2023-11-24T18:55:08,542 Created temporary directory: /tmp/pip-build-tracker-6nmkwkon
2023-11-24T18:55:08,544 Initialized build tracking at /tmp/pip-build-tracker-6nmkwkon
2023-11-24T18:55:08,544 Created build tracker: /tmp/pip-build-tracker-6nmkwkon
2023-11-24T18:55:08,544 Entered build tracker: /tmp/pip-build-tracker-6nmkwkon
2023-11-24T18:55:08,545 Created temporary directory: /tmp/pip-wheel-hyhaej41
2023-11-24T18:55:08,549 Created temporary directory: /tmp/pip-ephem-wheel-cache-oc8h2rdq
2023-11-24T18:55:08,572 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T18:55:08,576 2 location(s) to search for versions of moleculekit:
2023-11-24T18:55:08,576 * https://pypi.org/simple/moleculekit/
2023-11-24T18:55:08,576 * https://www.piwheels.org/simple/moleculekit/
2023-11-24T18:55:08,576 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-11-24T18:55:08,577 Getting page https://pypi.org/simple/moleculekit/
2023-11-24T18:55:08,579 Found index url https://pypi.org/simple/
2023-11-24T18:55:08,634 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-11-24T18:55:08,673   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,674   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-11-24T18:55:08,674   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,674   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-11-24T18:55:08,674   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,675   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-11-24T18:55:08,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,675   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-11-24T18:55:08,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,676   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-11-24T18:55:08,676   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,676   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-11-24T18:55:08,676   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,677   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-11-24T18:55:08,677   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,677   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-11-24T18:55:08,677   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,678   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-11-24T18:55:08,678   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,678   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-11-24T18:55:08,678   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,679   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-11-24T18:55:08,679   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,679   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-11-24T18:55:08,679   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,680   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-11-24T18:55:08,680   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,680   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-11-24T18:55:08,680   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,681   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-11-24T18:55:08,681   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,681   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-11-24T18:55:08,681   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,682   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-11-24T18:55:08,682   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,682   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-11-24T18:55:08,682   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,682   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-11-24T18:55:08,683   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,683   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-11-24T18:55:08,683   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,683   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-11-24T18:55:08,684   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,684   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-11-24T18:55:08,684   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,684   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-11-24T18:55:08,685   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,685   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-11-24T18:55:08,685   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,685   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-11-24T18:55:08,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,686   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-11-24T18:55:08,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,686   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-11-24T18:55:08,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,687   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-11-24T18:55:08,687   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,687   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-11-24T18:55:08,687   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,688   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-11-24T18:55:08,688   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,688   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-11-24T18:55:08,688   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,688   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-11-24T18:55:08,689   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-11-24T18:55:08,689   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-11-24T18:55:08,712   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2023-11-24T18:55:08,721   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
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2023-11-24T18:55:08,723   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
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2023-11-24T18:55:08,724   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-11-24T18:55:08,732   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-11-24T18:55:08,733   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-11-24T18:55:08,733   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-11-24T18:55:08,734   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-11-24T18:55:08,734   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-11-24T18:55:08,735   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-11-24T18:55:08,735   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-11-24T18:55:08,736   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-11-24T18:55:08,736   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-11-24T18:55:08,737   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-11-24T18:55:08,737   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-11-24T18:55:08,738   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-11-24T18:55:08,738   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-11-24T18:55:08,739   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-11-24T18:55:08,739   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-11-24T18:55:08,740   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-11-24T18:55:08,741   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-11-24T18:55:08,741   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-11-24T18:55:08,742   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-11-24T18:55:08,742   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2023-11-24T18:55:08,743   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2023-11-24T18:55:08,743 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-11-24T18:55:08,743 Getting page https://www.piwheels.org/simple/moleculekit/
2023-11-24T18:55:08,744 Found index url https://www.piwheels.org/simple/
2023-11-24T18:55:08,813 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2023-11-24T18:55:08,889   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.10-cp311-cp311-linux_armv7l.whl#sha256=c4a1255e698e65143d9b48f8cf7bb53021a073ee3e05028a8222f5ad0b6becf9 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-11-24T18:55:08,918   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-24T18:55:08,918   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,918   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,919   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,919   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,919   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,919   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,919   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,920   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,921   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,922   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,923   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,923   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,923   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,923   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,923   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,924   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,925   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,926   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,927   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,928   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,928   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,928   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,928   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,928   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,929   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,929   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,929   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,929   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-24T18:55:08,941   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-24T18:55:08,942   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,942   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2023-11-24T18:55:08,942   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-24T18:55:08,943   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
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2023-11-24T18:55:08,943 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
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2023-11-24T18:55:08,984 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-11-24T18:55:09,001 Collecting moleculekit==1.8.10
2023-11-24T18:55:09,003   Created temporary directory: /tmp/pip-unpack-7yhtmxh0
2023-11-24T18:55:09,057   Downloading moleculekit-1.8.10.tar.gz (6.2 MB)
2023-11-24T18:55:11,035   Added moleculekit==1.8.10 from https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz to build tracker '/tmp/pip-build-tracker-6nmkwkon'
2023-11-24T18:55:11,043   Created temporary directory: /tmp/pip-build-env-x46v_lj7
2023-11-24T18:55:11,053   Installing build dependencies: started
2023-11-24T18:55:11,054   Running command pip subprocess to install build dependencies
2023-11-24T18:55:12,217   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-11-24T18:55:12,752   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T18:55:14,191   Collecting setuptools
2023-11-24T18:55:14,193     Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl.metadata
2023-11-24T18:55:14,199     Using cached setuptools-69.0.2-py3-none-any.whl.metadata (6.3 kB)
2023-11-24T18:55:15,132   Collecting numpy>=1.18.5
2023-11-24T18:55:15,148     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-11-24T18:55:16,885   Collecting Cython>=0.29.21
2023-11-24T18:55:16,902     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.5-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-11-24T18:55:17,295   Collecting toml
2023-11-24T18:55:17,322     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-11-24T18:55:17,443   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-11-24T18:55:17,463     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-11-24T18:55:17,628   Collecting tomli (from versioneer[toml]==0.28)
2023-11-24T18:55:17,644     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-11-24T18:55:17,906   Using cached setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-11-24T18:55:19,475   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-11-24T18:55:19,512     Creating /tmp/pip-build-env-x46v_lj7/overlay/bin
2023-11-24T18:55:19,514     changing mode of /tmp/pip-build-env-x46v_lj7/overlay/bin/versioneer to 755
2023-11-24T18:55:29,236     changing mode of /tmp/pip-build-env-x46v_lj7/overlay/bin/f2py to 755
2023-11-24T18:55:32,604     changing mode of /tmp/pip-build-env-x46v_lj7/overlay/bin/cygdb to 755
2023-11-24T18:55:32,606     changing mode of /tmp/pip-build-env-x46v_lj7/overlay/bin/cython to 755
2023-11-24T18:55:32,608     changing mode of /tmp/pip-build-env-x46v_lj7/overlay/bin/cythonize to 755
2023-11-24T18:55:32,634   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-11-24T18:55:32,634   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.2 which is incompatible.
2023-11-24T18:55:32,635   Successfully installed Cython-3.0.5 numpy-1.26.2 setuptools-69.0.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-11-24T18:55:33,252   Installing build dependencies: finished with status 'done'
2023-11-24T18:55:33,257   Getting requirements to build wheel: started
2023-11-24T18:55:33,258   Running command Getting requirements to build wheel
2023-11-24T18:56:06,765   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2023-11-24T18:56:12,694   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,695   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,695   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,695   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,695   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,695   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,696   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,696   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,696   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,696   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-11-24T18:56:12,696   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-11-24T18:56:12,696   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-11-24T18:56:12,697   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-11-24T18:56:12,697   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-11-24T18:56:12,697   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-11-24T18:56:12,697   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-11-24T18:56:12,697   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-11-24T18:56:12,697   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-11-24T18:56:12,697   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-11-24T18:56:12,697   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-11-24T18:56:12,698   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-11-24T18:56:12,698   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-11-24T18:56:12,982   running egg_info
2023-11-24T18:56:12,991   writing moleculekit.egg-info/PKG-INFO
2023-11-24T18:56:12,995   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-11-24T18:56:12,997   writing requirements to moleculekit.egg-info/requires.txt
2023-11-24T18:56:12,998   writing top-level names to moleculekit.egg-info/top_level.txt
2023-11-24T18:56:13,028   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,028   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,028   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,028   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,028   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,029   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,030   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,031   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,032   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,033   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,034   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:13,034   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,034   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,034   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,034   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:13,035   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:13,035   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:13,043   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-24T18:56:13,074   reading manifest template 'MANIFEST.in'
2023-11-24T18:56:13,286   no previously-included directories found matching 'moleculekit/test-data'
2023-11-24T18:56:13,287   no previously-included directories found matching 'moleculekit/tests'
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2023-11-24T18:56:13,289   adding license file 'LICENSE'
2023-11-24T18:56:13,306   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-24T18:56:14,478   Getting requirements to build wheel: finished with status 'done'
2023-11-24T18:56:14,493   Installing backend dependencies: started
2023-11-24T18:56:14,494   Running command pip subprocess to install backend dependencies
2023-11-24T18:56:15,738   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-11-24T18:56:16,312   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-24T18:56:16,644   Collecting wheel
2023-11-24T18:56:16,661     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB)
2023-11-24T18:56:18,008   Installing collected packages: wheel
2023-11-24T18:56:18,227     Creating /tmp/pip-build-env-x46v_lj7/normal/bin
2023-11-24T18:56:18,229     changing mode of /tmp/pip-build-env-x46v_lj7/normal/bin/wheel to 755
2023-11-24T18:56:18,242   Successfully installed wheel-0.41.3
2023-11-24T18:56:18,639   Installing backend dependencies: finished with status 'done'
2023-11-24T18:56:18,642   Created temporary directory: /tmp/pip-modern-metadata-v8i3o_ra
2023-11-24T18:56:18,644   Preparing metadata (pyproject.toml): started
2023-11-24T18:56:18,645   Running command Preparing metadata (pyproject.toml)
2023-11-24T18:56:21,043   running dist_info
2023-11-24T18:56:21,044   creating /tmp/pip-modern-metadata-v8i3o_ra/moleculekit.egg-info
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2023-11-24T18:56:21,088   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,088   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,088   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:21,089   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:21,090   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:21,091   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,091   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,091   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,091   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,091   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,092   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,093   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,094   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,095   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-11-24T18:56:21,095   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:21,101   reading manifest file '/tmp/pip-modern-metadata-v8i3o_ra/moleculekit.egg-info/SOURCES.txt'
2023-11-24T18:56:21,103   reading manifest template 'MANIFEST.in'
2023-11-24T18:56:21,330   no previously-included directories found matching 'moleculekit/test-data'
2023-11-24T18:56:21,331   no previously-included directories found matching 'moleculekit/tests'
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2023-11-24T18:56:21,332   adding license file 'LICENSE'
2023-11-24T18:56:21,344   writing manifest file '/tmp/pip-modern-metadata-v8i3o_ra/moleculekit.egg-info/SOURCES.txt'
2023-11-24T18:56:21,353   creating '/tmp/pip-modern-metadata-v8i3o_ra/moleculekit-1.8.10.dist-info'
2023-11-24T18:56:21,550   Preparing metadata (pyproject.toml): finished with status 'done'
2023-11-24T18:56:21,557   Source in /tmp/pip-wheel-hyhaej41/moleculekit_118c0dd7205048499057c44e85409cb2 has version 1.8.10, which satisfies requirement moleculekit==1.8.10 from https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz
2023-11-24T18:56:21,558   Removed moleculekit==1.8.10 from https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz from build tracker '/tmp/pip-build-tracker-6nmkwkon'
2023-11-24T18:56:21,564 Created temporary directory: /tmp/pip-unpack-ph8krkef
2023-11-24T18:56:21,564 Created temporary directory: /tmp/pip-unpack-c565zzw7
2023-11-24T18:56:21,573 Building wheels for collected packages: moleculekit
2023-11-24T18:56:21,577   Created temporary directory: /tmp/pip-wheel-0v2fttto
2023-11-24T18:56:21,578   Destination directory: /tmp/pip-wheel-0v2fttto
2023-11-24T18:56:21,580   Building wheel for moleculekit (pyproject.toml): started
2023-11-24T18:56:21,581   Running command Building wheel for moleculekit (pyproject.toml)
2023-11-24T18:56:23,831   running bdist_wheel
2023-11-24T18:56:23,847   running build
2023-11-24T18:56:23,848   running build_py
2023-11-24T18:56:23,855   creating build
2023-11-24T18:56:23,856   creating build/lib.linux-armv7l-cpython-39
2023-11-24T18:56:23,856   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-24T18:56:23,857   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2023-11-24T18:56:23,891   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
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2023-11-24T18:56:23,900   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-24T18:56:23,904   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,905   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,907   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,909   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,911   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,913   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,915   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,918   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,920   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,922   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,924   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,926   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,928   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,930   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,933   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,935   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-11-24T18:56:23,937   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-24T18:56:23,938   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-24T18:56:23,942   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-24T18:56:23,944   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-11-24T18:56:23,947   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-24T18:56:23,948   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-24T18:56:23,951   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-24T18:56:23,953   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-24T18:56:23,954   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-24T18:56:23,956   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-24T18:56:23,957   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-24T18:56:23,959   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-11-24T18:56:23,962   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-11-24T18:56:23,963   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-11-24T18:56:23,965   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,966   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,968   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,971   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,972   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,975   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,977   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-11-24T18:56:23,981   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,982   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,985   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,987   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,989   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,991   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,994   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,996   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,998   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:23,999   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:24,001   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:24,003   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:24,006   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:24,008   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-11-24T18:56:24,011   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-24T18:56:24,012   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-24T18:56:24,014   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-24T18:56:24,016   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-24T18:56:24,017   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-11-24T18:56:24,019   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-24T18:56:24,020   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-24T18:56:24,023   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-24T18:56:24,026   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-24T18:56:24,027   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-11-24T18:56:24,030   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-11-24T18:56:24,031   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-11-24T18:56:24,032   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-11-24T18:56:24,034   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-24T18:56:24,035   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-24T18:56:24,037   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-24T18:56:24,039   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-24T18:56:24,041   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-11-24T18:56:24,043   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-11-24T18:56:24,044   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-11-24T18:56:24,046   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-11-24T18:56:24,048   running egg_info
2023-11-24T18:56:24,053   writing moleculekit.egg-info/PKG-INFO
2023-11-24T18:56:24,056   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-11-24T18:56:24,058   writing requirements to moleculekit.egg-info/requires.txt
2023-11-24T18:56:24,059   writing top-level names to moleculekit.egg-info/top_level.txt
2023-11-24T18:56:24,076   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,076   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,077   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,078   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,079   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,080   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,081   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,082   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,083   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,083   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,083   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,083   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,083   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,083   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,084   dependency /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-11-24T18:56:24,090   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-24T18:56:24,098   reading manifest template 'MANIFEST.in'
2023-11-24T18:56:24,313   no previously-included directories found matching 'moleculekit/test-data'
2023-11-24T18:56:24,314   no previously-included directories found matching 'moleculekit/tests'
2023-11-24T18:56:24,316   no previously-included directories found matching 'package'
2023-11-24T18:56:24,316   adding license file 'LICENSE'
2023-11-24T18:56:24,334   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-11-24T18:56:24,344   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-11-24T18:56:24,344   !!

2023-11-24T18:56:24,344           ********************************************************************************
2023-11-24T18:56:24,345           ############################
2023-11-24T18:56:24,345           # Package would be ignored #
2023-11-24T18:56:24,345           ############################
2023-11-24T18:56:24,345           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-11-24T18:56:24,345           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,345           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,345           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-11-24T18:56:24,345           to the `packages` configuration field.

2023-11-24T18:56:24,346           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,346           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,346           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,346           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,346           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,347           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-11-24T18:56:24,347           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-11-24T18:56:24,347           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,347           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,347           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,347           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,348           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,348           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,348                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,348                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,348                 directory, all directories are treated like packages.
2023-11-24T18:56:24,348           ********************************************************************************

2023-11-24T18:56:24,349   !!
2023-11-24T18:56:24,349     check.warn(importable)
2023-11-24T18:56:24,349   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-11-24T18:56:24,349   !!

2023-11-24T18:56:24,349           ********************************************************************************
2023-11-24T18:56:24,349           ############################
2023-11-24T18:56:24,349           # Package would be ignored #
2023-11-24T18:56:24,350           ############################
2023-11-24T18:56:24,350           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-11-24T18:56:24,350           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,350           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,350           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-11-24T18:56:24,350           to the `packages` configuration field.

2023-11-24T18:56:24,350           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,351           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,351           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,351           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,351           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,351           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-11-24T18:56:24,351           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-11-24T18:56:24,352           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,352           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,352           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,352           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,352           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,353           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,353                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,353                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,353                 directory, all directories are treated like packages.
2023-11-24T18:56:24,353           ********************************************************************************

2023-11-24T18:56:24,353   !!
2023-11-24T18:56:24,353     check.warn(importable)
2023-11-24T18:56:24,353   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-11-24T18:56:24,354   !!

2023-11-24T18:56:24,354           ********************************************************************************
2023-11-24T18:56:24,354           ############################
2023-11-24T18:56:24,354           # Package would be ignored #
2023-11-24T18:56:24,354           ############################
2023-11-24T18:56:24,354           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-11-24T18:56:24,354           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,355           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,355           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-11-24T18:56:24,355           to the `packages` configuration field.

2023-11-24T18:56:24,355           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,355           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,355           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,355           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,356           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,356           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-11-24T18:56:24,356           already explicitly excluding 'moleculekit.distance_utils' via
2023-11-24T18:56:24,356           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,356           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,356           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,357           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,357           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,357           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,357                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,357                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,357                 directory, all directories are treated like packages.
2023-11-24T18:56:24,358           ********************************************************************************

2023-11-24T18:56:24,358   !!
2023-11-24T18:56:24,358     check.warn(importable)
2023-11-24T18:56:24,358   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-11-24T18:56:24,358   !!

2023-11-24T18:56:24,358           ********************************************************************************
2023-11-24T18:56:24,358           ############################
2023-11-24T18:56:24,359           # Package would be ignored #
2023-11-24T18:56:24,359           ############################
2023-11-24T18:56:24,359           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-11-24T18:56:24,359           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,359           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,359           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-11-24T18:56:24,359           to the `packages` configuration field.

2023-11-24T18:56:24,360           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,360           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,360           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,360           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,360           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,360           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-11-24T18:56:24,361           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-11-24T18:56:24,361           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,361           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,361           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,361           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,361           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,362           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,362                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,362                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,362                 directory, all directories are treated like packages.
2023-11-24T18:56:24,362           ********************************************************************************

2023-11-24T18:56:24,362   !!
2023-11-24T18:56:24,362     check.warn(importable)
2023-11-24T18:56:24,363   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-11-24T18:56:24,363   !!

2023-11-24T18:56:24,363           ********************************************************************************
2023-11-24T18:56:24,363           ############################
2023-11-24T18:56:24,363           # Package would be ignored #
2023-11-24T18:56:24,363           ############################
2023-11-24T18:56:24,363           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-11-24T18:56:24,363           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,364           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,364           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-11-24T18:56:24,364           to the `packages` configuration field.

2023-11-24T18:56:24,364           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,364           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,364           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,365           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,365           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,365           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-11-24T18:56:24,365           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-11-24T18:56:24,365           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,365           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,365           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,366           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,366           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,366           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,366                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,366                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,367                 directory, all directories are treated like packages.
2023-11-24T18:56:24,367           ********************************************************************************

2023-11-24T18:56:24,367   !!
2023-11-24T18:56:24,367     check.warn(importable)
2023-11-24T18:56:24,367   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-11-24T18:56:24,367   !!

2023-11-24T18:56:24,367           ********************************************************************************
2023-11-24T18:56:24,368           ############################
2023-11-24T18:56:24,368           # Package would be ignored #
2023-11-24T18:56:24,368           ############################
2023-11-24T18:56:24,368           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-11-24T18:56:24,368           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,368           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,368           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-11-24T18:56:24,368           to the `packages` configuration field.

2023-11-24T18:56:24,369           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,369           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,369           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,369           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,369           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,370           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-11-24T18:56:24,370           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-11-24T18:56:24,370           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,370           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,370           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,370           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,371           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,371           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,371                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,371                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,371                 directory, all directories are treated like packages.
2023-11-24T18:56:24,371           ********************************************************************************

2023-11-24T18:56:24,372   !!
2023-11-24T18:56:24,372     check.warn(importable)
2023-11-24T18:56:24,372   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-11-24T18:56:24,372   !!

2023-11-24T18:56:24,372           ********************************************************************************
2023-11-24T18:56:24,372           ############################
2023-11-24T18:56:24,372           # Package would be ignored #
2023-11-24T18:56:24,372           ############################
2023-11-24T18:56:24,373           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-11-24T18:56:24,373           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,373           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,373           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-11-24T18:56:24,373           to the `packages` configuration field.

2023-11-24T18:56:24,373           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,373           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,374           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,374           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,374           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,374           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-11-24T18:56:24,374           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-11-24T18:56:24,374           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,375           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,375           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,375           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,375           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,375           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,375                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,376                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,376                 directory, all directories are treated like packages.
2023-11-24T18:56:24,376           ********************************************************************************

2023-11-24T18:56:24,376   !!
2023-11-24T18:56:24,376     check.warn(importable)
2023-11-24T18:56:24,376   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-11-24T18:56:24,376   !!

2023-11-24T18:56:24,377           ********************************************************************************
2023-11-24T18:56:24,377           ############################
2023-11-24T18:56:24,377           # Package would be ignored #
2023-11-24T18:56:24,377           ############################
2023-11-24T18:56:24,377           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-11-24T18:56:24,377           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,377           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,377           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-11-24T18:56:24,377           to the `packages` configuration field.

2023-11-24T18:56:24,378           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,378           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,378           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,378           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,378           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,379           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-11-24T18:56:24,379           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-11-24T18:56:24,379           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,379           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,379           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,379           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,379           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,380           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,380                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,380                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,380                 directory, all directories are treated like packages.
2023-11-24T18:56:24,380           ********************************************************************************

2023-11-24T18:56:24,380   !!
2023-11-24T18:56:24,380     check.warn(importable)
2023-11-24T18:56:24,381   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-11-24T18:56:24,381   !!

2023-11-24T18:56:24,381           ********************************************************************************
2023-11-24T18:56:24,381           ############################
2023-11-24T18:56:24,381           # Package would be ignored #
2023-11-24T18:56:24,381           ############################
2023-11-24T18:56:24,381           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-11-24T18:56:24,381           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,382           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,382           package, please make sure that 'moleculekit.share' is explicitly added
2023-11-24T18:56:24,382           to the `packages` configuration field.

2023-11-24T18:56:24,382           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,382           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,382           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,382           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,383           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,383           If you don't want 'moleculekit.share' to be distributed and are
2023-11-24T18:56:24,383           already explicitly excluding 'moleculekit.share' via
2023-11-24T18:56:24,383           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,383           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,384           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,384           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,384           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,384                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,384                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,384                 directory, all directories are treated like packages.
2023-11-24T18:56:24,385           ********************************************************************************

2023-11-24T18:56:24,385   !!
2023-11-24T18:56:24,385     check.warn(importable)
2023-11-24T18:56:24,385   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-11-24T18:56:24,385   !!

2023-11-24T18:56:24,385           ********************************************************************************
2023-11-24T18:56:24,385           ############################
2023-11-24T18:56:24,386           # Package would be ignored #
2023-11-24T18:56:24,386           ############################
2023-11-24T18:56:24,386           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-11-24T18:56:24,386           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,386           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,386           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-11-24T18:56:24,386           to the `packages` configuration field.

2023-11-24T18:56:24,387           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,387           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,387           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,387           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,387           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,387           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-11-24T18:56:24,388           already explicitly excluding 'moleculekit.share.atomselect' via
2023-11-24T18:56:24,388           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,388           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,388           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,388           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,388           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,389           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,389                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,389                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,389                 directory, all directories are treated like packages.
2023-11-24T18:56:24,389           ********************************************************************************

2023-11-24T18:56:24,389   !!
2023-11-24T18:56:24,390     check.warn(importable)
2023-11-24T18:56:24,390   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-11-24T18:56:24,390   !!

2023-11-24T18:56:24,390           ********************************************************************************
2023-11-24T18:56:24,390           ############################
2023-11-24T18:56:24,390           # Package would be ignored #
2023-11-24T18:56:24,390           ############################
2023-11-24T18:56:24,391           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-11-24T18:56:24,391           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,391           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,391           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-11-24T18:56:24,391           to the `packages` configuration field.

2023-11-24T18:56:24,391           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,392           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,392           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,392           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,392           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,392           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-11-24T18:56:24,393           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-11-24T18:56:24,393           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,393           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,393           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,393           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,393           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,394           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,394                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,394                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,394                 directory, all directories are treated like packages.
2023-11-24T18:56:24,394           ********************************************************************************

2023-11-24T18:56:24,395   !!
2023-11-24T18:56:24,395     check.warn(importable)
2023-11-24T18:56:24,395   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-11-24T18:56:24,395   !!

2023-11-24T18:56:24,395           ********************************************************************************
2023-11-24T18:56:24,395           ############################
2023-11-24T18:56:24,395           # Package would be ignored #
2023-11-24T18:56:24,396           ############################
2023-11-24T18:56:24,396           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-11-24T18:56:24,396           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,396           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,396           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-11-24T18:56:24,396           to the `packages` configuration field.

2023-11-24T18:56:24,397           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,397           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,397           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,397           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,397           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,398           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-11-24T18:56:24,398           already explicitly excluding 'moleculekit.tmalign' via
2023-11-24T18:56:24,398           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,398           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,398           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,398           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,398           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,399           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,399                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,399                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,399                 directory, all directories are treated like packages.
2023-11-24T18:56:24,399           ********************************************************************************

2023-11-24T18:56:24,400   !!
2023-11-24T18:56:24,400     check.warn(importable)
2023-11-24T18:56:24,400   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-11-24T18:56:24,400   !!

2023-11-24T18:56:24,400           ********************************************************************************
2023-11-24T18:56:24,400           ############################
2023-11-24T18:56:24,400           # Package would be ignored #
2023-11-24T18:56:24,401           ############################
2023-11-24T18:56:24,401           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-11-24T18:56:24,401           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,401           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,401           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-11-24T18:56:24,401           to the `packages` configuration field.

2023-11-24T18:56:24,401           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,402           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,402           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,402           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,402           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,402           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-11-24T18:56:24,403           already explicitly excluding 'moleculekit.tmalign.include' via
2023-11-24T18:56:24,403           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,403           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,403           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,403           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,403           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,404                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,404                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,404                 directory, all directories are treated like packages.
2023-11-24T18:56:24,404           ********************************************************************************

2023-11-24T18:56:24,404   !!
2023-11-24T18:56:24,404     check.warn(importable)
2023-11-24T18:56:24,405   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-11-24T18:56:24,405   !!

2023-11-24T18:56:24,405           ********************************************************************************
2023-11-24T18:56:24,405           ############################
2023-11-24T18:56:24,405           # Package would be ignored #
2023-11-24T18:56:24,405           ############################
2023-11-24T18:56:24,405           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-11-24T18:56:24,406           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,406           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,406           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-11-24T18:56:24,406           to the `packages` configuration field.

2023-11-24T18:56:24,406           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,407           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,407           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,407           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,407           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,407           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-11-24T18:56:24,408           already explicitly excluding 'moleculekit.tmalign.src' via
2023-11-24T18:56:24,408           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,408           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,408           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,408           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,408           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,409           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,409                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,409                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,409                 directory, all directories are treated like packages.
2023-11-24T18:56:24,409           ********************************************************************************

2023-11-24T18:56:24,410   !!
2023-11-24T18:56:24,410     check.warn(importable)
2023-11-24T18:56:24,410   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-11-24T18:56:24,410   !!

2023-11-24T18:56:24,410           ********************************************************************************
2023-11-24T18:56:24,410           ############################
2023-11-24T18:56:24,411           # Package would be ignored #
2023-11-24T18:56:24,411           ############################
2023-11-24T18:56:24,411           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-11-24T18:56:24,411           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,411           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,411           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-11-24T18:56:24,412           to the `packages` configuration field.

2023-11-24T18:56:24,412           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,412           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,412           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,412           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,413           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,413           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-11-24T18:56:24,413           already explicitly excluding 'moleculekit.wrapping' via
2023-11-24T18:56:24,413           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,413           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,413           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,414           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,414           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,414           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,414                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,415                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,415                 directory, all directories are treated like packages.
2023-11-24T18:56:24,415           ********************************************************************************

2023-11-24T18:56:24,415   !!
2023-11-24T18:56:24,415     check.warn(importable)
2023-11-24T18:56:24,415   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-11-24T18:56:24,416   !!

2023-11-24T18:56:24,416           ********************************************************************************
2023-11-24T18:56:24,416           ############################
2023-11-24T18:56:24,416           # Package would be ignored #
2023-11-24T18:56:24,416           ############################
2023-11-24T18:56:24,416           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-11-24T18:56:24,416           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,417           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,417           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-11-24T18:56:24,417           to the `packages` configuration field.

2023-11-24T18:56:24,417           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,417           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,417           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,418           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,418           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,418           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-11-24T18:56:24,418           already explicitly excluding 'moleculekit.xtc_utils' via
2023-11-24T18:56:24,419           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,419           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,419           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,419           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,419           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,420           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,420                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,420                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,420                 directory, all directories are treated like packages.
2023-11-24T18:56:24,420           ********************************************************************************

2023-11-24T18:56:24,421   !!
2023-11-24T18:56:24,421     check.warn(importable)
2023-11-24T18:56:24,421   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-11-24T18:56:24,421   !!

2023-11-24T18:56:24,421           ********************************************************************************
2023-11-24T18:56:24,421           ############################
2023-11-24T18:56:24,422           # Package would be ignored #
2023-11-24T18:56:24,422           ############################
2023-11-24T18:56:24,422           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-11-24T18:56:24,422           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,422           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,422           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-11-24T18:56:24,422           to the `packages` configuration field.

2023-11-24T18:56:24,423           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,423           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,423           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,423           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,424           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,424           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-11-24T18:56:24,424           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-11-24T18:56:24,424           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,424           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,424           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,425           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,425           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,425           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,425                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,426                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,426                 directory, all directories are treated like packages.
2023-11-24T18:56:24,426           ********************************************************************************

2023-11-24T18:56:24,426   !!
2023-11-24T18:56:24,426     check.warn(importable)
2023-11-24T18:56:24,426   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-11-24T18:56:24,427   !!

2023-11-24T18:56:24,427           ********************************************************************************
2023-11-24T18:56:24,427           ############################
2023-11-24T18:56:24,427           # Package would be ignored #
2023-11-24T18:56:24,427           ############################
2023-11-24T18:56:24,427           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-11-24T18:56:24,427           but it is absent from setuptools' `packages` configuration.

2023-11-24T18:56:24,428           This leads to an ambiguous overall configuration. If you want to distribute this
2023-11-24T18:56:24,428           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-11-24T18:56:24,428           to the `packages` configuration field.

2023-11-24T18:56:24,428           Alternatively, you can also rely on setuptools' discovery methods
2023-11-24T18:56:24,428           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-11-24T18:56:24,429           instead of `find_packages(...)`/`find:`).

2023-11-24T18:56:24,429           You can read more about "package discovery" on setuptools documentation page:

2023-11-24T18:56:24,429           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-11-24T18:56:24,429           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-11-24T18:56:24,429           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-11-24T18:56:24,429           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-11-24T18:56:24,430           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-11-24T18:56:24,430           combination with a more fine grained `package-data` configuration.

2023-11-24T18:56:24,430           You can read more about "package data files" on setuptools documentation page:

2023-11-24T18:56:24,431           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-11-24T18:56:24,432           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-11-24T18:56:24,432                 even if it does not contain any `.py` files.
2023-11-24T18:56:24,432                 On the other hand, currently there is no concept of package data
2023-11-24T18:56:24,432                 directory, all directories are treated like packages.
2023-11-24T18:56:24,432           ********************************************************************************

2023-11-24T18:56:24,432   !!
2023-11-24T18:56:24,432     check.warn(importable)
2023-11-24T18:56:24,433   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-24T18:56:24,433   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-11-24T18:56:24,433   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-24T18:56:24,433   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-24T18:56:24,434   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-24T18:56:24,437   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-24T18:56:24,437   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-24T18:56:24,458   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-24T18:56:24,460   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-24T18:56:24,461   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-24T18:56:24,492   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-24T18:56:24,495   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-24T18:56:24,495   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-24T18:56:24,514   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-24T18:56:24,516   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-24T18:56:24,516   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-24T18:56:24,519   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-24T18:56:24,521   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-11-24T18:56:24,713   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-11-24T18:56:24,714   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-11-24T18:56:24,716   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-11-24T18:56:24,716   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,717   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,719   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,720   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,722   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,724   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,726   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,728   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,730   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,732   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,734   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,736   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,738   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,739   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,742   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,744   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,746   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,748   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,750   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,751   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,753   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,755   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,757   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,759   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,761   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,763   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,765   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,767   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,769   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,771   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,772   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,774   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,776   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,778   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,780   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,782   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,784   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,786   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,788   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,789   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,791   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,793   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,795   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,797   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,799   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,800   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,802   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,804   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,806   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,808   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,810   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,812   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,814   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,816   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,817   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,819   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,822   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,824   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,825   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,827   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,829   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,831   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,833   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,835   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,837   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,838   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,841   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,843   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,844   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,846   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,848   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,850   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,852   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,854   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,856   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,857   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,859   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,861   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,863   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,865   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,867   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,868   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,870   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,872   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,875   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,877   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,879   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,880   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,882   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,884   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,886   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,888   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,890   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,892   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,894   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,895   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,897   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,899   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,901   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,903   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,905   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,907   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,909   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,911   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,913   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,914   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,916   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,918   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,920   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,922   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,924   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,926   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,928   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,929   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,932   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,933   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,936   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,938   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,939   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,941   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,943   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,945   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,947   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,949   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,951   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,953   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,955   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,956   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,959   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,961   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,963   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,964   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,966   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,968   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,970   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,972   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,974   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,975   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,977   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,979   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,981   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,983   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,985   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,987   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,989   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,991   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,992   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,994   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,996   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:24,998   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,000   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,001   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,003   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,005   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,007   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,009   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,012   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,013   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,015   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,017   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,019   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,021   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,023   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,025   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,027   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,028   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,030   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,032   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,034   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,036   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,038   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,040   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,042   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,044   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,046   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,048   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-11-24T18:56:25,050   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-24T18:56:25,051   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-24T18:56:25,071   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-24T18:56:25,073   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-24T18:56:25,075   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-11-24T18:56:25,076   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-11-24T18:56:25,078   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-11-24T18:56:25,079   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-11-24T18:56:25,084   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-24T18:56:25,085   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-24T18:56:25,108   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-24T18:56:25,111   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-24T18:56:25,111   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-24T18:56:25,131   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-24T18:56:25,133   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-24T18:56:25,135   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-24T18:56:25,136   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-24T18:56:25,138   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-24T18:56:25,140   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-11-24T18:56:25,142   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-24T18:56:25,143   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-24T18:56:25,147   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-24T18:56:25,149   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-24T18:56:25,152   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-24T18:56:25,152   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-24T18:56:25,174   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-24T18:56:25,176   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-24T18:56:25,177   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-24T18:56:25,197   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-24T18:56:25,200   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-24T18:56:25,201   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-24T18:56:25,223   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-24T18:56:25,226   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-24T18:56:25,226   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-24T18:56:25,247   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-24T18:56:25,259   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-11-24T18:56:25,259   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.10'
2023-11-24T18:56:25,259   running build_ext
2023-11-24T18:56:25,270   building 'moleculekit.interactions.hbonds' extension
2023-11-24T18:56:25,271   creating build/temp.linux-armv7l-cpython-39
2023-11-24T18:56:25,271   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-11-24T18:56:25,272   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-11-24T18:56:25,273   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-11-24T18:56:25,274   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-11-24T18:56:25,547   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:56:25,547                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:56:25,547                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:56:25,548                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-11-24T18:56:25,548   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:56:25,548      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:56:25,548         |  ^~~~~~~
2023-11-24T18:56:51,703   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:56:52,029   building 'moleculekit.interactions.pipi' extension
2023-11-24T18:56:52,029   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-11-24T18:56:52,030   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-11-24T18:56:52,358   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:56:52,358                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:56:52,358                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:56:52,359                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-11-24T18:56:52,359   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:56:52,359      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:56:52,359         |  ^~~~~~~
2023-11-24T18:57:20,805   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:57:21,126   building 'moleculekit.interactions.cationpi' extension
2023-11-24T18:57:21,126   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-11-24T18:57:21,127   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-11-24T18:57:21,383   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:57:21,383                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:57:21,383                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:57:21,384                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-11-24T18:57:21,384   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:57:21,384      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:57:21,384         |  ^~~~~~~
2023-11-24T18:57:49,426   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:57:49,747   building 'moleculekit.interactions.sigmahole' extension
2023-11-24T18:57:49,748   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-11-24T18:57:49,748   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-11-24T18:57:50,014   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:57:50,015                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:57:50,015                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:57:50,015                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-11-24T18:57:50,015   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:57:50,015      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:57:50,016         |  ^~~~~~~
2023-11-24T18:58:17,568   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:58:17,890   building 'moleculekit.wrapping' extension
2023-11-24T18:58:17,891   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-11-24T18:58:17,892   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-11-24T18:58:18,122   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:58:18,122                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:58:18,123                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:58:18,123                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-11-24T18:58:18,123   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:58:18,123      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:58:18,123         |  ^~~~~~~
2023-11-24T18:58:44,083   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:58:44,300   building 'moleculekit.bondguesser_utils' extension
2023-11-24T18:58:44,300   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-11-24T18:58:44,301   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-11-24T18:58:44,536   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:58:44,536                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:58:44,536                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:58:44,536                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-11-24T18:58:44,536   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:58:44,537      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:58:44,537         |  ^~~~~~~
2023-11-24T18:58:46,128   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-11-24T18:58:46,129   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-24T18:58:46,129   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-11-24T18:58:46,129         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-11-24T18:58:46,129   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-24T18:58:46,129   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-11-24T18:58:46,129         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-11-24T18:58:46,130   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-11-24T18:58:46,130   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-11-24T18:58:46,130         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-11-24T18:58:46,130   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,130   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-24T18:58:46,130         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,131   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,131   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-24T18:58:46,131         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,131   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,131   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,131         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,131   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,132   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-24T18:58:46,132         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,132   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,132   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-24T18:58:46,132         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,132   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,132   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-24T18:58:46,133         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,133   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,133   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,133         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,133   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,133   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-24T18:58:46,133         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,134   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,134   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,134         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,134   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,134   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-24T18:58:46,134         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,134   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,134   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,135         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,135   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,135   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,135         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,135   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,135   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-24T18:58:46,135         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,136   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,136   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-24T18:58:46,136         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,136   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,136   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,136         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,136   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,137   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-11-24T18:58:46,137         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,137   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,137   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,137         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,137   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,137   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-11-24T18:58:46,138         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,138   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,138   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,138         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,138   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-11-24T18:58:46,138   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-11-24T18:58:46,138         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,157   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-11-24T18:58:46,157   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-24T18:58:46,157   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-11-24T18:58:46,158         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-11-24T18:58:46,158   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-24T18:58:46,158   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-11-24T18:58:46,158         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-11-24T18:59:09,334   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:59:09,645   building 'moleculekit.atomselect_utils' extension
2023-11-24T18:59:09,646   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-11-24T18:59:09,646   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-11-24T18:59:09,880   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:59:09,881                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:59:09,881                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:59:09,881                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-11-24T18:59:09,881   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:59:09,881      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:59:09,881         |  ^~~~~~~
2023-11-24T18:59:11,602   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-11-24T18:59:11,602   moleculekit/atomselect_utils/atomselect_utils.cpp:23209:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-24T18:59:11,602   23209 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-11-24T18:59:11,603         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-11-24T18:59:11,607   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-11-24T18:59:11,608   moleculekit/atomselect_utils/atomselect_utils.cpp:23461:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-24T18:59:11,608   23461 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-11-24T18:59:11,608         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-24T18:59:11,613   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-11-24T18:59:11,613   moleculekit/atomselect_utils/atomselect_utils.cpp:23728:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-11-24T18:59:11,613   23728 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-11-24T18:59:11,613         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-24T18:59:41,594   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-24T18:59:41,927   building 'moleculekit.distance_utils' extension
2023-11-24T18:59:41,928   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-11-24T18:59:41,929   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-11-24T18:59:42,162   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T18:59:42,162                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T18:59:42,163                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T18:59:42,163                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-11-24T18:59:42,163   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T18:59:42,163      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T18:59:42,163         |  ^~~~~~~
2023-11-24T19:00:17,334   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-24T19:00:17,670   building 'moleculekit.occupancy_utils' extension
2023-11-24T19:00:17,671   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-11-24T19:00:17,672   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-11-24T19:00:17,905   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T19:00:17,905                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T19:00:17,906                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T19:00:17,906                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-11-24T19:00:17,906   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T19:00:17,906      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T19:00:17,906         |  ^~~~~~~
2023-11-24T19:00:40,959   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-11-24T19:00:41,171   building 'moleculekit.xtc' extension
2023-11-24T19:00:41,172   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-11-24T19:00:41,173   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-11-24T19:00:41,174   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-11-24T19:00:41,413   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,413      66 |  "OK",
2023-11-24T19:00:41,413         |  ^~~~
2023-11-24T19:00:41,413   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,413      67 |  "Header",
2023-11-24T19:00:41,414         |  ^~~~~~~~
2023-11-24T19:00:41,414   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,414      68 |  "String",
2023-11-24T19:00:41,414         |  ^~~~~~~~
2023-11-24T19:00:41,414   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,414      69 |  "Double",
2023-11-24T19:00:41,414         |  ^~~~~~~~
2023-11-24T19:00:41,415   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,415      70 |  "Integer",
2023-11-24T19:00:41,415         |  ^~~~~~~~~
2023-11-24T19:00:41,415   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,415      71 |  "Float",
2023-11-24T19:00:41,415         |  ^~~~~~~
2023-11-24T19:00:41,415   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,416      72 |  "Unsigned integer",
2023-11-24T19:00:41,416         |  ^~~~~~~~~~~~~~~~~~
2023-11-24T19:00:41,416   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,416      73 |  "Compressed 3D coordinate",
2023-11-24T19:00:41,416         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-11-24T19:00:41,416   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,416      74 |  "Closing file",
2023-11-24T19:00:41,417         |  ^~~~~~~~~~~~~~
2023-11-24T19:00:41,417   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,417      75 |  "Magic number",
2023-11-24T19:00:41,417         |  ^~~~~~~~~~~~~~
2023-11-24T19:00:41,417   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,417      76 |  "Not enough memory",
2023-11-24T19:00:41,417         |  ^~~~~~~~~~~~~~~~~~~
2023-11-24T19:00:41,418   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,418      77 |  "End of file",
2023-11-24T19:00:41,418         |  ^~~~~~~~~~~~~
2023-11-24T19:00:41,418   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-11-24T19:00:41,418      78 |  "File not found"
2023-11-24T19:00:41,418         |  ^~~~~~~~~~~~~~~~
2023-11-24T19:00:41,422   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-11-24T19:00:41,422   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,422     459 |     while (size >= num && num_of_bits < 32)
2023-11-24T19:00:41,423         |            ~~~~~^~~~~~
2023-11-24T19:00:41,423   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-11-24T19:00:41,423   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,423     505 |     while (bytes[num_of_bytes] >= num)
2023-11-24T19:00:41,423         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-11-24T19:00:41,425   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-11-24T19:00:41,426   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,426     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-11-24T19:00:41,426         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-11-24T19:00:41,426   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,426     616 |   for (i = 0; i < num_of_bytes; i++)
2023-11-24T19:00:41,426         |               ~~^~~~~~~~~~~~~~
2023-11-24T19:00:41,426   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,427     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-11-24T19:00:41,427         |               ~~^~~~~~~~~~~~~~~~
2023-11-24T19:00:41,427   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-11-24T19:00:41,427   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,427     664 |   if (lastbits < num_of_bits)
2023-11-24T19:00:41,427         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-11-24T19:00:41,430   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-11-24T19:00:41,431   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,431     785 |  if(size3>xfp->buf1size)
2023-11-24T19:00:41,431         |     ~~~~~^~~~~~~~~~~~~~
2023-11-24T19:00:41,432   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,433     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-24T19:00:41,433         |                   ^
2023-11-24T19:00:41,435   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,435     932 |     if(countmjh >= size3 ) { return -1; }
2023-11-24T19:00:41,435         |        ~~~~~~~~~^~~~~~~~
2023-11-24T19:00:41,436   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,436     935 |     if(countmjh >= size3 ) { return -1; }
2023-11-24T19:00:41,436         |        ~~~~~~~~~^~~~~~~~
2023-11-24T19:00:41,436   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,436     938 |     if(countmjh >= size3 ) { return -1; }
2023-11-24T19:00:41,436         |        ~~~~~~~~~^~~~~~~~
2023-11-24T19:00:41,436   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,437     945 |     if(countmjh >= size3 ) { return -1; }
2023-11-24T19:00:41,437         |        ~~~~~~~~~^~~~~~~~
2023-11-24T19:00:41,437   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,437     948 |     if(countmjh >= size3 ) { return -1; }
2023-11-24T19:00:41,437         |        ~~~~~~~~~^~~~~~~~
2023-11-24T19:00:41,437   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,437     951 |     if(countmjh >= size3 ) { return -1; }
2023-11-24T19:00:41,438         |        ~~~~~~~~~^~~~~~~~
2023-11-24T19:00:41,438   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-11-24T19:00:41,438     756 |  int smallidx,  minidx, maxidx;
2023-11-24T19:00:41,438         |                 ^~~~~~
2023-11-24T19:00:41,438   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-11-24T19:00:41,438     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-11-24T19:00:41,438         |                         ^~~~~~
2023-11-24T19:00:41,438   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-11-24T19:00:41,438     763 |  int errval=1;
2023-11-24T19:00:41,439         |      ^~~~~~
2023-11-24T19:00:41,439   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-11-24T19:00:41,440   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,440    1011 |  if(size3>xfp->buf1size)
2023-11-24T19:00:41,440         |     ~~~~~^~~~~~~~~~~~~~
2023-11-24T19:00:41,441   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,442    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-11-24T19:00:41,442         |                     ~~~~~~~~^~~~~~~
2023-11-24T19:00:41,442   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,442    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-11-24T19:00:41,443         |                    ~~~~~~~~^~~~~~~
2023-11-24T19:00:41,443   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,443    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-11-24T19:00:41,443         |                    ~~~~~~~~^~~~~~~
2023-11-24T19:00:41,444   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,445    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-11-24T19:00:41,445         |                  ^
2023-11-24T19:00:41,445   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,445    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-24T19:00:41,445         |                   ^
2023-11-24T19:00:41,449   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,449    1275 |  if(tmp==(unsigned int)buf2[0])
2023-11-24T19:00:41,449         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-11-24T19:00:41,449   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-11-24T19:00:41,449    1001 |  int errval;
2023-11-24T19:00:41,449         |      ^~~~~~
2023-11-24T19:00:41,452   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-11-24T19:00:41,452   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,452    1316 |  if(size3>xfp->buf1size)
2023-11-24T19:00:41,452         |     ~~~~~^~~~~~~~~~~~~~
2023-11-24T19:00:41,454   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,454    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-24T19:00:41,454         |                   ^
2023-11-24T19:00:41,457   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-11-24T19:00:41,457    1289 |  int smallidx,  maxidx, minidx;
2023-11-24T19:00:41,457         |                         ^~~~~~
2023-11-24T19:00:41,457   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-11-24T19:00:41,457    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-11-24T19:00:41,457         |                         ^~~~~~
2023-11-24T19:00:41,458   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-11-24T19:00:41,458    1297 |  int errval=1;
2023-11-24T19:00:41,458         |      ^~~~~~
2023-11-24T19:00:41,459   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-11-24T19:00:41,459   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,459    1513 |  if(size3>xfp->buf1size) {
2023-11-24T19:00:41,459         |     ~~~~~^~~~~~~~~~~~~~
2023-11-24T19:00:41,463   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,464    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-11-24T19:00:41,464         |                  ^
2023-11-24T19:00:41,464   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-11-24T19:00:41,464    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-11-24T19:00:41,464         |                   ^
2023-11-24T19:00:41,468   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-11-24T19:00:41,468    1743 |  if(tmp==(unsigned int)buf2[0])
2023-11-24T19:00:41,468         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-11-24T19:00:41,468   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-11-24T19:00:41,468    1504 |  int errval=1;
2023-11-24T19:00:41,468         |      ^~~~~~
2023-11-24T19:00:43,717   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-11-24T19:00:43,972   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-11-24T19:00:44,547   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-11-24T19:00:44,547   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-11-24T19:00:44,547     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-11-24T19:00:44,547         |      ^~~
2023-11-24T19:00:44,554   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-11-24T19:00:44,554   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-11-24T19:00:44,554     418 |  int nf3 = nframes * 3;
2023-11-24T19:00:44,554         |      ^~~
2023-11-24T19:00:44,558   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-11-24T19:00:44,559   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-11-24T19:00:44,559     491 |  int reading_index = 0;
2023-11-24T19:00:44,559         |      ^~~~~~~~~~~~~
2023-11-24T19:00:44,559   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-11-24T19:00:44,559     492 |  int writing_index = 0;
2023-11-24T19:00:44,559         |      ^~~~~~~~~~~~~
2023-11-24T19:00:45,318   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-11-24T19:00:45,556   In file included from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-11-24T19:00:45,556                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-11-24T19:00:45,556                    from /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-11-24T19:00:45,557                    from moleculekit/xtc_utils/xtc.cpp:1234:
2023-11-24T19:00:45,557   /tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-11-24T19:00:45,557      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-11-24T19:00:45,557         |  ^~~~~~~
2023-11-24T19:01:10,605   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-11-24T19:01:11,656   building 'moleculekit.tmalign' extension
2023-11-24T19:01:11,657   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-11-24T19:01:11,658   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-11-24T19:01:11,660   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-11-24T19:01:41,151   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-x46v_lj7/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-11-24T19:01:59,586   In file included from /usr/include/c++/10/vector:72,
2023-11-24T19:01:59,587                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-11-24T19:01:59,587   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-11-24T19:01:59,587   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-11-24T19:01:59,587     426 |       vector<_Tp, _Alloc>::
2023-11-24T19:01:59,587         |       ^~~~~~~~~~~~~~~~~~~
2023-11-24T19:02:00,163   In file included from /usr/include/c++/10/vector:67,
2023-11-24T19:02:00,164                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-11-24T19:02:00,164   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-11-24T19:02:00,164   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-24T19:02:00,164    1198 |    _M_realloc_insert(end(), __x);
2023-11-24T19:02:00,164         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-24T19:02:00,165   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-24T19:02:00,165    1198 |    _M_realloc_insert(end(), __x);
2023-11-24T19:02:00,165         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-24T19:02:00,167   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-11-24T19:02:00,167    1198 |    _M_realloc_insert(end(), __x);
2023-11-24T19:02:00,167         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-11-24T19:02:02,621   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-11-24T19:02:03,082   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-11-24T19:02:03,082   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.10'
2023-11-24T19:02:03,082   installing to build/bdist.linux-armv7l/wheel
2023-11-24T19:02:03,083   running install
2023-11-24T19:02:03,108   running install_lib
2023-11-24T19:02:03,115   creating build/bdist.linux-armv7l
2023-11-24T19:02:03,115   creating build/bdist.linux-armv7l/wheel
2023-11-24T19:02:03,117   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,124   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-24T19:02:03,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-24T19:02:03,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-11-24T19:02:03,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,169   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-24T19:02:03,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-24T19:02:03,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-11-24T19:02:03,194   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-24T19:02:03,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-24T19:02:03,398   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-11-24T19:02:03,402   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,434   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,449   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,508   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,538   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,540   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,675   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-11-24T19:02:03,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-24T19:02:03,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-11-24T19:02:03,709   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-11-24T19:02:03,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-11-24T19:02:03,712   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,734   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-11-24T19:02:03,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,752   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-24T19:02:03,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-24T19:02:03,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-24T19:02:03,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-11-24T19:02:03,762   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-24T19:02:03,763   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-24T19:02:03,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-24T19:02:03,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-11-24T19:02:03,795   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-24T19:02:03,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-24T19:02:03,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-24T19:02:03,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-11-24T19:02:03,802   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-24T19:02:03,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-24T19:02:03,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-24T19:02:03,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-11-24T19:02:03,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:03,840   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:03,841   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-24T19:02:03,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-24T19:02:03,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-11-24T19:02:03,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:03,875   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-24T19:02:03,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-24T19:02:03,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-11-24T19:02:03,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:03,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:03,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:03,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:03,967   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-24T19:02:03,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-24T19:02:03,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-11-24T19:02:03,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-11-24T19:02:04,015   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-24T19:02:04,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-24T19:02:04,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-11-24T19:02:04,040   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-24T19:02:04,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-24T19:02:04,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-11-24T19:02:04,071   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-24T19:02:04,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-24T19:02:04,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-24T19:02:04,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-24T19:02:04,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-11-24T19:02:04,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,089   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-11-24T19:02:04,091   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-24T19:02:04,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-24T19:02:04,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-24T19:02:04,096   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-24T19:02:04,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-11-24T19:02:04,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-11-24T19:02:04,101   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-24T19:02:04,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-24T19:02:04,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-24T19:02:04,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-24T19:02:04,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-11-24T19:02:04,111   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-24T19:02:04,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-24T19:02:04,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-11-24T19:02:04,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,120   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,134   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-24T19:02:04,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-24T19:02:04,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-24T19:02:04,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-24T19:02:04,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-11-24T19:02:04,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-11-24T19:02:04,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,153   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-24T19:02:04,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-24T19:02:04,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-11-24T19:02:04,184   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,187   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,207   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-24T19:02:04,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-24T19:02:04,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-11-24T19:02:04,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-11-24T19:02:04,230   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-24T19:02:04,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-24T19:02:04,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-24T19:02:04,252   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-11-24T19:02:04,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-11-24T19:02:04,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-11-24T19:02:04,257   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-11-24T19:02:04,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-11-24T19:02:04,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,286   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-24T19:02:04,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-24T19:02:04,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-11-24T19:02:04,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-11-24T19:02:04,462   running install_egg_info
2023-11-24T19:02:04,468   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.10-py3.9.egg-info
2023-11-24T19:02:04,481   running install_scripts
2023-11-24T19:02:04,528   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.10.dist-info/WHEEL
2023-11-24T19:02:04,531   creating '/tmp/pip-wheel-0v2fttto/.tmp-1reukvhg/moleculekit-1.8.10-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-24T19:02:04,533   adding 'moleculekit/__init__.py'
2023-11-24T19:02:04,535   adding 'moleculekit/_version.py'
2023-11-24T19:02:04,537   adding 'moleculekit/align.py'
2023-11-24T19:02:04,881   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:04,893   adding 'moleculekit/bondguesser.py'
2023-11-24T19:02:05,140   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:05,148   adding 'moleculekit/config.py'
2023-11-24T19:02:05,150   adding 'moleculekit/dihedral.py'
2023-11-24T19:02:05,151   adding 'moleculekit/distance.py'
2023-11-24T19:02:05,473   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:05,485   adding 'moleculekit/home.py'
2023-11-24T19:02:05,486   adding 'moleculekit/logging.ini'
2023-11-24T19:02:05,500   adding 'moleculekit/molecule.py'
2023-11-24T19:02:05,727   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:05,736   adding 'moleculekit/opm.py'
2023-11-24T19:02:05,738   adding 'moleculekit/periodictable.py'
2023-11-24T19:02:05,739   adding 'moleculekit/pymolgraphics.py'
2023-11-24T19:02:05,741   adding 'moleculekit/rcsb.py'
2023-11-24T19:02:05,742   adding 'moleculekit/rdkitintegration.py'
2023-11-24T19:02:05,754   adding 'moleculekit/readers.py'
2023-11-24T19:02:06,364   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:06,388   adding 'moleculekit/util.py'
2023-11-24T19:02:06,390   adding 'moleculekit/version.py'
2023-11-24T19:02:06,391   adding 'moleculekit/viewer.py'
2023-11-24T19:02:06,393   adding 'moleculekit/vmd_wrapper'
2023-11-24T19:02:06,394   adding 'moleculekit/vmdgraphics.py'
2023-11-24T19:02:06,397   adding 'moleculekit/vmdviewer.py'
2023-11-24T19:02:06,650   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:06,664   adding 'moleculekit/writers.py'
2023-11-24T19:02:06,932   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:06,942   adding 'moleculekit/atomselect/__init__.py'
2023-11-24T19:02:06,943   adding 'moleculekit/atomselect/analyze.py'
2023-11-24T19:02:06,945   adding 'moleculekit/atomselect/atomselect.py'
2023-11-24T19:02:06,947   adding 'moleculekit/atomselect/languageparser.py'
2023-11-24T19:02:07,051   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-11-24T19:02:07,062   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-11-24T19:02:07,154   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-11-24T19:02:07,163   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-11-24T19:02:07,264   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-11-24T19:02:07,275   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-11-24T19:02:07,277   adding 'moleculekit/interactions/__init__.py'
2023-11-24T19:02:07,566   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:07,837   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:07,849   adding 'moleculekit/interactions/interactions.py'
2023-11-24T19:02:08,131   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:08,421   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-11-24T19:02:08,522   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-11-24T19:02:08,531   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-11-24T19:02:08,623   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-11-24T19:02:08,632   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-11-24T19:02:08,727   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-11-24T19:02:08,736   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-11-24T19:02:08,831   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-11-24T19:02:08,839   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-11-24T19:02:08,927   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-11-24T19:02:08,936   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-11-24T19:02:08,937   adding 'moleculekit/pdbx/__init__.py'
2023-11-24T19:02:08,941   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-11-24T19:02:08,944   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-11-24T19:02:08,946   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-11-24T19:02:08,947   adding 'moleculekit/pdbx/reader/__init__.py'
2023-11-24T19:02:08,949   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-11-24T19:02:08,951   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-11-24T19:02:08,952   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-11-24T19:02:08,953   adding 'moleculekit/pdbx/tests/__init__.py'
2023-11-24T19:02:08,955   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-11-24T19:02:08,956   adding 'moleculekit/pdbx/writer/__init__.py'
2023-11-24T19:02:08,958   adding 'moleculekit/ply/__init__.py'
2023-11-24T19:02:08,962   adding 'moleculekit/ply/lex.py'
2023-11-24T19:02:08,974   adding 'moleculekit/ply/yacc.py'
2023-11-24T19:02:08,976   adding 'moleculekit/projections/__init__.py'
2023-11-24T19:02:08,978   adding 'moleculekit/projections/metriccoordinate.py'
2023-11-24T19:02:08,982   adding 'moleculekit/projections/metricdihedral.py'
2023-11-24T19:02:08,986   adding 'moleculekit/projections/metricdistance.py'
2023-11-24T19:02:08,988   adding 'moleculekit/projections/metricfluctuation.py'
2023-11-24T19:02:08,989   adding 'moleculekit/projections/metricgyration.py'
2023-11-24T19:02:08,993   adding 'moleculekit/projections/metricplumed2.py'
2023-11-24T19:02:08,995   adding 'moleculekit/projections/metricrmsd.py'
2023-11-24T19:02:08,997   adding 'moleculekit/projections/metricsasa.py'
2023-11-24T19:02:08,999   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-11-24T19:02:09,001   adding 'moleculekit/projections/metricshell.py'
2023-11-24T19:02:09,003   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-11-24T19:02:09,004   adding 'moleculekit/projections/metrictmscore.py'
2023-11-24T19:02:09,006   adding 'moleculekit/projections/projection.py'
2023-11-24T19:02:09,007   adding 'moleculekit/projections/util.py'
2023-11-24T19:02:09,009   adding 'moleculekit/share/ALA.cif'
2023-11-24T19:02:09,011   adding 'moleculekit/share/backbone.cif'
2023-11-24T19:02:10,318   adding 'moleculekit/share/opm_sequences.json'
2023-11-24T19:02:10,403   adding 'moleculekit/share/atomselect/atomselect.json'
2023-11-24T19:02:10,408   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-11-24T19:02:10,409   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-11-24T19:02:10,410   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-11-24T19:02:10,411   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-11-24T19:02:10,413   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-11-24T19:02:10,414   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-11-24T19:02:10,415   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-11-24T19:02:10,416   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-11-24T19:02:10,418   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-11-24T19:02:10,419   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-11-24T19:02:10,420   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-11-24T19:02:10,421   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-11-24T19:02:10,423   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-11-24T19:02:10,424   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-11-24T19:02:10,425   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-11-24T19:02:10,426   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-11-24T19:02:10,427   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-11-24T19:02:10,428   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-11-24T19:02:10,430   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-11-24T19:02:10,431   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-11-24T19:02:10,432   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-11-24T19:02:10,433   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-11-24T19:02:10,435   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-11-24T19:02:10,436   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-11-24T19:02:10,437   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-11-24T19:02:10,438   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-11-24T19:02:10,440   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-11-24T19:02:10,441   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-11-24T19:02:10,442   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-11-24T19:02:10,443   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-11-24T19:02:10,444   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-11-24T19:02:10,446   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-11-24T19:02:10,447   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-11-24T19:02:10,448   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-11-24T19:02:10,449   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-11-24T19:02:10,451   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-11-24T19:02:10,452   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-11-24T19:02:10,453   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-11-24T19:02:10,454   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-11-24T19:02:10,456   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-11-24T19:02:10,457   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-11-24T19:02:10,458   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-11-24T19:02:10,459   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-11-24T19:02:10,461   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-11-24T19:02:10,462   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-11-24T19:02:10,463   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-11-24T19:02:10,464   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-11-24T19:02:10,466   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-11-24T19:02:10,467   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-11-24T19:02:10,468   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-11-24T19:02:10,469   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-11-24T19:02:10,470   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-11-24T19:02:10,472   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-11-24T19:02:10,473   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-11-24T19:02:10,474   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-11-24T19:02:10,475   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-11-24T19:02:10,476   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-11-24T19:02:10,477   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-11-24T19:02:10,479   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-11-24T19:02:10,480   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-11-24T19:02:10,481   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-11-24T19:02:10,482   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-11-24T19:02:10,483   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-11-24T19:02:10,484   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-11-24T19:02:10,486   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-11-24T19:02:10,487   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-11-24T19:02:10,488   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-11-24T19:02:10,489   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-11-24T19:02:10,490   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-11-24T19:02:10,494   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-11-24T19:02:10,495   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-11-24T19:02:10,496   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-11-24T19:02:10,497   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-11-24T19:02:10,499   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-11-24T19:02:10,500   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-11-24T19:02:10,501   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-11-24T19:02:10,502   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-11-24T19:02:10,503   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-11-24T19:02:10,504   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-11-24T19:02:10,506   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-11-24T19:02:10,507   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-11-24T19:02:10,508   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-11-24T19:02:10,509   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-11-24T19:02:10,511   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-11-24T19:02:10,512   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-11-24T19:02:10,513   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-11-24T19:02:10,514   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-11-24T19:02:10,515   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-11-24T19:02:10,517   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-11-24T19:02:10,518   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-11-24T19:02:10,519   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-11-24T19:02:10,520   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-11-24T19:02:10,521   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-11-24T19:02:10,523   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-11-24T19:02:10,524   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-11-24T19:02:10,525   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-11-24T19:02:10,526   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-11-24T19:02:10,527   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-11-24T19:02:10,529   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-11-24T19:02:10,530   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-11-24T19:02:10,531   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-11-24T19:02:10,532   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-11-24T19:02:10,533   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-11-24T19:02:10,535   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-11-24T19:02:10,536   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-11-24T19:02:10,537   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-11-24T19:02:10,538   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-11-24T19:02:10,539   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-11-24T19:02:10,540   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-11-24T19:02:10,542   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-11-24T19:02:10,543   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-11-24T19:02:10,544   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-11-24T19:02:10,545   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-11-24T19:02:10,546   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-11-24T19:02:10,548   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-11-24T19:02:10,549   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-11-24T19:02:10,550   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-11-24T19:02:10,551   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-11-24T19:02:10,553   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-11-24T19:02:10,554   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-11-24T19:02:10,555   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-11-24T19:02:10,556   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-11-24T19:02:10,557   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-11-24T19:02:10,558   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-11-24T19:02:10,562   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-11-24T19:02:10,563   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-11-24T19:02:10,564   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-11-24T19:02:10,565   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-11-24T19:02:10,567   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-11-24T19:02:10,568   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-11-24T19:02:10,569   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-11-24T19:02:10,570   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-11-24T19:02:10,571   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-11-24T19:02:10,573   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-11-24T19:02:10,574   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-11-24T19:02:10,575   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-11-24T19:02:10,576   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-11-24T19:02:10,577   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-11-24T19:02:10,579   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-11-24T19:02:10,580   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-11-24T19:02:10,581   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-11-24T19:02:10,582   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-11-24T19:02:10,583   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-11-24T19:02:10,585   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-11-24T19:02:10,586   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-11-24T19:02:10,587   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-11-24T19:02:10,588   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-11-24T19:02:10,589   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-11-24T19:02:10,591   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-11-24T19:02:10,592   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-11-24T19:02:10,593   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-11-24T19:02:10,594   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-11-24T19:02:10,596   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-11-24T19:02:10,597   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-11-24T19:02:10,598   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-11-24T19:02:10,599   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-11-24T19:02:10,601   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-11-24T19:02:10,602   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-11-24T19:02:10,603   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-11-24T19:02:10,604   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-11-24T19:02:10,606   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-11-24T19:02:10,607   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-11-24T19:02:10,608   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-11-24T19:02:10,609   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-11-24T19:02:10,610   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-11-24T19:02:10,612   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-11-24T19:02:10,613   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-11-24T19:02:10,614   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-11-24T19:02:10,615   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-11-24T19:02:10,617   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-11-24T19:02:10,618   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-11-24T19:02:10,619   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-11-24T19:02:10,620   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-11-24T19:02:10,621   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-11-24T19:02:10,623   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-11-24T19:02:10,624   adding 'moleculekit/smallmol/__init__.py'
2023-11-24T19:02:10,630   adding 'moleculekit/smallmol/smallmol.py'
2023-11-24T19:02:10,632   adding 'moleculekit/smallmol/smallmollib.py'
2023-11-24T19:02:10,634   adding 'moleculekit/smallmol/test_smallmol.py'
2023-11-24T19:02:10,636   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-11-24T19:02:10,638   adding 'moleculekit/smallmol/util.py'
2023-11-24T19:02:10,639   adding 'moleculekit/smallmol/tools/__init__.py'
2023-11-24T19:02:10,641   adding 'moleculekit/smallmol/tools/clustering.py'
2023-11-24T19:02:10,643   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-11-24T19:02:10,644   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-11-24T19:02:10,734   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-11-24T19:02:10,744   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-11-24T19:02:10,745   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-11-24T19:02:10,748   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-11-24T19:02:10,767   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-11-24T19:02:10,770   adding 'moleculekit/tools/__init__.py'
2023-11-24T19:02:10,772   adding 'moleculekit/tools/atomtyper.py'
2023-11-24T19:02:10,774   adding 'moleculekit/tools/autosegment.py'
2023-11-24T19:02:10,776   adding 'moleculekit/tools/crystalpacking.py'
2023-11-24T19:02:10,780   adding 'moleculekit/tools/detect.py'
2023-11-24T19:02:10,782   adding 'moleculekit/tools/docking.py'
2023-11-24T19:02:10,784   adding 'moleculekit/tools/graphalignment.py'
2023-11-24T19:02:10,785   adding 'moleculekit/tools/hhblitsprofile.py'
2023-11-24T19:02:10,787   adding 'moleculekit/tools/moleculechecks.py'
2023-11-24T19:02:10,793   adding 'moleculekit/tools/preparation.py'
2023-11-24T19:02:10,796   adding 'moleculekit/tools/preparation_customres.py'
2023-11-24T19:02:10,798   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-11-24T19:02:10,801   adding 'moleculekit/tools/voxeldescriptors.py'
2023-11-24T19:02:10,803   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-11-24T19:02:10,804   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-11-24T19:02:10,896   adding 'moleculekit/wrapping/wrapping.cpp'
2023-11-24T19:02:10,905   adding 'moleculekit/wrapping/wrapping.pyx'
2023-11-24T19:02:10,995   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-11-24T19:02:11,004   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-11-24T19:02:11,005   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-11-24T19:02:11,008   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-11-24T19:02:11,009   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-11-24T19:02:11,011   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-11-24T19:02:11,018   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-11-24T19:02:11,020   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-11-24T19:02:11,022   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-11-24T19:02:11,024   adding 'moleculekit-1.8.10.dist-info/LICENSE'
2023-11-24T19:02:11,025   adding 'moleculekit-1.8.10.dist-info/METADATA'
2023-11-24T19:02:11,026   adding 'moleculekit-1.8.10.dist-info/WHEEL'
2023-11-24T19:02:11,027   adding 'moleculekit-1.8.10.dist-info/top_level.txt'
2023-11-24T19:02:11,032   adding 'moleculekit-1.8.10.dist-info/RECORD'
2023-11-24T19:02:11,180   removing build/bdist.linux-armv7l/wheel
2023-11-24T19:02:11,441   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-11-24T19:02:11,714   Created wheel for moleculekit: filename=moleculekit-1.8.10-cp39-cp39-linux_armv7l.whl size=12629511 sha256=74d6ae4010633a5b07d88a70f52439031f362b1cc806864a1c17b6a3ed2bcd09
2023-11-24T19:02:11,715   Stored in directory: /tmp/pip-ephem-wheel-cache-oc8h2rdq/wheels/6a/86/8e/3e08a5a912938e149ef876fe8950306c4288d1fdb08006fff0
2023-11-24T19:02:11,740 Successfully built moleculekit
2023-11-24T19:02:12,052 Removed build tracker: '/tmp/pip-build-tracker-6nmkwkon'