2023-11-24T17:24:25,398 Created temporary directory: /tmp/pip-build-tracker-bulikutl
2023-11-24T17:24:25,399 Initialized build tracking at /tmp/pip-build-tracker-bulikutl
2023-11-24T17:24:25,400 Created build tracker: /tmp/pip-build-tracker-bulikutl
2023-11-24T17:24:25,400 Entered build tracker: /tmp/pip-build-tracker-bulikutl
2023-11-24T17:24:25,401 Created temporary directory: /tmp/pip-wheel-o6f79gpd
2023-11-24T17:24:25,404 Created temporary directory: /tmp/pip-ephem-wheel-cache-rsi2nfp0
2023-11-24T17:24:25,427 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T17:24:25,431 2 location(s) to search for versions of phlorest:
2023-11-24T17:24:25,431 * https://pypi.org/simple/phlorest/
2023-11-24T17:24:25,431 * https://www.piwheels.org/simple/phlorest/
2023-11-24T17:24:25,432 Fetching project page and analyzing links: https://pypi.org/simple/phlorest/
2023-11-24T17:24:25,432 Getting page https://pypi.org/simple/phlorest/
2023-11-24T17:24:25,434 Found index url https://pypi.org/simple/
2023-11-24T17:24:25,694 Fetched page https://pypi.org/simple/phlorest/ as application/vnd.pypi.simple.v1+json
2023-11-24T17:24:25,699   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/68/84/d55aef7f19f45bc7065d39a7d19d0c96367e220a127a7c4fcd66e8902a1c/phlorest-0.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.6)
2023-11-24T17:24:25,700   Found link https://files.pythonhosted.org/packages/18/a2/ff1bb5ba757092551a06ee02ed441819b48f37f9c72da78d0c9afccca7a2/phlorest-0.1.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.6), version: 0.1.0
2023-11-24T17:24:25,700   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/5e/4b/15a8fb4ffb221bc73c2e21c93062f51ac08c81b244ff18520bb0e87d7a2d/phlorest-0.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.7)
2023-11-24T17:24:25,701   Found link https://files.pythonhosted.org/packages/fb/68/748e320cc199984f8b1f969183d2898587c992319e4a06e9880c68a12386/phlorest-0.2.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.7), version: 0.2.0
2023-11-24T17:24:25,702   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/fe/08/065943bdc364468376ad2da0bf7736aefc3e79291f6dde47aa5958e8c2a1/phlorest-1.0.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,703   Found link https://files.pythonhosted.org/packages/f0/3d/19c73cfa040fe348519ad6d76257c41ceda631665d9d43d03cf481fc2442/phlorest-1.0.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.0.0
2023-11-24T17:24:25,704   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/fc/72/23541c7b8bd673681f2b2852006c6ec15530bab055f586af47347527f97d/phlorest-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,705   Found link https://files.pythonhosted.org/packages/38/6a/6e0e9a13d5947f97d8728b272c55c5d02130108f558cbd1b0cfea08d972c/phlorest-1.1.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.1.0
2023-11-24T17:24:25,706   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/5b/63/f978bb035c22a56f498995fbad6d994622f8d64b98e2b5b5b327a06fc675/phlorest-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,707   Found link https://files.pythonhosted.org/packages/47/4c/00fd1a08a6b39c1bf9d899a9c84e83741632c51c265686e6b13a160f6828/phlorest-1.2.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.2.0
2023-11-24T17:24:25,707   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/ac/a5/56d941f8be48b188f5c1197ac8023d8540f16712d746080d6e108c27c19a/phlorest-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,708   Found link https://files.pythonhosted.org/packages/90/40/9696525bb3dcc9b066ffd32a433ffdd620971abc8f46e983ab6f10bbf849/phlorest-1.3.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.3.0
2023-11-24T17:24:25,709   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/76/1a/c986721900c569f826a17727b47932590c6d454da7ecb1d9276bab1fbc20/phlorest-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,710   Found link https://files.pythonhosted.org/packages/c1/0c/06f13b182c76bfbd21ac6c852e77455268e9bb37cb58aac5502b54adafa5/phlorest-1.4.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.4.0
2023-11-24T17:24:25,711   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/78/b3/24ed02f1944a1981c1c6ec4bb1a0a6e045b9763d57a5f158810872e7c750/phlorest-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,711   Found link https://files.pythonhosted.org/packages/8c/7c/b74a46d990310c87b173026fe280ab0c24b52a7b5abc07f731b90c213158/phlorest-1.5.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.5.0
2023-11-24T17:24:25,712   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/d3/14/3cd8d1fa8bd6b30db78425c0cc9790304a482d1bd25ffb395700c38d2c95/phlorest-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,713   Found link https://files.pythonhosted.org/packages/07/4b/fc089d106829d93c369a94059ca73cd9ae62d1723b924ed7d54b97564f84/phlorest-1.6.0.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.6.0
2023-11-24T17:24:25,714   Skipping link: No binaries permitted for phlorest: https://files.pythonhosted.org/packages/3e/78/aba0987e304e095ada6044ac2c808d1ae5fbff197b4d2f7a733584bf79a5/phlorest-1.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,714   Found link https://files.pythonhosted.org/packages/36/9c/00f599906accc282099a23060173e5e8e4a877a8d434d4d25c943b1cbe25/phlorest-1.6.1.tar.gz (from https://pypi.org/simple/phlorest/) (requires-python:>=3.8), version: 1.6.1
2023-11-24T17:24:25,715 Fetching project page and analyzing links: https://www.piwheels.org/simple/phlorest/
2023-11-24T17:24:25,716 Getting page https://www.piwheels.org/simple/phlorest/
2023-11-24T17:24:25,718 Found index url https://www.piwheels.org/simple/
2023-11-24T17:24:25,887 Fetched page https://www.piwheels.org/simple/phlorest/ as text/html
2023-11-24T17:24:25,890   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.5.0-py2.py3-none-any.whl#sha256=55c9c10fe457da1de608280bba6b795b6ee128932b6f573f8d1948fcb234e417 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,891   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.4.0-py2.py3-none-any.whl#sha256=144838360ea2605b99f827781cf8db89c81b98172be2a9a3bcbb226c77c4b714 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,892   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.3.0-py2.py3-none-any.whl#sha256=3a0aff67000b0aa61e6e581b580ed356e0859dccd4f984e381b170a4d662a856 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,892   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.2.0-py2.py3-none-any.whl#sha256=d90b3427438a2114114bcbb52c2574309b22b042b1969b1d8cd4640335b6d27f (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,893   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.1.0-py2.py3-none-any.whl#sha256=b0b9765b5a32ff4959d3b0f3216ab838f5b3cde0e4e13b1e66e1518797dd4fe6 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,893   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-1.0.0-py2.py3-none-any.whl#sha256=f38de7963cec843e957835cb6240fbdb10a4c82f5dc8fa3291a7043157b69878 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.8)
2023-11-24T17:24:25,894   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-0.2.0-py2.py3-none-any.whl#sha256=c70cac5b0516907ee4e85bb706ae6b037b80eb40cb562277da6966a09f63d958 (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.7)
2023-11-24T17:24:25,895   Skipping link: No binaries permitted for phlorest: https://www.piwheels.org/simple/phlorest/phlorest-0.1.0-py2.py3-none-any.whl#sha256=be41f2262ab933e60fd603edb07bfc90c7d1b494aedaf3ab0ce28478fd62770d (from https://www.piwheels.org/simple/phlorest/) (requires-python:>=3.6)
2023-11-24T17:24:25,895 Skipping link: not a file: https://www.piwheels.org/simple/phlorest/
2023-11-24T17:24:25,896 Skipping link: not a file: https://pypi.org/simple/phlorest/
2023-11-24T17:24:25,916 Given no hashes to check 1 links for project 'phlorest': discarding no candidates
2023-11-24T17:24:25,936 Collecting phlorest==1.6.0
2023-11-24T17:24:25,938   Created temporary directory: /tmp/pip-unpack-c4yqrclh
2023-11-24T17:24:26,075   Downloading phlorest-1.6.0.tar.gz (27 kB)
2023-11-24T17:24:26,167   Added phlorest==1.6.0 from https://files.pythonhosted.org/packages/07/4b/fc089d106829d93c369a94059ca73cd9ae62d1723b924ed7d54b97564f84/phlorest-1.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-bulikutl'
2023-11-24T17:24:26,170   Created temporary directory: /tmp/pip-build-env-_6d3fa_7
2023-11-24T17:24:26,174   Installing build dependencies: started
2023-11-24T17:24:26,175   Running command pip subprocess to install build dependencies
2023-11-24T17:24:27,311   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-11-24T17:24:27,795   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T17:24:29,369   Collecting setuptools
2023-11-24T17:24:29,370     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl.metadata
2023-11-24T17:24:29,376     Using cached setuptools-69.0.2-py3-none-any.whl.metadata (6.3 kB)
2023-11-24T17:24:29,544   Using cached setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-11-24T17:24:32,007   Installing collected packages: setuptools
2023-11-24T17:24:34,210   Successfully installed setuptools-69.0.2

2023-11-24T17:24:34,516   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-24T17:24:34,516   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-24T17:24:34,783   Installing build dependencies: finished with status 'done'
2023-11-24T17:24:34,786   Getting requirements to build wheel: started
2023-11-24T17:24:34,787   Running command Getting requirements to build wheel
2023-11-24T17:24:35,479   running egg_info
2023-11-24T17:24:35,483   writing src/phlorest.egg-info/PKG-INFO
2023-11-24T17:24:35,490   writing dependency_links to src/phlorest.egg-info/dependency_links.txt
2023-11-24T17:24:35,492   writing entry points to src/phlorest.egg-info/entry_points.txt
2023-11-24T17:24:35,496   writing requirements to src/phlorest.egg-info/requires.txt
2023-11-24T17:24:35,497   writing top-level names to src/phlorest.egg-info/top_level.txt
2023-11-24T17:24:35,516   reading manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:35,519   reading manifest template 'MANIFEST.in'
2023-11-24T17:24:35,524   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T17:24:35,525   adding license file 'LICENSE'
2023-11-24T17:24:35,528   writing manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:35,605   Getting requirements to build wheel: finished with status 'done'
2023-11-24T17:24:35,614   Installing backend dependencies: started
2023-11-24T17:24:35,615   Running command pip subprocess to install backend dependencies
2023-11-24T17:24:36,770   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-11-24T17:24:37,255   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T17:24:37,769   Collecting wheel
2023-11-24T17:24:37,787     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB)
2023-11-24T17:24:39,989   Installing collected packages: wheel
2023-11-24T17:24:40,209     Creating /tmp/pip-build-env-_6d3fa_7/normal/local/bin
2023-11-24T17:24:40,211     changing mode of /tmp/pip-build-env-_6d3fa_7/normal/local/bin/wheel to 755
2023-11-24T17:24:40,223   Successfully installed wheel-0.41.3

2023-11-24T17:24:40,500   [notice] A new release of pip is available: 23.2.1 -> 23.3.1
2023-11-24T17:24:40,501   [notice] To update, run: python3 -m pip install --upgrade pip
2023-11-24T17:24:40,731   Installing backend dependencies: finished with status 'done'
2023-11-24T17:24:40,732   Created temporary directory: /tmp/pip-modern-metadata-pxy76o1i
2023-11-24T17:24:40,735   Preparing metadata (pyproject.toml): started
2023-11-24T17:24:40,736   Running command Preparing metadata (pyproject.toml)
2023-11-24T17:24:41,319   running dist_info
2023-11-24T17:24:41,340   creating /tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info
2023-11-24T17:24:41,343   writing /tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/PKG-INFO
2023-11-24T17:24:41,353   writing dependency_links to /tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/dependency_links.txt
2023-11-24T17:24:41,355   writing entry points to /tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/entry_points.txt
2023-11-24T17:24:41,359   writing requirements to /tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/requires.txt
2023-11-24T17:24:41,360   writing top-level names to /tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/top_level.txt
2023-11-24T17:24:41,361   writing manifest file '/tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:41,382   reading manifest file '/tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:41,384   reading manifest template 'MANIFEST.in'
2023-11-24T17:24:41,388   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T17:24:41,389   adding license file 'LICENSE'
2023-11-24T17:24:41,391   writing manifest file '/tmp/pip-modern-metadata-pxy76o1i/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:41,392   creating '/tmp/pip-modern-metadata-pxy76o1i/phlorest-1.6.0.dist-info'
2023-11-24T17:24:41,585   Preparing metadata (pyproject.toml): finished with status 'done'
2023-11-24T17:24:41,589   Source in /tmp/pip-wheel-o6f79gpd/phlorest_05b61806250646a68ec7d704f03f00f0 has version 1.6.0, which satisfies requirement phlorest==1.6.0 from https://files.pythonhosted.org/packages/07/4b/fc089d106829d93c369a94059ca73cd9ae62d1723b924ed7d54b97564f84/phlorest-1.6.0.tar.gz
2023-11-24T17:24:41,590   Removed phlorest==1.6.0 from https://files.pythonhosted.org/packages/07/4b/fc089d106829d93c369a94059ca73cd9ae62d1723b924ed7d54b97564f84/phlorest-1.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-bulikutl'
2023-11-24T17:24:41,596 Created temporary directory: /tmp/pip-unpack-vcgjn7v0
2023-11-24T17:24:41,597 Created temporary directory: /tmp/pip-unpack-0a_hq7yq
2023-11-24T17:24:41,640 Building wheels for collected packages: phlorest
2023-11-24T17:24:41,644   Created temporary directory: /tmp/pip-wheel-afq9ok74
2023-11-24T17:24:41,645   Destination directory: /tmp/pip-wheel-afq9ok74
2023-11-24T17:24:41,647   Building wheel for phlorest (pyproject.toml): started
2023-11-24T17:24:41,648   Running command Building wheel for phlorest (pyproject.toml)
2023-11-24T17:24:42,297   running bdist_wheel
2023-11-24T17:24:42,344   running build
2023-11-24T17:24:42,345   running build_py
2023-11-24T17:24:42,352   creating build
2023-11-24T17:24:42,353   creating build/lib
2023-11-24T17:24:42,354   creating build/lib/phlorest
2023-11-24T17:24:42,356   copying src/phlorest/__main__.py -> build/lib/phlorest
2023-11-24T17:24:42,367   copying src/phlorest/__init__.py -> build/lib/phlorest
2023-11-24T17:24:42,369   copying src/phlorest/metadata.py -> build/lib/phlorest
2023-11-24T17:24:42,371   copying src/phlorest/cldfwriter.py -> build/lib/phlorest
2023-11-24T17:24:42,374   copying src/phlorest/dataset.py -> build/lib/phlorest
2023-11-24T17:24:42,377   copying src/phlorest/scaffold.py -> build/lib/phlorest
2023-11-24T17:24:42,379   copying src/phlorest/check.py -> build/lib/phlorest
2023-11-24T17:24:42,381   copying src/phlorest/beast.py -> build/lib/phlorest
2023-11-24T17:24:42,384   copying src/phlorest/nexuslib.py -> build/lib/phlorest
2023-11-24T17:24:42,387   creating build/lib/phlorest/commands
2023-11-24T17:24:42,388   copying src/phlorest/commands/release.py -> build/lib/phlorest/commands
2023-11-24T17:24:42,390   copying src/phlorest/commands/__init__.py -> build/lib/phlorest/commands
2023-11-24T17:24:42,392   copying src/phlorest/commands/merge_characters.py -> build/lib/phlorest/commands
2023-11-24T17:24:42,394   copying src/phlorest/commands/contrib.py -> build/lib/phlorest/commands
2023-11-24T17:24:42,396   copying src/phlorest/commands/check.py -> build/lib/phlorest/commands
2023-11-24T17:24:42,398   running egg_info
2023-11-24T17:24:42,402   writing src/phlorest.egg-info/PKG-INFO
2023-11-24T17:24:42,408   writing dependency_links to src/phlorest.egg-info/dependency_links.txt
2023-11-24T17:24:42,410   writing entry points to src/phlorest.egg-info/entry_points.txt
2023-11-24T17:24:42,414   writing requirements to src/phlorest.egg-info/requires.txt
2023-11-24T17:24:42,415   writing top-level names to src/phlorest.egg-info/top_level.txt
2023-11-24T17:24:42,428   reading manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:42,431   reading manifest template 'MANIFEST.in'
2023-11-24T17:24:42,436   warning: no previously-included files matching '*.py[co]' found anywhere in distribution
2023-11-24T17:24:42,437   adding license file 'LICENSE'
2023-11-24T17:24:42,440   writing manifest file 'src/phlorest.egg-info/SOURCES.txt'
2023-11-24T17:24:42,443   /tmp/pip-build-env-_6d3fa_7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'phlorest.phlorest_template' is absent from the `packages` configuration.
2023-11-24T17:24:42,444   !!

2023-11-24T17:24:42,445           ********************************************************************************
2023-11-24T17:24:42,446           ############################
2023-11-24T17:24:42,447           # Package would be ignored #
2023-11-24T17:24:42,447           ############################
2023-11-24T17:24:42,448           Python recognizes 'phlorest.phlorest_template' as an importable package[^1],
2023-11-24T17:24:42,449           but it is absent from setuptools' `packages` configuration.

2023-11-24T17:24:42,450           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T17:24:42,450           package, please make sure that 'phlorest.phlorest_template' is explicitly added
2023-11-24T17:24:42,451           to the `packages` configuration field.

2023-11-24T17:24:42,452           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T17:24:42,453           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T17:24:42,453           instead of `find_packages(...)`/`find:`).

2023-11-24T17:24:42,454           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T17:24:42,456           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T17:24:42,457           If you don't want 'phlorest.phlorest_template' to be distributed and are
2023-11-24T17:24:42,457           already explicitly excluding 'phlorest.phlorest_template' via
2023-11-24T17:24:42,458           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T17:24:42,459           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T17:24:42,460           combination with a more fine grained `package-data` configuration.

2023-11-24T17:24:42,461           You can read more about "package data files" on setuptools documentation page:

2023-11-24T17:24:42,462           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T17:24:42,463           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T17:24:42,464                 even if it does not contain any `.py` files.
2023-11-24T17:24:42,465                 On the other hand, currently there is no concept of package data
2023-11-24T17:24:42,465                 directory, all directories are treated like packages.
2023-11-24T17:24:42,466           ********************************************************************************

2023-11-24T17:24:42,467   !!
2023-11-24T17:24:42,467     check.warn(importable)
2023-11-24T17:24:42,468   /tmp/pip-build-env-_6d3fa_7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'phlorest.phlorest_template.etc' is absent from the `packages` configuration.
2023-11-24T17:24:42,468   !!

2023-11-24T17:24:42,469           ********************************************************************************
2023-11-24T17:24:42,470           ############################
2023-11-24T17:24:42,470           # Package would be ignored #
2023-11-24T17:24:42,471           ############################
2023-11-24T17:24:42,472           Python recognizes 'phlorest.phlorest_template.etc' as an importable package[^1],
2023-11-24T17:24:42,472           but it is absent from setuptools' `packages` configuration.

2023-11-24T17:24:42,473           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T17:24:42,474           package, please make sure that 'phlorest.phlorest_template.etc' is explicitly added
2023-11-24T17:24:42,474           to the `packages` configuration field.

2023-11-24T17:24:42,475           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T17:24:42,476           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T17:24:42,476           instead of `find_packages(...)`/`find:`).

2023-11-24T17:24:42,477           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T17:24:42,479           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T17:24:42,480           If you don't want 'phlorest.phlorest_template.etc' to be distributed and are
2023-11-24T17:24:42,481           already explicitly excluding 'phlorest.phlorest_template.etc' via
2023-11-24T17:24:42,481           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T17:24:42,482           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T17:24:42,483           combination with a more fine grained `package-data` configuration.

2023-11-24T17:24:42,484           You can read more about "package data files" on setuptools documentation page:

2023-11-24T17:24:42,485           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T17:24:42,487           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T17:24:42,488                 even if it does not contain any `.py` files.
2023-11-24T17:24:42,489                 On the other hand, currently there is no concept of package data
2023-11-24T17:24:42,489                 directory, all directories are treated like packages.
2023-11-24T17:24:42,490           ********************************************************************************

2023-11-24T17:24:42,491   !!
2023-11-24T17:24:42,492     check.warn(importable)
2023-11-24T17:24:42,493   copying src/phlorest/check.R -> build/lib/phlorest
2023-11-24T17:24:42,494   creating build/lib/phlorest/phlorest_template
2023-11-24T17:24:42,494   copying src/phlorest/phlorest_template/cldfbench_+id+.py_tmpl -> build/lib/phlorest/phlorest_template
2023-11-24T17:24:42,495   copying src/phlorest/phlorest_template/setup.cfg -> build/lib/phlorest/phlorest_template
2023-11-24T17:24:42,496   copying src/phlorest/phlorest_template/setup.py_tmpl -> build/lib/phlorest/phlorest_template
2023-11-24T17:24:42,496   copying src/phlorest/phlorest_template/test.py -> build/lib/phlorest/phlorest_template
2023-11-24T17:24:42,497   creating build/lib/phlorest/phlorest_template/.github
2023-11-24T17:24:42,497   creating build/lib/phlorest/phlorest_template/.github/workflows
2023-11-24T17:24:42,498   copying src/phlorest/phlorest_template/.github/workflows/cldf-validation.yml -> build/lib/phlorest/phlorest_template/.github/workflows
2023-11-24T17:24:42,498   creating build/lib/phlorest/phlorest_template/etc
2023-11-24T17:24:42,499   copying src/phlorest/phlorest_template/etc/characters.csv -> build/lib/phlorest/phlorest_template/etc
2023-11-24T17:24:42,499   copying src/phlorest/phlorest_template/etc/taxa.csv -> build/lib/phlorest/phlorest_template/etc
2023-11-24T17:24:42,500   installing to build/bdist.linux-armv7l/wheel
2023-11-24T17:24:42,500   running install
2023-11-24T17:24:42,518   running install_lib
2023-11-24T17:24:42,525   creating build/bdist.linux-armv7l
2023-11-24T17:24:42,525   creating build/bdist.linux-armv7l/wheel
2023-11-24T17:24:42,527   creating build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,529   creating build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T17:24:42,531   copying build/lib/phlorest/commands/release.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T17:24:42,533   copying build/lib/phlorest/commands/__init__.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T17:24:42,535   copying build/lib/phlorest/commands/merge_characters.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T17:24:42,537   copying build/lib/phlorest/commands/contrib.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T17:24:42,540   copying build/lib/phlorest/commands/check.py -> build/bdist.linux-armv7l/wheel/phlorest/commands
2023-11-24T17:24:42,542   copying build/lib/phlorest/__main__.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,544   copying build/lib/phlorest/__init__.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,546   copying build/lib/phlorest/metadata.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,549   copying build/lib/phlorest/cldfwriter.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,552   copying build/lib/phlorest/dataset.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,555   copying build/lib/phlorest/check.R -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,557   copying build/lib/phlorest/scaffold.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,559   copying build/lib/phlorest/check.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,562   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T17:24:42,563   copying build/lib/phlorest/phlorest_template/setup.py_tmpl -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T17:24:42,565   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T17:24:42,566   copying build/lib/phlorest/phlorest_template/etc/characters.csv -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T17:24:42,568   copying build/lib/phlorest/phlorest_template/etc/taxa.csv -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/etc
2023-11-24T17:24:42,570   copying build/lib/phlorest/phlorest_template/cldfbench_+id+.py_tmpl -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T17:24:42,572   copying build/lib/phlorest/phlorest_template/test.py -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T17:24:42,575   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github
2023-11-24T17:24:42,577   creating build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github/workflows
2023-11-24T17:24:42,578   copying build/lib/phlorest/phlorest_template/.github/workflows/cldf-validation.yml -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template/.github/workflows
2023-11-24T17:24:42,580   copying build/lib/phlorest/phlorest_template/setup.cfg -> build/bdist.linux-armv7l/wheel/phlorest/phlorest_template
2023-11-24T17:24:42,582   copying build/lib/phlorest/beast.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,584   copying build/lib/phlorest/nexuslib.py -> build/bdist.linux-armv7l/wheel/phlorest
2023-11-24T17:24:42,586   running install_egg_info
2023-11-24T17:24:42,597   Copying src/phlorest.egg-info to build/bdist.linux-armv7l/wheel/phlorest-1.6.0-py3.11.egg-info
2023-11-24T17:24:42,613   running install_scripts
2023-11-24T17:24:42,633   creating build/bdist.linux-armv7l/wheel/phlorest-1.6.0.dist-info/WHEEL
2023-11-24T17:24:42,635   creating '/tmp/pip-wheel-afq9ok74/.tmp-lvwcf4j3/phlorest-1.6.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-24T17:24:42,637   adding 'phlorest/__init__.py'
2023-11-24T17:24:42,639   adding 'phlorest/__main__.py'
2023-11-24T17:24:42,641   adding 'phlorest/beast.py'
2023-11-24T17:24:42,642   adding 'phlorest/check.R'
2023-11-24T17:24:42,644   adding 'phlorest/check.py'
2023-11-24T17:24:42,646   adding 'phlorest/cldfwriter.py'
2023-11-24T17:24:42,648   adding 'phlorest/dataset.py'
2023-11-24T17:24:42,650   adding 'phlorest/metadata.py'
2023-11-24T17:24:42,651   adding 'phlorest/nexuslib.py'
2023-11-24T17:24:42,652   adding 'phlorest/scaffold.py'
2023-11-24T17:24:42,654   adding 'phlorest/commands/__init__.py'
2023-11-24T17:24:42,655   adding 'phlorest/commands/check.py'
2023-11-24T17:24:42,656   adding 'phlorest/commands/contrib.py'
2023-11-24T17:24:42,658   adding 'phlorest/commands/merge_characters.py'
2023-11-24T17:24:42,659   adding 'phlorest/commands/release.py'
2023-11-24T17:24:42,661   adding 'phlorest/phlorest_template/cldfbench_+id+.py_tmpl'
2023-11-24T17:24:42,662   adding 'phlorest/phlorest_template/setup.cfg'
2023-11-24T17:24:42,663   adding 'phlorest/phlorest_template/setup.py_tmpl'
2023-11-24T17:24:42,664   adding 'phlorest/phlorest_template/test.py'
2023-11-24T17:24:42,666   adding 'phlorest/phlorest_template/.github/workflows/cldf-validation.yml'
2023-11-24T17:24:42,668   adding 'phlorest/phlorest_template/etc/characters.csv'
2023-11-24T17:24:42,669   adding 'phlorest/phlorest_template/etc/taxa.csv'
2023-11-24T17:24:42,672   adding 'phlorest-1.6.0.dist-info/LICENSE'
2023-11-24T17:24:42,673   adding 'phlorest-1.6.0.dist-info/METADATA'
2023-11-24T17:24:42,674   adding 'phlorest-1.6.0.dist-info/WHEEL'
2023-11-24T17:24:42,675   adding 'phlorest-1.6.0.dist-info/entry_points.txt'
2023-11-24T17:24:42,676   adding 'phlorest-1.6.0.dist-info/top_level.txt'
2023-11-24T17:24:42,677   adding 'phlorest-1.6.0.dist-info/RECORD'
2023-11-24T17:24:42,679   removing build/bdist.linux-armv7l/wheel
2023-11-24T17:24:42,779   Building wheel for phlorest (pyproject.toml): finished with status 'done'
2023-11-24T17:24:42,785   Created wheel for phlorest: filename=phlorest-1.6.0-py2.py3-none-any.whl size=28321 sha256=7c21c06c0dece1f697118ecbffd3df5d02ef1f2f01aee37ed361b751cb8723c5
2023-11-24T17:24:42,786   Stored in directory: /tmp/pip-ephem-wheel-cache-rsi2nfp0/wheels/c5/56/1d/be4d0e993ea75d115cd8cd23197f94d5550fb34cdc47fb0edd
2023-11-24T17:24:42,798 Successfully built phlorest
2023-11-24T17:24:42,802 Removed build tracker: '/tmp/pip-build-tracker-bulikutl'