2023-11-24T10:16:37,210 Created temporary directory: /tmp/pip-build-tracker-43s5pvc3
2023-11-24T10:16:37,212 Initialized build tracking at /tmp/pip-build-tracker-43s5pvc3
2023-11-24T10:16:37,212 Created build tracker: /tmp/pip-build-tracker-43s5pvc3
2023-11-24T10:16:37,212 Entered build tracker: /tmp/pip-build-tracker-43s5pvc3
2023-11-24T10:16:37,213 Created temporary directory: /tmp/pip-wheel-w9yc2_a3
2023-11-24T10:16:37,216 Created temporary directory: /tmp/pip-ephem-wheel-cache-ez40uths
2023-11-24T10:16:37,238 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T10:16:37,242 2 location(s) to search for versions of phlorest:
2023-11-24T10:16:37,242 * https://pypi.org/simple/phlorest/
2023-11-24T10:16:37,242 * https://www.piwheels.org/simple/phlorest/
2023-11-24T10:16:37,242 Fetching project page and analyzing links: https://pypi.org/simple/phlorest/
2023-11-24T10:16:37,243 Getting page https://pypi.org/simple/phlorest/
2023-11-24T10:16:37,245 Found index url https://pypi.org/simple/
2023-11-24T10:16:37,511 Fetched page https://pypi.org/simple/phlorest/ as application/vnd.pypi.simple.v1+json
2023-11-24T10:16:37,516   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/68/84/d55aef7f19f45bc7065d39a7d19d0c96367e220a127a7c4fcd66e8902a1c/phlorest-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.6)
2023-11-24T10:16:37,517   Found link https://files.pythonhosted.org/packages/18/a2/ff1bb5ba757092551a06ee02ed441819b48f37f9c72da78d0c9afccca7a2/phlorest-0.1.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.6), version: 0.1.0
2023-11-24T10:16:37,517   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/5e/4b/15a8fb4ffb221bc73c2e21c93062f51ac08c81b244ff18520bb0e87d7a2d/phlorest-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.7)
2023-11-24T10:16:37,518   Found link https://files.pythonhosted.org/packages/fb/68/748e320cc199984f8b1f969183d2898587c992319e4a06e9880c68a12386/phlorest-0.2.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.7), version: 0.2.0
2023-11-24T10:16:37,519   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/fe/08/065943bdc364468376ad2da0bf7736aefc3e79291f6dde47aa5958e8c2a1/phlorest-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,520   Found link https://files.pythonhosted.org/packages/f0/3d/19c73cfa040fe348519ad6d76257c41ceda631665d9d43d03cf481fc2442/phlorest-1.0.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.0.0
2023-11-24T10:16:37,521   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/fc/72/23541c7b8bd673681f2b2852006c6ec15530bab055f586af47347527f97d/phlorest-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,522   Found link https://files.pythonhosted.org/packages/38/6a/6e0e9a13d5947f97d8728b272c55c5d02130108f558cbd1b0cfea08d972c/phlorest-1.1.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.1.0
2023-11-24T10:16:37,523   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/5b/63/f978bb035c22a56f498995fbad6d994622f8d64b98e2b5b5b327a06fc675/phlorest-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,524   Found link https://files.pythonhosted.org/packages/47/4c/00fd1a08a6b39c1bf9d899a9c84e83741632c51c265686e6b13a160f6828/phlorest-1.2.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.2.0
2023-11-24T10:16:37,524   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/ac/a5/56d941f8be48b188f5c1197ac8023d8540f16712d746080d6e108c27c19a/phlorest-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,525   Found link https://files.pythonhosted.org/packages/90/40/9696525bb3dcc9b066ffd32a433ffdd620971abc8f46e983ab6f10bbf849/phlorest-1.3.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.3.0
2023-11-24T10:16:37,526   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/76/1a/c986721900c569f826a17727b47932590c6d454da7ecb1d9276bab1fbc20/phlorest-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,527   Found link https://files.pythonhosted.org/packages/c1/0c/06f13b182c76bfbd21ac6c852e77455268e9bb37cb58aac5502b54adafa5/phlorest-1.4.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.4.0
2023-11-24T10:16:37,528   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/78/b3/24ed02f1944a1981c1c6ec4bb1a0a6e045b9763d57a5f158810872e7c750/phlorest-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,529   Found link https://files.pythonhosted.org/packages/8c/7c/b74a46d990310c87b173026fe280ab0c24b52a7b5abc07f731b90c213158/phlorest-1.5.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.5.0
2023-11-24T10:16:37,529   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/d3/14/3cd8d1fa8bd6b30db78425c0cc9790304a482d1bd25ffb395700c38d2c95/phlorest-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,530   Found link https://files.pythonhosted.org/packages/07/4b/fc089d106829d93c369a94059ca73cd9ae62d1723b924ed7d54b97564f84/phlorest-1.6.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.6.0
2023-11-24T10:16:37,531   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/3e/78/aba0987e304e095ada6044ac2c808d1ae5fbff197b4d2f7a733584bf79a5/phlorest-1.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,531   Found link https://files.pythonhosted.org/packages/36/9c/00f599906accc282099a23060173e5e8e4a877a8d434d4d25c943b1cbe25/phlorest-1.6.1.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.6.1
2023-11-24T10:16:37,532 Fetching project page and analyzing links: https://www.piwheels.org/simple/phlorest/
2023-11-24T10:16:37,533 Getting page https://www.piwheels.org/simple/phlorest/
2023-11-24T10:16:37,534 Found index url https://www.piwheels.org/simple/
2023-11-24T10:16:37,698 Fetched page https://www.piwheels.org/simple/phlorest/ as text/html
2023-11-24T10:16:37,702   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.4.0-py2.py3-none-any.whl#sha256=144838360ea2605b99f827781cf8db89c81b98172be2a9a3bcbb226c77c4b714 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,702   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.3.0-py2.py3-none-any.whl#sha256=3a0aff67000b0aa61e6e581b580ed356e0859dccd4f984e381b170a4d662a856 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,703   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.2.0-py2.py3-none-any.whl#sha256=d90b3427438a2114114bcbb52c2574309b22b042b1969b1d8cd4640335b6d27f (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,704   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.1.0-py2.py3-none-any.whl#sha256=b0b9765b5a32ff4959d3b0f3216ab838f5b3cde0e4e13b1e66e1518797dd4fe6 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,704   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.0.0-py2.py3-none-any.whl#sha256=f38de7963cec843e957835cb6240fbdb10a4c82f5dc8fa3291a7043157b69878 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T10:16:37,705   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-0.2.0-py2.py3-none-any.whl#sha256=c70cac5b0516907ee4e85bb706ae6b037b80eb40cb562277da6966a09f63d958 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.7)
2023-11-24T10:16:37,705   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-0.1.0-py2.py3-none-any.whl#sha256=be41f2262ab933e60fd603edb07bfc90c7d1b494aedaf3ab0ce28478fd62770d (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.6)
2023-11-24T10:16:37,706 Skipping link: not a file: https://www.piwheels.org/simple/phlorest/
2023-11-24T10:16:37,706 Skipping link: not a file: https://pypi.org/simple/phlorest/
2023-11-24T10:16:37,732 Given no hashes to check 1 links for project 'phlorest': discarding no candidates
2023-11-24T10:16:37,760 Collecting phlorest==1.5.0
2023-11-24T10:16:37,763   Created temporary directory: /tmp/pip-unpack-7gfpwiqo
2023-11-24T10:16:37,921   Downloading phlorest-1.5.0.tar.gz (27 kB)
2023-11-24T10:16:38,026   Added phlorest==1.5.0 from https://files.pythonhosted.org/packages/8c/7c/b74a46d990310c87b173026fe280ab0c24b52a7b5abc07f731b90c213158/phlorest-1.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-43s5pvc3'
2023-11-24T10:16:38,029   Created temporary directory: /tmp/pip-build-env-pzk5oe4f
2023-11-24T10:16:38,034   Installing build dependencies: started
2023-11-24T10:16:38,035   Running command pip subprocess to install build dependencies
2023-11-24T10:16:39,176   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-11-24T10:16:39,689   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T10:16:41,298   Collecting setuptools
2023-11-24T10:16:41,299     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl.metadata
2023-11-24T10:16:41,305     Using cached setuptools-69.0.2-py3-none-any.whl.metadata (6.3 kB)
2023-11-24T10:16:41,474   Using cached setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-11-24T10:16:43,918   Installing collected packages: setuptools
2023-11-24T10:16:46,163   Successfully installed setuptools-69.0.2

2023-11-24T10:16:46,431   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-24T10:16:46,431   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-24T10:16:46,697   Installing build dependencies: finished with status 'done'
2023-11-24T10:16:46,701   Getting requirements to build wheel: started
2023-11-24T10:16:46,702   Running command Getting requirements to build wheel
2023-11-24T10:16:47,382   running egg_info
2023-11-24T10:16:47,385   writing src/phlorest.egg-info/PKG-INFO
2023-11-24T10:16:47,392   writing dependency_links to src/phlorest.egg-info/dependency_links.txt
2023-11-24T10:16:47,394   writing entry points to src/phlorest.egg-info/entry_points.txt
2023-11-24T10:16:47,398   writing requirements to src/phlorest.egg-info/requires.txt
2023-11-24T10:16:47,399   writing top-level names to src/phlorest.egg-info/top_level.txt
2023-11-24T10:16:47,419   reading manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:47,422   reading manifest template 'MANIFEST.in'
2023-11-24T10:16:47,427   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T10:16:47,428   adding license file 'LICENSE'
2023-11-24T10:16:47,431   writing manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:47,508   Getting requirements to build wheel: finished with status 'done'
2023-11-24T10:16:47,517   Installing backend dependencies: started
2023-11-24T10:16:47,519   Running command pip subprocess to install backend dependencies
2023-11-24T10:16:48,903   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-11-24T10:16:49,408   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T10:16:49,913   Collecting wheel
2023-11-24T10:16:49,929     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB)
2023-11-24T10:16:52,129   Installing collected packages: wheel
2023-11-24T10:16:52,351     Creating /tmp/pip-build-env-pzk5oe4f/normal/local/bin
2023-11-24T10:16:52,353     changing mode of /tmp/pip-build-env-pzk5oe4f/normal/local/bin/wheel to 755
2023-11-24T10:16:52,365   Successfully installed wheel-0.41.3

2023-11-24T10:16:52,634   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-24T10:16:52,635   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-24T10:16:52,865   Installing backend dependencies: finished with status 'done'
2023-11-24T10:16:52,866   Created temporary directory: /tmp/pip-modern-metadata-uq9b0_wg
2023-11-24T10:16:52,868   Preparing metadata (pyproject.toml): started
2023-11-24T10:16:52,870   Running command Preparing metadata (pyproject.toml)
2023-11-24T10:16:53,437   running dist_info
2023-11-24T10:16:53,458   creating /tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info
2023-11-24T10:16:53,462   writing /tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/PKG-INFO
2023-11-24T10:16:53,472   writing dependency_links to /tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/dependency_links.txt
2023-11-24T10:16:53,474   writing entry points to /tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/entry_points.txt
2023-11-24T10:16:53,478   writing requirements to /tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/requires.txt
2023-11-24T10:16:53,479   writing top-level names to /tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/top_level.txt
2023-11-24T10:16:53,480   writing manifest file '/tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:53,502   reading manifest file '/tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:53,504   reading manifest template 'MANIFEST.in'
2023-11-24T10:16:53,510   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T10:16:53,511   adding license file 'LICENSE'
2023-11-24T10:16:53,513   writing manifest file '/tmp/pip-modern-metadata-uq9b0_wg/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:53,514   creating '/tmp/pip-modern-metadata-uq9b0_wg/phlorest-1.5.0.dist-info'
2023-11-24T10:16:53,707   Preparing metadata (pyproject.toml): finished with status 'done'
2023-11-24T10:16:53,712   Source in /tmp/pip-wheel-w9yc2_a3/phlorest_a3ffc7ac58284c1e9645bcc6eb3a8c13 has version 1.5.0, which satisfies requirement phlorest==1.5.0 from https://files.pythonhosted.org/packages/8c/7c/b74a46d990310c87b173026fe280ab0c24b52a7b5abc07f731b90c213158/phlorest-1.5.0.tar.gz
2023-11-24T10:16:53,713   Removed phlorest==1.5.0 from https://files.pythonhosted.org/packages/8c/7c/b74a46d990310c87b173026fe280ab0c24b52a7b5abc07f731b90c213158/phlorest-1.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-43s5pvc3'
2023-11-24T10:16:53,719 Created temporary directory: /tmp/pip-unpack-wuc_rqsp
2023-11-24T10:16:53,720 Created temporary directory: /tmp/pip-unpack-8hkroq4b
2023-11-24T10:16:53,763 Building wheels for collected packages: phlorest
2023-11-24T10:16:53,767   Created temporary directory: /tmp/pip-wheel-3iis_dcp
2023-11-24T10:16:53,767   Destination directory: /tmp/pip-wheel-3iis_dcp
2023-11-24T10:16:53,770   Building wheel for phlorest (pyproject.toml): started
2023-11-24T10:16:53,771   Running command Building wheel for phlorest (pyproject.toml)
2023-11-24T10:16:54,379   running bdist_wheel
2023-11-24T10:16:54,420   running build
2023-11-24T10:16:54,421   running build_py
2023-11-24T10:16:54,428   creating build
2023-11-24T10:16:54,429   creating build/lib
2023-11-24T10:16:54,429   creating build/lib/phlorest
2023-11-24T10:16:54,431   copying src/phlorest/__init__.py -> build/lib/phlorest
2023-11-24T10:16:54,433   copying src/phlorest/nexuslib.py -> build/lib/phlorest
2023-11-24T10:16:54,434   copying src/phlorest/scaffold.py -> build/lib/phlorest
2023-11-24T10:16:54,436   copying src/phlorest/beast.py -> build/lib/phlorest
2023-11-24T10:16:54,438   copying src/phlorest/metadata.py -> build/lib/phlorest
2023-11-24T10:16:54,440   copying src/phlorest/dataset.py -> build/lib/phlorest
2023-11-24T10:16:54,442   copying src/phlorest/check.py -> build/lib/phlorest
2023-11-24T10:16:54,444   copying src/phlorest/__main__.py -> build/lib/phlorest
2023-11-24T10:16:54,445   copying src/phlorest/cldfwriter.py -> build/lib/phlorest
2023-11-24T10:16:54,448   creating build/lib/phlorest/commands
2023-11-24T10:16:54,449   copying src/phlorest/commands/__init__.py -> build/lib/phlorest/commands
2023-11-24T10:16:54,450   copying src/phlorest/commands/merge_characters.py -> build/lib/phlorest/commands
2023-11-24T10:16:54,452   copying src/phlorest/commands/contrib.py -> build/lib/phlorest/commands
2023-11-24T10:16:54,454   copying src/phlorest/commands/check.py -> build/lib/phlorest/commands
2023-11-24T10:16:54,455   copying src/phlorest/commands/release.py -> build/lib/phlorest/commands
2023-11-24T10:16:54,456   running egg_info
2023-11-24T10:16:54,460   writing src/phlorest.egg-info/PKG-INFO
2023-11-24T10:16:54,466   writing dependency_links to src/phlorest.egg-info/dependency_links.txt
2023-11-24T10:16:54,468   writing entry points to src/phlorest.egg-info/entry_points.txt
2023-11-24T10:16:54,471   writing requirements to src/phlorest.egg-info/requires.txt
2023-11-24T10:16:54,472   writing top-level names to src/phlorest.egg-info/top_level.txt
2023-11-24T10:16:54,481   reading manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:54,484   reading manifest template 'MANIFEST.in'
2023-11-24T10:16:54,488   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T10:16:54,489   adding license file 'LICENSE'
2023-11-24T10:16:54,491   writing manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T10:16:54,494   /tmp/pip-build-env-pzk5oe4f/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'phlorest.phlorest_template' is absent from the `packages` configuration.
2023-11-24T10:16:54,495   !!

2023-11-24T10:16:54,496           ********************************************************************************
2023-11-24T10:16:54,496           ############################
2023-11-24T10:16:54,497           # Package would be ignored #
2023-11-24T10:16:54,497           ############################
2023-11-24T10:16:54,498           Python recognizes 'phlorest.phlorest_template' as an importable package[^1],
2023-11-24T10:16:54,498           but it is absent from setuptools' `packages` configuration.

2023-11-24T10:16:54,499           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T10:16:54,500           package, please make sure that 'phlorest.phlorest_template' is explicitly added
2023-11-24T10:16:54,500           to the `packages` configuration field.

2023-11-24T10:16:54,501           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T10:16:54,502           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T10:16:54,502           instead of `find_packages(...)`/`find:`).

2023-11-24T10:16:54,503           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T10:16:54,504           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T10:16:54,505           If you don't want 'phlorest.phlorest_template' to be distributed and are
2023-11-24T10:16:54,506           already explicitly excluding 'phlorest.phlorest_template' via
2023-11-24T10:16:54,506           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T10:16:54,507           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T10:16:54,507           combination with a more fine grained `package-data` configuration.

2023-11-24T10:16:54,508           You can read more about "package data files" on setuptools documentation page:

2023-11-24T10:16:54,510           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T10:16:54,511           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T10:16:54,511                 even if it does not contain any `.py` files.
2023-11-24T10:16:54,512                 On the other hand, currently there is no concept of package data
2023-11-24T10:16:54,512                 directory, all directories are treated like packages.
2023-11-24T10:16:54,513           ********************************************************************************

2023-11-24T10:16:54,514   !!
2023-11-24T10:16:54,514     check.warn(importable)
2023-11-24T10:16:54,515   /tmp/pip-build-env-pzk5oe4f/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'phlorest.phlorest_template.etc' is absent from the `packages` configuration.
2023-11-24T10:16:54,515   !!

2023-11-24T10:16:54,516           ********************************************************************************
2023-11-24T10:16:54,516           ############################
2023-11-24T10:16:54,517           # Package would be ignored #
2023-11-24T10:16:54,517           ############################
2023-11-24T10:16:54,518           Python recognizes 'phlorest.phlorest_template.etc' as an importable package[^1],
2023-11-24T10:16:54,518           but it is absent from setuptools' `packages` configuration.

2023-11-24T10:16:54,519           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T10:16:54,520           package, please make sure that 'phlorest.phlorest_template.etc' is explicitly added
2023-11-24T10:16:54,520           to the `packages` configuration field.

2023-11-24T10:16:54,521           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T10:16:54,522           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T10:16:54,522           instead of `find_packages(...)`/`find:`).

2023-11-24T10:16:54,523           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T10:16:54,525           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T10:16:54,526           If you don't want 'phlorest.phlorest_template.etc' to be distributed and are
2023-11-24T10:16:54,526           already explicitly excluding 'phlorest.phlorest_template.etc' via
2023-11-24T10:16:54,527           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T10:16:54,527           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T10:16:54,528           combination with a more fine grained `package-data` configuration.

2023-11-24T10:16:54,529           You can read more about "package data files" on setuptools documentation page:

2023-11-24T10:16:54,530           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T10:16:54,532           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T10:16:54,532                 even if it does not contain any `.py` files.
2023-11-24T10:16:54,533                 On the other hand, currently there is no concept of package data
2023-11-24T10:16:54,533                 directory, all directories are treated like packages.
2023-11-24T10:16:54,534           ********************************************************************************

2023-11-24T10:16:54,535   !!
2023-11-24T10:16:54,536     check.warn(importable)
2023-11-24T10:16:54,536   copying src/phlorest/check.R -> build/lib/phlorest
2023-11-24T10:16:54,537   creating build/lib/phlorest/phlorest_template
2023-11-24T10:16:54,537   copying src/phlorest/phlorest_template/cldfbench_+id+.py_tmpl -> build/lib/phlorest/phlorest_template
2023-11-24T10:16:54,538   copying src/phlorest/phlorest_template/setup.cfg -> build/lib/phlorest/phlorest_template
2023-11-24T10:16:54,539   copying src/phlorest/phlorest_template/setup.py_tmpl -> build/lib/phlorest/phlorest_template
2023-11-24T10:16:54,539   copying src/phlorest/phlorest_template/test.py -> build/lib/phlorest/phlorest_template
2023-11-24T10:16:54,540   creating build/lib/phlorest/phlorest_template/.github
2023-11-24T10:16:54,541   creating build/lib/phlorest/phlorest_template/.github/workflows
2023-11-24T10:16:54,541   copying src/phlorest/phlorest_template/.github/workflows/cldf-validation.yml -> build/lib/phlorest/phlorest_template/.github/workflows
2023-11-24T10:16:54,542   creating build/lib/phlorest/phlorest_template/etc
2023-11-24T10:16:54,542   copying src/phlorest/phlorest_template/etc/characters.csv -> build/lib/phlorest/phlorest_template/etc
2023-11-24T10:16:54,542   copying src/phlorest/phlorest_template/etc/taxa.csv -> build/lib/phlorest/phlorest_template/etc
2023-11-24T10:16:54,543   installing to build/bdist.linux-armv7l/wheel
2023-11-24T10:16:54,543   running install
2023-11-24T10:16:54,559   running install_lib
2023-11-24T10:16:54,566   creating build/bdist.linux-armv7l
2023-11-24T10:16:54,566   creating build/bdist.linux-armv7l/wheel
2023-11-24T10:16:54,568   creating build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,569   copying build/lib/phlorest/__init__.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,571   copying build/lib/phlorest/nexuslib.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,573   copying build/lib/phlorest/scaffold.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,574   copying build/lib/phlorest/beast.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,576   copying build/lib/phlorest/metadata.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,578   creating build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T10:16:54,579   copying build/lib/phlorest/commands/__init__.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T10:16:54,581   copying build/lib/phlorest/commands/merge_characters.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T10:16:54,582   copying build/lib/phlorest/commands/contrib.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T10:16:54,584   copying build/lib/phlorest/commands/check.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T10:16:54,586   copying build/lib/phlorest/commands/release.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T10:16:54,588   copying build/lib/phlorest/dataset.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,590   copying build/lib/phlorest/check.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,592   copying build/lib/phlorest/__main__.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,594   copying build/lib/phlorest/cldfwriter.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,596   copying build/lib/phlorest/check.R -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T10:16:54,598   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T10:16:54,600   copying build/lib/phlorest/phlorest_template/setup.py_tmpl -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T10:16:54,602   copying build/lib/phlorest/phlorest_template/setup.cfg -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T10:16:54,603   copying build/lib/phlorest/phlorest_template/cldfbench_+id+.py_tmpl -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T10:16:54,605   copying build/lib/phlorest/phlorest_template/test.py -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T10:16:54,607   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github
2023-11-24T10:16:54,608   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github/workflows
2023-11-24T10:16:54,609   copying build/lib/phlorest/phlorest_template/.github/workflows/cldf-validation.yml -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github/workflows
2023-11-24T10:16:54,612   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T10:16:54,613   copying build/lib/phlorest/phlorest_template/etc/characters.csv -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T10:16:54,615   copying build/lib/phlorest/phlorest_template/etc/taxa.csv -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T10:16:54,616   running install_egg_info
2023-11-24T10:16:54,626   Copying src/phlorest.egg-info to build/bdist.linux-armv7l/wheel/phlorest-1.5.0-py3.11.egg-info
2023-11-24T10:16:54,639   running install_scripts
2023-11-24T10:16:54,658   creating build/bdist.linux-armv7l/wheel/phlorest-1.5.0.dist-info/WHEEL
2023-11-24T10:16:54,661   creating '/tmp/pip-wheel-3iis_dcp/.tmp-sgn4fjde/phlorest-1.5.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-24T10:16:54,663   adding 'phlorest/__init__.py'
2023-11-24T10:16:54,665   adding 'phlorest/__main__.py'
2023-11-24T10:16:54,666   adding 'phlorest/beast.py'
2023-11-24T10:16:54,668   adding 'phlorest/check.R'
2023-11-24T10:16:54,669   adding 'phlorest/check.py'
2023-11-24T10:16:54,671   adding 'phlorest/cldfwriter.py'
2023-11-24T10:16:54,673   adding 'phlorest/dataset.py'
2023-11-24T10:16:54,675   adding 'phlorest/metadata.py'
2023-11-24T10:16:54,676   adding 'phlorest/nexuslib.py'
2023-11-24T10:16:54,678   adding 'phlorest/scaffold.py'
2023-11-24T10:16:54,679   adding 'phlorest/commands/__init__.py'
2023-11-24T10:16:54,680   adding 'phlorest/commands/check.py'
2023-11-24T10:16:54,682   adding 'phlorest/commands/contrib.py'
2023-11-24T10:16:54,683   adding 'phlorest/commands/merge_characters.py'
2023-11-24T10:16:54,684   adding 'phlorest/commands/release.py'
2023-11-24T10:16:54,686   adding 'phlorest/phlorest_template/cldfbench_+id+.py_tmpl'
2023-11-24T10:16:54,687   adding 'phlorest/phlorest_template/setup.cfg'
2023-11-24T10:16:54,688   adding 'phlorest/phlorest_template/setup.py_tmpl'
2023-11-24T10:16:54,690   adding 'phlorest/phlorest_template/test.py'
2023-11-24T10:16:54,692   adding 'phlorest/phlorest_template/.github/workflows/cldf-validation.yml'
2023-11-24T10:16:54,694   adding 'phlorest/phlorest_template/etc/characters.csv'
2023-11-24T10:16:54,695   adding 'phlorest/phlorest_template/etc/taxa.csv'
2023-11-24T10:16:54,698   adding 'phlorest-1.5.0.dist-info/LICENSE'
2023-11-24T10:16:54,699   adding 'phlorest-1.5.0.dist-info/METADATA'
2023-11-24T10:16:54,700   adding 'phlorest-1.5.0.dist-info/WHEEL'
2023-11-24T10:16:54,701   adding 'phlorest-1.5.0.dist-info/entry_points.txt'
2023-11-24T10:16:54,702   adding 'phlorest-1.5.0.dist-info/top_level.txt'
2023-11-24T10:16:54,703   adding 'phlorest-1.5.0.dist-info/RECORD'
2023-11-24T10:16:54,705   removing build/bdist.linux-armv7l/wheel
2023-11-24T10:16:54,806   Building wheel for phlorest (pyproject.toml): finished with status 'done'
2023-11-24T10:16:54,812   Created wheel for phlorest: filename=phlorest-1.5.0-py2.py3-none-any.whl size=27906 sha256=55c9c10fe457da1de608280bba6b795b6ee128932b6f573f8d1948fcb234e417
2023-11-24T10:16:54,813   Stored in directory: /tmp/pip-ephem-wheel-cache-ez40uths/wheels/f4/c0/5d/c7d7f47402211e9f380806272b0c2d06bef2040a827ee630d1
2023-11-24T10:16:54,826 Successfully built phlorest
2023-11-24T10:16:54,830 Removed build tracker: '/tmp/pip-build-tracker-43s5pvc3'