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2023-11-24T06:59:29,234 Added vsc-install==0.19.5 from https://files.pythonhosted.org/packages/06/6c/ab254919bf3010e973b94706096d0e23f3bd3450a7dba98c7d0142603527/vsc-install-0.19.5.tar.gz to build tracker '/tmp/pip-build-tracker-ey8a_zct' 2023-11-24T06:59:29,236 Running setup.py (path:/tmp/pip-wheel-gtz135n5/vsc-install_47e90d79c8cf4c5e9c2c3ce59a3b41f3/setup.py) egg_info for package vsc-install 2023-11-24T06:59:29,237 Created temporary directory: /tmp/pip-pip-egg-info-2f3874jx 2023-11-24T06:59:29,238 Preparing metadata (setup.py): started 2023-11-24T06:59:29,239 Running command python setup.py egg_info 2023-11-24T06:59:29,969 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/log.py:46: UserWarning: Logging class to prefix the message with a human readable log level 2023-11-24T06:59:29,969 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2023-11-24T06:59:29,978 WARN: cleanup lib/vsc_install.egg-info 2023-11-24T06:59:30,036 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': 'Author: Stijn De Weirdt;Andy Georges;Jens Timmerman', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 42.0', 'mock'], 'tests_require': ['mock', 'pylint < 3', 'prospector < 1.10.4', 'pylint-plugin-utils < 0.8', 'pylint-django < 2.5.4', 'astroid <= 2.17.0-dev0', 'pycodestyle < 2.10'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n Path(int(somestring)).write_text(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nUse \'easy_install\' to install tox\n---------------------------------\n\nFor legacy reasons easy_install is still supported. If you still need it you can enable it (not recommended):\n\n```ini\n[vsc-ci]\neasy_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-noenv.sh', 'bin/python-stripped-env'], 'namespace_packages': ['vsc'], 'version': '0.19.5', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'}/usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-24T06:59:30,037 !! 2023-11-24T06:59:30,038 ******************************************************************************** 2023-11-24T06:59:30,039 Usage of dash-separated 'description-file' will not be supported in future 2023-11-24T06:59:30,040 versions. Please use the underscore name 'description_file' instead. 2023-11-24T06:59:30,041 This deprecation is overdue, please update your project and remove deprecated 2023-11-24T06:59:30,041 calls to avoid build errors in the future. 2023-11-24T06:59:30,042 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-24T06:59:30,043 ******************************************************************************** 2023-11-24T06:59:30,044 !! 2023-11-24T06:59:30,045 opt = self.warn_dash_deprecation(opt, section) 2023-11-24T06:59:30,053 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-24T06:59:30,054 !! 2023-11-24T06:59:30,055 ******************************************************************************** 2023-11-24T06:59:30,056 Requirements should be satisfied by a PEP 517 installer. 2023-11-24T06:59:30,057 If you are using pip, you can try `pip install --use-pep517`. 2023-11-24T06:59:30,057 ******************************************************************************** 2023-11-24T06:59:30,058 !! 2023-11-24T06:59:30,058 dist.fetch_build_eggs(dist.setup_requires) 2023-11-24T06:59:30,388 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:700: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated. 2023-11-24T06:59:30,389 !! 2023-11-24T06:59:30,389 ******************************************************************************** 2023-11-24T06:59:30,390 Please replace its usage with implicit namespaces (PEP 420). 2023-11-24T06:59:30,391 See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details. 2023-11-24T06:59:30,391 ******************************************************************************** 2023-11-24T06:59:30,392 !! 2023-11-24T06:59:30,393 ep.load()(self, ep.name, value) 2023-11-24T06:59:30,405 running egg_info 2023-11-24T06:59:30,409 creating /tmp/pip-pip-egg-info-2f3874jx/vsc_install.egg-info 2023-11-24T06:59:30,443 writing manifest file '/tmp/pip-pip-egg-info-2f3874jx/vsc_install.egg-info/SOURCES.txt' 2023-11-24T06:59:30,553 writing manifest file '/tmp/pip-pip-egg-info-2f3874jx/vsc_install.egg-info/SOURCES.txt' 2023-11-24T06:59:30,674 Preparing metadata (setup.py): finished with status 'done' 2023-11-24T06:59:30,680 Source in /tmp/pip-wheel-gtz135n5/vsc-install_47e90d79c8cf4c5e9c2c3ce59a3b41f3 has version 0.19.5, which satisfies requirement vsc-install==0.19.5 from https://files.pythonhosted.org/packages/06/6c/ab254919bf3010e973b94706096d0e23f3bd3450a7dba98c7d0142603527/vsc-install-0.19.5.tar.gz 2023-11-24T06:59:30,680 Removed vsc-install==0.19.5 from https://files.pythonhosted.org/packages/06/6c/ab254919bf3010e973b94706096d0e23f3bd3450a7dba98c7d0142603527/vsc-install-0.19.5.tar.gz from build tracker '/tmp/pip-build-tracker-ey8a_zct' 2023-11-24T06:59:30,687 Created temporary directory: /tmp/pip-unpack-xamvouky 2023-11-24T06:59:30,688 Created temporary directory: /tmp/pip-unpack-dima3pgx 2023-11-24T06:59:30,695 Building wheels for collected packages: vsc-install 2023-11-24T06:59:30,699 Created temporary directory: /tmp/pip-wheel-4zjw4ajo 2023-11-24T06:59:30,700 Building wheel for vsc-install (setup.py): started 2023-11-24T06:59:30,702 Destination directory: /tmp/pip-wheel-4zjw4ajo 2023-11-24T06:59:30,702 Running command python setup.py bdist_wheel 2023-11-24T06:59:31,404 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/log.py:46: UserWarning: Logging class to prefix the message with a human readable log level 2023-11-24T06:59:31,404 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2023-11-24T06:59:31,423 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': 'Author: Stijn De Weirdt;Andy Georges;Jens Timmerman', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 42.0', 'mock'], 'tests_require': ['mock', 'pylint < 3', 'prospector < 1.10.4', 'pylint-plugin-utils < 0.8', 'pylint-django < 2.5.4', 'astroid <= 2.17.0-dev0', 'pycodestyle < 2.10'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n Path(int(somestring)).write_text(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nUse \'easy_install\' to install tox\n---------------------------------\n\nFor legacy reasons easy_install is still supported. If you still need it you can enable it (not recommended):\n\n```ini\n[vsc-ci]\neasy_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-noenv.sh', 'bin/python-stripped-env'], 'namespace_packages': ['vsc'], 'version': '0.19.5', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'} 2023-11-24T06:59:31,463 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:498: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-24T06:59:31,465 !! 2023-11-24T06:59:31,466 ******************************************************************************** 2023-11-24T06:59:31,467 Usage of dash-separated 'description-file' will not be supported in future 2023-11-24T06:59:31,467 versions. Please use the underscore name 'description_file' instead. 2023-11-24T06:59:31,468 This deprecation is overdue, please update your project and remove deprecated 2023-11-24T06:59:31,468 calls to avoid build errors in the future. 2023-11-24T06:59:31,469 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-24T06:59:31,470 ******************************************************************************** 2023-11-24T06:59:31,471 !! 2023-11-24T06:59:31,471 opt = self.warn_dash_deprecation(opt, section) 2023-11-24T06:59:31,475 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-24T06:59:31,476 !! 2023-11-24T06:59:31,477 ******************************************************************************** 2023-11-24T06:59:31,477 Requirements should be satisfied by a PEP 517 installer. 2023-11-24T06:59:31,478 If you are using pip, you can try `pip install --use-pep517`. 2023-11-24T06:59:31,478 ******************************************************************************** 2023-11-24T06:59:31,479 !! 2023-11-24T06:59:31,479 dist.fetch_build_eggs(dist.setup_requires) 2023-11-24T06:59:31,805 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:700: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated. 2023-11-24T06:59:31,806 !! 2023-11-24T06:59:31,807 ******************************************************************************** 2023-11-24T06:59:31,808 Please replace its usage with implicit namespaces (PEP 420). 2023-11-24T06:59:31,809 See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details. 2023-11-24T06:59:31,810 ******************************************************************************** 2023-11-24T06:59:31,811 !! 2023-11-24T06:59:31,811 ep.load()(self, ep.name, value) 2023-11-24T06:59:31,844 running bdist_wheel 2023-11-24T06:59:31,947 running build 2023-11-24T06:59:31,947 running build_py 2023-11-24T06:59:31,972 creating build 2023-11-24T06:59:31,973 creating build/lib 2023-11-24T06:59:31,973 creating build/lib/vsc 2023-11-24T06:59:31,975 copying lib/vsc/__init__.py -> build/lib/vsc 2023-11-24T06:59:31,977 creating build/lib/vsc/install 2023-11-24T06:59:31,978 copying lib/vsc/install/testing.py -> build/lib/vsc/install 2023-11-24T06:59:31,980 copying lib/vsc/install/commontest.py -> build/lib/vsc/install 2023-11-24T06:59:31,982 copying lib/vsc/install/methodinspector.py -> build/lib/vsc/install 2023-11-24T06:59:31,984 copying lib/vsc/install/headers.py -> build/lib/vsc/install 2023-11-24T06:59:31,986 copying lib/vsc/install/ci.py -> build/lib/vsc/install 2023-11-24T06:59:31,989 copying lib/vsc/install/shared_setup.py -> build/lib/vsc/install 2023-11-24T06:59:31,992 copying lib/vsc/install/__init__.py -> build/lib/vsc/install 2023-11-24T06:59:31,994 running build_scripts 2023-11-24T06:59:31,995 creating build/scripts-3.11 2023-11-24T06:59:31,996 copying bin/python-noenv.sh -> build/scripts-3.11 2023-11-24T06:59:31,998 copying bin/python-stripped-env -> build/scripts-3.11 2023-11-24T06:59:32,000 changing mode of build/scripts-3.11/python-noenv.sh from 644 to 755 2023-11-24T06:59:32,026 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-24T06:59:32,027 !! 2023-11-24T06:59:32,028 ******************************************************************************** 2023-11-24T06:59:32,029 Please avoid running ``setup.py`` directly. 2023-11-24T06:59:32,030 Instead, use pypa/build, pypa/installer or other 2023-11-24T06:59:32,030 standards-based tools. 2023-11-24T06:59:32,031 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-24T06:59:32,031 ******************************************************************************** 2023-11-24T06:59:32,032 !! 2023-11-24T06:59:32,033 self.initialize_options() 2023-11-24T06:59:32,033 installing to build/bdist.linux-armv7l/wheel 2023-11-24T06:59:32,033 running install 2023-11-24T06:59:32,053 running install_lib 2023-11-24T06:59:32,080 WARN: Skipping installation of build/bdist.linux-armv7l/wheel/vsc/__init__.py (namespace package) 2023-11-24T06:59:32,100 running install_egg_info 2023-11-24T06:59:32,126 running egg_info 2023-11-24T06:59:32,127 creating lib/vsc_install.egg-info 2023-11-24T06:59:32,160 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2023-11-24T06:59:32,192 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2023-11-24T06:59:32,193 Copying lib/vsc_install.egg-info to build/bdist.linux-armv7l/wheel/vsc_install-0.19.5-py3.11.egg-info 2023-11-24T06:59:32,208 running install_scripts 2023-11-24T06:59:32,209 creating build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.data 2023-11-24T06:59:32,209 creating build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.data/scripts 2023-11-24T06:59:32,210 copying build/scripts-3.11/python-noenv.sh -> build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.data/scripts 2023-11-24T06:59:32,212 copying build/scripts-3.11/python-stripped-env -> build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.data/scripts 2023-11-24T06:59:32,214 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.data/scripts/python-noenv.sh to 755 2023-11-24T06:59:32,215 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.data/scripts/python-stripped-env to 755 2023-11-24T06:59:32,233 creating build/bdist.linux-armv7l/wheel/vsc_install-0.19.5.dist-info/WHEEL 2023-11-24T06:59:32,236 creating '/tmp/pip-wheel-4zjw4ajo/vsc_install-0.19.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-24T06:59:32,238 adding 'vsc_install-0.19.5-py3.11-nspkg.pth' 2023-11-24T06:59:32,240 adding 'vsc/install/__init__.py' 2023-11-24T06:59:32,242 adding 'vsc/install/ci.py' 2023-11-24T06:59:32,245 adding 'vsc/install/commontest.py' 2023-11-24T06:59:32,247 adding 'vsc/install/headers.py' 2023-11-24T06:59:32,249 adding 'vsc/install/methodinspector.py' 2023-11-24T06:59:32,258 adding 'vsc/install/shared_setup.py' 2023-11-24T06:59:32,261 adding 'vsc/install/testing.py' 2023-11-24T06:59:32,263 adding 'vsc_install-0.19.5.data/scripts/python-noenv' 2023-11-24T06:59:32,265 adding 'vsc_install-0.19.5.data/scripts/python-stripped-env' 2023-11-24T06:59:32,270 adding 'vsc_install-0.19.5.dist-info/LICENSE' 2023-11-24T06:59:32,273 adding 'vsc_install-0.19.5.dist-info/METADATA' 2023-11-24T06:59:32,274 adding 'vsc_install-0.19.5.dist-info/WHEEL' 2023-11-24T06:59:32,275 adding 'vsc_install-0.19.5.dist-info/namespace_packages.txt' 2023-11-24T06:59:32,276 adding 'vsc_install-0.19.5.dist-info/top_level.txt' 2023-11-24T06:59:32,277 adding 'vsc_install-0.19.5.dist-info/RECORD' 2023-11-24T06:59:32,279 removing build/bdist.linux-armv7l/wheel 2023-11-24T06:59:32,406 Building wheel for vsc-install (setup.py): finished with status 'done' 2023-11-24T06:59:32,409 Created wheel for vsc-install: filename=vsc_install-0.19.5-py3-none-any.whl size=60444 sha256=94ed1c24e27f9c8c4e0aff13db012466610b56451d786db2331566abb9e795d3 2023-11-24T06:59:32,410 Stored in directory: /tmp/pip-ephem-wheel-cache-zkst9oux/wheels/2f/ee/29/cd2393a27ada30d31c5e6966570c9d882465489a9babc83eae 2023-11-24T06:59:32,425 Successfully built vsc-install 2023-11-24T06:59:32,430 Removed build tracker: '/tmp/pip-build-tracker-ey8a_zct'