2023-11-25T01:33:45,886 Created temporary directory: /tmp/pip-build-tracker-j0cayb8i 2023-11-25T01:33:45,887 Initialized build tracking at /tmp/pip-build-tracker-j0cayb8i 2023-11-25T01:33:45,887 Created build tracker: /tmp/pip-build-tracker-j0cayb8i 2023-11-25T01:33:45,888 Entered build tracker: /tmp/pip-build-tracker-j0cayb8i 2023-11-25T01:33:45,888 Created temporary directory: /tmp/pip-wheel-vdsm4aif 2023-11-25T01:33:45,892 Created temporary directory: /tmp/pip-ephem-wheel-cache-z5pquu_f 2023-11-25T01:33:45,913 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T01:33:45,917 2 location(s) to search for versions of pdanalysis: 2023-11-25T01:33:45,917 * https://pypi.org/simple/pdanalysis/ 2023-11-25T01:33:45,917 * https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:33:45,918 Fetching project page and analyzing links: https://pypi.org/simple/pdanalysis/ 2023-11-25T01:33:45,918 Getting page https://pypi.org/simple/pdanalysis/ 2023-11-25T01:33:45,920 Found index url https://pypi.org/simple/ 2023-11-25T01:33:46,060 Fetched page https://pypi.org/simple/pdanalysis/ as application/vnd.pypi.simple.v1+json 2023-11-25T01:33:46,063 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/31/19/07c0ae5aa4e6e55a308fa728b61c5d6cd39d7c1b09b0fe2b84e016fc67e9/PDAnalysis-0.0.0-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:33:46,064 Found link https://files.pythonhosted.org/packages/a7/e3/5cb3982fc474be70e40b200f318f89c88654ed728333c24a96859be3bab0/PDAnalysis-0.0.0.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.0 2023-11-25T01:33:46,064 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/8d/07/71de75b86360b7c9d543b83fcf393edc1edde2b45e946f40daa8dd3108e9/PDAnalysis-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:33:46,065 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/73/23/029435f87d9ba508d9399c68e8cf6386aca6a51ee1514474380ef54f3b1b/PDAnalysis-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:33:46,066 Found link https://files.pythonhosted.org/packages/63/29/8aefced1738d564616c271fcc970980d30060381271dde222a5e9beaed98/PDAnalysis-0.0.2.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.2 2023-11-25T01:33:46,067 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/13/22/236f015727611aa024b983b55177c5eb07bc3d8af4fd587e649025ea98a4/PDAnalysis-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:33:46,068 Found link https://files.pythonhosted.org/packages/4c/f1/36c98c3e3279c0f9e620bcb37ba0d8057a1c807ad419eb1492ba2d042bb9/PDAnalysis-0.0.3.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.3 2023-11-25T01:33:46,069 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/f7/a0/3ffe19799e3f7632f7807e65d975d88fd201173a1931cf243f84c7fbccdc/PDAnalysis-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:33:46,069 Found link https://files.pythonhosted.org/packages/80/eb/b0c8b9b6372a66b2389cc76840e8fab7625b2f53b06eb0b9eada5545ed83/PDAnalysis-0.0.4.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.4 2023-11-25T01:33:46,070 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:33:46,071 Getting page https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:33:46,072 Found index url https://www.piwheels.org/simple/ 2023-11-25T01:33:46,241 Fetched page https://www.piwheels.org/simple/pdanalysis/ as text/html 2023-11-25T01:33:46,243 Skipping link: No binaries permitted for pdanalysis: https://www.piwheels.org/simple/pdanalysis/PDAnalysis-0.0.0-py3-none-any.whl#sha256=16b129689ac28b3f20d124c6d7309d4caffd52ce1a34f3aaaa8ec3118e53170f (from https://www.piwheels.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:33:46,244 Skipping link: not a file: https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:33:46,245 Skipping link: not a file: https://pypi.org/simple/pdanalysis/ 2023-11-25T01:33:46,266 Given no hashes to check 1 links for project 'pdanalysis': discarding no candidates 2023-11-25T01:33:46,286 Collecting pdanalysis==0.0.2 2023-11-25T01:33:46,288 Created temporary directory: /tmp/pip-unpack-xif9yk8_ 2023-11-25T01:33:46,427 Downloading PDAnalysis-0.0.2.tar.gz (18 kB) 2023-11-25T01:33:46,467 Added pdanalysis==0.0.2 from https://files.pythonhosted.org/packages/63/29/8aefced1738d564616c271fcc970980d30060381271dde222a5e9beaed98/PDAnalysis-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-j0cayb8i' 2023-11-25T01:33:46,468 Running setup.py (path:/tmp/pip-wheel-vdsm4aif/pdanalysis_151e08a612dc4174bb62895df237456f/setup.py) egg_info for package pdanalysis 2023-11-25T01:33:46,469 Created temporary directory: /tmp/pip-pip-egg-info-gts7mje_ 2023-11-25T01:33:46,470 Preparing metadata (setup.py): started 2023-11-25T01:33:46,471 Running command python setup.py egg_info 2023-11-25T01:33:47,516 running egg_info 2023-11-25T01:33:47,517 creating /tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info 2023-11-25T01:33:47,546 writing /tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/PKG-INFO 2023-11-25T01:33:47,549 writing dependency_links to /tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/dependency_links.txt 2023-11-25T01:33:47,550 writing entry points to /tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/entry_points.txt 2023-11-25T01:33:47,552 writing requirements to /tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/requires.txt 2023-11-25T01:33:47,553 writing top-level names to /tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/top_level.txt 2023-11-25T01:33:47,554 writing manifest file '/tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:33:47,637 reading manifest file '/tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:33:47,638 adding license file 'LICENSE.txt' 2023-11-25T01:33:47,640 writing manifest file '/tmp/pip-pip-egg-info-gts7mje_/PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:33:47,751 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T01:33:47,756 Source in /tmp/pip-wheel-vdsm4aif/pdanalysis_151e08a612dc4174bb62895df237456f has version 0.0.2, which satisfies requirement pdanalysis==0.0.2 from https://files.pythonhosted.org/packages/63/29/8aefced1738d564616c271fcc970980d30060381271dde222a5e9beaed98/PDAnalysis-0.0.2.tar.gz 2023-11-25T01:33:47,757 Removed pdanalysis==0.0.2 from https://files.pythonhosted.org/packages/63/29/8aefced1738d564616c271fcc970980d30060381271dde222a5e9beaed98/PDAnalysis-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-j0cayb8i' 2023-11-25T01:33:47,763 Created temporary directory: /tmp/pip-unpack-xp8i5l32 2023-11-25T01:33:47,764 Created temporary directory: /tmp/pip-unpack-6p4bjly8 2023-11-25T01:33:47,772 Building wheels for collected packages: pdanalysis 2023-11-25T01:33:47,776 Created temporary directory: /tmp/pip-wheel-a7her39i 2023-11-25T01:33:47,777 Building wheel for pdanalysis (setup.py): started 2023-11-25T01:33:47,778 Destination directory: /tmp/pip-wheel-a7her39i 2023-11-25T01:33:47,779 Running command python setup.py bdist_wheel 2023-11-25T01:33:48,830 running bdist_wheel 2023-11-25T01:33:48,962 running build 2023-11-25T01:33:48,963 running build_py 2023-11-25T01:33:48,990 creating build 2023-11-25T01:33:48,991 creating build/lib 2023-11-25T01:33:48,992 creating build/lib/PDAnalysis 2023-11-25T01:33:48,993 copying PDAnalysis/utils.py -> build/lib/PDAnalysis 2023-11-25T01:33:48,995 copying PDAnalysis/__init__.py -> build/lib/PDAnalysis 2023-11-25T01:33:48,997 copying PDAnalysis/deformation.py -> build/lib/PDAnalysis 2023-11-25T01:33:48,999 copying PDAnalysis/pdb_parser.py -> build/lib/PDAnalysis 2023-11-25T01:33:49,001 copying PDAnalysis/protein.py -> build/lib/PDAnalysis 2023-11-25T01:33:49,029 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T01:33:49,030 !! 2023-11-25T01:33:49,031 ******************************************************************************** 2023-11-25T01:33:49,031 Please avoid running ``setup.py`` directly. 2023-11-25T01:33:49,032 Instead, use pypa/build, pypa/installer or other 2023-11-25T01:33:49,032 standards-based tools. 2023-11-25T01:33:49,033 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T01:33:49,034 ******************************************************************************** 2023-11-25T01:33:49,034 !! 2023-11-25T01:33:49,035 self.initialize_options() 2023-11-25T01:33:49,056 installing to build/bdist.linux-armv7l/wheel 2023-11-25T01:33:49,057 running install 2023-11-25T01:33:49,080 running install_lib 2023-11-25T01:33:49,106 creating build/bdist.linux-armv7l 2023-11-25T01:33:49,106 creating build/bdist.linux-armv7l/wheel 2023-11-25T01:33:49,108 creating build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:33:49,108 copying build/lib/PDAnalysis/utils.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:33:49,110 copying build/lib/PDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:33:49,112 copying build/lib/PDAnalysis/deformation.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:33:49,114 copying build/lib/PDAnalysis/pdb_parser.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:33:49,117 copying build/lib/PDAnalysis/protein.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:33:49,119 running install_egg_info 2023-11-25T01:33:49,150 running egg_info 2023-11-25T01:33:49,175 writing PDAnalysis.egg-info/PKG-INFO 2023-11-25T01:33:49,178 writing dependency_links to PDAnalysis.egg-info/dependency_links.txt 2023-11-25T01:33:49,180 writing entry points to PDAnalysis.egg-info/entry_points.txt 2023-11-25T01:33:49,181 writing requirements to PDAnalysis.egg-info/requires.txt 2023-11-25T01:33:49,182 writing top-level names to PDAnalysis.egg-info/top_level.txt 2023-11-25T01:33:49,209 reading manifest file 'PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:33:49,211 adding license file 'LICENSE.txt' 2023-11-25T01:33:49,213 writing manifest file 'PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:33:49,215 Copying PDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/PDAnalysis-0.0.2-py3.11.egg-info 2023-11-25T01:33:49,225 running install_scripts 2023-11-25T01:33:49,241 creating build/bdist.linux-armv7l/wheel/PDAnalysis-0.0.2.dist-info/WHEEL 2023-11-25T01:33:49,243 creating '/tmp/pip-wheel-a7her39i/PDAnalysis-0.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T01:33:49,245 adding 'PDAnalysis/__init__.py' 2023-11-25T01:33:49,248 adding 'PDAnalysis/deformation.py' 2023-11-25T01:33:49,251 adding 'PDAnalysis/pdb_parser.py' 2023-11-25T01:33:49,253 adding 'PDAnalysis/protein.py' 2023-11-25T01:33:49,254 adding 'PDAnalysis/utils.py' 2023-11-25T01:33:49,257 adding 'PDAnalysis-0.0.2.dist-info/LICENSE.txt' 2023-11-25T01:33:49,258 adding 'PDAnalysis-0.0.2.dist-info/METADATA' 2023-11-25T01:33:49,259 adding 'PDAnalysis-0.0.2.dist-info/WHEEL' 2023-11-25T01:33:49,260 adding 'PDAnalysis-0.0.2.dist-info/entry_points.txt' 2023-11-25T01:33:49,261 adding 'PDAnalysis-0.0.2.dist-info/top_level.txt' 2023-11-25T01:33:49,262 adding 'PDAnalysis-0.0.2.dist-info/RECORD' 2023-11-25T01:33:49,263 removing build/bdist.linux-armv7l/wheel 2023-11-25T01:33:49,381 Building wheel for pdanalysis (setup.py): finished with status 'done' 2023-11-25T01:33:49,384 Created wheel for pdanalysis: filename=PDAnalysis-0.0.2-py3-none-any.whl size=19613 sha256=8a0865d81fcd637c36a9b80e50df197eda83983a70dca32841917cae5f9570a1 2023-11-25T01:33:49,385 Stored in directory: /tmp/pip-ephem-wheel-cache-z5pquu_f/wheels/f8/d1/3b/f57ae13879104effef2a763b3ba017003dfd68316444224335 2023-11-25T01:33:49,396 Successfully built pdanalysis 2023-11-25T01:33:49,400 Removed build tracker: '/tmp/pip-build-tracker-j0cayb8i'