2023-11-24T22:58:18,130 Created temporary directory: /tmp/pip-build-tracker-ojnbvjbp 2023-11-24T22:58:18,131 Initialized build tracking at /tmp/pip-build-tracker-ojnbvjbp 2023-11-24T22:58:18,131 Created build tracker: /tmp/pip-build-tracker-ojnbvjbp 2023-11-24T22:58:18,132 Entered build tracker: /tmp/pip-build-tracker-ojnbvjbp 2023-11-24T22:58:18,133 Created temporary directory: /tmp/pip-wheel-yee2054t 2023-11-24T22:58:18,136 Created temporary directory: /tmp/pip-ephem-wheel-cache-vq9w6wg9 2023-11-24T22:58:18,158 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-24T22:58:18,161 2 location(s) to search for versions of pdanalysis: 2023-11-24T22:58:18,161 * https://pypi.org/simple/pdanalysis/ 2023-11-24T22:58:18,161 * https://www.piwheels.org/simple/pdanalysis/ 2023-11-24T22:58:18,162 Fetching project page and analyzing links: https://pypi.org/simple/pdanalysis/ 2023-11-24T22:58:18,162 Getting page https://pypi.org/simple/pdanalysis/ 2023-11-24T22:58:18,164 Found index url https://pypi.org/simple/ 2023-11-24T22:58:18,425 Fetched page https://pypi.org/simple/pdanalysis/ as application/vnd.pypi.simple.v1+json 2023-11-24T22:58:18,427 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/31/19/07c0ae5aa4e6e55a308fa728b61c5d6cd39d7c1b09b0fe2b84e016fc67e9/PDAnalysis-0.0.0-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-24T22:58:18,428 Found link https://files.pythonhosted.org/packages/a7/e3/5cb3982fc474be70e40b200f318f89c88654ed728333c24a96859be3bab0/PDAnalysis-0.0.0.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.0 2023-11-24T22:58:18,429 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/8d/07/71de75b86360b7c9d543b83fcf393edc1edde2b45e946f40daa8dd3108e9/PDAnalysis-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-24T22:58:18,429 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/73/23/029435f87d9ba508d9399c68e8cf6386aca6a51ee1514474380ef54f3b1b/PDAnalysis-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-24T22:58:18,430 Found link https://files.pythonhosted.org/packages/63/29/8aefced1738d564616c271fcc970980d30060381271dde222a5e9beaed98/PDAnalysis-0.0.2.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.2 2023-11-24T22:58:18,431 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/13/22/236f015727611aa024b983b55177c5eb07bc3d8af4fd587e649025ea98a4/PDAnalysis-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-24T22:58:18,432 Found link https://files.pythonhosted.org/packages/4c/f1/36c98c3e3279c0f9e620bcb37ba0d8057a1c807ad419eb1492ba2d042bb9/PDAnalysis-0.0.3.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.3 2023-11-24T22:58:18,433 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/f7/a0/3ffe19799e3f7632f7807e65d975d88fd201173a1931cf243f84c7fbccdc/PDAnalysis-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-24T22:58:18,434 Found link https://files.pythonhosted.org/packages/80/eb/b0c8b9b6372a66b2389cc76840e8fab7625b2f53b06eb0b9eada5545ed83/PDAnalysis-0.0.4.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.4 2023-11-24T22:58:18,434 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdanalysis/ 2023-11-24T22:58:18,435 Getting page https://www.piwheels.org/simple/pdanalysis/ 2023-11-24T22:58:18,436 Found index url https://www.piwheels.org/simple/ 2023-11-24T22:58:18,598 Fetched page https://www.piwheels.org/simple/pdanalysis/ as text/html 2023-11-24T22:58:18,599 Skipping link: not a file: https://www.piwheels.org/simple/pdanalysis/ 2023-11-24T22:58:18,600 Skipping link: not a file: https://pypi.org/simple/pdanalysis/ 2023-11-24T22:58:18,619 Given no hashes to check 1 links for project 'pdanalysis': discarding no candidates 2023-11-24T22:58:18,637 Collecting pdanalysis==0.0.0 2023-11-24T22:58:18,639 Created temporary directory: /tmp/pip-unpack-i6ayahfw 2023-11-24T22:58:18,857 Downloading PDAnalysis-0.0.0.tar.gz (16 kB) 2023-11-24T22:58:18,901 Added pdanalysis==0.0.0 from https://files.pythonhosted.org/packages/a7/e3/5cb3982fc474be70e40b200f318f89c88654ed728333c24a96859be3bab0/PDAnalysis-0.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-ojnbvjbp' 2023-11-24T22:58:18,902 Running setup.py (path:/tmp/pip-wheel-yee2054t/pdanalysis_dcd600cb65194c8bb5d5d30698fe05e4/setup.py) egg_info for package pdanalysis 2023-11-24T22:58:18,903 Created temporary directory: /tmp/pip-pip-egg-info-nwf8amzo 2023-11-24T22:58:18,904 Preparing metadata (setup.py): started 2023-11-24T22:58:18,905 Running command python setup.py egg_info 2023-11-24T22:58:19,902 running egg_info 2023-11-24T22:58:19,904 creating /tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info 2023-11-24T22:58:19,928 writing /tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/PKG-INFO 2023-11-24T22:58:19,932 writing dependency_links to /tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/dependency_links.txt 2023-11-24T22:58:19,934 writing entry points to /tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/entry_points.txt 2023-11-24T22:58:19,936 writing requirements to /tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/requires.txt 2023-11-24T22:58:19,937 writing top-level names to /tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/top_level.txt 2023-11-24T22:58:19,938 writing manifest file '/tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/SOURCES.txt' 2023-11-24T22:58:20,015 reading manifest file '/tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/SOURCES.txt' 2023-11-24T22:58:20,017 adding license file 'LICENSE.txt' 2023-11-24T22:58:20,019 writing manifest file '/tmp/pip-pip-egg-info-nwf8amzo/PDAnalysis.egg-info/SOURCES.txt' 2023-11-24T22:58:20,130 Preparing metadata (setup.py): finished with status 'done' 2023-11-24T22:58:20,134 Source in /tmp/pip-wheel-yee2054t/pdanalysis_dcd600cb65194c8bb5d5d30698fe05e4 has version 0.0.0, which satisfies requirement pdanalysis==0.0.0 from https://files.pythonhosted.org/packages/a7/e3/5cb3982fc474be70e40b200f318f89c88654ed728333c24a96859be3bab0/PDAnalysis-0.0.0.tar.gz 2023-11-24T22:58:20,135 Removed pdanalysis==0.0.0 from https://files.pythonhosted.org/packages/a7/e3/5cb3982fc474be70e40b200f318f89c88654ed728333c24a96859be3bab0/PDAnalysis-0.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-ojnbvjbp' 2023-11-24T22:58:20,142 Created temporary directory: /tmp/pip-unpack-19ld_pr4 2023-11-24T22:58:20,143 Created temporary directory: /tmp/pip-unpack-hn5xz6iq 2023-11-24T22:58:20,151 Building wheels for collected packages: pdanalysis 2023-11-24T22:58:20,155 Created temporary directory: /tmp/pip-wheel-t9sn8o_1 2023-11-24T22:58:20,156 Building wheel for pdanalysis (setup.py): started 2023-11-24T22:58:20,157 Destination directory: /tmp/pip-wheel-t9sn8o_1 2023-11-24T22:58:20,157 Running command python setup.py bdist_wheel 2023-11-24T22:58:21,141 running bdist_wheel 2023-11-24T22:58:21,235 running build 2023-11-24T22:58:21,236 running build_py 2023-11-24T22:58:21,262 creating build 2023-11-24T22:58:21,263 creating build/lib 2023-11-24T22:58:21,264 creating build/lib/PDAnalysis 2023-11-24T22:58:21,265 copying PDAnalysis/main.py -> build/lib/PDAnalysis 2023-11-24T22:58:21,267 copying PDAnalysis/pdb_parser.py -> build/lib/PDAnalysis 2023-11-24T22:58:21,269 copying PDAnalysis/utils.py -> build/lib/PDAnalysis 2023-11-24T22:58:21,271 copying PDAnalysis/protein.py -> build/lib/PDAnalysis 2023-11-24T22:58:21,273 copying PDAnalysis/__init__.py -> build/lib/PDAnalysis 2023-11-24T22:58:21,275 copying PDAnalysis/deformation.py -> build/lib/PDAnalysis 2023-11-24T22:58:21,303 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-24T22:58:21,303 !! 2023-11-24T22:58:21,305 ******************************************************************************** 2023-11-24T22:58:21,305 Please avoid running ``setup.py`` directly. 2023-11-24T22:58:21,305 Instead, use pypa/build, pypa/installer or other 2023-11-24T22:58:21,306 standards-based tools. 2023-11-24T22:58:21,307 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-24T22:58:21,307 ******************************************************************************** 2023-11-24T22:58:21,308 !! 2023-11-24T22:58:21,308 self.initialize_options() 2023-11-24T22:58:21,328 installing to build/bdist.linux-armv7l/wheel 2023-11-24T22:58:21,328 running install 2023-11-24T22:58:21,351 running install_lib 2023-11-24T22:58:21,375 creating build/bdist.linux-armv7l 2023-11-24T22:58:21,376 creating build/bdist.linux-armv7l/wheel 2023-11-24T22:58:21,377 creating build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,378 copying build/lib/PDAnalysis/main.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,380 copying build/lib/PDAnalysis/pdb_parser.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,383 copying build/lib/PDAnalysis/utils.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,384 copying build/lib/PDAnalysis/protein.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,386 copying build/lib/PDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,388 copying build/lib/PDAnalysis/deformation.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-24T22:58:21,390 running install_egg_info 2023-11-24T22:58:21,450 running egg_info 2023-11-24T22:58:21,474 writing PDAnalysis.egg-info/PKG-INFO 2023-11-24T22:58:21,477 writing dependency_links to PDAnalysis.egg-info/dependency_links.txt 2023-11-24T22:58:21,479 writing entry points to PDAnalysis.egg-info/entry_points.txt 2023-11-24T22:58:21,480 writing requirements to PDAnalysis.egg-info/requires.txt 2023-11-24T22:58:21,481 writing top-level names to PDAnalysis.egg-info/top_level.txt 2023-11-24T22:58:21,508 reading manifest file 'PDAnalysis.egg-info/SOURCES.txt' 2023-11-24T22:58:21,509 adding license file 'LICENSE.txt' 2023-11-24T22:58:21,511 writing manifest file 'PDAnalysis.egg-info/SOURCES.txt' 2023-11-24T22:58:21,513 Copying PDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/PDAnalysis-0.0.0-py3.11.egg-info 2023-11-24T22:58:21,524 running install_scripts 2023-11-24T22:58:21,540 creating build/bdist.linux-armv7l/wheel/PDAnalysis-0.0.0.dist-info/WHEEL 2023-11-24T22:58:21,543 creating '/tmp/pip-wheel-t9sn8o_1/PDAnalysis-0.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-24T22:58:21,545 adding 'PDAnalysis/__init__.py' 2023-11-24T22:58:21,547 adding 'PDAnalysis/deformation.py' 2023-11-24T22:58:21,549 adding 'PDAnalysis/main.py' 2023-11-24T22:58:21,551 adding 'PDAnalysis/pdb_parser.py' 2023-11-24T22:58:21,553 adding 'PDAnalysis/protein.py' 2023-11-24T22:58:21,554 adding 'PDAnalysis/utils.py' 2023-11-24T22:58:21,557 adding 'PDAnalysis-0.0.0.dist-info/LICENSE.txt' 2023-11-24T22:58:21,558 adding 'PDAnalysis-0.0.0.dist-info/METADATA' 2023-11-24T22:58:21,559 adding 'PDAnalysis-0.0.0.dist-info/WHEEL' 2023-11-24T22:58:21,560 adding 'PDAnalysis-0.0.0.dist-info/entry_points.txt' 2023-11-24T22:58:21,561 adding 'PDAnalysis-0.0.0.dist-info/top_level.txt' 2023-11-24T22:58:21,562 adding 'PDAnalysis-0.0.0.dist-info/RECORD' 2023-11-24T22:58:21,563 removing build/bdist.linux-armv7l/wheel 2023-11-24T22:58:21,680 Building wheel for pdanalysis (setup.py): finished with status 'done' 2023-11-24T22:58:21,683 Created wheel for pdanalysis: filename=PDAnalysis-0.0.0-py3-none-any.whl size=17956 sha256=16b129689ac28b3f20d124c6d7309d4caffd52ce1a34f3aaaa8ec3118e53170f 2023-11-24T22:58:21,684 Stored in directory: /tmp/pip-ephem-wheel-cache-vq9w6wg9/wheels/65/9a/db/93d44cc347d57c1b8aa1d0030d58a6b792e5cec7600cd5341d 2023-11-24T22:58:21,695 Successfully built pdanalysis 2023-11-24T22:58:21,699 Removed build tracker: '/tmp/pip-build-tracker-ojnbvjbp'