2023-11-24T08:07:31,996 Created temporary directory: /tmp/pip-build-tracker-zjpiivrl 2023-11-24T08:07:32,000 Initialized build tracking at /tmp/pip-build-tracker-zjpiivrl 2023-11-24T08:07:32,000 Created build tracker: /tmp/pip-build-tracker-zjpiivrl 2023-11-24T08:07:32,000 Entered build tracker: /tmp/pip-build-tracker-zjpiivrl 2023-11-24T08:07:32,002 Created temporary directory: /tmp/pip-wheel-wrfhq3cc 2023-11-24T08:07:32,012 Created temporary directory: /tmp/pip-ephem-wheel-cache-pi9hwsze 2023-11-24T08:07:32,068 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-24T08:07:32,082 2 location(s) to search for versions of spagrn: 2023-11-24T08:07:32,082 * https://pypi.org/simple/spagrn/ 2023-11-24T08:07:32,082 * https://www.piwheels.org/simple/spagrn/ 2023-11-24T08:07:32,083 Fetching project page and analyzing links: https://pypi.org/simple/spagrn/ 2023-11-24T08:07:32,084 Getting page https://pypi.org/simple/spagrn/ 2023-11-24T08:07:32,088 Found index url https://pypi.org/simple/ 2023-11-24T08:07:32,200 Fetched page https://pypi.org/simple/spagrn/ as application/vnd.pypi.simple.v1+json 2023-11-24T08:07:32,206 Found link https://files.pythonhosted.org/packages/dd/c6/fc9d5b53005776a8b94e7a54d3a1f519aff4062171b543074e2ff2b627e2/spagrn-1.0.0.tar.gz (from https://pypi.org/simple/spagrn/), version: 1.0.0 2023-11-24T08:07:32,207 Found link https://files.pythonhosted.org/packages/c6/e5/ac11c77421e43de22d6623b744df151e776128167245ada24466cd7cfefd/spagrn-1.0.1.tar.gz (from https://pypi.org/simple/spagrn/), version: 1.0.1 2023-11-24T08:07:32,209 Found link https://files.pythonhosted.org/packages/0a/b1/2275b7a04370548001a28d8f9388e9b52c00edec0cb85cc063f1c46c7896/spagrn-1.0.2.tar.gz (from https://pypi.org/simple/spagrn/) (requires-python:>=3.7,<3.11), version: 1.0.2 2023-11-24T08:07:32,210 Found link https://files.pythonhosted.org/packages/e0/6e/d05db261dcb2586691f2b3124e7aa0be9f5c6ab50b7ae0653ef70c6bd880/spagrn-1.0.3.tar.gz (from https://pypi.org/simple/spagrn/) (requires-python:>=3.7,<3.11), version: 1.0.3 2023-11-24T08:07:32,212 Found link https://files.pythonhosted.org/packages/82/15/3a0879485176792359622ab67f3916ca45c5c487b33d028d703e0f28cb4e/spagrn-1.0.4.tar.gz (from https://pypi.org/simple/spagrn/) (requires-python:>=3.7,<3.11), version: 1.0.4 2023-11-24T08:07:32,214 Found link https://files.pythonhosted.org/packages/52/80/cbd30481631a09cafacb50f97f243b342e65a3718d7c5801c3db29361684/spagrn-1.0.5.tar.gz (from https://pypi.org/simple/spagrn/) (requires-python:>=3.7,<3.11), version: 1.0.5 2023-11-24T08:07:32,216 Found link https://files.pythonhosted.org/packages/9d/eb/efdf044e6cc97f354732882beccaff86f69b2ce40abbf0b4397ced708738/spagrn-1.0.6.tar.gz (from https://pypi.org/simple/spagrn/) (requires-python:>=3.7,<3.11), version: 1.0.6 2023-11-24T08:07:32,217 Found link https://files.pythonhosted.org/packages/19/9b/ce892cbc325e2c01f5170d95dbca4d376258e7f5e9b274eee2be70ffd973/spagrn-1.0.7.tar.gz (from https://pypi.org/simple/spagrn/) (requires-python:>=3.7,<3.11), version: 1.0.7 2023-11-24T08:07:32,218 Fetching project page and analyzing links: https://www.piwheels.org/simple/spagrn/ 2023-11-24T08:07:32,219 Getting page https://www.piwheels.org/simple/spagrn/ 2023-11-24T08:07:32,221 Found index url https://www.piwheels.org/simple/ 2023-11-24T08:07:32,345 Fetched page https://www.piwheels.org/simple/spagrn/ as text/html 2023-11-24T08:07:32,352 Skipping link: No binaries permitted for spagrn: https://www.piwheels.org/simple/spagrn/spagrn-1.0.6-py3-none-any.whl#sha256=07be01bc5bb4fea994462a1960a2b5dc58f3f5675fc9435eb1011afc372372f3 (from https://www.piwheels.org/simple/spagrn/) (requires-python:>=3.7,<3.11) 2023-11-24T08:07:32,353 Skipping link: No binaries permitted for spagrn: https://www.piwheels.org/simple/spagrn/spagrn-1.0.5-py3-none-any.whl#sha256=8c8197b269e3f2f5ebdfdb29b1de76c022e3f722ac4577be7a129722e2215ab6 (from https://www.piwheels.org/simple/spagrn/) (requires-python:>=3.7,<3.11) 2023-11-24T08:07:32,353 Skipping link: No binaries permitted for spagrn: https://www.piwheels.org/simple/spagrn/spagrn-1.0.4-py3-none-any.whl#sha256=5bc83992943471af78ca8859ccb43cc593fa6368bb854d9c9caae22805870d47 (from https://www.piwheels.org/simple/spagrn/) (requires-python:>=3.7,<3.11) 2023-11-24T08:07:32,354 Skipping link: No binaries permitted for spagrn: https://www.piwheels.org/simple/spagrn/spagrn-1.0.3-py3-none-any.whl#sha256=f397990eb38f5106fe2a07e79e233e0fd430b143e86edd144ad20eea2370622e (from https://www.piwheels.org/simple/spagrn/) (requires-python:>=3.7,<3.11) 2023-11-24T08:07:32,355 Skipping link: No binaries permitted for spagrn: https://www.piwheels.org/simple/spagrn/spagrn-1.0.1-py3-none-any.whl#sha256=e484f930f8395720d3715359e23419c44aa51487230d2ce1322458da07e878d3 (from https://www.piwheels.org/simple/spagrn/) 2023-11-24T08:07:32,355 Skipping link: No binaries permitted for spagrn: https://www.piwheels.org/simple/spagrn/spagrn-1.0.0-py3-none-any.whl#sha256=bea054f3023283d207c39b9239f1895c67bd72c2b8892641ba9016d9cdad5546 (from https://www.piwheels.org/simple/spagrn/) 2023-11-24T08:07:32,356 Skipping link: not a file: https://www.piwheels.org/simple/spagrn/ 2023-11-24T08:07:32,356 Skipping link: not a file: https://pypi.org/simple/spagrn/ 2023-11-24T08:07:32,391 Given no hashes to check 1 links for project 'spagrn': discarding no candidates 2023-11-24T08:07:32,423 Collecting spagrn==1.0.7 2023-11-24T08:07:32,428 Created temporary directory: /tmp/pip-unpack-uf2sm51k 2023-11-24T08:07:32,524 Downloading spagrn-1.0.7.tar.gz (50 kB) 2023-11-24T08:07:32,694 Added spagrn==1.0.7 from https://files.pythonhosted.org/packages/19/9b/ce892cbc325e2c01f5170d95dbca4d376258e7f5e9b274eee2be70ffd973/spagrn-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-zjpiivrl' 2023-11-24T08:07:32,698 Running setup.py (path:/tmp/pip-wheel-wrfhq3cc/spagrn_5456694ef484406cad340d2cf82e67a8/setup.py) egg_info for package spagrn 2023-11-24T08:07:32,699 Created temporary directory: /tmp/pip-pip-egg-info-ccfm44v0 2023-11-24T08:07:32,699 Preparing metadata (setup.py): started 2023-11-24T08:07:32,702 Running command python setup.py egg_info 2023-11-24T08:07:35,355 running egg_info 2023-11-24T08:07:35,358 creating /tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info 2023-11-24T08:07:35,426 writing /tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/PKG-INFO 2023-11-24T08:07:35,430 writing dependency_links to /tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/dependency_links.txt 2023-11-24T08:07:35,433 writing entry points to /tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/entry_points.txt 2023-11-24T08:07:35,436 writing requirements to /tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/requires.txt 2023-11-24T08:07:35,438 writing top-level names to /tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/top_level.txt 2023-11-24T08:07:35,441 writing manifest file '/tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/SOURCES.txt' 2023-11-24T08:07:35,654 reading manifest file '/tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/SOURCES.txt' 2023-11-24T08:07:35,657 adding license file 'LICENSE' 2023-11-24T08:07:35,663 writing manifest file '/tmp/pip-pip-egg-info-ccfm44v0/spagrn.egg-info/SOURCES.txt' 2023-11-24T08:07:35,664 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-24T08:07:35,665 !! 2023-11-24T08:07:35,666 ******************************************************************************** 2023-11-24T08:07:35,666 Usage of dash-separated 'description-file' will not be supported in future 2023-11-24T08:07:35,667 versions. Please use the underscore name 'description_file' instead. 2023-11-24T08:07:35,667 This deprecation is overdue, please update your project and remove deprecated 2023-11-24T08:07:35,668 calls to avoid build errors in the future. 2023-11-24T08:07:35,669 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-24T08:07:35,669 ******************************************************************************** 2023-11-24T08:07:35,670 !! 2023-11-24T08:07:35,671 opt = self.warn_dash_deprecation(opt, section) 2023-11-24T08:07:35,671 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-24T08:07:35,672 !! 2023-11-24T08:07:35,673 ******************************************************************************** 2023-11-24T08:07:35,673 Usage of dash-separated 'description-file' will not be supported in future 2023-11-24T08:07:35,674 versions. Please use the underscore name 'description_file' instead. 2023-11-24T08:07:35,674 This deprecation is overdue, please update your project and remove deprecated 2023-11-24T08:07:35,675 calls to avoid build errors in the future. 2023-11-24T08:07:35,676 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-24T08:07:35,676 ******************************************************************************** 2023-11-24T08:07:35,677 !! 2023-11-24T08:07:35,677 opt = self.warn_dash_deprecation(opt, section) 2023-11-24T08:07:35,836 Preparing metadata (setup.py): finished with status 'done' 2023-11-24T08:07:35,848 Source in /tmp/pip-wheel-wrfhq3cc/spagrn_5456694ef484406cad340d2cf82e67a8 has version 1.0.7, which satisfies requirement spagrn==1.0.7 from https://files.pythonhosted.org/packages/19/9b/ce892cbc325e2c01f5170d95dbca4d376258e7f5e9b274eee2be70ffd973/spagrn-1.0.7.tar.gz 2023-11-24T08:07:35,850 Removed spagrn==1.0.7 from https://files.pythonhosted.org/packages/19/9b/ce892cbc325e2c01f5170d95dbca4d376258e7f5e9b274eee2be70ffd973/spagrn-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-zjpiivrl' 2023-11-24T08:07:35,867 Created temporary directory: /tmp/pip-unpack-0nso8ob9 2023-11-24T08:07:35,868 Created temporary directory: /tmp/pip-unpack-bor8yr4f 2023-11-24T08:07:35,907 Building wheels for collected packages: spagrn 2023-11-24T08:07:35,917 Created temporary directory: /tmp/pip-wheel-ekbvndof 2023-11-24T08:07:35,918 Building wheel for spagrn (setup.py): started 2023-11-24T08:07:35,920 Destination directory: /tmp/pip-wheel-ekbvndof 2023-11-24T08:07:35,920 Running command python setup.py bdist_wheel 2023-11-24T08:07:37,082 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-24T08:07:37,084 !! 2023-11-24T08:07:37,085 ******************************************************************************** 2023-11-24T08:07:37,085 Usage of dash-separated 'description-file' will not be supported in future 2023-11-24T08:07:37,085 versions. Please use the underscore name 'description_file' instead. 2023-11-24T08:07:37,086 This deprecation is overdue, please update your project and remove deprecated 2023-11-24T08:07:37,086 calls to avoid build errors in the future. 2023-11-24T08:07:37,087 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-24T08:07:37,087 ******************************************************************************** 2023-11-24T08:07:37,088 !! 2023-11-24T08:07:37,088 opt = self.warn_dash_deprecation(opt, section) 2023-11-24T08:07:38,364 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-24T08:07:38,365 !! 2023-11-24T08:07:38,366 ******************************************************************************** 2023-11-24T08:07:38,366 Usage of dash-separated 'description-file' will not be supported in future 2023-11-24T08:07:38,366 versions. Please use the underscore name 'description_file' instead. 2023-11-24T08:07:38,367 This deprecation is overdue, please update your project and remove deprecated 2023-11-24T08:07:38,367 calls to avoid build errors in the future. 2023-11-24T08:07:38,368 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-24T08:07:38,368 ******************************************************************************** 2023-11-24T08:07:38,369 !! 2023-11-24T08:07:38,369 opt = self.warn_dash_deprecation(opt, section) 2023-11-24T08:07:38,458 running bdist_wheel 2023-11-24T08:07:38,797 running build 2023-11-24T08:07:38,797 running build_py 2023-11-24T08:07:38,870 creating build 2023-11-24T08:07:38,871 creating build/lib 2023-11-24T08:07:38,873 creating build/lib/spagrn 2023-11-24T08:07:38,875 copying spagrn/params.py -> build/lib/spagrn 2023-11-24T08:07:38,879 copying spagrn/spa_logger.py -> build/lib/spagrn 2023-11-24T08:07:38,882 copying spagrn/__init__.py -> build/lib/spagrn 2023-11-24T08:07:38,886 copying spagrn/plot.py -> build/lib/spagrn 2023-11-24T08:07:38,892 copying spagrn/main.py -> build/lib/spagrn 2023-11-24T08:07:38,896 copying spagrn/auprc.py -> build/lib/spagrn 2023-11-24T08:07:38,903 copying spagrn/results.py -> build/lib/spagrn 2023-11-24T08:07:38,908 copying spagrn/regulatory_network.py -> build/lib/spagrn 2023-11-24T08:07:38,914 copying spagrn/simulator.py -> build/lib/spagrn 2023-11-24T08:07:38,919 copying spagrn/scoexp.py -> build/lib/spagrn 2023-11-24T08:07:38,924 copying spagrn/network.py -> build/lib/spagrn 2023-11-24T08:07:38,930 creating build/lib/spagrn/cli 2023-11-24T08:07:38,932 copying spagrn/cli/spagrn_parser.py -> build/lib/spagrn/cli 2023-11-24T08:07:38,938 copying spagrn/cli/__init__.py -> build/lib/spagrn/cli 2023-11-24T08:07:39,012 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-24T08:07:39,012 !! 2023-11-24T08:07:39,013 ******************************************************************************** 2023-11-24T08:07:39,014 Please avoid running ``setup.py`` directly. 2023-11-24T08:07:39,014 Instead, use pypa/build, pypa/installer or other 2023-11-24T08:07:39,015 standards-based tools. 2023-11-24T08:07:39,015 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-24T08:07:39,016 ******************************************************************************** 2023-11-24T08:07:39,016 !! 2023-11-24T08:07:39,017 self.initialize_options() 2023-11-24T08:07:39,078 installing to build/bdist.linux-armv7l/wheel 2023-11-24T08:07:39,079 running install 2023-11-24T08:07:39,136 running install_lib 2023-11-24T08:07:39,202 creating build/bdist.linux-armv7l 2023-11-24T08:07:39,203 creating build/bdist.linux-armv7l/wheel 2023-11-24T08:07:39,207 creating build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,209 copying build/lib/spagrn/params.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,213 copying build/lib/spagrn/spa_logger.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,216 copying build/lib/spagrn/__init__.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,219 copying build/lib/spagrn/plot.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,226 copying build/lib/spagrn/main.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,229 copying build/lib/spagrn/auprc.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,236 creating build/bdist.linux-armv7l/wheel/spagrn/cli 2023-11-24T08:07:39,237 copying build/lib/spagrn/cli/spagrn_parser.py -> build/bdist.linux-armv7l/wheel/spagrn/cli 2023-11-24T08:07:39,242 copying build/lib/spagrn/cli/__init__.py -> build/bdist.linux-armv7l/wheel/spagrn/cli 2023-11-24T08:07:39,246 copying build/lib/spagrn/results.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,250 copying build/lib/spagrn/regulatory_network.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,255 copying build/lib/spagrn/simulator.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,259 copying build/lib/spagrn/scoexp.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,263 copying build/lib/spagrn/network.py -> build/bdist.linux-armv7l/wheel/spagrn 2023-11-24T08:07:39,267 running install_egg_info 2023-11-24T08:07:39,343 running egg_info 2023-11-24T08:07:39,408 writing spagrn.egg-info/PKG-INFO 2023-11-24T08:07:39,411 writing dependency_links to spagrn.egg-info/dependency_links.txt 2023-11-24T08:07:39,415 writing entry points to spagrn.egg-info/entry_points.txt 2023-11-24T08:07:39,417 writing requirements to spagrn.egg-info/requires.txt 2023-11-24T08:07:39,419 writing top-level names to spagrn.egg-info/top_level.txt 2023-11-24T08:07:39,492 reading manifest file 'spagrn.egg-info/SOURCES.txt' 2023-11-24T08:07:39,496 adding license file 'LICENSE' 2023-11-24T08:07:39,503 writing manifest file 'spagrn.egg-info/SOURCES.txt' 2023-11-24T08:07:39,505 Copying spagrn.egg-info to build/bdist.linux-armv7l/wheel/spagrn-1.0.7-py3.7.egg-info 2023-11-24T08:07:39,526 running install_scripts 2023-11-24T08:07:39,566 creating build/bdist.linux-armv7l/wheel/spagrn-1.0.7.dist-info/WHEEL 2023-11-24T08:07:39,572 creating '/tmp/pip-wheel-ekbvndof/spagrn-1.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-24T08:07:39,578 adding 'spagrn/__init__.py' 2023-11-24T08:07:39,586 adding 'spagrn/auprc.py' 2023-11-24T08:07:39,590 adding 'spagrn/main.py' 2023-11-24T08:07:39,594 adding 'spagrn/network.py' 2023-11-24T08:07:39,597 adding 'spagrn/params.py' 2023-11-24T08:07:39,607 adding 'spagrn/plot.py' 2023-11-24T08:07:39,616 adding 'spagrn/regulatory_network.py' 2023-11-24T08:07:39,620 adding 'spagrn/results.py' 2023-11-24T08:07:39,623 adding 'spagrn/scoexp.py' 2023-11-24T08:07:39,627 adding 'spagrn/simulator.py' 2023-11-24T08:07:39,629 adding 'spagrn/spa_logger.py' 2023-11-24T08:07:39,633 adding 'spagrn/cli/__init__.py' 2023-11-24T08:07:39,638 adding 'spagrn/cli/spagrn_parser.py' 2023-11-24T08:07:39,656 adding 'spagrn-1.0.7.dist-info/LICENSE' 2023-11-24T08:07:39,658 adding 'spagrn-1.0.7.dist-info/METADATA' 2023-11-24T08:07:39,660 adding 'spagrn-1.0.7.dist-info/WHEEL' 2023-11-24T08:07:39,662 adding 'spagrn-1.0.7.dist-info/entry_points.txt' 2023-11-24T08:07:39,664 adding 'spagrn-1.0.7.dist-info/top_level.txt' 2023-11-24T08:07:39,666 adding 'spagrn-1.0.7.dist-info/RECORD' 2023-11-24T08:07:39,670 removing build/bdist.linux-armv7l/wheel 2023-11-24T08:07:39,858 Building wheel for spagrn (setup.py): finished with status 'done' 2023-11-24T08:07:39,867 Created wheel for spagrn: filename=spagrn-1.0.7-py3-none-any.whl size=52824 sha256=e2c87f477adc4bf0476402165c8b9521223404d0167ba78f80ad8b3b64f03eee 2023-11-24T08:07:39,869 Stored in directory: /tmp/pip-ephem-wheel-cache-pi9hwsze/wheels/e3/cd/24/de47909577f149e668c5b821575018f70a30e037fdc9b6e38b 2023-11-24T08:07:39,898 Successfully built spagrn 2023-11-24T08:07:39,908 Removed build tracker: '/tmp/pip-build-tracker-zjpiivrl'