2023-11-24T17:32:16,686 Created temporary directory: /tmp/pip-build-tracker-e7lhruai 2023-11-24T17:32:16,687 Initialized build tracking at /tmp/pip-build-tracker-e7lhruai 2023-11-24T17:32:16,687 Created build tracker: /tmp/pip-build-tracker-e7lhruai 2023-11-24T17:32:16,688 Entered build tracker: /tmp/pip-build-tracker-e7lhruai 2023-11-24T17:32:16,688 Created temporary directory: /tmp/pip-wheel-qxawctn9 2023-11-24T17:32:16,692 Created temporary directory: /tmp/pip-ephem-wheel-cache-73kxq6qv 2023-11-24T17:32:16,714 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-24T17:32:16,717 2 location(s) to search for versions of scipion-em-novactf: 2023-11-24T17:32:16,717 * https://pypi.org/simple/scipion-em-novactf/ 2023-11-24T17:32:16,717 * https://www.piwheels.org/simple/scipion-em-novactf/ 2023-11-24T17:32:16,718 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-novactf/ 2023-11-24T17:32:16,719 Getting page https://pypi.org/simple/scipion-em-novactf/ 2023-11-24T17:32:16,720 Found index url https://pypi.org/simple/ 2023-11-24T17:32:16,981 Fetched page https://pypi.org/simple/scipion-em-novactf/ as application/vnd.pypi.simple.v1+json 2023-11-24T17:32:16,986 Found link https://files.pythonhosted.org/packages/bb/e6/b8eb73284cd61bff1c400f18ef944186dcf45a89661a0ed479aa6d7f4d68/scipion-em-novactf-1.0.0.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 1.0.0 2023-11-24T17:32:16,986 Found link https://files.pythonhosted.org/packages/37/e0/a9f58fdc98f3f2ce9c664003e4518c27cc654e80cd116ffb469fd62961a0/scipion-em-novactf-3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.0.0 2023-11-24T17:32:16,987 Found link https://files.pythonhosted.org/packages/c2/0d/675b20f869737e9eca449c1e28ca948299cae488c81f66477c38e70dc5aa/scipion-em-novactf-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.0.1 2023-11-24T17:32:16,988 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/16/b7/37638d144cc0034aa77a1bb4c206f04bb6d6a364fb9ea18178a13c6f26cc/scipion_em_novactf-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,988 Found link https://files.pythonhosted.org/packages/ef/8b/30e2e09f3c05a7860a41eedac43cc22449e75b106cd2fd6f9aa6963557ed/scipion-em-novactf-3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.0.2 2023-11-24T17:32:16,989 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/7b/45/9ae412d9f90272b495973a99d8c90ed8446e82f0c8f4669cf2a92d29155a/scipion_em_novactf-3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,989 Found link https://files.pythonhosted.org/packages/b9/ee/e55546b271a2511bf81c4bbc18ad018cdcfc840c7ea9ccc06f542d267c72/scipion-em-novactf-3.0.3.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.0.3 2023-11-24T17:32:16,990 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/67/8c/61ace2b43686141e47ebaa41e3361c83782e99916d65fd47dd0ae803a90d/scipion_em_novactf-3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,991 Found link https://files.pythonhosted.org/packages/a1/10/83d0f5dc38e2b258f642b505d8f1362bbd9b189bb5d76b743c923630ab05/scipion-em-novactf-3.0.4.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.0.4 2023-11-24T17:32:16,992 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/82/c9/59ea577d150aa7a9ad596718b0d9af2644a70bcadda80c4e525636aba583/scipion_em_novactf-3.0.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,992 Found link https://files.pythonhosted.org/packages/10/bd/80900e405cb5add4147057b48e9586e14ce4267387e230a4c02c12c04828/scipion-em-novactf-3.0.5.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.0.5 2023-11-24T17:32:16,993 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/db/cf/97e973af7179891b26360b4b086ab5d0c83c8268fcfd06ab49f351e219e5/scipion_em_novactf-3.0.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,994 Found link https://files.pythonhosted.org/packages/b8/58/e851fe9f88278cf4eab9592da2c6e45ef8cb273aaca64e99c2cf48451402/scipion-em-novactf-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.1.1 2023-11-24T17:32:16,994 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/87/24/9bf265f8f3db0f51ff6dc178c9602dfe19f048eb903819c80bd4c0bb9288/scipion_em_novactf-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,995 Found link https://files.pythonhosted.org/packages/e6/4c/3bfbc0b1b6412a329c99070a6886b3e30ff2e77b089cbe27323bca5d0069/scipion-em-novactf-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-novactf/), version: 3.1.2 2023-11-24T17:32:16,995 Skipping link: No binaries permitted for scipion-em-novactf: https://files.pythonhosted.org/packages/28/72/5443f1e6ed9dc6d67a1a60eb50c330d0957944eafd8ce0a98efd49f50cb1/scipion_em_novactf-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-novactf/) 2023-11-24T17:32:16,996 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-novactf/ 2023-11-24T17:32:16,997 Getting page https://www.piwheels.org/simple/scipion-em-novactf/ 2023-11-24T17:32:16,998 Found index url https://www.piwheels.org/simple/ 2023-11-24T17:32:17,158 Fetched page https://www.piwheels.org/simple/scipion-em-novactf/ as text/html 2023-11-24T17:32:17,161 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-3.0.5-py3-none-any.whl#sha256=1c179fc32509f86f70336f58ae3e1855252ca900350b7e23101debe62e7fdb43 (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,161 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-3.0.4-py3-none-any.whl#sha256=d33f2cf5ee480227b805b49574ebe34402aecd779d85b933bd893ebd90eb5615 (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,162 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-3.0.3-py3-none-any.whl#sha256=d4e43ed85f0130816e128605c759ec9d80ce925c41f8bb7e33c58444843f5782 (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,163 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-3.0.2-py3-none-any.whl#sha256=72cde7f2c20e33c3aef7e0704ca7d44d6174a17b92a426e65e34f3eb26bea38c (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,163 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-3.0.1-py3-none-any.whl#sha256=e7395936e3c005f68a86b6d8958e59668a3d1b0a554b01e91e653c08321116d8 (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,164 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-3.0.0-py3-none-any.whl#sha256=bfca0facbe93c3886bdfd94fb75a506aad09d12f233381155db73b0fe9b7bc69 (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,164 Skipping link: No binaries permitted for scipion-em-novactf: https://www.piwheels.org/simple/scipion-em-novactf/scipion_em_novactf-1.0.0-py3-none-any.whl#sha256=07b82090397b062887bc5f7aa0308b8d030052a805434028a24a2e0f9c5b3f69 (from https://www.piwheels.org/simple/scipion-em-novactf/) 2023-11-24T17:32:17,165 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-novactf/ 2023-11-24T17:32:17,166 Skipping link: not a file: https://pypi.org/simple/scipion-em-novactf/ 2023-11-24T17:32:17,186 Given no hashes to check 1 links for project 'scipion-em-novactf': discarding no candidates 2023-11-24T17:32:17,206 Collecting scipion-em-novactf==3.1.2 2023-11-24T17:32:17,208 Created temporary directory: /tmp/pip-unpack-lrif_b2x 2023-11-24T17:32:17,344 Downloading scipion-em-novactf-3.1.2.tar.gz (27 kB) 2023-11-24T17:32:17,412 Added scipion-em-novactf==3.1.2 from https://files.pythonhosted.org/packages/e6/4c/3bfbc0b1b6412a329c99070a6886b3e30ff2e77b089cbe27323bca5d0069/scipion-em-novactf-3.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-e7lhruai' 2023-11-24T17:32:17,414 Running setup.py (path:/tmp/pip-wheel-qxawctn9/scipion-em-novactf_f26b9d1f10d94de190431e52f55b8997/setup.py) egg_info for package scipion-em-novactf 2023-11-24T17:32:17,415 Created temporary directory: /tmp/pip-pip-egg-info-96pjtfeo 2023-11-24T17:32:17,415 Preparing metadata (setup.py): started 2023-11-24T17:32:17,416 Running command python setup.py egg_info 2023-11-24T17:32:17,843 Traceback (most recent call last): 2023-11-24T17:32:17,843 File "", line 2, in 2023-11-24T17:32:17,843 File "", line 34, in 2023-11-24T17:32:17,844 File "/tmp/pip-wheel-qxawctn9/scipion-em-novactf_f26b9d1f10d94de190431e52f55b8997/setup.py", line 39, in 2023-11-24T17:32:17,845 from novactf import __version__ 2023-11-24T17:32:17,846 File "/tmp/pip-wheel-qxawctn9/scipion-em-novactf_f26b9d1f10d94de190431e52f55b8997/novactf/__init__.py", line 27, in 2023-11-24T17:32:17,847 import pwem 2023-11-24T17:32:17,847 ModuleNotFoundError: No module named 'pwem' 2023-11-24T17:32:17,913 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-11-24T17:32:17,926 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-11-24T17:32:17,926 exec(compile('"'"''"'"''"'"' 2023-11-24T17:32:17,926 # This is -- a caller that pip uses to run setup.py 2023-11-24T17:32:17,926 # 2023-11-24T17:32:17,926 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-11-24T17:32:17,926 # import from `distutils.core` to work with newer packaging standards. 2023-11-24T17:32:17,926 # - It provides a clear error message when setuptools is not installed. 2023-11-24T17:32:17,926 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-11-24T17:32:17,926 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-11-24T17:32:17,926 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-11-24T17:32:17,926 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-11-24T17:32:17,926 import os, sys, tokenize 2023-11-24T17:32:17,926 2023-11-24T17:32:17,926 try: 2023-11-24T17:32:17,926 import setuptools 2023-11-24T17:32:17,926 except ImportError as error: 2023-11-24T17:32:17,926 print( 2023-11-24T17:32:17,926 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-11-24T17:32:17,926 "the build environment.", 2023-11-24T17:32:17,926 file=sys.stderr, 2023-11-24T17:32:17,926 ) 2023-11-24T17:32:17,926 sys.exit(1) 2023-11-24T17:32:17,926 2023-11-24T17:32:17,926 __file__ = %r 2023-11-24T17:32:17,926 sys.argv[0] = __file__ 2023-11-24T17:32:17,926 2023-11-24T17:32:17,926 if os.path.exists(__file__): 2023-11-24T17:32:17,926 filename = __file__ 2023-11-24T17:32:17,926 with tokenize.open(__file__) as f: 2023-11-24T17:32:17,926 setup_py_code = f.read() 2023-11-24T17:32:17,926 else: 2023-11-24T17:32:17,926 filename = "" 2023-11-24T17:32:17,926 setup_py_code = "from setuptools import setup; setup()" 2023-11-24T17:32:17,926 2023-11-24T17:32:17,926 exec(compile(setup_py_code, filename, "exec")) 2023-11-24T17:32:17,926 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qxawctn9/scipion-em-novactf_f26b9d1f10d94de190431e52f55b8997/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-96pjtfeo[/] 2023-11-24T17:32:17,927 [bold magenta]cwd[/]: /tmp/pip-wheel-qxawctn9/scipion-em-novactf_f26b9d1f10d94de190431e52f55b8997/ 2023-11-24T17:32:17,928 Preparing metadata (setup.py): finished with status 'error' 2023-11-24T17:32:17,929 ERROR: [present-rich] metadata generation failed 2023-11-24T17:32:17,935 Exception information: 2023-11-24T17:32:17,935 Traceback (most recent call last): 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-11-24T17:32:17,935 call_subprocess( 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-11-24T17:32:17,935 raise error 2023-11-24T17:32:17,935 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-11-24T17:32:17,935 2023-11-24T17:32:17,935 The above exception was the direct cause of the following exception: 2023-11-24T17:32:17,935 2023-11-24T17:32:17,935 Traceback (most recent call last): 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-11-24T17:32:17,935 status = run_func(*args) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-11-24T17:32:17,935 return func(self, options, args) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-11-24T17:32:17,935 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-11-24T17:32:17,935 result = self._result = resolver.resolve( 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-11-24T17:32:17,935 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-11-24T17:32:17,935 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-11-24T17:32:17,935 if not criterion.candidates: 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-11-24T17:32:17,935 return bool(self._sequence) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-11-24T17:32:17,935 return any(self) 2023-11-24T17:32:17,935 ^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-11-24T17:32:17,935 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-11-24T17:32:17,935 candidate = func() 2023-11-24T17:32:17,935 ^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-11-24T17:32:17,935 self._link_candidate_cache[link] = LinkCandidate( 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-11-24T17:32:17,935 super().__init__( 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-11-24T17:32:17,935 self.dist = self._prepare() 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-11-24T17:32:17,935 dist = self._prepare_distribution() 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-11-24T17:32:17,935 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-11-24T17:32:17,935 return self._prepare_linked_requirement(req, parallel_builds) 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-11-24T17:32:17,935 dist = _get_prepared_distribution( 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-11-24T17:32:17,935 abstract_dist.prepare_distribution_metadata( 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-11-24T17:32:17,935 self.req.prepare_metadata() 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-11-24T17:32:17,935 self.metadata_directory = generate_metadata_legacy( 2023-11-24T17:32:17,935 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-24T17:32:17,935 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-11-24T17:32:17,935 raise MetadataGenerationFailed(package_details=details) from error 2023-11-24T17:32:17,935 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-11-24T17:32:17,947 Removed scipion-em-novactf==3.1.2 from https://files.pythonhosted.org/packages/e6/4c/3bfbc0b1b6412a329c99070a6886b3e30ff2e77b089cbe27323bca5d0069/scipion-em-novactf-3.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-e7lhruai' 2023-11-24T17:32:17,948 Removed build tracker: '/tmp/pip-build-tracker-e7lhruai'