2023-11-25T01:34:31,606 Created temporary directory: /tmp/pip-build-tracker-afv27t8v 2023-11-25T01:34:31,607 Initialized build tracking at /tmp/pip-build-tracker-afv27t8v 2023-11-25T01:34:31,607 Created build tracker: /tmp/pip-build-tracker-afv27t8v 2023-11-25T01:34:31,608 Entered build tracker: /tmp/pip-build-tracker-afv27t8v 2023-11-25T01:34:31,608 Created temporary directory: /tmp/pip-wheel-3d6tf75e 2023-11-25T01:34:31,612 Created temporary directory: /tmp/pip-ephem-wheel-cache-5selr3mt 2023-11-25T01:34:31,633 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T01:34:31,637 2 location(s) to search for versions of pdanalysis: 2023-11-25T01:34:31,637 * https://pypi.org/simple/pdanalysis/ 2023-11-25T01:34:31,637 * https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:34:31,637 Fetching project page and analyzing links: https://pypi.org/simple/pdanalysis/ 2023-11-25T01:34:31,638 Getting page https://pypi.org/simple/pdanalysis/ 2023-11-25T01:34:31,640 Found index url https://pypi.org/simple/ 2023-11-25T01:34:31,776 Fetched page https://pypi.org/simple/pdanalysis/ as application/vnd.pypi.simple.v1+json 2023-11-25T01:34:31,779 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/31/19/07c0ae5aa4e6e55a308fa728b61c5d6cd39d7c1b09b0fe2b84e016fc67e9/PDAnalysis-0.0.0-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:34:31,780 Found link https://files.pythonhosted.org/packages/a7/e3/5cb3982fc474be70e40b200f318f89c88654ed728333c24a96859be3bab0/PDAnalysis-0.0.0.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.0 2023-11-25T01:34:31,781 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/8d/07/71de75b86360b7c9d543b83fcf393edc1edde2b45e946f40daa8dd3108e9/PDAnalysis-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:34:31,781 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/73/23/029435f87d9ba508d9399c68e8cf6386aca6a51ee1514474380ef54f3b1b/PDAnalysis-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:34:31,782 Found link https://files.pythonhosted.org/packages/63/29/8aefced1738d564616c271fcc970980d30060381271dde222a5e9beaed98/PDAnalysis-0.0.2.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.2 2023-11-25T01:34:31,783 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/13/22/236f015727611aa024b983b55177c5eb07bc3d8af4fd587e649025ea98a4/PDAnalysis-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:34:31,784 Found link https://files.pythonhosted.org/packages/4c/f1/36c98c3e3279c0f9e620bcb37ba0d8057a1c807ad419eb1492ba2d042bb9/PDAnalysis-0.0.3.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.3 2023-11-25T01:34:31,785 Skipping link: No binaries permitted for pdanalysis: https://files.pythonhosted.org/packages/f7/a0/3ffe19799e3f7632f7807e65d975d88fd201173a1931cf243f84c7fbccdc/PDAnalysis-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:34:31,786 Found link https://files.pythonhosted.org/packages/80/eb/b0c8b9b6372a66b2389cc76840e8fab7625b2f53b06eb0b9eada5545ed83/PDAnalysis-0.0.4.tar.gz (from https://pypi.org/simple/pdanalysis/) (requires-python:>=3.7), version: 0.0.4 2023-11-25T01:34:31,787 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:34:31,787 Getting page https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:34:31,789 Found index url https://www.piwheels.org/simple/ 2023-11-25T01:34:31,939 Fetched page https://www.piwheels.org/simple/pdanalysis/ as text/html 2023-11-25T01:34:31,941 Skipping link: No binaries permitted for pdanalysis: https://www.piwheels.org/simple/pdanalysis/PDAnalysis-0.0.0-py3-none-any.whl#sha256=16b129689ac28b3f20d124c6d7309d4caffd52ce1a34f3aaaa8ec3118e53170f (from https://www.piwheels.org/simple/pdanalysis/) (requires-python:>=3.7) 2023-11-25T01:34:31,941 Skipping link: not a file: https://www.piwheels.org/simple/pdanalysis/ 2023-11-25T01:34:31,942 Skipping link: not a file: https://pypi.org/simple/pdanalysis/ 2023-11-25T01:34:31,961 Given no hashes to check 1 links for project 'pdanalysis': discarding no candidates 2023-11-25T01:34:31,979 Collecting pdanalysis==0.0.3 2023-11-25T01:34:31,981 Created temporary directory: /tmp/pip-unpack-xpuuspls 2023-11-25T01:34:32,116 Downloading PDAnalysis-0.0.3.tar.gz (18 kB) 2023-11-25T01:34:32,164 Added pdanalysis==0.0.3 from https://files.pythonhosted.org/packages/4c/f1/36c98c3e3279c0f9e620bcb37ba0d8057a1c807ad419eb1492ba2d042bb9/PDAnalysis-0.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-afv27t8v' 2023-11-25T01:34:32,165 Running setup.py (path:/tmp/pip-wheel-3d6tf75e/pdanalysis_80a5921dd7a548e2aad86c4bae808aff/setup.py) egg_info for package pdanalysis 2023-11-25T01:34:32,166 Created temporary directory: /tmp/pip-pip-egg-info-__1n9bst 2023-11-25T01:34:32,166 Preparing metadata (setup.py): started 2023-11-25T01:34:32,168 Running command python setup.py egg_info 2023-11-25T01:34:33,162 running egg_info 2023-11-25T01:34:33,164 creating /tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info 2023-11-25T01:34:33,189 writing /tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/PKG-INFO 2023-11-25T01:34:33,192 writing dependency_links to /tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/dependency_links.txt 2023-11-25T01:34:33,194 writing entry points to /tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/entry_points.txt 2023-11-25T01:34:33,196 writing requirements to /tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/requires.txt 2023-11-25T01:34:33,197 writing top-level names to /tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/top_level.txt 2023-11-25T01:34:33,199 writing manifest file '/tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:34:33,275 reading manifest file '/tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:34:33,277 adding license file 'LICENSE.txt' 2023-11-25T01:34:33,279 writing manifest file '/tmp/pip-pip-egg-info-__1n9bst/PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:34:33,385 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T01:34:33,389 Source in /tmp/pip-wheel-3d6tf75e/pdanalysis_80a5921dd7a548e2aad86c4bae808aff has version 0.0.3, which satisfies requirement pdanalysis==0.0.3 from https://files.pythonhosted.org/packages/4c/f1/36c98c3e3279c0f9e620bcb37ba0d8057a1c807ad419eb1492ba2d042bb9/PDAnalysis-0.0.3.tar.gz 2023-11-25T01:34:33,390 Removed pdanalysis==0.0.3 from https://files.pythonhosted.org/packages/4c/f1/36c98c3e3279c0f9e620bcb37ba0d8057a1c807ad419eb1492ba2d042bb9/PDAnalysis-0.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-afv27t8v' 2023-11-25T01:34:33,397 Created temporary directory: /tmp/pip-unpack-y9y7flsf 2023-11-25T01:34:33,398 Created temporary directory: /tmp/pip-unpack-zxg8ncwo 2023-11-25T01:34:33,406 Building wheels for collected packages: pdanalysis 2023-11-25T01:34:33,410 Created temporary directory: /tmp/pip-wheel-32ifb1b8 2023-11-25T01:34:33,410 Building wheel for pdanalysis (setup.py): started 2023-11-25T01:34:33,412 Destination directory: /tmp/pip-wheel-32ifb1b8 2023-11-25T01:34:33,412 Running command python setup.py bdist_wheel 2023-11-25T01:34:34,407 running bdist_wheel 2023-11-25T01:34:34,499 running build 2023-11-25T01:34:34,500 running build_py 2023-11-25T01:34:34,526 creating build 2023-11-25T01:34:34,527 creating build/lib 2023-11-25T01:34:34,528 creating build/lib/PDAnalysis 2023-11-25T01:34:34,529 copying PDAnalysis/protein.py -> build/lib/PDAnalysis 2023-11-25T01:34:34,531 copying PDAnalysis/pdb_parser.py -> build/lib/PDAnalysis 2023-11-25T01:34:34,534 copying PDAnalysis/__init__.py -> build/lib/PDAnalysis 2023-11-25T01:34:34,535 copying PDAnalysis/deformation.py -> build/lib/PDAnalysis 2023-11-25T01:34:34,538 copying PDAnalysis/utils.py -> build/lib/PDAnalysis 2023-11-25T01:34:34,565 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T01:34:34,566 !! 2023-11-25T01:34:34,567 ******************************************************************************** 2023-11-25T01:34:34,567 Please avoid running ``setup.py`` directly. 2023-11-25T01:34:34,568 Instead, use pypa/build, pypa/installer or other 2023-11-25T01:34:34,568 standards-based tools. 2023-11-25T01:34:34,569 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T01:34:34,569 ******************************************************************************** 2023-11-25T01:34:34,570 !! 2023-11-25T01:34:34,571 self.initialize_options() 2023-11-25T01:34:34,590 installing to build/bdist.linux-armv7l/wheel 2023-11-25T01:34:34,591 running install 2023-11-25T01:34:34,615 running install_lib 2023-11-25T01:34:34,639 creating build/bdist.linux-armv7l 2023-11-25T01:34:34,639 creating build/bdist.linux-armv7l/wheel 2023-11-25T01:34:34,641 creating build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:34:34,641 copying build/lib/PDAnalysis/protein.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:34:34,644 copying build/lib/PDAnalysis/pdb_parser.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:34:34,646 copying build/lib/PDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:34:34,648 copying build/lib/PDAnalysis/deformation.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:34:34,650 copying build/lib/PDAnalysis/utils.py -> build/bdist.linux-armv7l/wheel/PDAnalysis 2023-11-25T01:34:34,652 running install_egg_info 2023-11-25T01:34:34,711 running egg_info 2023-11-25T01:34:34,734 writing PDAnalysis.egg-info/PKG-INFO 2023-11-25T01:34:34,737 writing dependency_links to PDAnalysis.egg-info/dependency_links.txt 2023-11-25T01:34:34,738 writing entry points to PDAnalysis.egg-info/entry_points.txt 2023-11-25T01:34:34,740 writing requirements to PDAnalysis.egg-info/requires.txt 2023-11-25T01:34:34,741 writing top-level names to PDAnalysis.egg-info/top_level.txt 2023-11-25T01:34:34,766 reading manifest file 'PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:34:34,768 adding license file 'LICENSE.txt' 2023-11-25T01:34:34,770 writing manifest file 'PDAnalysis.egg-info/SOURCES.txt' 2023-11-25T01:34:34,771 Copying PDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/PDAnalysis-0.0.3-py3.11.egg-info 2023-11-25T01:34:34,782 running install_scripts 2023-11-25T01:34:34,797 creating build/bdist.linux-armv7l/wheel/PDAnalysis-0.0.3.dist-info/WHEEL 2023-11-25T01:34:34,799 creating '/tmp/pip-wheel-32ifb1b8/PDAnalysis-0.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T01:34:34,801 adding 'PDAnalysis/__init__.py' 2023-11-25T01:34:34,805 adding 'PDAnalysis/deformation.py' 2023-11-25T01:34:34,807 adding 'PDAnalysis/pdb_parser.py' 2023-11-25T01:34:34,809 adding 'PDAnalysis/protein.py' 2023-11-25T01:34:34,811 adding 'PDAnalysis/utils.py' 2023-11-25T01:34:34,813 adding 'PDAnalysis-0.0.3.dist-info/LICENSE.txt' 2023-11-25T01:34:34,814 adding 'PDAnalysis-0.0.3.dist-info/METADATA' 2023-11-25T01:34:34,816 adding 'PDAnalysis-0.0.3.dist-info/WHEEL' 2023-11-25T01:34:34,816 adding 'PDAnalysis-0.0.3.dist-info/entry_points.txt' 2023-11-25T01:34:34,817 adding 'PDAnalysis-0.0.3.dist-info/top_level.txt' 2023-11-25T01:34:34,818 adding 'PDAnalysis-0.0.3.dist-info/RECORD' 2023-11-25T01:34:34,820 removing build/bdist.linux-armv7l/wheel 2023-11-25T01:34:34,932 Building wheel for pdanalysis (setup.py): finished with status 'done' 2023-11-25T01:34:34,934 Created wheel for pdanalysis: filename=PDAnalysis-0.0.3-py3-none-any.whl size=19616 sha256=7d9f0cd3b719417ee001efaf5b2a43fbb59e23ea9564c75ea6e5400c830c006c 2023-11-25T01:34:34,936 Stored in directory: /tmp/pip-ephem-wheel-cache-5selr3mt/wheels/34/86/16/0c1a1ed4748d89c29245e029dc903cedef93ac656e8afb9729 2023-11-25T01:34:34,946 Successfully built pdanalysis 2023-11-25T01:34:34,950 Removed build tracker: '/tmp/pip-build-tracker-afv27t8v'