005b5e940d62e28d3c2/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-mjhqjxed[/]
2023-11-23T22:43:20,980   [bold magenta]cwd[/]: /tmp/pip-wheel-r6zigs_v/scipion-em-tomo3d_8ad2f50c0eb54005b5e940d62e28d3c2/
2023-11-23T22:43:20,981   Preparing metadata (setup.py): finished with status 'error'
2023-11-23T22:43:20,982 ERROR: [present-rich] metadata generation failed
2023-11-23T22:43:20,987 Exception information:
2023-11-23T22:43:20,987 Traceback (most recent call last):
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-11-23T22:43:20,987     call_subprocess(
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-11-23T22:43:20,987     raise error
2023-11-23T22:43:20,987 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-11-23T22:43:20,987 
2023-11-23T22:43:20,987 The above exception was the direct cause of the following exception:
2023-11-23T22:43:20,987 
2023-11-23T22:43:20,987 Traceback (most recent call last):
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-11-23T22:43:20,987     status = run_func(*args)
2023-11-23T22:43:20,987              ^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-11-23T22:43:20,987     return func(self, options, args)
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-11-23T22:43:20,987     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-11-23T22:43:20,987                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-11-23T22:43:20,987     result = self._result = resolver.resolve(
2023-11-23T22:43:20,987                             ^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-11-23T22:43:20,987     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-11-23T22:43:20,987             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-11-23T22:43:20,987     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-11-23T22:43:20,987     if not criterion.candidates:
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-11-23T22:43:20,987     return bool(self._sequence)
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-11-23T22:43:20,987     return any(self)
2023-11-23T22:43:20,987            ^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-11-23T22:43:20,987     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-11-23T22:43:20,987     candidate = func()
2023-11-23T22:43:20,987                 ^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-11-23T22:43:20,987     self._link_candidate_cache[link] = LinkCandidate(
2023-11-23T22:43:20,987                                        ^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-11-23T22:43:20,987     super().__init__(
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-11-23T22:43:20,987     self.dist = self._prepare()
2023-11-23T22:43:20,987                 ^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-11-23T22:43:20,987     dist = self._prepare_distribution()
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-11-23T22:43:20,987     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-11-23T22:43:20,987     return self._prepare_linked_requirement(req, parallel_builds)
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-11-23T22:43:20,987     dist = _get_prepared_distribution(
2023-11-23T22:43:20,987            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-11-23T22:43:20,987     abstract_dist.prepare_distribution_metadata(
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-11-23T22:43:20,987     self.req.prepare_metadata()
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-11-23T22:43:20,987     self.metadata_directory = generate_metadata_legacy(
2023-11-23T22:43:20,987                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-11-23T22:43:20,987   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-11-23T22:43:20,987     raise MetadataGenerationFailed(package_details=details) from error
2023-11-23T22:43:20,987 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-11-23T22:43:21,000 Removed scipion-em-tomo3d==3.1.2 from https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-vcc9ka1v'
2023-11-23T22:43:21,001 Removed build tracker: '/tmp/pip-build-tracker-vcc9ka1v'